2023-07-28T22:38:07,574 Created temporary directory: /tmp/pip-build-tracker-3umayopn 2023-07-28T22:38:07,577 Initialized build tracking at /tmp/pip-build-tracker-3umayopn 2023-07-28T22:38:07,578 Created build tracker: /tmp/pip-build-tracker-3umayopn 2023-07-28T22:38:07,578 Entered build tracker: /tmp/pip-build-tracker-3umayopn 2023-07-28T22:38:07,579 Created temporary directory: /tmp/pip-wheel-nbxrudvc 2023-07-28T22:38:07,590 Created temporary directory: /tmp/pip-ephem-wheel-cache-a0onkuw8 2023-07-28T22:38:07,646 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-28T22:38:07,654 2 location(s) to search for versions of s4-clarity: 2023-07-28T22:38:07,654 * https://pypi.org/simple/s4-clarity/ 2023-07-28T22:38:07,654 * https://www.piwheels.org/simple/s4-clarity/ 2023-07-28T22:38:07,655 Fetching project page and analyzing links: https://pypi.org/simple/s4-clarity/ 2023-07-28T22:38:07,657 Getting page https://pypi.org/simple/s4-clarity/ 2023-07-28T22:38:07,661 Found index url https://pypi.org/simple/ 2023-07-28T22:38:07,856 Fetched page https://pypi.org/simple/s4-clarity/ as application/vnd.pypi.simple.v1+json 2023-07-28T22:38:07,867 Found link https://files.pythonhosted.org/packages/ca/a6/15811ae2d49be55805eb68370bb82b9f6311d7ca6a782586d73aa2c4b160/s4-clarity-1.0.0.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.0.0 2023-07-28T22:38:07,868 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/40/e7/f35bdd4be47093ab1f121ccd10def5d947e6336cbe0aa4f9dceb6ca64527/s4_clarity-1.0.0-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2023-07-28T22:38:07,869 Found link https://files.pythonhosted.org/packages/62/17/7f979ad240a007471c28cb3276afdbf3946c12ac67946475a87d54167359/s4-clarity-1.1.0.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.1.0 2023-07-28T22:38:07,870 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/66/43/7d2e646026ad872031accae960912aa55c403cf22cc318f1f4c63ec553f6/s4_clarity-1.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2023-07-28T22:38:07,871 Found link https://files.pythonhosted.org/packages/ed/e2/fb8982641b82d85e1c4452c7c23b5d0437f8a74db8fdcca930a36f4d7c8d/s4-clarity-1.1.1.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.1.1 2023-07-28T22:38:07,872 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/79/55/27c006c584837c96b0ca9e92554a136a2fb0a6008f135255974f881dcbc9/s4_clarity-1.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2023-07-28T22:38:07,873 Found link https://files.pythonhosted.org/packages/49/2e/c096956347d840ec8912fe92b3280d7a4a476f957fff39e89d568a41343b/s4-clarity-1.2.0.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.2.0 2023-07-28T22:38:07,874 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/cb/a9/429de0c2b424f4e6aedb691f5ccd48071a28d684e935e5945a79759066cc/s4_clarity-1.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2023-07-28T22:38:07,875 Found link https://files.pythonhosted.org/packages/39/0d/5485d7617dd139ad24503782ac60b68b3a028a4c7b8a264be0e8d0a4a003/s4-clarity-1.3.0.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.3.0 2023-07-28T22:38:07,876 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/22/95/3c8c96db916cf24fd50d55b8cf077f90f75ad6feaf044ddf728ee6ee4bfe/s4_clarity-1.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2023-07-28T22:38:07,877 Found link https://files.pythonhosted.org/packages/d9/0a/2ee9d57d52275e251a5e55339095076b9c683b48e75da5207f95ec001483/s4-clarity-1.3.1.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.3.1 2023-07-28T22:38:07,878 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/54/a3/9e9af29b79443cafdb3e3cc62f0cae7f1c6a981f7fa65c4f6d421fbbba4b/s4_clarity-1.3.1-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2023-07-28T22:38:07,879 Found link https://files.pythonhosted.org/packages/1a/6a/93ead5ae86425ec8e360bbbff6c5c5cb58cffbe8e26d700c88fc0f5101e5/s4-clarity-1.4.0.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.4.0 2023-07-28T22:38:07,880 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/1b/c7/96571d921f8bb14a129209ad5fb96a60f4124875b965ed37290455679014/s4_clarity-1.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2023-07-28T22:38:07,881 Found link https://files.pythonhosted.org/packages/9e/e8/25587a1146d55d7829518d4b43983efe075ed93ff9f1b4747bf4e467e034/s4-clarity-1.4.1.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.4.1 2023-07-28T22:38:07,882 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/51/2c/caa2597fec7ce02a3c7717d5bc11b36b93a67ba91c360b9a4b9af7b4da2c/s4_clarity-1.4.1-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2023-07-28T22:38:07,883 Found link https://files.pythonhosted.org/packages/ab/71/bd297dc30900153a5c1aa3862a0ce7ba291f473244fe4869a68f13c09218/s4-clarity-1.4.2.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.4.2 2023-07-28T22:38:07,884 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/a8/85/9f368fe5e045bec64c6930fc90a370b6d3ba5c90bf32a2e67e88df05f81d/s4_clarity-1.4.2-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2023-07-28T22:38:07,885 Fetching project page and analyzing links: https://www.piwheels.org/simple/s4-clarity/ 2023-07-28T22:38:07,885 Getting page https://www.piwheels.org/simple/s4-clarity/ 2023-07-28T22:38:07,888 Found index url https://www.piwheels.org/simple/ 2023-07-28T22:38:08,103 Fetched page https://www.piwheels.org/simple/s4-clarity/ as text/html 2023-07-28T22:38:08,112 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.4.1-py2.py3-none-any.whl#sha256=d87e770c57b548eb76008ba5e4bfc705658eb589d6218d9ee96ea8f4b2dd25fd (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2023-07-28T22:38:08,113 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.4.0-py2.py3-none-any.whl#sha256=d2497d5c55f816ca45971981af10a68ccd1381eaea9eabf1b98da1b26851f869 (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2023-07-28T22:38:08,113 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.3.1-py2.py3-none-any.whl#sha256=38d14284d66c6a7301c7275f777fd16156d3a877e2a0425ceb307e1ded81e0d1 (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2023-07-28T22:38:08,114 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.3.0-py2.py3-none-any.whl#sha256=1ce964f77b2d82c8da3fddd2e912a9a9fd55dede16dbd54a3cf5e64526876325 (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2023-07-28T22:38:08,114 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.2.0-py2.py3-none-any.whl#sha256=c1bb5beb2dcf13b7c05a5a10dfcdb94c12448b72ef7f35b956b7aff61cc7f538 (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2023-07-28T22:38:08,115 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.1.1-py2.py3-none-any.whl#sha256=bfefccc15c9657c25823896bffc2b82e5300da97f2209b73f5d1a4f197a06a22 (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2023-07-28T22:38:08,115 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.1.0-py2.py3-none-any.whl#sha256=308bc5fb7a88a7edfc147ebf8481d4e38616db9066133af7c29449bbce79f82d (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2023-07-28T22:38:08,116 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.0.0-py2.py3-none-any.whl#sha256=a1614f912db7b25405378b6c5813693d1a7db1781d77030370e234890b508800 (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2023-07-28T22:38:08,117 Skipping link: not a file: https://www.piwheels.org/simple/s4-clarity/ 2023-07-28T22:38:08,117 Skipping link: not a file: https://pypi.org/simple/s4-clarity/ 2023-07-28T22:38:08,153 Given no hashes to check 1 links for project 's4-clarity': discarding no candidates 2023-07-28T22:38:08,183 Collecting s4-clarity==1.4.2 2023-07-28T22:38:08,188 Created temporary directory: /tmp/pip-unpack-lfp872yr 2023-07-28T22:38:08,361 Downloading s4-clarity-1.4.2.tar.gz (68 kB) 2023-07-28T22:38:08,739 Added s4-clarity==1.4.2 from https://files.pythonhosted.org/packages/ab/71/bd297dc30900153a5c1aa3862a0ce7ba291f473244fe4869a68f13c09218/s4-clarity-1.4.2.tar.gz to build tracker '/tmp/pip-build-tracker-3umayopn' 2023-07-28T22:38:08,743 Running setup.py (path:/tmp/pip-wheel-nbxrudvc/s4-clarity_155b317dc553466a9a36adf322c98193/setup.py) egg_info for package s4-clarity 2023-07-28T22:38:08,744 Created temporary directory: /tmp/pip-pip-egg-info-w9z5sa2h 2023-07-28T22:38:08,745 Preparing metadata (setup.py): started 2023-07-28T22:38:08,747 Running command python setup.py egg_info 2023-07-28T22:38:10,310 running egg_info 2023-07-28T22:38:10,313 creating /tmp/pip-pip-egg-info-w9z5sa2h/s4_clarity.egg-info 2023-07-28T22:38:10,375 writing /tmp/pip-pip-egg-info-w9z5sa2h/s4_clarity.egg-info/PKG-INFO 2023-07-28T22:38:10,379 writing dependency_links to /tmp/pip-pip-egg-info-w9z5sa2h/s4_clarity.egg-info/dependency_links.txt 2023-07-28T22:38:10,384 writing requirements to /tmp/pip-pip-egg-info-w9z5sa2h/s4_clarity.egg-info/requires.txt 2023-07-28T22:38:10,386 writing top-level names to /tmp/pip-pip-egg-info-w9z5sa2h/s4_clarity.egg-info/top_level.txt 2023-07-28T22:38:10,389 writing manifest file '/tmp/pip-pip-egg-info-w9z5sa2h/s4_clarity.egg-info/SOURCES.txt' 2023-07-28T22:38:10,600 reading manifest file '/tmp/pip-pip-egg-info-w9z5sa2h/s4_clarity.egg-info/SOURCES.txt' 2023-07-28T22:38:10,603 adding license file 'LICENSE' 2023-07-28T22:38:10,613 writing manifest file '/tmp/pip-pip-egg-info-w9z5sa2h/s4_clarity.egg-info/SOURCES.txt' 2023-07-28T22:38:10,615 /usr/local/lib/python3.7/dist-packages/setuptools/config/setupcfg.py:293: _DeprecatedConfig: Deprecated config in `setup.cfg` 2023-07-28T22:38:10,616 !! 2023-07-28T22:38:10,616 ******************************************************************************** 2023-07-28T22:38:10,617 The license_file parameter is deprecated, use license_files instead. 2023-07-28T22:38:10,617 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-07-28T22:38:10,618 or your builds will no longer be supported. 2023-07-28T22:38:10,619 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-28T22:38:10,619 ******************************************************************************** 2023-07-28T22:38:10,620 !! 2023-07-28T22:38:10,621 parsed = self.parsers.get(option_name, lambda x: x)(value) 2023-07-28T22:38:10,735 Preparing metadata (setup.py): finished with status 'done' 2023-07-28T22:38:10,748 Source in /tmp/pip-wheel-nbxrudvc/s4-clarity_155b317dc553466a9a36adf322c98193 has version 1.4.2, which satisfies requirement s4-clarity==1.4.2 from https://files.pythonhosted.org/packages/ab/71/bd297dc30900153a5c1aa3862a0ce7ba291f473244fe4869a68f13c09218/s4-clarity-1.4.2.tar.gz 2023-07-28T22:38:10,750 Removed s4-clarity==1.4.2 from https://files.pythonhosted.org/packages/ab/71/bd297dc30900153a5c1aa3862a0ce7ba291f473244fe4869a68f13c09218/s4-clarity-1.4.2.tar.gz from build tracker '/tmp/pip-build-tracker-3umayopn' 2023-07-28T22:38:10,766 Created temporary directory: /tmp/pip-unpack-bqcbtww7 2023-07-28T22:38:10,768 Building wheels for collected packages: s4-clarity 2023-07-28T22:38:10,776 Created temporary directory: /tmp/pip-wheel-r6zc1y07 2023-07-28T22:38:10,777 Building wheel for s4-clarity (setup.py): started 2023-07-28T22:38:10,779 Destination directory: /tmp/pip-wheel-r6zc1y07 2023-07-28T22:38:10,779 Running command python setup.py bdist_wheel 2023-07-28T22:38:11,978 /usr/local/lib/python3.7/dist-packages/setuptools/config/setupcfg.py:293: _DeprecatedConfig: Deprecated config in `setup.cfg` 2023-07-28T22:38:11,979 !! 2023-07-28T22:38:11,980 ******************************************************************************** 2023-07-28T22:38:11,980 The license_file parameter is deprecated, use license_files instead. 2023-07-28T22:38:11,981 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-07-28T22:38:11,981 or your builds will no longer be supported. 2023-07-28T22:38:11,982 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-28T22:38:11,982 ******************************************************************************** 2023-07-28T22:38:11,983 !! 2023-07-28T22:38:11,983 parsed = self.parsers.get(option_name, lambda x: x)(value) 2023-07-28T22:38:12,376 running bdist_wheel 2023-07-28T22:38:13,099 running build 2023-07-28T22:38:13,099 running build_py 2023-07-28T22:38:13,172 creating build 2023-07-28T22:38:13,173 creating build/lib 2023-07-28T22:38:13,174 creating build/lib/s4 2023-07-28T22:38:13,177 copying s4/__init__.py -> build/lib/s4 2023-07-28T22:38:13,185 creating build/lib/s4/clarity 2023-07-28T22:38:13,187 copying s4/clarity/researcher.py -> build/lib/s4/clarity 2023-07-28T22:38:13,192 copying s4/clarity/permission.py -> build/lib/s4/clarity 2023-07-28T22:38:13,196 copying s4/clarity/exception.py -> build/lib/s4/clarity 2023-07-28T22:38:13,201 copying s4/clarity/file.py -> build/lib/s4/clarity 2023-07-28T22:38:13,206 copying s4/clarity/types.py -> build/lib/s4/clarity 2023-07-28T22:38:13,209 copying s4/clarity/version.py -> build/lib/s4/clarity 2023-07-28T22:38:13,213 copying s4/clarity/queue.py -> build/lib/s4/clarity 2023-07-28T22:38:13,217 copying s4/clarity/container.py -> build/lib/s4/clarity 2023-07-28T22:38:13,222 copying s4/clarity/role.py -> build/lib/s4/clarity 2023-07-28T22:38:13,225 copying s4/clarity/__init__.py -> build/lib/s4/clarity 2023-07-28T22:38:13,229 copying s4/clarity/instrument.py -> build/lib/s4/clarity 2023-07-28T22:38:13,233 copying s4/clarity/sample.py -> build/lib/s4/clarity 2023-07-28T22:38:13,238 copying s4/clarity/process.py -> build/lib/s4/clarity 2023-07-28T22:38:13,242 copying s4/clarity/project.py -> build/lib/s4/clarity 2023-07-28T22:38:13,246 copying s4/clarity/reagent_type.py -> build/lib/s4/clarity 2023-07-28T22:38:13,250 copying s4/clarity/artifact.py -> build/lib/s4/clarity 2023-07-28T22:38:13,254 copying s4/clarity/lab.py -> build/lib/s4/clarity 2023-07-28T22:38:13,259 copying s4/clarity/routing.py -> build/lib/s4/clarity 2023-07-28T22:38:13,263 copying s4/clarity/iomaps.py -> build/lib/s4/clarity 2023-07-28T22:38:13,268 copying s4/clarity/control_type.py -> build/lib/s4/clarity 2023-07-28T22:38:13,272 copying s4/clarity/reagent_kit.py -> build/lib/s4/clarity 2023-07-28T22:38:13,276 copying s4/clarity/console.py -> build/lib/s4/clarity 2023-07-28T22:38:13,280 copying s4/clarity/reagent_lot.py -> build/lib/s4/clarity 2023-07-28T22:38:13,284 copying s4/clarity/lims.py -> build/lib/s4/clarity 2023-07-28T22:38:13,290 copying s4/clarity/step.py -> build/lib/s4/clarity 2023-07-28T22:38:13,297 creating build/lib/s4/clarity/steputils 2023-07-28T22:38:13,299 copying s4/clarity/steputils/actions.py -> build/lib/s4/clarity/steputils 2023-07-28T22:38:13,304 copying s4/clarity/steputils/__init__.py -> build/lib/s4/clarity/steputils 2023-07-28T22:38:13,308 copying s4/clarity/steputils/file_utils.py -> build/lib/s4/clarity/steputils 2023-07-28T22:38:13,312 copying s4/clarity/steputils/copyudfs.py -> build/lib/s4/clarity/steputils 2023-07-28T22:38:13,318 copying s4/clarity/steputils/step_runner.py -> build/lib/s4/clarity/steputils 2023-07-28T22:38:13,324 copying s4/clarity/steputils/placement_utils.py -> build/lib/s4/clarity/steputils 2023-07-28T22:38:13,329 copying s4/clarity/steputils/step_average_utils.py -> build/lib/s4/clarity/steputils 2023-07-28T22:38:13,335 creating build/lib/s4/clarity/scripts 2023-07-28T22:38:13,338 copying s4/clarity/scripts/triggered_step_epp.py -> build/lib/s4/clarity/scripts 2023-07-28T22:38:13,343 copying s4/clarity/scripts/file_argument_script.py -> build/lib/s4/clarity/scripts 2023-07-28T22:38:13,348 copying s4/clarity/scripts/workflow_test.py -> build/lib/s4/clarity/scripts 2023-07-28T22:38:13,352 copying s4/clarity/scripts/epp_output_formatter.py -> build/lib/s4/clarity/scripts 2023-07-28T22:38:13,357 copying s4/clarity/scripts/__init__.py -> build/lib/s4/clarity/scripts 2023-07-28T22:38:13,361 copying s4/clarity/scripts/derived_sample_automation.py -> build/lib/s4/clarity/scripts 2023-07-28T22:38:13,366 copying s4/clarity/scripts/shell.py -> build/lib/s4/clarity/scripts 2023-07-28T22:38:13,371 copying s4/clarity/scripts/genericscript.py -> build/lib/s4/clarity/scripts 2023-07-28T22:38:13,376 copying s4/clarity/scripts/user_message_exception.py -> build/lib/s4/clarity/scripts 2023-07-28T22:38:13,381 copying s4/clarity/scripts/stepepp.py -> build/lib/s4/clarity/scripts 2023-07-28T22:38:13,386 copying s4/clarity/scripts/htmllogging.py -> build/lib/s4/clarity/scripts 2023-07-28T22:38:13,392 creating build/lib/s4/clarity/configuration 2023-07-28T22:38:13,395 copying s4/clarity/configuration/udf.py -> build/lib/s4/clarity/configuration 2023-07-28T22:38:13,400 copying s4/clarity/configuration/stage.py -> build/lib/s4/clarity/configuration 2023-07-28T22:38:13,404 copying s4/clarity/configuration/__init__.py -> build/lib/s4/clarity/configuration 2023-07-28T22:38:13,408 copying s4/clarity/configuration/process_type.py -> build/lib/s4/clarity/configuration 2023-07-28T22:38:13,412 copying s4/clarity/configuration/protocol.py -> build/lib/s4/clarity/configuration 2023-07-28T22:38:13,417 copying s4/clarity/configuration/workflow.py -> build/lib/s4/clarity/configuration 2023-07-28T22:38:13,423 creating build/lib/s4/clarity/_internal 2023-07-28T22:38:13,426 copying s4/clarity/_internal/props.py -> build/lib/s4/clarity/_internal 2023-07-28T22:38:13,431 copying s4/clarity/_internal/__init__.py -> build/lib/s4/clarity/_internal 2023-07-28T22:38:13,435 copying s4/clarity/_internal/udffactory.py -> build/lib/s4/clarity/_internal 2023-07-28T22:38:13,438 copying s4/clarity/_internal/element.py -> build/lib/s4/clarity/_internal 2023-07-28T22:38:13,443 copying s4/clarity/_internal/lazy_property.py -> build/lib/s4/clarity/_internal 2023-07-28T22:38:13,446 copying s4/clarity/_internal/fields.py -> build/lib/s4/clarity/_internal 2023-07-28T22:38:13,451 copying s4/clarity/_internal/factory.py -> build/lib/s4/clarity/_internal 2023-07-28T22:38:13,456 copying s4/clarity/_internal/stepfactory.py -> build/lib/s4/clarity/_internal 2023-07-28T22:38:13,459 copying s4/clarity/_internal/fakesession.py -> build/lib/s4/clarity/_internal 2023-07-28T22:38:13,464 creating build/lib/s4/clarity/utils 2023-07-28T22:38:13,466 copying s4/clarity/utils/artifact_ancestry.py -> build/lib/s4/clarity/utils 2023-07-28T22:38:13,471 copying s4/clarity/utils/date_util.py -> build/lib/s4/clarity/utils 2023-07-28T22:38:13,474 copying s4/clarity/utils/__init__.py -> build/lib/s4/clarity/utils 2023-07-28T22:38:13,478 copying s4/clarity/utils/ssh.py -> build/lib/s4/clarity/utils 2023-07-28T22:38:13,481 copying s4/clarity/utils/sorting_util.py -> build/lib/s4/clarity/utils 2023-07-28T22:38:13,575 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-07-28T22:38:13,576 !! 2023-07-28T22:38:13,576 ******************************************************************************** 2023-07-28T22:38:13,577 Please avoid running ``setup.py`` directly. 2023-07-28T22:38:13,577 Instead, use pypa/build, pypa/installer, pypa/build or 2023-07-28T22:38:13,577 other standards-based tools. 2023-07-28T22:38:13,578 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-07-28T22:38:13,578 ******************************************************************************** 2023-07-28T22:38:13,579 !! 2023-07-28T22:38:13,579 self.initialize_options() 2023-07-28T22:38:13,641 installing to build/bdist.linux-armv7l/wheel 2023-07-28T22:38:13,642 running install 2023-07-28T22:38:13,700 running install_lib 2023-07-28T22:38:13,769 creating build/bdist.linux-armv7l 2023-07-28T22:38:13,770 creating build/bdist.linux-armv7l/wheel 2023-07-28T22:38:13,774 creating build/bdist.linux-armv7l/wheel/s4 2023-07-28T22:38:13,778 creating build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,780 copying build/lib/s4/clarity/researcher.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,785 copying build/lib/s4/clarity/permission.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,790 creating build/bdist.linux-armv7l/wheel/s4/clarity/steputils 2023-07-28T22:38:13,792 copying build/lib/s4/clarity/steputils/actions.py -> build/bdist.linux-armv7l/wheel/s4/clarity/steputils 2023-07-28T22:38:13,797 copying build/lib/s4/clarity/steputils/__init__.py -> build/bdist.linux-armv7l/wheel/s4/clarity/steputils 2023-07-28T22:38:13,801 copying build/lib/s4/clarity/steputils/file_utils.py -> build/bdist.linux-armv7l/wheel/s4/clarity/steputils 2023-07-28T22:38:13,806 copying build/lib/s4/clarity/steputils/copyudfs.py -> build/bdist.linux-armv7l/wheel/s4/clarity/steputils 2023-07-28T22:38:13,810 copying build/lib/s4/clarity/steputils/step_runner.py -> build/bdist.linux-armv7l/wheel/s4/clarity/steputils 2023-07-28T22:38:13,816 copying build/lib/s4/clarity/steputils/placement_utils.py -> build/bdist.linux-armv7l/wheel/s4/clarity/steputils 2023-07-28T22:38:13,820 copying build/lib/s4/clarity/steputils/step_average_utils.py -> build/bdist.linux-armv7l/wheel/s4/clarity/steputils 2023-07-28T22:38:13,824 copying build/lib/s4/clarity/exception.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,828 copying build/lib/s4/clarity/file.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,833 copying build/lib/s4/clarity/types.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,837 copying build/lib/s4/clarity/version.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,841 copying build/lib/s4/clarity/queue.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,845 copying build/lib/s4/clarity/container.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,849 copying build/lib/s4/clarity/role.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,853 copying build/lib/s4/clarity/__init__.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,857 copying build/lib/s4/clarity/instrument.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,861 copying build/lib/s4/clarity/sample.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,866 creating build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2023-07-28T22:38:13,868 copying build/lib/s4/clarity/scripts/triggered_step_epp.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2023-07-28T22:38:13,872 copying build/lib/s4/clarity/scripts/file_argument_script.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2023-07-28T22:38:13,876 copying build/lib/s4/clarity/scripts/workflow_test.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2023-07-28T22:38:13,880 copying build/lib/s4/clarity/scripts/epp_output_formatter.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2023-07-28T22:38:13,884 copying build/lib/s4/clarity/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2023-07-28T22:38:13,887 copying build/lib/s4/clarity/scripts/derived_sample_automation.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2023-07-28T22:38:13,891 copying build/lib/s4/clarity/scripts/shell.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2023-07-28T22:38:13,894 copying build/lib/s4/clarity/scripts/genericscript.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2023-07-28T22:38:13,899 copying build/lib/s4/clarity/scripts/user_message_exception.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2023-07-28T22:38:13,902 copying build/lib/s4/clarity/scripts/stepepp.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2023-07-28T22:38:13,907 copying build/lib/s4/clarity/scripts/htmllogging.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2023-07-28T22:38:13,910 copying build/lib/s4/clarity/process.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,914 copying build/lib/s4/clarity/project.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,918 copying build/lib/s4/clarity/reagent_type.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,921 copying build/lib/s4/clarity/artifact.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,926 copying build/lib/s4/clarity/lab.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,930 copying build/lib/s4/clarity/routing.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,934 copying build/lib/s4/clarity/iomaps.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,938 copying build/lib/s4/clarity/control_type.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,943 creating build/bdist.linux-armv7l/wheel/s4/clarity/configuration 2023-07-28T22:38:13,945 copying build/lib/s4/clarity/configuration/udf.py -> build/bdist.linux-armv7l/wheel/s4/clarity/configuration 2023-07-28T22:38:13,949 copying build/lib/s4/clarity/configuration/stage.py -> build/bdist.linux-armv7l/wheel/s4/clarity/configuration 2023-07-28T22:38:13,953 copying build/lib/s4/clarity/configuration/__init__.py -> build/bdist.linux-armv7l/wheel/s4/clarity/configuration 2023-07-28T22:38:13,957 copying build/lib/s4/clarity/configuration/process_type.py -> build/bdist.linux-armv7l/wheel/s4/clarity/configuration 2023-07-28T22:38:13,960 copying build/lib/s4/clarity/configuration/protocol.py -> build/bdist.linux-armv7l/wheel/s4/clarity/configuration 2023-07-28T22:38:13,965 copying build/lib/s4/clarity/configuration/workflow.py -> build/bdist.linux-armv7l/wheel/s4/clarity/configuration 2023-07-28T22:38:13,969 copying build/lib/s4/clarity/reagent_kit.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,972 copying build/lib/s4/clarity/console.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,976 copying build/lib/s4/clarity/reagent_lot.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,980 copying build/lib/s4/clarity/lims.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:13,985 creating build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2023-07-28T22:38:13,987 copying build/lib/s4/clarity/_internal/props.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2023-07-28T22:38:13,993 copying build/lib/s4/clarity/_internal/__init__.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2023-07-28T22:38:13,996 copying build/lib/s4/clarity/_internal/udffactory.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2023-07-28T22:38:14,000 copying build/lib/s4/clarity/_internal/element.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2023-07-28T22:38:14,004 copying build/lib/s4/clarity/_internal/lazy_property.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2023-07-28T22:38:14,008 copying build/lib/s4/clarity/_internal/fields.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2023-07-28T22:38:14,012 copying build/lib/s4/clarity/_internal/factory.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2023-07-28T22:38:14,017 copying build/lib/s4/clarity/_internal/stepfactory.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2023-07-28T22:38:14,021 copying build/lib/s4/clarity/_internal/fakesession.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2023-07-28T22:38:14,024 copying build/lib/s4/clarity/step.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2023-07-28T22:38:14,031 creating build/bdist.linux-armv7l/wheel/s4/clarity/utils 2023-07-28T22:38:14,032 copying build/lib/s4/clarity/utils/artifact_ancestry.py -> build/bdist.linux-armv7l/wheel/s4/clarity/utils 2023-07-28T22:38:14,037 copying build/lib/s4/clarity/utils/date_util.py -> build/bdist.linux-armv7l/wheel/s4/clarity/utils 2023-07-28T22:38:14,041 copying build/lib/s4/clarity/utils/__init__.py -> build/bdist.linux-armv7l/wheel/s4/clarity/utils 2023-07-28T22:38:14,044 copying build/lib/s4/clarity/utils/ssh.py -> build/bdist.linux-armv7l/wheel/s4/clarity/utils 2023-07-28T22:38:14,048 copying build/lib/s4/clarity/utils/sorting_util.py -> build/bdist.linux-armv7l/wheel/s4/clarity/utils 2023-07-28T22:38:14,052 copying build/lib/s4/__init__.py -> build/bdist.linux-armv7l/wheel/s4 2023-07-28T22:38:14,056 running install_egg_info 2023-07-28T22:38:14,217 running egg_info 2023-07-28T22:38:14,279 writing s4_clarity.egg-info/PKG-INFO 2023-07-28T22:38:14,283 writing dependency_links to s4_clarity.egg-info/dependency_links.txt 2023-07-28T22:38:14,287 writing requirements to s4_clarity.egg-info/requires.txt 2023-07-28T22:38:14,290 writing top-level names to s4_clarity.egg-info/top_level.txt 2023-07-28T22:38:14,373 reading manifest file 's4_clarity.egg-info/SOURCES.txt' 2023-07-28T22:38:14,380 adding license file 'LICENSE' 2023-07-28T22:38:14,393 writing manifest file 's4_clarity.egg-info/SOURCES.txt' 2023-07-28T22:38:14,396 Copying s4_clarity.egg-info to build/bdist.linux-armv7l/wheel/s4_clarity-1.4.2-py3.7.egg-info 2023-07-28T22:38:14,419 running install_scripts 2023-07-28T22:38:14,450 creating build/bdist.linux-armv7l/wheel/s4_clarity-1.4.2.dist-info/WHEEL 2023-07-28T22:38:14,455 creating '/tmp/pip-wheel-r6zc1y07/s4_clarity-1.4.2-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-28T22:38:14,460 adding 's4/__init__.py' 2023-07-28T22:38:14,465 adding 's4/clarity/__init__.py' 2023-07-28T22:38:14,470 adding 's4/clarity/artifact.py' 2023-07-28T22:38:14,473 adding 's4/clarity/console.py' 2023-07-28T22:38:14,476 adding 's4/clarity/container.py' 2023-07-28T22:38:14,479 adding 's4/clarity/control_type.py' 2023-07-28T22:38:14,482 adding 's4/clarity/exception.py' 2023-07-28T22:38:14,485 adding 's4/clarity/file.py' 2023-07-28T22:38:14,488 adding 's4/clarity/instrument.py' 2023-07-28T22:38:14,491 adding 's4/clarity/iomaps.py' 2023-07-28T22:38:14,494 adding 's4/clarity/lab.py' 2023-07-28T22:38:14,498 adding 's4/clarity/lims.py' 2023-07-28T22:38:14,501 adding 's4/clarity/permission.py' 2023-07-28T22:38:14,503 adding 's4/clarity/process.py' 2023-07-28T22:38:14,506 adding 's4/clarity/project.py' 2023-07-28T22:38:14,509 adding 's4/clarity/queue.py' 2023-07-28T22:38:14,511 adding 's4/clarity/reagent_kit.py' 2023-07-28T22:38:14,514 adding 's4/clarity/reagent_lot.py' 2023-07-28T22:38:14,516 adding 's4/clarity/reagent_type.py' 2023-07-28T22:38:14,519 adding 's4/clarity/researcher.py' 2023-07-28T22:38:14,521 adding 's4/clarity/role.py' 2023-07-28T22:38:14,524 adding 's4/clarity/routing.py' 2023-07-28T22:38:14,528 adding 's4/clarity/sample.py' 2023-07-28T22:38:14,535 adding 's4/clarity/step.py' 2023-07-28T22:38:14,538 adding 's4/clarity/types.py' 2023-07-28T22:38:14,540 adding 's4/clarity/version.py' 2023-07-28T22:38:14,544 adding 's4/clarity/_internal/__init__.py' 2023-07-28T22:38:14,548 adding 's4/clarity/_internal/element.py' 2023-07-28T22:38:14,553 adding 's4/clarity/_internal/factory.py' 2023-07-28T22:38:14,556 adding 's4/clarity/_internal/fakesession.py' 2023-07-28T22:38:14,560 adding 's4/clarity/_internal/fields.py' 2023-07-28T22:38:14,563 adding 's4/clarity/_internal/lazy_property.py' 2023-07-28T22:38:14,570 adding 's4/clarity/_internal/props.py' 2023-07-28T22:38:14,573 adding 's4/clarity/_internal/stepfactory.py' 2023-07-28T22:38:14,576 adding 's4/clarity/_internal/udffactory.py' 2023-07-28T22:38:14,580 adding 's4/clarity/configuration/__init__.py' 2023-07-28T22:38:14,582 adding 's4/clarity/configuration/process_type.py' 2023-07-28T22:38:14,585 adding 's4/clarity/configuration/protocol.py' 2023-07-28T22:38:14,588 adding 's4/clarity/configuration/stage.py' 2023-07-28T22:38:14,592 adding 's4/clarity/configuration/udf.py' 2023-07-28T22:38:14,594 adding 's4/clarity/configuration/workflow.py' 2023-07-28T22:38:14,598 adding 's4/clarity/scripts/__init__.py' 2023-07-28T22:38:14,601 adding 's4/clarity/scripts/derived_sample_automation.py' 2023-07-28T22:38:14,604 adding 's4/clarity/scripts/epp_output_formatter.py' 2023-07-28T22:38:14,607 adding 's4/clarity/scripts/file_argument_script.py' 2023-07-28T22:38:14,611 adding 's4/clarity/scripts/genericscript.py' 2023-07-28T22:38:14,614 adding 's4/clarity/scripts/htmllogging.py' 2023-07-28T22:38:14,617 adding 's4/clarity/scripts/shell.py' 2023-07-28T22:38:14,620 adding 's4/clarity/scripts/stepepp.py' 2023-07-28T22:38:14,624 adding 's4/clarity/scripts/triggered_step_epp.py' 2023-07-28T22:38:14,626 adding 's4/clarity/scripts/user_message_exception.py' 2023-07-28T22:38:14,629 adding 's4/clarity/scripts/workflow_test.py' 2023-07-28T22:38:14,632 adding 's4/clarity/steputils/__init__.py' 2023-07-28T22:38:14,636 adding 's4/clarity/steputils/actions.py' 2023-07-28T22:38:14,639 adding 's4/clarity/steputils/copyudfs.py' 2023-07-28T22:38:14,642 adding 's4/clarity/steputils/file_utils.py' 2023-07-28T22:38:14,645 adding 's4/clarity/steputils/placement_utils.py' 2023-07-28T22:38:14,648 adding 's4/clarity/steputils/step_average_utils.py' 2023-07-28T22:38:14,655 adding 's4/clarity/steputils/step_runner.py' 2023-07-28T22:38:14,659 adding 's4/clarity/utils/__init__.py' 2023-07-28T22:38:14,662 adding 's4/clarity/utils/artifact_ancestry.py' 2023-07-28T22:38:14,665 adding 's4/clarity/utils/date_util.py' 2023-07-28T22:38:14,667 adding 's4/clarity/utils/sorting_util.py' 2023-07-28T22:38:14,670 adding 's4/clarity/utils/ssh.py' 2023-07-28T22:38:14,675 adding 's4_clarity-1.4.2.dist-info/LICENSE' 2023-07-28T22:38:14,677 adding 's4_clarity-1.4.2.dist-info/METADATA' 2023-07-28T22:38:14,680 adding 's4_clarity-1.4.2.dist-info/WHEEL' 2023-07-28T22:38:14,681 adding 's4_clarity-1.4.2.dist-info/top_level.txt' 2023-07-28T22:38:14,685 adding 's4_clarity-1.4.2.dist-info/RECORD' 2023-07-28T22:38:14,692 removing build/bdist.linux-armv7l/wheel 2023-07-28T22:38:14,884 Building wheel for s4-clarity (setup.py): finished with status 'done' 2023-07-28T22:38:14,894 Created wheel for s4-clarity: filename=s4_clarity-1.4.2-py2.py3-none-any.whl size=91481 sha256=43fbeffa2d2e499717c44d42919f36319e1901d2437238833de88998b28ee49e 2023-07-28T22:38:14,896 Stored in directory: /tmp/pip-ephem-wheel-cache-a0onkuw8/wheels/94/e3/fe/2691bfd3d3be1ea9a26168185b80045b32f553508022cd900e 2023-07-28T22:38:14,929 Successfully built s4-clarity 2023-07-28T22:38:14,944 Removed build tracker: '/tmp/pip-build-tracker-3umayopn'