2023-07-31T09:29:06,201 Created temporary directory: /tmp/pip-build-tracker-p15ru9zz 2023-07-31T09:29:06,202 Initialized build tracking at /tmp/pip-build-tracker-p15ru9zz 2023-07-31T09:29:06,202 Created build tracker: /tmp/pip-build-tracker-p15ru9zz 2023-07-31T09:29:06,202 Entered build tracker: /tmp/pip-build-tracker-p15ru9zz 2023-07-31T09:29:06,203 Created temporary directory: /tmp/pip-wheel-b2n45whn 2023-07-31T09:29:06,206 Created temporary directory: /tmp/pip-ephem-wheel-cache-6plvj74f 2023-07-31T09:29:06,232 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-31T09:29:06,235 2 location(s) to search for versions of splam: 2023-07-31T09:29:06,235 * https://pypi.org/simple/splam/ 2023-07-31T09:29:06,235 * https://www.piwheels.org/simple/splam/ 2023-07-31T09:29:06,235 Fetching project page and analyzing links: https://pypi.org/simple/splam/ 2023-07-31T09:29:06,236 Getting page https://pypi.org/simple/splam/ 2023-07-31T09:29:06,238 Found index url https://pypi.org/simple/ 2023-07-31T09:29:06,297 Fetched page https://pypi.org/simple/splam/ as application/vnd.pypi.simple.v1+json 2023-07-31T09:29:06,304 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/57/2a/d68f86c46b3152c9072975cb1c8b3f2345e0f71cea763c0635ca8c5e0261/splam-0.2.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,304 Found link https://files.pythonhosted.org/packages/ba/e8/4cf0f802bf26fd6587829e3688109caef6d26e13d19ce003ac876212da15/splam-0.2.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.9 2023-07-31T09:29:06,305 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f0/97/c31f00ac8a786213c4a50dd993cd04e61af08766e9559f244fb9c3929178/splam-0.2.10-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,305 Found link https://files.pythonhosted.org/packages/72/d1/671663c98d0cfca3218b880633390493fcebf9972175a7c4d2752259f2ea/splam-0.2.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.10 2023-07-31T09:29:06,305 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/ad/36/84239a43f206dfbfe07c6e6f76ef8c54235439210640aeacc8cb20e24c2e/splam-0.2.11-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,306 Found link https://files.pythonhosted.org/packages/c7/b3/96a175c203358d735694d7d5fd9261ef8683af968e14e473e823d159cee1/splam-0.2.11.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.11 2023-07-31T09:29:06,306 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/a5/f5/e15307ccb65ec9c225b7f1af65ee2c8880ba8eb049d386f4c9da459b2e1e/splam-0.2.12-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,307 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ba/88/6cac004352d4aa92aabdfd31f9b96919f8044db486185d3fd3c924583bc8/splam-0.2.12-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,307 Found link https://files.pythonhosted.org/packages/32/fa/a9795e9df88e8ea6c6788ae171702d5f9d8ce2c3472408ab0784f08a7b91/splam-0.2.12.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.12 2023-07-31T09:29:06,307 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/59/88/fefee12f8e44d6879a0970d37b42fc4dc54010f78b1ee91f6db366c1f125/splam-0.2.13-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,308 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/64/13/d601e5e99b31891d95bc0a6201367dab38f12faaadcb6aedbee7725dca71/splam-0.2.13-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,308 Found link https://files.pythonhosted.org/packages/cf/fb/2e5425fcdb2e5fd7ff963b174b1582816154fd0373bbc96edf4e851d272d/splam-0.2.13.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.13 2023-07-31T09:29:06,308 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/da/65/a129eabb1d673da72f1d7dfd3495c01c89da78569b7f2dba2c746a0c0f29/splam-0.2.14-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,309 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/79/2fdaa68664126c8c71bac526b41e1e35e4195879170c8129a8d482f3ae7b/splam-0.2.14-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,309 Found link https://files.pythonhosted.org/packages/9b/3f/d7dd2411528494ed5062665c3b5d5d7d8422fd11fa181d5fc01ea67d7dbf/splam-0.2.14.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.14 2023-07-31T09:29:06,310 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f4/9a/e7d1f5f16d77888ac5d0935e180fa2210e875ff487909519d6871e1301da/splam-0.2.15-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,310 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/40/b6/eda61824794c736e52c09353dfbbd70eea4d0f0ab31896f3688d269ab64b/splam-0.2.15-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,310 Found link https://files.pythonhosted.org/packages/29/d0/5e9ef93e49636308cb56b70a06c8932321cb60a4aae678d8bb1d213b52b5/splam-0.2.15.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.15 2023-07-31T09:29:06,310 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e5/17/caa4b05a6370f2d197ec174fe1968f63acc357db5923efca0860b3a5e141/splam-0.2.16-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,311 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fe/a5/d90a02293e34acf5515a8f435ae90afeb823336d6232a7bedf01436a00f9/splam-0.2.17-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,311 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ef/af/7db5183d8c36a250bb4547c58610624b4d1067ea0eb119addc8986ce6ec1/splam-0.2.17-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,311 Found link https://files.pythonhosted.org/packages/26/3a/0e89dd56f9617853061d7c4ed6a220a414a01bba9f0005e54da52a1ad22e/splam-0.2.17.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.17 2023-07-31T09:29:06,312 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/bd/50/ae02dcd9e7c53df59acc9ad83ac389a886e55254cd6953614d43f0eaac60/splam-0.3.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,312 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/78/0b/8b0b45b16922007f88c9b81357cde8b84f9ea45327104b00724024e722ec/splam-0.3.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,312 Found link https://files.pythonhosted.org/packages/e5/c7/4bf13e849aefc7cfdd94f142e6267e4937c61d7fb9fbfe1119953f6a5e72/splam-0.3.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.3.0 2023-07-31T09:29:06,313 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/55/d8079e937d1f568ac9358237871b9d4d6d28abf1e8e8ec2b8073db7b166a/splam-0.3.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,313 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6d/9f/5e7c396bd04da9866f89f51574bd3fec1e691b279116e4d4de92b75b6538/splam-1.0.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,313 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/56/ae/c9e443ec09db88b2b2aaa18ebc6b12751b321d731ce21964ee188067bb0f/splam-1.0.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,314 Found link https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.0 2023-07-31T09:29:06,314 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/43/45/27c64605655d3127bf6155bc060f98fb565e631553e4f0e0a53d3922ebf3/splam-1.0.1-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,314 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/4d/0b5427df4d5d74ba5a98e28805b45fee4b15d2cad1e9aa91069306c29da7/splam-1.0.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,314 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/da/e1/11ee65eb50a2f628f92249d84cd72eddbc1386afbc82c7410fceb627d995/splam-1.0.1-py3.9-linux-x86_64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,315 Found link https://files.pythonhosted.org/packages/ad/3c/5a2fcc44ca9afa6bc1cb4fe6a30ba6495f9c1359c6b610536cb6c7998ca1/splam-1.0.1.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.1 2023-07-31T09:29:06,315 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6a/e7/e7827b0d637f018ef8d18ea969985ce37ffa520fd1bf6d0e8d43d72b749e/splam-1.0.2-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,315 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f2/ba/94da0985b6db88ba663b4e56a395d74d04283a79d0fdf476763251f5679f/splam-1.0.2-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,316 Found link https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.2 2023-07-31T09:29:06,316 Fetching project page and analyzing links: https://www.piwheels.org/simple/splam/ 2023-07-31T09:29:06,317 Getting page https://www.piwheels.org/simple/splam/ 2023-07-31T09:29:06,318 Found index url https://www.piwheels.org/simple/ 2023-07-31T09:29:06,472 Fetched page https://www.piwheels.org/simple/splam/ as text/html 2023-07-31T09:29:06,482 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.2-cp37-cp37m-linux_armv7l.whl#sha256=0da1ce51d76a21042b3077b98b6ada39416083c473650dd277efe9003015c43f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,482 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.2-cp37-cp37m-linux_armv6l.whl#sha256=0da1ce51d76a21042b3077b98b6ada39416083c473650dd277efe9003015c43f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,482 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=c18773cbb40b6f9c9732a88256f613f6c52b279fcd6ab28bbafa17768ae51a09 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,483 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=c18773cbb40b6f9c9732a88256f613f6c52b279fcd6ab28bbafa17768ae51a09 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,483 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=1df2348f054c2c94911b9f0f12cb53ffd0d73bbb7a08e64ea0c6783ceee0aff8 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,483 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=1df2348f054c2c94911b9f0f12cb53ffd0d73bbb7a08e64ea0c6783ceee0aff8 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,483 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=a8181a29dd75196ac29a057a71ae8aa567d3180e65dbefd5f00ffc44d6ceaabb (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,483 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=a8181a29dd75196ac29a057a71ae8aa567d3180e65dbefd5f00ffc44d6ceaabb (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,484 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=db7f7a90b02b4b219de50c195ee1ca9b24be11aa7f75c3972daa508e5af03ed7 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,484 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=db7f7a90b02b4b219de50c195ee1ca9b24be11aa7f75c3972daa508e5af03ed7 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,484 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp39-cp39-linux_armv7l.whl#sha256=c3a1b0ed2154e6f57b99c5dc2f09741faf5870038b8f86b488481cbc1cea6038 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,484 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp39-cp39-linux_armv6l.whl#sha256=c3a1b0ed2154e6f57b99c5dc2f09741faf5870038b8f86b488481cbc1cea6038 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,484 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp37-cp37m-linux_armv7l.whl#sha256=e995d4cf8f5f1d21c7acb05a431d0a13318d1dfb4fff327949db624e7b3d4406 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,485 Skipping link: No binaries permitted for splam: 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https://www.piwheels.org/simple/splam/splam-0.2.15-cp37-cp37m-linux_armv7l.whl#sha256=0a4fa9a067616033f881d9c22e1276e29cc4428f1241db0d262c13609379e2cf (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,485 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp37-cp37m-linux_armv6l.whl#sha256=0a4fa9a067616033f881d9c22e1276e29cc4428f1241db0d262c13609379e2cf (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,486 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv7l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,486 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv6l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,486 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp37-cp37m-linux_armv7l.whl#sha256=198f24795b97dfeeb87bfd8760ef5894be763c7c872f489ea0c4292c781067b6 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,486 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp37-cp37m-linux_armv6l.whl#sha256=198f24795b97dfeeb87bfd8760ef5894be763c7c872f489ea0c4292c781067b6 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,486 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv7l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,486 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv6l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,487 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv7l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,487 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv6l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,487 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv7l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,487 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv6l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,487 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv7l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,488 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv6l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,488 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv7l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,488 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv6l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,488 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv7l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,488 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv6l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-31T09:29:06,489 Skipping link: not a file: https://www.piwheels.org/simple/splam/ 2023-07-31T09:29:06,489 Skipping link: not a file: https://pypi.org/simple/splam/ 2023-07-31T09:29:06,508 Given no hashes to check 1 links for project 'splam': discarding no candidates 2023-07-31T09:29:06,524 Collecting splam==1.0.2 2023-07-31T09:29:06,526 Created temporary directory: /tmp/pip-unpack-7nxw7k8t 2023-07-31T09:29:06,574 Downloading splam-1.0.2.tar.gz (40.6 MB) 2023-07-31T09:29:12,819 Added splam==1.0.2 from https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-p15ru9zz' 2023-07-31T09:29:12,821 Running setup.py (path:/tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/setup.py) egg_info for package splam 2023-07-31T09:29:12,822 Created temporary directory: /tmp/pip-pip-egg-info-w7wp24cy 2023-07-31T09:29:12,822 Preparing metadata (setup.py): started 2023-07-31T09:29:12,823 Running command python setup.py egg_info 2023-07-31T09:29:13,611 running egg_info 2023-07-31T09:29:13,612 creating /tmp/pip-pip-egg-info-w7wp24cy/splam.egg-info 2023-07-31T09:29:13,638 writing /tmp/pip-pip-egg-info-w7wp24cy/splam.egg-info/PKG-INFO 2023-07-31T09:29:13,640 writing dependency_links to /tmp/pip-pip-egg-info-w7wp24cy/splam.egg-info/dependency_links.txt 2023-07-31T09:29:13,641 writing entry points to /tmp/pip-pip-egg-info-w7wp24cy/splam.egg-info/entry_points.txt 2023-07-31T09:29:13,643 writing requirements to /tmp/pip-pip-egg-info-w7wp24cy/splam.egg-info/requires.txt 2023-07-31T09:29:13,644 writing top-level names to /tmp/pip-pip-egg-info-w7wp24cy/splam.egg-info/top_level.txt 2023-07-31T09:29:13,645 writing manifest file '/tmp/pip-pip-egg-info-w7wp24cy/splam.egg-info/SOURCES.txt' 2023-07-31T09:29:13,733 reading manifest file '/tmp/pip-pip-egg-info-w7wp24cy/splam.egg-info/SOURCES.txt' 2023-07-31T09:29:13,735 reading manifest template 'MANIFEST.in' 2023-07-31T09:29:13,995 adding license file 'LICENSE' 2023-07-31T09:29:14,038 writing manifest file '/tmp/pip-pip-egg-info-w7wp24cy/splam.egg-info/SOURCES.txt' 2023-07-31T09:29:14,112 Preparing metadata (setup.py): finished with status 'done' 2023-07-31T09:29:14,118 Source in /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f has version 1.0.2, which satisfies requirement splam==1.0.2 from https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz 2023-07-31T09:29:14,119 Removed splam==1.0.2 from https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-p15ru9zz' 2023-07-31T09:29:14,125 Created temporary directory: /tmp/pip-unpack-sg1yujlo 2023-07-31T09:29:14,125 Building wheels for collected packages: splam 2023-07-31T09:29:14,129 Created temporary directory: /tmp/pip-wheel-g997bjds 2023-07-31T09:29:14,130 Building wheel for splam (setup.py): started 2023-07-31T09:29:14,131 Destination directory: /tmp/pip-wheel-g997bjds 2023-07-31T09:29:14,131 Running command python setup.py bdist_wheel 2023-07-31T09:29:14,933 running bdist_wheel 2023-07-31T09:29:15,014 running build 2023-07-31T09:29:15,015 running build_py 2023-07-31T09:29:15,044 creating build 2023-07-31T09:29:15,044 creating build/lib.linux-armv7l-cpython-39 2023-07-31T09:29:15,047 creating build/lib.linux-armv7l-cpython-39/splam 2023-07-31T09:29:15,048 copying splam/clean_gff.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-31T09:29:15,051 copying splam/prediction.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-31T09:29:15,053 copying splam/SPLAM.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-31T09:29:15,055 copying splam/config.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-31T09:29:15,057 copying splam/main.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-31T09:29:15,059 copying splam/extract_gff.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-31T09:29:15,061 copying splam/__init__.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-31T09:29:15,062 copying splam/chr_size.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-31T09:29:15,065 copying splam/header.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-31T09:29:15,067 copying splam/parse.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-31T09:29:15,070 running build_ext 2023-07-31T09:29:15,417 -- The C compiler identification is GNU 10.2.1 2023-07-31T09:29:15,749 -- The CXX compiler identification is GNU 10.2.1 2023-07-31T09:29:15,796 -- Detecting C compiler ABI info 2023-07-31T09:29:16,205 -- Detecting C compiler ABI info - done 2023-07-31T09:29:16,264 -- Check for working C compiler: /usr/bin/cc - skipped 2023-07-31T09:29:16,266 -- Detecting C compile features 2023-07-31T09:29:16,268 -- Detecting C compile features - done 2023-07-31T09:29:16,292 -- Detecting CXX compiler ABI info 2023-07-31T09:29:16,693 -- Detecting CXX compiler ABI info - done 2023-07-31T09:29:16,755 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-07-31T09:29:16,757 -- Detecting CXX compile features 2023-07-31T09:29:16,760 -- Detecting CXX compile features - done 2023-07-31T09:29:16,788 -- pybind11 v2.11.0 dev1 2023-07-31T09:29:16,851 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3.6") 2023-07-31T09:29:17,364 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so 2023-07-31T09:29:17,372 -- Performing Test HAS_FLTO 2023-07-31T09:29:18,176 -- Performing Test HAS_FLTO - Success 2023-07-31T09:29:18,222 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 2023-07-31T09:29:18,223 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/include/htslib 2023-07-31T09:29:18,223 LIBRARY_OUTPUT_DIRECTORY: 2023-07-31T09:29:18,356 EXAMPLE_VERSION_INFO: 1.0.2 2023-07-31T09:29:18,358 -- Configuring done 2023-07-31T09:29:18,452 -- Generating done 2023-07-31T09:29:18,468 -- Build files have been written to: /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/build/temp.linux-armv7l-cpython-39/splam_extract 2023-07-31T09:29:18,541 gmake: Warning: File 'Makefile' has modification time 0.13 s in the future 2023-07-31T09:29:18,634 gmake[1]: Warning: File 'CMakeFiles/Makefile2' has modification time 0.063 s in the future 2023-07-31T09:29:18,641 gmake[2]: Warning: File 'CMakeFiles/htslib.dir/progress.make' has modification time 0.052 s in the future 2023-07-31T09:29:18,683 Scanning dependencies of target htslib 2023-07-31T09:29:18,686 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-07-31T09:29:18,733 [ 2%] Creating directories for 'htslib' 2023-07-31T09:29:19,066 [ 5%] No download step for 'htslib' 2023-07-31T09:29:19,184 [ 8%] No update step for 'htslib' 2023-07-31T09:29:19,335 [ 11%] No patch step for 'htslib' 2023-07-31T09:29:19,452 [ 14%] Performing configure step for 'htslib' 2023-07-31T09:29:25,753 checking for gcc... gcc 2023-07-31T09:29:26,013 checking whether the C compiler works... yes 2023-07-31T09:29:26,016 checking for C compiler default output file name... a.out 2023-07-31T09:29:26,209 checking for suffix of executables... 2023-07-31T09:29:26,394 checking whether we are cross compiling... no 2023-07-31T09:29:26,481 checking for suffix of object files... o 2023-07-31T09:29:26,560 checking whether we are using the GNU C compiler... yes 2023-07-31T09:29:26,638 checking whether gcc accepts -g... yes 2023-07-31T09:29:26,759 checking for gcc option to accept ISO C89... none needed 2023-07-31T09:29:26,761 checking for ranlib... ranlib 2023-07-31T09:29:26,769 checking for grep that handles long lines and -e... /usr/bin/grep 2023-07-31T09:29:26,865 checking for C compiler warning flags... -Wall 2023-07-31T09:29:27,035 checking how to run the C preprocessor... gcc -E 2023-07-31T09:29:27,188 checking for egrep... /usr/bin/grep -E 2023-07-31T09:29:27,692 checking for ANSI C header files... yes 2023-07-31T09:29:27,812 checking for sys/types.h... yes 2023-07-31T09:29:27,946 checking for sys/stat.h... yes 2023-07-31T09:29:28,104 checking for stdlib.h... yes 2023-07-31T09:29:28,285 checking for string.h... yes 2023-07-31T09:29:28,427 checking for memory.h... yes 2023-07-31T09:29:28,568 checking for strings.h... yes 2023-07-31T09:29:28,716 checking for inttypes.h... yes 2023-07-31T09:29:28,861 checking for stdint.h... yes 2023-07-31T09:29:29,052 checking for unistd.h... yes 2023-07-31T09:29:29,221 checking whether _XOPEN_SOURCE is declared... no 2023-07-31T09:29:29,389 checking C compiler flags needed for ssse3... none 2023-07-31T09:29:29,558 checking C compiler flags needed for popcnt... none 2023-07-31T09:29:29,728 checking C compiler flags needed for sse4.1... none 2023-07-31T09:29:29,938 checking C compiler flags needed for avx2... none 2023-07-31T09:29:30,107 checking C compiler flags needed for avx512f... none 2023-07-31T09:29:30,110 checking for pkg-config... /usr/bin/pkg-config 2023-07-31T09:29:30,116 checking pkg-config is at least version 0.9.0... yes 2023-07-31T09:29:30,118 checking for special C compiler options needed for large files... no 2023-07-31T09:29:30,294 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-07-31T09:29:30,309 checking shared library type for unknown-Linux... plain .so 2023-07-31T09:29:30,479 checking whether the linker supports versioned symbols... yes 2023-07-31T09:29:30,683 checking whether the compiler accepts -fvisibility=hidden... yes 2023-07-31T09:29:30,696 checking for stdlib.h... (cached) yes 2023-07-31T09:29:30,720 checking for unistd.h... (cached) yes 2023-07-31T09:29:30,886 checking for sys/param.h... yes 2023-07-31T09:29:31,084 checking for getpagesize... yes 2023-07-31T09:29:31,406 checking for working mmap... yes 2023-07-31T09:29:31,652 checking for gmtime_r... yes 2023-07-31T09:29:31,855 checking for fsync... yes 2023-07-31T09:29:32,059 checking for drand48... yes 2023-07-31T09:29:32,290 checking for srand48_deterministic... no 2023-07-31T09:29:32,512 checking whether fdatasync is declared... yes 2023-07-31T09:29:32,692 checking for fdatasync... yes 2023-07-31T09:29:33,092 checking for library containing log... -lm 2023-07-31T09:29:33,193 checking for zlib.h... yes 2023-07-31T09:29:33,398 checking for inflate in -lz... yes 2023-07-31T09:29:33,585 checking for library containing recv... none required 2023-07-31T09:29:33,675 checking for bzlib.h... yes 2023-07-31T09:29:33,855 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-07-31T09:29:33,869 checking whether htscodecs files are present... yes 2023-07-31T09:29:33,870 configure: WARNING: GCS support not enabled: requires libcurl support 2023-07-31T09:29:33,871 configure: WARNING: S3 support not enabled: requires libcurl support 2023-07-31T09:29:34,071 checking for library containing regcomp... none required 2023-07-31T09:29:34,152 configure: creating ./config.status 2023-07-31T09:29:34,483 config.status: creating config.mk 2023-07-31T09:29:34,527 config.status: creating htslib.pc.tmp 2023-07-31T09:29:34,578 config.status: creating config.h 2023-07-31T09:29:34,613 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-07-31T09:29:34,777 [ 17%] Performing build step for 'htslib' 2023-07-31T09:29:38,323 Updating htscodecs/htscodecs/version.h : #define HTSCODECS_VERSION_TEXT "1.5.1" 2023-07-31T09:30:32,693 [ 20%] No install step for 'htslib' 2023-07-31T09:30:32,810 [ 22%] Completed 'htslib' 2023-07-31T09:30:32,964 [ 22%] Built target htslib 2023-07-31T09:30:33,190 Scanning dependencies of target splam_clean 2023-07-31T09:30:33,206 gmake[2]: Warning: File 'CMakeFiles/splam_clean.dir/depend.make' has modification time 0.22 s in the future 2023-07-31T09:30:33,259 [ 25%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-07-31T09:30:38,538 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-07-31T09:30:38,539 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,539 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-07-31T09:30:38,539 | ^~~~~~~~~~ 2023-07-31T09:30:38,539 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,539 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-07-31T09:30:38,539 | ^~~~~~ 2023-07-31T09:30:38,540 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,540 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-07-31T09:30:38,540 | ^~~~ 2023-07-31T09:30:38,540 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,540 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-07-31T09:30:38,540 | ^~~~ 2023-07-31T09:30:38,541 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,541 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-07-31T09:30:38,541 | ^~~~~~~~~~ 2023-07-31T09:30:38,541 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,541 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-07-31T09:30:38,541 | ^~~~~~ 2023-07-31T09:30:38,542 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,542 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-07-31T09:30:38,542 | ^~~~ 2023-07-31T09:30:38,542 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,542 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-07-31T09:30:38,542 | ^~~~ 2023-07-31T09:30:38,542 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,543 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-31T09:30:38,543 | ^~~~~~~~~~ 2023-07-31T09:30:38,543 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,543 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-31T09:30:38,543 | ^~~~~~~ 2023-07-31T09:30:38,543 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,543 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-31T09:30:38,543 | ^~~~ 2023-07-31T09:30:38,544 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,544 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-31T09:30:38,544 | ^~~~ 2023-07-31T09:30:38,544 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,544 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-31T09:30:38,544 | ^~~~ 2023-07-31T09:30:38,544 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,544 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-31T09:30:38,545 | ^~~~~~~~~~ 2023-07-31T09:30:38,545 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,545 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-31T09:30:38,545 | ^~~~~~~ 2023-07-31T09:30:38,545 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,546 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-31T09:30:38,546 | ^~~~ 2023-07-31T09:30:38,546 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,546 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-31T09:30:38,546 | ^~~~ 2023-07-31T09:30:38,546 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:30:38,546 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-31T09:30:38,547 | ^~~~ 2023-07-31T09:30:43,534 [ 28%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-07-31T09:30:51,563 [ 31%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-07-31T09:30:52,077 [ 34%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-07-31T09:30:52,578 [ 37%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-07-31T09:30:52,886 [ 40%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-07-31T09:30:54,676 [ 42%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-07-31T09:30:57,391 [ 45%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-07-31T09:31:01,383 [ 48%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-07-31T09:31:05,943 [ 51%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-07-31T09:31:10,104 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-07-31T09:31:14,170 [ 57%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-07-31T09:31:17,668 [ 60%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-07-31T09:31:19,888 [ 62%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-07-31T09:31:20,965 [ 65%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-07-31T09:31:21,751 [ 68%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-07-31T09:31:22,702 [ 71%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so 2023-07-31T09:31:43,716 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-07-31T09:31:43,770 [ 71%] Built target splam_clean 2023-07-31T09:31:43,925 Scanning dependencies of target splam_extract 2023-07-31T09:31:43,939 gmake[2]: Warning: File 'CMakeFiles/splam_extract.dir/depend.make' has modification time 0.22 s in the future 2023-07-31T09:31:43,979 [ 74%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-07-31T09:31:54,149 [ 77%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-07-31T09:31:58,139 [ 80%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-07-31T09:32:00,850 [ 82%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-07-31T09:32:04,932 [ 85%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-07-31T09:32:08,425 [ 88%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-07-31T09:32:10,638 [ 91%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-07-31T09:32:11,709 [ 94%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-07-31T09:32:12,497 [ 97%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-07-31T09:32:13,454 [100%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so 2023-07-31T09:32:27,732 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-07-31T09:32:27,733 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/include/gclib/GVec.hh:107:14: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-07-31T09:32:27,733 107 | fArray=new OBJ[NewCapacity]; 2023-07-31T09:32:27,733 | ^ 2023-07-31T09:32:27,734 /usr/include/c++/10/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-07-31T09:32:27,734 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-07-31T09:32:27,734 | ^ 2023-07-31T09:32:36,145 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-07-31T09:32:36,191 [100%] Built target splam_extract 2023-07-31T09:32:36,194 gmake[1]: warning: Clock skew detected. Your build may be incomplete. 2023-07-31T09:32:36,242 gmake: warning: Clock skew detected. Your build may be incomplete. 2023-07-31T09:32:36,608 -- The C compiler identification is GNU 10.2.1 2023-07-31T09:32:36,941 -- The CXX compiler identification is GNU 10.2.1 2023-07-31T09:32:36,988 -- Detecting C compiler ABI info 2023-07-31T09:32:37,377 -- Detecting C compiler ABI info - done 2023-07-31T09:32:37,438 -- Check for working C compiler: /usr/bin/cc - skipped 2023-07-31T09:32:37,439 -- Detecting C compile features 2023-07-31T09:32:37,442 -- Detecting C compile features - done 2023-07-31T09:32:37,466 -- Detecting CXX compiler ABI info 2023-07-31T09:32:37,868 -- Detecting CXX compiler ABI info - done 2023-07-31T09:32:37,931 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-07-31T09:32:37,932 -- Detecting CXX compile features 2023-07-31T09:32:37,935 -- Detecting CXX compile features - done 2023-07-31T09:32:37,960 -- pybind11 v2.11.0 dev1 2023-07-31T09:32:38,026 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3.6") 2023-07-31T09:32:38,532 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so 2023-07-31T09:32:38,540 -- Performing Test HAS_FLTO 2023-07-31T09:32:39,133 -- Performing Test HAS_FLTO - Success 2023-07-31T09:32:39,174 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 2023-07-31T09:32:39,175 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/include/htslib 2023-07-31T09:32:39,175 LIBRARY_OUTPUT_DIRECTORY: 2023-07-31T09:32:39,313 EXAMPLE_VERSION_INFO: 1.0.2 2023-07-31T09:32:39,315 -- Configuring done 2023-07-31T09:32:39,402 -- Generating done 2023-07-31T09:32:39,416 -- Build files have been written to: /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/build/temp.linux-armv7l-cpython-39/splam_clean 2023-07-31T09:32:39,479 gmake: Warning: File 'Makefile' has modification time 0.15 s in the future 2023-07-31T09:32:39,571 gmake[1]: Warning: File 'CMakeFiles/Makefile2' has modification time 0.074 s in the future 2023-07-31T09:32:39,578 gmake[2]: Warning: File 'CMakeFiles/htslib.dir/progress.make' has modification time 0.063 s in the future 2023-07-31T09:32:39,620 Scanning dependencies of target htslib 2023-07-31T09:32:39,623 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-07-31T09:32:39,631 gmake[2]: Warning: File 'CMakeFiles/htslib.dir/progress.make' has modification time 0.0099 s in the future 2023-07-31T09:32:39,675 [ 2%] Creating directories for 'htslib' 2023-07-31T09:32:40,011 [ 5%] No download step for 'htslib' 2023-07-31T09:32:40,154 [ 8%] No update step for 'htslib' 2023-07-31T09:32:40,275 [ 11%] No patch step for 'htslib' 2023-07-31T09:32:40,390 [ 14%] Performing configure step for 'htslib' 2023-07-31T09:32:44,942 checking for gcc... gcc 2023-07-31T09:32:45,309 checking whether the C compiler works... yes 2023-07-31T09:32:45,310 checking for C compiler default output file name... a.out 2023-07-31T09:32:45,479 checking for suffix of executables... 2023-07-31T09:32:45,661 checking whether we are cross compiling... no 2023-07-31T09:32:45,750 checking for suffix of object files... o 2023-07-31T09:32:45,829 checking whether we are using the GNU C compiler... yes 2023-07-31T09:32:45,908 checking whether gcc accepts -g... yes 2023-07-31T09:32:46,032 checking for gcc option to accept ISO C89... none needed 2023-07-31T09:32:46,035 checking for ranlib... ranlib 2023-07-31T09:32:46,046 checking for grep that handles long lines and -e... /usr/bin/grep 2023-07-31T09:32:46,152 checking for C compiler warning flags... -Wall 2023-07-31T09:32:46,265 checking how to run the C preprocessor... gcc -E 2023-07-31T09:32:46,377 checking for egrep... /usr/bin/grep -E 2023-07-31T09:32:46,832 checking for ANSI C header files... yes 2023-07-31T09:32:46,989 checking for sys/types.h... yes 2023-07-31T09:32:47,127 checking for sys/stat.h... yes 2023-07-31T09:32:47,266 checking for stdlib.h... yes 2023-07-31T09:32:47,408 checking for string.h... yes 2023-07-31T09:32:47,549 checking for memory.h... yes 2023-07-31T09:32:47,706 checking for strings.h... yes 2023-07-31T09:32:47,896 checking for inttypes.h... yes 2023-07-31T09:32:48,045 checking for stdint.h... yes 2023-07-31T09:32:48,203 checking for unistd.h... yes 2023-07-31T09:32:48,377 checking whether _XOPEN_SOURCE is declared... no 2023-07-31T09:32:48,550 checking C compiler flags needed for ssse3... none 2023-07-31T09:32:48,756 checking C compiler flags needed for popcnt... none 2023-07-31T09:32:48,927 checking C compiler flags needed for sse4.1... none 2023-07-31T09:32:49,099 checking C compiler flags needed for avx2... none 2023-07-31T09:32:49,272 checking C compiler flags needed for avx512f... none 2023-07-31T09:32:49,275 checking for pkg-config... /usr/bin/pkg-config 2023-07-31T09:32:49,281 checking pkg-config is at least version 0.9.0... yes 2023-07-31T09:32:49,283 checking for special C compiler options needed for large files... no 2023-07-31T09:32:49,495 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-07-31T09:32:49,511 checking shared library type for unknown-Linux... plain .so 2023-07-31T09:32:49,681 checking whether the linker supports versioned symbols... yes 2023-07-31T09:32:49,854 checking whether the compiler accepts -fvisibility=hidden... yes 2023-07-31T09:32:49,868 checking for stdlib.h... (cached) yes 2023-07-31T09:32:49,894 checking for unistd.h... (cached) yes 2023-07-31T09:32:50,058 checking for sys/param.h... yes 2023-07-31T09:32:50,284 checking for getpagesize... yes 2023-07-31T09:32:50,596 checking for working mmap... yes 2023-07-31T09:32:50,791 checking for gmtime_r... yes 2023-07-31T09:32:51,002 checking for fsync... yes 2023-07-31T09:32:51,252 checking for drand48... yes 2023-07-31T09:32:51,476 checking for srand48_deterministic... no 2023-07-31T09:32:51,640 checking whether fdatasync is declared... yes 2023-07-31T09:32:51,821 checking for fdatasync... yes 2023-07-31T09:32:52,247 checking for library containing log... -lm 2023-07-31T09:32:52,349 checking for zlib.h... yes 2023-07-31T09:32:52,528 checking for inflate in -lz... yes 2023-07-31T09:32:52,715 checking for library containing recv... none required 2023-07-31T09:32:52,802 checking for bzlib.h... yes 2023-07-31T09:32:52,979 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-07-31T09:32:52,990 checking whether htscodecs files are present... yes 2023-07-31T09:32:52,992 configure: WARNING: GCS support not enabled: requires libcurl support 2023-07-31T09:32:52,992 configure: WARNING: S3 support not enabled: requires libcurl support 2023-07-31T09:32:53,178 checking for library containing regcomp... none required 2023-07-31T09:32:53,242 configure: creating ./config.status 2023-07-31T09:32:53,557 config.status: creating config.mk 2023-07-31T09:32:53,602 config.status: creating htslib.pc.tmp 2023-07-31T09:32:53,651 config.status: creating config.h 2023-07-31T09:32:53,671 config.status: config.h is unchanged 2023-07-31T09:32:53,677 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-07-31T09:32:53,849 [ 17%] Performing build step for 'htslib' 2023-07-31T09:32:54,328 [ 20%] No install step for 'htslib' 2023-07-31T09:32:54,448 [ 22%] Completed 'htslib' 2023-07-31T09:32:54,566 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-07-31T09:32:54,611 [ 22%] Built target htslib 2023-07-31T09:32:54,793 Scanning dependencies of target splam_clean 2023-07-31T09:32:54,809 gmake[2]: Warning: File 'CMakeFiles/splam_clean.dir/depend.make' has modification time 0.22 s in the future 2023-07-31T09:32:54,850 [ 25%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-07-31T09:33:00,103 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-07-31T09:33:00,103 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,104 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-07-31T09:33:00,104 | ^~~~~~~~~~ 2023-07-31T09:33:00,104 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,104 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-07-31T09:33:00,104 | ^~~~~~ 2023-07-31T09:33:00,105 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,105 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-07-31T09:33:00,105 | ^~~~ 2023-07-31T09:33:00,105 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,105 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-07-31T09:33:00,105 | ^~~~ 2023-07-31T09:33:00,105 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,106 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-07-31T09:33:00,106 | ^~~~~~~~~~ 2023-07-31T09:33:00,106 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,106 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-07-31T09:33:00,106 | ^~~~~~ 2023-07-31T09:33:00,106 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,107 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-07-31T09:33:00,107 | ^~~~ 2023-07-31T09:33:00,107 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,107 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-07-31T09:33:00,107 | ^~~~ 2023-07-31T09:33:00,107 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,107 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-31T09:33:00,108 | ^~~~~~~~~~ 2023-07-31T09:33:00,108 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,108 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-31T09:33:00,108 | ^~~~~~~ 2023-07-31T09:33:00,108 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,108 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-31T09:33:00,108 | ^~~~ 2023-07-31T09:33:00,108 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,109 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-31T09:33:00,109 | ^~~~ 2023-07-31T09:33:00,109 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,109 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-31T09:33:00,109 | ^~~~ 2023-07-31T09:33:00,109 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,109 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-31T09:33:00,109 | ^~~~~~~~~~ 2023-07-31T09:33:00,110 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,110 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-31T09:33:00,110 | ^~~~~~~ 2023-07-31T09:33:00,110 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,110 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-31T09:33:00,110 | ^~~~ 2023-07-31T09:33:00,111 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,111 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-31T09:33:00,111 | ^~~~ 2023-07-31T09:33:00,111 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-31T09:33:00,111 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-31T09:33:00,112 | ^~~~ 2023-07-31T09:33:05,114 [ 28%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-07-31T09:33:13,129 [ 31%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-07-31T09:33:13,609 [ 34%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-07-31T09:33:14,114 [ 37%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-07-31T09:33:14,420 [ 40%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-07-31T09:33:16,212 [ 42%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-07-31T09:33:18,906 [ 45%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-07-31T09:33:22,913 [ 48%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-07-31T09:33:27,487 [ 51%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-07-31T09:33:31,656 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-07-31T09:33:35,709 [ 57%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-07-31T09:33:39,235 [ 60%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-07-31T09:33:41,422 [ 62%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-07-31T09:33:42,505 [ 65%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-07-31T09:33:43,291 [ 68%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-07-31T09:33:44,246 [ 71%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so 2023-07-31T09:34:05,256 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-07-31T09:34:05,311 [ 71%] Built target splam_clean 2023-07-31T09:34:05,462 Scanning dependencies of target splam_extract 2023-07-31T09:34:05,477 gmake[2]: Warning: File 'CMakeFiles/splam_extract.dir/depend.make' has modification time 0.22 s in the future 2023-07-31T09:34:05,519 [ 74%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-07-31T09:34:15,760 [ 77%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-07-31T09:34:19,771 [ 80%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-07-31T09:34:22,458 [ 82%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-07-31T09:34:26,502 [ 85%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-07-31T09:34:30,049 [ 88%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-07-31T09:34:32,266 [ 91%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-07-31T09:34:33,344 [ 94%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-07-31T09:34:34,124 [ 97%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-07-31T09:34:35,072 [100%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so 2023-07-31T09:34:49,377 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-07-31T09:34:49,378 /tmp/pip-wheel-b2n45whn/splam_56de11ffd635411c8a30a00a674b7d3f/include/gclib/GVec.hh:107:14: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-07-31T09:34:49,379 107 | fArray=new OBJ[NewCapacity]; 2023-07-31T09:34:49,379 | ^ 2023-07-31T09:34:49,379 /usr/include/c++/10/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-07-31T09:34:49,379 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-07-31T09:34:49,380 | ^ 2023-07-31T09:34:57,543 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-07-31T09:34:57,585 [100%] Built target splam_extract 2023-07-31T09:34:57,588 gmake[1]: warning: Clock skew detected. Your build may be incomplete. 2023-07-31T09:34:57,632 gmake: warning: Clock skew detected. Your build may be incomplete. 2023-07-31T09:34:57,683 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-07-31T09:34:57,683 !! 2023-07-31T09:34:57,683 ******************************************************************************** 2023-07-31T09:34:57,683 Please avoid running ``setup.py`` directly. 2023-07-31T09:34:57,683 Instead, use pypa/build, pypa/installer, pypa/build or 2023-07-31T09:34:57,684 other standards-based tools. 2023-07-31T09:34:57,684 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-07-31T09:34:57,684 ******************************************************************************** 2023-07-31T09:34:57,684 !! 2023-07-31T09:34:57,684 self.initialize_options() 2023-07-31T09:34:57,711 installing to build/bdist.linux-armv7l/wheel 2023-07-31T09:34:57,712 running install 2023-07-31T09:34:57,738 running install_lib 2023-07-31T09:34:57,766 creating build/bdist.linux-armv7l 2023-07-31T09:34:57,766 creating build/bdist.linux-armv7l/wheel 2023-07-31T09:34:57,768 creating build/bdist.linux-armv7l/wheel/splam 2023-07-31T09:34:57,769 copying build/lib.linux-armv7l-cpython-39/splam/clean_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-31T09:34:57,771 copying build/lib.linux-armv7l-cpython-39/splam/prediction.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-31T09:34:57,774 copying build/lib.linux-armv7l-cpython-39/splam/SPLAM.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-31T09:34:57,775 copying build/lib.linux-armv7l-cpython-39/splam/config.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-31T09:34:57,777 copying build/lib.linux-armv7l-cpython-39/splam/main.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-31T09:34:57,779 copying build/lib.linux-armv7l-cpython-39/splam/extract_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-31T09:34:57,781 copying build/lib.linux-armv7l-cpython-39/splam/__init__.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-31T09:34:57,782 copying build/lib.linux-armv7l-cpython-39/splam/chr_size.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-31T09:34:57,785 copying build/lib.linux-armv7l-cpython-39/splam/header.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-31T09:34:57,786 copying build/lib.linux-armv7l-cpython-39/splam/parse.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-31T09:34:57,788 copying build/lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-07-31T09:34:57,836 copying build/lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-07-31T09:34:57,859 running install_egg_info 2023-07-31T09:34:57,928 running egg_info 2023-07-31T09:34:57,953 writing splam.egg-info/PKG-INFO 2023-07-31T09:34:57,955 writing dependency_links to splam.egg-info/dependency_links.txt 2023-07-31T09:34:57,957 writing entry points to splam.egg-info/entry_points.txt 2023-07-31T09:34:57,959 writing requirements to splam.egg-info/requires.txt 2023-07-31T09:34:57,960 writing top-level names to splam.egg-info/top_level.txt 2023-07-31T09:34:57,992 reading manifest file 'splam.egg-info/SOURCES.txt' 2023-07-31T09:34:58,203 reading manifest template 'MANIFEST.in' 2023-07-31T09:34:58,545 adding license file 'LICENSE' 2023-07-31T09:34:58,613 writing manifest file 'splam.egg-info/SOURCES.txt' 2023-07-31T09:34:58,616 Copying splam.egg-info to build/bdist.linux-armv7l/wheel/splam-1.0.2-py3.9.egg-info 2023-07-31T09:34:58,629 running install_scripts 2023-07-31T09:34:58,680 creating build/bdist.linux-armv7l/wheel/splam-1.0.2.dist-info/WHEEL 2023-07-31T09:34:58,683 creating '/tmp/pip-wheel-g997bjds/splam-1.0.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-31T09:34:58,970 adding 'splam_clean.cpython-39-arm-linux-gnueabihf.so' 2023-07-31T09:34:59,233 adding 'splam_extract.cpython-39-arm-linux-gnueabihf.so' 2023-07-31T09:34:59,243 adding 'splam/SPLAM.py' 2023-07-31T09:34:59,244 adding 'splam/__init__.py' 2023-07-31T09:34:59,250 adding 'splam/chr_size.py' 2023-07-31T09:34:59,252 adding 'splam/clean_gff.py' 2023-07-31T09:34:59,253 adding 'splam/config.py' 2023-07-31T09:34:59,254 adding 'splam/extract_gff.py' 2023-07-31T09:34:59,255 adding 'splam/header.py' 2023-07-31T09:34:59,257 adding 'splam/main.py' 2023-07-31T09:34:59,259 adding 'splam/parse.py' 2023-07-31T09:34:59,261 adding 'splam/prediction.py' 2023-07-31T09:34:59,263 adding 'splam-1.0.2.dist-info/LICENSE' 2023-07-31T09:34:59,264 adding 'splam-1.0.2.dist-info/METADATA' 2023-07-31T09:34:59,265 adding 'splam-1.0.2.dist-info/WHEEL' 2023-07-31T09:34:59,266 adding 'splam-1.0.2.dist-info/entry_points.txt' 2023-07-31T09:34:59,267 adding 'splam-1.0.2.dist-info/top_level.txt' 2023-07-31T09:34:59,268 adding 'splam-1.0.2.dist-info/RECORD' 2023-07-31T09:34:59,278 removing build/bdist.linux-armv7l/wheel 2023-07-31T09:34:59,373 Building wheel for splam (setup.py): finished with status 'done' 2023-07-31T09:34:59,386 Created wheel for splam: filename=splam-1.0.2-cp39-cp39-linux_armv7l.whl size=914272 sha256=dfd90ff647e7d082d2fc0c7fb31267ff57904b1f695afa56a45f1edfbe66dd36 2023-07-31T09:34:59,387 Stored in directory: /tmp/pip-ephem-wheel-cache-6plvj74f/wheels/b2/8f/d5/62df777db39d0e0880b54a6856966a296e0992a40fed8c1863 2023-07-31T09:34:59,399 Successfully built splam 2023-07-31T09:34:59,434 Removed build tracker: '/tmp/pip-build-tracker-p15ru9zz'