2023-08-09T05:52:17,949 Created temporary directory: /tmp/pip-build-tracker-6gslcboq 2023-08-09T05:52:17,952 Initialized build tracking at /tmp/pip-build-tracker-6gslcboq 2023-08-09T05:52:17,952 Created build tracker: /tmp/pip-build-tracker-6gslcboq 2023-08-09T05:52:17,952 Entered build tracker: /tmp/pip-build-tracker-6gslcboq 2023-08-09T05:52:17,954 Created temporary directory: /tmp/pip-wheel-g2zt_8st 2023-08-09T05:52:17,962 Created temporary directory: /tmp/pip-ephem-wheel-cache-4v0axvd7 2023-08-09T05:52:18,014 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-09T05:52:18,022 2 location(s) to search for versions of haplodynamics: 2023-08-09T05:52:18,022 * https://pypi.org/simple/haplodynamics/ 2023-08-09T05:52:18,022 * https://www.piwheels.org/simple/haplodynamics/ 2023-08-09T05:52:18,023 Fetching project page and analyzing links: https://pypi.org/simple/haplodynamics/ 2023-08-09T05:52:18,024 Getting page https://pypi.org/simple/haplodynamics/ 2023-08-09T05:52:18,028 Found index url https://pypi.org/simple/ 2023-08-09T05:52:18,213 Fetched page https://pypi.org/simple/haplodynamics/ as application/vnd.pypi.simple.v1+json 2023-08-09T05:52:18,220 Found link https://files.pythonhosted.org/packages/c0/08/d635965c7ba781a404a1174dafb7b14a35f1c75d9ecc64225ec423e4f758/HaploDynamics-0.1b1.tar.gz (from https://pypi.org/simple/haplodynamics/), version: 0.1b1 2023-08-09T05:52:18,221 Found link https://files.pythonhosted.org/packages/fe/40/a1e7f9b4d7554832086c642d44eac7d356b99466381c42475f9b95ea4259/HaploDynamics-0.1b2.tar.gz (from https://pypi.org/simple/haplodynamics/), version: 0.1b2 2023-08-09T05:52:18,221 Found link https://files.pythonhosted.org/packages/ff/b7/ee3221356d66d5cd16d9310fc30dbb3fe4efcc4ee30b8c1e1c6acc36a58e/HaploDynamics-0.1b3.tar.gz (from https://pypi.org/simple/haplodynamics/), version: 0.1b3 2023-08-09T05:52:18,222 Found link https://files.pythonhosted.org/packages/21/e6/544f0527a989ee9d1b64855194c3abb656f5683667df48a87f0aec8cc6c7/HaploDynamics-0.1b4.tar.gz (from https://pypi.org/simple/haplodynamics/), version: 0.1b4 2023-08-09T05:52:18,223 Found link https://files.pythonhosted.org/packages/39/49/52a7bb0a4adff1fa4d929be05274c8c43c16060521ad5ba37d23324dd537/HaploDynamics-0.1b5.tar.gz (from https://pypi.org/simple/haplodynamics/), version: 0.1b5 2023-08-09T05:52:18,224 Found link https://files.pythonhosted.org/packages/e6/e2/f34b1441597501d26a1578418b5f868f0ef52fd48282ea58b6dd6dd641c2/HaploDynamics-0.1b6.tar.gz (from https://pypi.org/simple/haplodynamics/), version: 0.1b6 2023-08-09T05:52:18,224 Found link https://files.pythonhosted.org/packages/43/77/681dd636417a1a943c68a8c648c2f6e52099f25a65101103b185d9f3a12b/HaploDynamics-0.1b7.tar.gz (from https://pypi.org/simple/haplodynamics/), version: 0.1b7 2023-08-09T05:52:18,225 Found link https://files.pythonhosted.org/packages/9b/22/8e429e0c06e4417ddcf5abc981eb55b4a02319909197029dd93991c2fc08/HaploDynamics-0.1b9.tar.gz (from https://pypi.org/simple/haplodynamics/), version: 0.1b9 2023-08-09T05:52:18,226 Found link https://files.pythonhosted.org/packages/c1/59/bac0fc30fdc1ef0be43fb249c219d1523927f3d0a22f1f3074b05e25a5f2/HaploDynamics-0.2b0.tar.gz (from https://pypi.org/simple/haplodynamics/), version: 0.2b0 2023-08-09T05:52:18,226 Found link https://files.pythonhosted.org/packages/c0/2f/fb18c2e91f1571468aa6d501c4d5c86179a362a0271e20c42b42dfd09cfd/HaploDynamics-0.2b1.tar.gz (from https://pypi.org/simple/haplodynamics/), version: 0.2b1 2023-08-09T05:52:18,227 Found link https://files.pythonhosted.org/packages/ee/ae/795a5f70b34f7860a90439890e25d345333ba7e3d0390fde3494bba2cbc6/HaploDynamics-0.2b4.tar.gz (from https://pypi.org/simple/haplodynamics/), version: 0.2b4 2023-08-09T05:52:18,228 Fetching project page and analyzing links: https://www.piwheels.org/simple/haplodynamics/ 2023-08-09T05:52:18,228 Getting page https://www.piwheels.org/simple/haplodynamics/ 2023-08-09T05:52:18,231 Found index url https://www.piwheels.org/simple/ 2023-08-09T05:52:18,473 Fetched page https://www.piwheels.org/simple/haplodynamics/ as text/html 2023-08-09T05:52:18,482 Skipping link: No binaries permitted for haplodynamics: https://www.piwheels.org/simple/haplodynamics/HaploDynamics-0.2b1-py3-none-any.whl#sha256=93c8cfd1679d633f20d662e300eb2b663d2cec668c3e81b6f28aa70668555b9b (from https://www.piwheels.org/simple/haplodynamics/) 2023-08-09T05:52:18,483 Skipping link: No binaries permitted for haplodynamics: https://www.piwheels.org/simple/haplodynamics/HaploDynamics-0.2b0-py3-none-any.whl#sha256=1be767ca5b24256d4b3d60cb94d2f12476471a9247678aee59fb11f8ef4c6b1b (from https://www.piwheels.org/simple/haplodynamics/) 2023-08-09T05:52:18,484 Skipping link: No binaries permitted for haplodynamics: https://www.piwheels.org/simple/haplodynamics/HaploDynamics-0.1b9-py3-none-any.whl#sha256=64430163f00e382b97b7b52b6d170149ae225bed01cd2338580a98980a771554 (from https://www.piwheels.org/simple/haplodynamics/) 2023-08-09T05:52:18,484 Skipping link: No binaries permitted for haplodynamics: https://www.piwheels.org/simple/haplodynamics/HaploDynamics-0.1b7-py3-none-any.whl#sha256=a68cd843a7d8aa03ddd272ac346cc28cce2432dadf0d7882e864d21a5228b660 (from https://www.piwheels.org/simple/haplodynamics/) 2023-08-09T05:52:18,485 Skipping link: No binaries permitted for haplodynamics: https://www.piwheels.org/simple/haplodynamics/HaploDynamics-0.1b6-py3-none-any.whl#sha256=e4b170d443c2899809f5f2c60e3b4f4ee2202c6f9a2e216d338727fc930514d6 (from https://www.piwheels.org/simple/haplodynamics/) 2023-08-09T05:52:18,485 Skipping link: No binaries permitted for haplodynamics: https://www.piwheels.org/simple/haplodynamics/HaploDynamics-0.1b5-py3-none-any.whl#sha256=792dca75ab9cee89bf953de0b91467b39449cb3cd275b7a449473293b6ddd87f (from https://www.piwheels.org/simple/haplodynamics/) 2023-08-09T05:52:18,486 Skipping link: No binaries permitted for haplodynamics: https://www.piwheels.org/simple/haplodynamics/HaploDynamics-0.1b4-py3-none-any.whl#sha256=56cad9cb6b6874e82a37691e3346bd42879bf06b278a4171e68531c381a1f559 (from https://www.piwheels.org/simple/haplodynamics/) 2023-08-09T05:52:18,486 Skipping link: No binaries permitted for haplodynamics: https://www.piwheels.org/simple/haplodynamics/HaploDynamics-0.1b3-py3-none-any.whl#sha256=95411747bd0442ab6671be1f58937099a59b9b1cc1c67710a034014db00d7804 (from https://www.piwheels.org/simple/haplodynamics/) 2023-08-09T05:52:18,487 Skipping link: No binaries permitted for haplodynamics: https://www.piwheels.org/simple/haplodynamics/HaploDynamics-0.1b2-py3-none-any.whl#sha256=ef2b27a3505816011c266f02c3311384eac6cdef5d9006733c49887b2d20851e (from https://www.piwheels.org/simple/haplodynamics/) 2023-08-09T05:52:18,488 Skipping link: No binaries permitted for haplodynamics: https://www.piwheels.org/simple/haplodynamics/HaploDynamics-0.1b1-py3-none-any.whl#sha256=7bd0f90d034700955a128000ca5e28f0e74aa24532617ce3ceb4e67ad3a6048a (from https://www.piwheels.org/simple/haplodynamics/) 2023-08-09T05:52:18,488 Skipping link: not a file: https://www.piwheels.org/simple/haplodynamics/ 2023-08-09T05:52:18,489 Skipping link: not a file: https://pypi.org/simple/haplodynamics/ 2023-08-09T05:52:18,526 Given no hashes to check 1 links for project 'haplodynamics': discarding no candidates 2023-08-09T05:52:18,557 Collecting haplodynamics==0.2b4 2023-08-09T05:52:18,561 Created temporary directory: /tmp/pip-unpack-sluobai3 2023-08-09T05:52:18,733 Downloading HaploDynamics-0.2b4.tar.gz (29 kB) 2023-08-09T05:52:18,837 Added haplodynamics==0.2b4 from https://files.pythonhosted.org/packages/ee/ae/795a5f70b34f7860a90439890e25d345333ba7e3d0390fde3494bba2cbc6/HaploDynamics-0.2b4.tar.gz to build tracker '/tmp/pip-build-tracker-6gslcboq' 2023-08-09T05:52:18,841 Running setup.py (path:/tmp/pip-wheel-g2zt_8st/haplodynamics_6abe5518591f4181afff5985db554a55/setup.py) egg_info for package haplodynamics 2023-08-09T05:52:18,842 Created temporary directory: /tmp/pip-pip-egg-info-83oi_6z5 2023-08-09T05:52:18,843 Preparing metadata (setup.py): started 2023-08-09T05:52:18,849 Running command python setup.py egg_info 2023-08-09T05:52:20,407 running egg_info 2023-08-09T05:52:20,411 creating /tmp/pip-pip-egg-info-83oi_6z5/HaploDynamics.egg-info 2023-08-09T05:52:20,475 writing /tmp/pip-pip-egg-info-83oi_6z5/HaploDynamics.egg-info/PKG-INFO 2023-08-09T05:52:20,480 writing dependency_links to /tmp/pip-pip-egg-info-83oi_6z5/HaploDynamics.egg-info/dependency_links.txt 2023-08-09T05:52:20,485 writing requirements to /tmp/pip-pip-egg-info-83oi_6z5/HaploDynamics.egg-info/requires.txt 2023-08-09T05:52:20,488 writing top-level names to /tmp/pip-pip-egg-info-83oi_6z5/HaploDynamics.egg-info/top_level.txt 2023-08-09T05:52:20,490 writing manifest file '/tmp/pip-pip-egg-info-83oi_6z5/HaploDynamics.egg-info/SOURCES.txt' 2023-08-09T05:52:20,690 reading manifest file '/tmp/pip-pip-egg-info-83oi_6z5/HaploDynamics.egg-info/SOURCES.txt' 2023-08-09T05:52:20,693 adding license file 'LICENSE' 2023-08-09T05:52:20,698 writing manifest file '/tmp/pip-pip-egg-info-83oi_6z5/HaploDynamics.egg-info/SOURCES.txt' 2023-08-09T05:52:20,700 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-08-09T05:52:20,701 !! 2023-08-09T05:52:20,702 ******************************************************************************** 2023-08-09T05:52:20,702 Usage of dash-separated 'description-file' will not be supported in future 2023-08-09T05:52:20,702 versions. Please use the underscore name 'description_file' instead. 2023-08-09T05:52:20,703 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-08-09T05:52:20,703 or your builds will no longer be supported. 2023-08-09T05:52:20,704 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-08-09T05:52:20,705 ******************************************************************************** 2023-08-09T05:52:20,706 !! 2023-08-09T05:52:20,706 opt = self.warn_dash_deprecation(opt, section) 2023-08-09T05:52:20,707 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:520: InformationOnly: Normalizing 'v0.2-beta.4' to '0.2b4' 2023-08-09T05:52:20,707 self._validate_version(self.metadata.version) 2023-08-09T05:52:20,819 Preparing metadata (setup.py): finished with status 'done' 2023-08-09T05:52:20,836 Source in /tmp/pip-wheel-g2zt_8st/haplodynamics_6abe5518591f4181afff5985db554a55 has version 0.2b4, which satisfies requirement haplodynamics==0.2b4 from https://files.pythonhosted.org/packages/ee/ae/795a5f70b34f7860a90439890e25d345333ba7e3d0390fde3494bba2cbc6/HaploDynamics-0.2b4.tar.gz 2023-08-09T05:52:20,838 Removed haplodynamics==0.2b4 from https://files.pythonhosted.org/packages/ee/ae/795a5f70b34f7860a90439890e25d345333ba7e3d0390fde3494bba2cbc6/HaploDynamics-0.2b4.tar.gz from build tracker '/tmp/pip-build-tracker-6gslcboq' 2023-08-09T05:52:20,853 Created temporary directory: /tmp/pip-unpack-8uw4hyhp 2023-08-09T05:52:20,854 Building wheels for collected packages: haplodynamics 2023-08-09T05:52:20,863 Created temporary directory: /tmp/pip-wheel-1qowvqql 2023-08-09T05:52:20,864 Building wheel for haplodynamics (setup.py): started 2023-08-09T05:52:20,866 Destination directory: /tmp/pip-wheel-1qowvqql 2023-08-09T05:52:20,866 Running command python setup.py bdist_wheel 2023-08-09T05:52:22,030 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-08-09T05:52:22,031 !! 2023-08-09T05:52:22,032 ******************************************************************************** 2023-08-09T05:52:22,033 Usage of dash-separated 'description-file' will not be supported in future 2023-08-09T05:52:22,033 versions. Please use the underscore name 'description_file' instead. 2023-08-09T05:52:22,034 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-08-09T05:52:22,034 or your builds will no longer be supported. 2023-08-09T05:52:22,035 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-08-09T05:52:22,035 ******************************************************************************** 2023-08-09T05:52:22,036 !! 2023-08-09T05:52:22,036 opt = self.warn_dash_deprecation(opt, section) 2023-08-09T05:52:22,244 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:520: InformationOnly: Normalizing 'v0.2-beta.4' to '0.2b4' 2023-08-09T05:52:22,245 self._validate_version(self.metadata.version) 2023-08-09T05:52:22,438 running bdist_wheel 2023-08-09T05:52:23,139 running build 2023-08-09T05:52:23,139 running build_py 2023-08-09T05:52:23,214 creating build 2023-08-09T05:52:23,214 creating build/lib 2023-08-09T05:52:23,216 creating build/lib/HaploDynamics 2023-08-09T05:52:23,218 copying HaploDynamics/__init__.py -> build/lib/HaploDynamics 2023-08-09T05:52:23,223 creating build/lib/HaploDynamics/HaploDX 2023-08-09T05:52:23,225 copying HaploDynamics/HaploDX/__init__.py -> build/lib/HaploDynamics/HaploDX 2023-08-09T05:52:23,229 copying HaploDynamics/HaploDX/HaploDX.py -> build/lib/HaploDynamics/HaploDX 2023-08-09T05:52:23,236 creating build/lib/HaploDynamics/Framework 2023-08-09T05:52:23,237 copying HaploDynamics/Framework/__init__.py -> build/lib/HaploDynamics/Framework 2023-08-09T05:52:23,241 copying HaploDynamics/Framework/multiproc.py -> build/lib/HaploDynamics/Framework 2023-08-09T05:52:23,321 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-08-09T05:52:23,322 !! 2023-08-09T05:52:23,322 ******************************************************************************** 2023-08-09T05:52:23,323 Please avoid running ``setup.py`` directly. 2023-08-09T05:52:23,323 Instead, use pypa/build, pypa/installer, pypa/build or 2023-08-09T05:52:23,323 other standards-based tools. 2023-08-09T05:52:23,324 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-08-09T05:52:23,324 ******************************************************************************** 2023-08-09T05:52:23,325 !! 2023-08-09T05:52:23,325 self.initialize_options() 2023-08-09T05:52:23,387 installing to build/bdist.linux-armv7l/wheel 2023-08-09T05:52:23,387 running install 2023-08-09T05:52:23,447 running install_lib 2023-08-09T05:52:23,514 creating build/bdist.linux-armv7l 2023-08-09T05:52:23,516 creating build/bdist.linux-armv7l/wheel 2023-08-09T05:52:23,519 creating build/bdist.linux-armv7l/wheel/HaploDynamics 2023-08-09T05:52:23,521 copying build/lib/HaploDynamics/__init__.py -> build/bdist.linux-armv7l/wheel/HaploDynamics 2023-08-09T05:52:23,526 creating build/bdist.linux-armv7l/wheel/HaploDynamics/HaploDX 2023-08-09T05:52:23,528 copying build/lib/HaploDynamics/HaploDX/__init__.py -> build/bdist.linux-armv7l/wheel/HaploDynamics/HaploDX 2023-08-09T05:52:23,531 copying build/lib/HaploDynamics/HaploDX/HaploDX.py -> build/bdist.linux-armv7l/wheel/HaploDynamics/HaploDX 2023-08-09T05:52:23,537 creating build/bdist.linux-armv7l/wheel/HaploDynamics/Framework 2023-08-09T05:52:23,539 copying build/lib/HaploDynamics/Framework/__init__.py -> build/bdist.linux-armv7l/wheel/HaploDynamics/Framework 2023-08-09T05:52:23,542 copying build/lib/HaploDynamics/Framework/multiproc.py -> build/bdist.linux-armv7l/wheel/HaploDynamics/Framework 2023-08-09T05:52:23,545 running install_egg_info 2023-08-09T05:52:23,703 running egg_info 2023-08-09T05:52:23,765 writing HaploDynamics.egg-info/PKG-INFO 2023-08-09T05:52:23,770 writing dependency_links to HaploDynamics.egg-info/dependency_links.txt 2023-08-09T05:52:23,775 writing requirements to HaploDynamics.egg-info/requires.txt 2023-08-09T05:52:23,777 writing top-level names to HaploDynamics.egg-info/top_level.txt 2023-08-09T05:52:23,846 reading manifest file 'HaploDynamics.egg-info/SOURCES.txt' 2023-08-09T05:52:23,850 adding license file 'LICENSE' 2023-08-09T05:52:23,855 writing manifest file 'HaploDynamics.egg-info/SOURCES.txt' 2023-08-09T05:52:23,858 Copying HaploDynamics.egg-info to build/bdist.linux-armv7l/wheel/HaploDynamics-0.2b4-py3.7.egg-info 2023-08-09T05:52:23,878 running install_scripts 2023-08-09T05:52:23,917 creating build/bdist.linux-armv7l/wheel/HaploDynamics-0.2b4.dist-info/WHEEL 2023-08-09T05:52:23,921 creating '/tmp/pip-wheel-1qowvqql/HaploDynamics-0.2b4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-08-09T05:52:23,926 adding 'HaploDynamics/__init__.py' 2023-08-09T05:52:23,930 adding 'HaploDynamics/Framework/__init__.py' 2023-08-09T05:52:23,932 adding 'HaploDynamics/Framework/multiproc.py' 2023-08-09T05:52:23,939 adding 'HaploDynamics/HaploDX/HaploDX.py' 2023-08-09T05:52:23,942 adding 'HaploDynamics/HaploDX/__init__.py' 2023-08-09T05:52:23,959 adding 'HaploDynamics-0.2b4.dist-info/LICENSE' 2023-08-09T05:52:23,966 adding 'HaploDynamics-0.2b4.dist-info/METADATA' 2023-08-09T05:52:23,968 adding 'HaploDynamics-0.2b4.dist-info/WHEEL' 2023-08-09T05:52:23,970 adding 'HaploDynamics-0.2b4.dist-info/top_level.txt' 2023-08-09T05:52:23,972 adding 'HaploDynamics-0.2b4.dist-info/RECORD' 2023-08-09T05:52:23,975 removing build/bdist.linux-armv7l/wheel 2023-08-09T05:52:24,136 Building wheel for haplodynamics (setup.py): finished with status 'done' 2023-08-09T05:52:24,144 Created wheel for haplodynamics: filename=HaploDynamics-0.2b4-py3-none-any.whl size=24985 sha256=1b80fd4b6b9c6d05e51ba671fb49146d824471869764fcbffae3684356bdeeb6 2023-08-09T05:52:24,146 Stored in directory: /tmp/pip-ephem-wheel-cache-4v0axvd7/wheels/92/aa/42/7b64aac44309361e798fa1edeeb1cc22fd34cd5feec2b9fd3e 2023-08-09T05:52:24,180 Successfully built haplodynamics 2023-08-09T05:52:24,188 Removed build tracker: '/tmp/pip-build-tracker-6gslcboq'