2023-09-08T14:29:36,224 Created temporary directory: /tmp/pip-build-tracker-yu7vnem7 2023-09-08T14:29:36,225 Initialized build tracking at /tmp/pip-build-tracker-yu7vnem7 2023-09-08T14:29:36,226 Created build tracker: /tmp/pip-build-tracker-yu7vnem7 2023-09-08T14:29:36,226 Entered build tracker: /tmp/pip-build-tracker-yu7vnem7 2023-09-08T14:29:36,227 Created temporary directory: /tmp/pip-wheel-sic10ow8 2023-09-08T14:29:36,230 Created temporary directory: /tmp/pip-ephem-wheel-cache-debbjpkr 2023-09-08T14:29:36,254 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-08T14:29:36,257 2 location(s) to search for versions of khmer: 2023-09-08T14:29:36,257 * https://pypi.org/simple/khmer/ 2023-09-08T14:29:36,257 * https://www.piwheels.org/simple/khmer/ 2023-09-08T14:29:36,258 Fetching project page and analyzing links: https://pypi.org/simple/khmer/ 2023-09-08T14:29:36,259 Getting page https://pypi.org/simple/khmer/ 2023-09-08T14:29:36,260 Found index url https://pypi.org/simple/ 2023-09-08T14:29:36,403 Fetched page https://pypi.org/simple/khmer/ as application/vnd.pypi.simple.v1+json 2023-09-08T14:29:36,410 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/a5/8e/d814af49f243e9628cc68cf9a89a290fa761a1acdfbf4044e69bb5f3185b/khmer-0.6-py2.7-linux-x86_64.egg (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,411 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f1/61/71c0e5b337f3fb110d22314a90985f58d2a643c8fe701dd832f7a3b3cbe7/khmer-0.6-py2.7-macosx-10.8-intel.egg (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,411 Found link https://files.pythonhosted.org/packages/b9/d6/e343a534406110221eb690dc3ffa7548f03f2d51c4d9d407bf2e72278861/khmer-0.6.tar.gz (from https://pypi.org/simple/khmer/), version: 0.6 2023-09-08T14:29:36,412 Found link https://files.pythonhosted.org/packages/81/89/085bcb663ac1bd3a0b363b5a1de8f5a1c7d3b10e4a3ec197c976c2911ab9/khmer-0.6.1.tar.gz (from https://pypi.org/simple/khmer/), version: 0.6.1 2023-09-08T14:29:36,412 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/74/ff/a33663f83fd01cd5ffc9903d8116bd3dfc065f1f865db5c91b080991690b/khmer-0.7-cp27-none-macosx_10_8_intel.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,413 Found link https://files.pythonhosted.org/packages/3a/bd/b1eb804f77e6ea99f9db02688c1474628d844e2f59a4f77d7bc00f8c990b/khmer-0.7.tar.gz (from https://pypi.org/simple/khmer/), version: 0.7 2023-09-08T14:29:36,414 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/d5/8b/ae021e29186d3f9ed8cfdd4f8a81db44f7d4105446dc9e119afd908eea21/khmer-0.7.1-cp27-none-macosx_10_8_intel.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,414 Found link https://files.pythonhosted.org/packages/92/11/b17b809e155f35cfc17710ea67b7515b6025e141de6506a4af4e32e32b70/khmer-0.7.1.tar.gz (from https://pypi.org/simple/khmer/), version: 0.7.1 2023-09-08T14:29:36,415 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/84/a8/09ee794b0db1cc2b113a4f2f56beb325769389c35b48f802289d67297e24/khmer-0.8-cp27-none-macosx_10_9_intel.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,415 Found link https://files.pythonhosted.org/packages/31/8f/7063987e7713dfbcd05bc53e4778c2284e3ea905112fc97d83d03afa60d9/khmer-0.8.tar.gz (from https://pypi.org/simple/khmer/), version: 0.8 2023-09-08T14:29:36,416 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/4e/6c/33badfa2550b73b7f037afa2e37aa09b7506b5dbd58175b0c24f40ed8179/khmer-1.0-cp27-none-macosx_10_9_intel.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,416 Found link https://files.pythonhosted.org/packages/67/d0/334f8bba7befb5d671bf5663d1073c73cba841f13088d6426b93dbb884ce/khmer-1.0.tar.gz (from https://pypi.org/simple/khmer/), version: 1.0 2023-09-08T14:29:36,417 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/fd/a6/5b64bad521c070581ecb1f22ecfcb33d2b297ec353094438d807028e4be0/khmer-1.0.1-cp27-none-macosx_10_9_x86_64.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,418 Found link https://files.pythonhosted.org/packages/4e/73/cebb5f4952d79693ddd5c8a9efac21883f1b4cdff1d046adb2df1f2070bd/khmer-1.0.1.tar.gz (from https://pypi.org/simple/khmer/), version: 1.0.1 2023-09-08T14:29:36,419 Found link https://files.pythonhosted.org/packages/df/66/250be153108b73fa745d22b0e141d6d922cd011b6cda2233d46d34bcc596/khmer-1.1.tar.gz (from https://pypi.org/simple/khmer/), version: 1.1 2023-09-08T14:29:36,419 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/6d/0b/97e3dd8339736c4f4ebf3906274bcf972b2d308bb76db1702c187bfbd9fd/khmer-1.2-cp27-none-macosx_10_10_intel.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,420 Found link https://files.pythonhosted.org/packages/b8/b5/8143587dd5eba9204dea9eab50b990656b70e03538a44af56eec11a28f02/khmer-1.2.tar.gz (from https://pypi.org/simple/khmer/), version: 1.2 2023-09-08T14:29:36,420 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/41/7a/d94ad453d04782d82aebe7825ef4f1a38fc9e3374b0b3cfe9b1c5400482e/khmer-1.3-cp27-none-macosx_10_10_intel.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,421 Found link https://files.pythonhosted.org/packages/6c/cf/37bd5901fe1322b59cd2cece9c53661944e18dddba3e8ebf2aa2d7834113/khmer-1.3.tar.gz (from https://pypi.org/simple/khmer/), version: 1.3 2023-09-08T14:29:36,421 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/89/b4/310a7e99bac77a488cc482f4184480aa803f65bad8ffacb961c94f819335/khmer-1.4-cp27-none-macosx_10_10_intel.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,422 Found link https://files.pythonhosted.org/packages/5a/91/eb0c9a5fdab42699c56b8c60d0d02e806f4d4d42f809061eb9a1a9a59dfa/khmer-1.4.tar.gz (from https://pypi.org/simple/khmer/), version: 1.4 2023-09-08T14:29:36,422 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/5c/44/1d4273abe1bf162cd1a8c8d5424cec23e65971f90951659a0b590beaf364/khmer-1.4.1-cp27-none-macosx_10_10_intel.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,423 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/96/b7/76a047a594778ad4d2646754e4454ac9d484b7e64548ebed24362c5aba4f/khmer-1.4.1-cp27-none-macosx_10_6_x86_64.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,423 Found link https://files.pythonhosted.org/packages/5e/16/15243a0612c798595e8dd8bdf0477a7ce065929b9de5dbfebdf461006f05/khmer-1.4.1.tar.gz (from https://pypi.org/simple/khmer/), version: 1.4.1 2023-09-08T14:29:36,424 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/5d/f6/791f79f68be58cb20c6426726063d742b3dd778b222873cb9f01ab65bc09/khmer-2.0-cp27-none-macosx_10_6_intel.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,424 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/22/37/6c6fb54d9b8feb8a64e52e6e16cd409bc47d8240294caf8449fac6523f64/khmer-2.0-cp33-cp33m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,425 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/69/21/de9ff69a24a90e6f4e788b57a6d911b046cbc768436060c18a0c18c2e187/khmer-2.0-cp34-cp34m-macosx_10_6_intel.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,425 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/36/cb/4a1638d5ca5a9b0d53c1b5484cefdcda9f3079bfb0b92e2ae2fac6d83bfd/khmer-2.0-cp35-cp35m-macosx_10_6_intel.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,426 Found link https://files.pythonhosted.org/packages/52/3b/2c52a13937197391775f274ed75b4a33b2d7767a904faaf4032e14e10a55/khmer-2.0.tar.gz (from https://pypi.org/simple/khmer/), version: 2.0 2023-09-08T14:29:36,427 Found link https://files.pythonhosted.org/packages/57/17/a1f05b13895e02cadeac06d61f7ea63e8c32eda38312d57e9ba218d0ca9b/khmer-2.1rc3.tar.gz (from https://pypi.org/simple/khmer/), version: 2.1rc3 2023-09-08T14:29:36,427 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/c9/bb/8cccf9bf31082b3d78aa628ca62e8603f81de83b7a5056f0ce026cfb50fd/khmer-2.1-cp36-cp36m-macosx_10_12_x86_64.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,428 Found link https://files.pythonhosted.org/packages/3e/e5/b3190cb9def69d665b42cd91ea27712f1d7de643f4b9c66ef2e5f1ab29c6/khmer-2.1.tar.gz (from https://pypi.org/simple/khmer/), version: 2.1 2023-09-08T14:29:36,429 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/d3/55/d3f5da570677903679e0c40aa4b93323853ebe15e75944b4a0d7d25d11c8/khmer-2.1.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,429 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/40/5a/328d310361d98bb2f29361128eaa2493f44b51997d6837c72f1766c4ec7b/khmer-2.1.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,429 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/34/a5/f3815d5ec3ee20f884f140ae4a2f253ae6d59885684fa8adc5525a9ed4f4/khmer-2.1.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,430 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/5f/7a/dd356f3b267d2adf079deebdd94590e42edbc376a2058759ff78ee6a75c5/khmer-2.1.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,430 Skipping link: No binaries permitted for khmer: https://files.pythonhosted.org/packages/3f/1e/931281ac388cbb15d40319d0dcd54cfc3f1d972da5de2fa3063facedc966/khmer-2.1.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/khmer/) 2023-09-08T14:29:36,431 Found link https://files.pythonhosted.org/packages/78/c9/caee0a310f249c86fd351706d2513e197e036231f4db6f3bda7a363ea1c4/khmer-2.1.1.tar.gz (from https://pypi.org/simple/khmer/), version: 2.1.1 2023-09-08T14:29:36,432 Fetching project page and analyzing links: https://www.piwheels.org/simple/khmer/ 2023-09-08T14:29:36,432 Getting page https://www.piwheels.org/simple/khmer/ 2023-09-08T14:29:36,433 Found index url https://www.piwheels.org/simple/ 2023-09-08T14:29:36,981 Fetched page https://www.piwheels.org/simple/khmer/ as text/html 2023-09-08T14:29:36,983 Skipping link: not a file: https://www.piwheels.org/simple/khmer/ 2023-09-08T14:29:36,985 Skipping link: not a file: https://pypi.org/simple/khmer/ 2023-09-08T14:29:37,029 Given no hashes to check 1 links for project 'khmer': discarding no candidates 2023-09-08T14:29:37,050 Collecting khmer==0.7.1 2023-09-08T14:29:37,053 Created temporary directory: /tmp/pip-unpack-i1sl7w3e 2023-09-08T14:29:37,899 Downloading khmer-0.7.1.tar.gz (18.9 MB) 2023-09-08T14:29:48,495 Added khmer==0.7.1 from https://files.pythonhosted.org/packages/92/11/b17b809e155f35cfc17710ea67b7515b6025e141de6506a4af4e32e32b70/khmer-0.7.1.tar.gz to build tracker '/tmp/pip-build-tracker-yu7vnem7' 2023-09-08T14:29:48,496 Running setup.py (path:/tmp/pip-wheel-sic10ow8/khmer_2befc33e0644430cbeee3baa46604828/setup.py) egg_info for package khmer 2023-09-08T14:29:48,497 Created temporary directory: /tmp/pip-pip-egg-info-ne5im3b9 2023-09-08T14:29:48,498 Preparing metadata (setup.py): started 2023-09-08T14:29:48,499 Running command python setup.py egg_info 2023-09-08T14:29:49,275 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-08T14:29:49,275 !! 2023-09-08T14:29:49,276 ******************************************************************************** 2023-09-08T14:29:49,277 Requirements should be satisfied by a PEP 517 installer. 2023-09-08T14:29:49,277 If you are using pip, you can try `pip install --use-pep517`. 2023-09-08T14:29:49,277 ******************************************************************************** 2023-09-08T14:29:49,279 !! 2023-09-08T14:29:49,279 dist.fetch_build_eggs(dist.setup_requires) 2023-09-08T14:30:29,901 running egg_info 2023-09-08T14:30:29,902 creating /tmp/pip-pip-egg-info-ne5im3b9/khmer.egg-info 2023-09-08T14:30:29,943 writing /tmp/pip-pip-egg-info-ne5im3b9/khmer.egg-info/PKG-INFO 2023-09-08T14:30:29,946 writing dependency_links to /tmp/pip-pip-egg-info-ne5im3b9/khmer.egg-info/dependency_links.txt 2023-09-08T14:30:29,948 writing requirements to /tmp/pip-pip-egg-info-ne5im3b9/khmer.egg-info/requires.txt 2023-09-08T14:30:29,949 writing top-level names to /tmp/pip-pip-egg-info-ne5im3b9/khmer.egg-info/top_level.txt 2023-09-08T14:30:29,950 writing manifest file '/tmp/pip-pip-egg-info-ne5im3b9/khmer.egg-info/SOURCES.txt' 2023-09-08T14:30:30,088 reading manifest file '/tmp/pip-pip-egg-info-ne5im3b9/khmer.egg-info/SOURCES.txt' 2023-09-08T14:30:30,089 reading manifest template 'MANIFEST.in' 2023-09-08T14:30:31,816 no previously-included directories found matching 'doc/doxygen' 2023-09-08T14:30:31,819 warning: no previously-included files found matching 'data/1m-filtered.fa' 2023-09-08T14:30:31,838 writing manifest file '/tmp/pip-pip-egg-info-ne5im3b9/khmer.egg-info/SOURCES.txt' 2023-09-08T14:30:31,958 Preparing metadata (setup.py): finished with status 'done' 2023-09-08T14:30:31,962 Source in /tmp/pip-wheel-sic10ow8/khmer_2befc33e0644430cbeee3baa46604828 has version 0.7.1, which satisfies requirement khmer==0.7.1 from https://files.pythonhosted.org/packages/92/11/b17b809e155f35cfc17710ea67b7515b6025e141de6506a4af4e32e32b70/khmer-0.7.1.tar.gz 2023-09-08T14:30:31,963 Removed khmer==0.7.1 from https://files.pythonhosted.org/packages/92/11/b17b809e155f35cfc17710ea67b7515b6025e141de6506a4af4e32e32b70/khmer-0.7.1.tar.gz from build tracker '/tmp/pip-build-tracker-yu7vnem7' 2023-09-08T14:30:31,967 Created temporary directory: /tmp/pip-unpack-fj_s64re 2023-09-08T14:30:31,968 Created temporary directory: /tmp/pip-unpack-pe7glttl 2023-09-08T14:30:31,974 Building wheels for collected packages: khmer 2023-09-08T14:30:31,978 Created temporary directory: /tmp/pip-wheel-68r9syty 2023-09-08T14:30:31,979 Building wheel for khmer (setup.py): started 2023-09-08T14:30:31,980 Destination directory: /tmp/pip-wheel-68r9syty 2023-09-08T14:30:31,980 Running command python setup.py bdist_wheel 2023-09-08T14:30:32,734 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-08T14:30:32,735 !! 2023-09-08T14:30:32,736 ******************************************************************************** 2023-09-08T14:30:32,736 Requirements should be satisfied by a PEP 517 installer. 2023-09-08T14:30:32,737 If you are using pip, you can try `pip install --use-pep517`. 2023-09-08T14:30:32,737 ******************************************************************************** 2023-09-08T14:30:32,738 !! 2023-09-08T14:30:32,739 dist.fetch_build_eggs(dist.setup_requires) 2023-09-08T14:30:35,065 running bdist_wheel 2023-09-08T14:30:35,146 running build 2023-09-08T14:30:35,147 got version from file /tmp/pip-wheel-sic10ow8/khmer_2befc33e0644430cbeee3baa46604828/khmer/_version.py {'version': '0.7.1', 'full': '1307fa03d7f0f2657ff22a6acad474361a1120f7'} 2023-09-08T14:30:35,147 running build_py 2023-09-08T14:30:35,191 creating build 2023-09-08T14:30:35,192 creating build/lib.linux-armv7l-cpython-311 2023-09-08T14:30:35,192 creating build/lib.linux-armv7l-cpython-311/khmer 2023-09-08T14:30:35,194 copying khmer/threading_args.py -> build/lib.linux-armv7l-cpython-311/khmer 2023-09-08T14:30:35,195 copying khmer/hashbits_args.py -> build/lib.linux-armv7l-cpython-311/khmer 2023-09-08T14:30:35,197 copying khmer/_version.py -> build/lib.linux-armv7l-cpython-311/khmer 2023-09-08T14:30:35,198 copying khmer/utils.py -> build/lib.linux-armv7l-cpython-311/khmer 2023-09-08T14:30:35,200 copying khmer/__init__.py -> build/lib.linux-armv7l-cpython-311/khmer 2023-09-08T14:30:35,202 copying khmer/counting_args.py -> build/lib.linux-armv7l-cpython-311/khmer 2023-09-08T14:30:35,204 copying khmer/thread_utils.py -> build/lib.linux-armv7l-cpython-311/khmer 2023-09-08T14:30:35,206 copying khmer/load_pe.py -> build/lib.linux-armv7l-cpython-311/khmer 2023-09-08T14:30:35,207 running egg_info 2023-09-08T14:30:35,249 creating khmer.egg-info 2023-09-08T14:30:35,290 writing khmer.egg-info/PKG-INFO 2023-09-08T14:30:35,292 writing dependency_links to khmer.egg-info/dependency_links.txt 2023-09-08T14:30:35,294 writing requirements to khmer.egg-info/requires.txt 2023-09-08T14:30:35,295 writing top-level names to khmer.egg-info/top_level.txt 2023-09-08T14:30:35,296 writing manifest file 'khmer.egg-info/SOURCES.txt' 2023-09-08T14:30:35,340 reading manifest file 'khmer.egg-info/SOURCES.txt' 2023-09-08T14:30:35,341 reading manifest template 'MANIFEST.in' 2023-09-08T14:30:36,786 no previously-included directories found matching 'doc/doxygen' 2023-09-08T14:30:36,788 warning: no previously-included files found matching 'data/1m-filtered.fa' 2023-09-08T14:30:36,824 writing manifest file 'khmer.egg-info/SOURCES.txt' 2023-09-08T14:30:36,836 copying khmer/_khmermodule.cc -> build/lib.linux-armv7l-cpython-311/khmer 2023-09-08T14:30:36,840 running build_ext 2023-09-08T14:30:36,852 gcc -O3 -fPIC -DUSE_MMAP -c -o adler32.o adler32.c 2023-09-08T14:30:37,151 gcc -O3 -fPIC -DUSE_MMAP -c -o compress.o compress.c 2023-09-08T14:30:37,270 gcc -O3 -fPIC -DUSE_MMAP -c -o crc32.o crc32.c 2023-09-08T14:30:37,716 gcc -O3 -fPIC -DUSE_MMAP -c -o gzio.o gzio.c 2023-09-08T14:30:38,780 gcc -O3 -fPIC -DUSE_MMAP -c -o uncompr.o uncompr.c 2023-09-08T14:30:38,891 gcc -O3 -fPIC -DUSE_MMAP -c -o deflate.o deflate.c 2023-09-08T14:30:40,457 gcc -O3 -fPIC -DUSE_MMAP -c -o trees.o trees.c 2023-09-08T14:30:41,869 gcc -O3 -fPIC -DUSE_MMAP -c -o zutil.o zutil.c 2023-09-08T14:30:42,004 gcc -O3 -fPIC -DUSE_MMAP -c -o inflate.o inflate.c 2023-09-08T14:30:43,698 gcc -O3 -fPIC -DUSE_MMAP -c -o infback.o infback.c 2023-09-08T14:30:44,513 gcc -O3 -fPIC -DUSE_MMAP -c -o inftrees.o inftrees.c 2023-09-08T14:30:44,994 gcc -O3 -fPIC -DUSE_MMAP -c -o inffast.o inffast.c 2023-09-08T14:30:45,431 ar rc libz.a adler32.o compress.o crc32.o gzio.o uncompr.o deflate.o trees.o zutil.o inflate.o infback.o inftrees.o inffast.o 2023-09-08T14:30:46,372 gcc -fpic -fPIC -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c blocksort.c 2023-09-08T14:30:47,261 In function ‘mainSimpleSort’, 2023-09-08T14:30:47,262 inlined from ‘mainQSort3’ at blocksort.c:651:10, 2023-09-08T14:30:47,262 inlined from ‘mainSort’ at blocksort.c:897:19: 2023-09-08T14:30:47,263 blocksort.c:347:6: warning: inlining failed in call to ‘mainGtU’: --param max-inline-insns-single limit reached [-Winline] 2023-09-08T14:30:47,263 347 | Bool mainGtU ( UInt32 i1, 2023-09-08T14:30:47,264 | ^~~~~~~ 2023-09-08T14:30:47,264 blocksort.c:514:18: note: called from here 2023-09-08T14:30:47,265 514 | while ( mainGtU ( 2023-09-08T14:30:47,266 | ^~~~~~~~~ 2023-09-08T14:30:47,266 515 | ptr[j-h]+d, v+d, block, quadrant, nblock, budget 2023-09-08T14:30:47,267 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:30:47,267 516 | ) ) { 2023-09-08T14:30:47,268 | ~ 2023-09-08T14:30:47,269 blocksort.c:347:6: warning: inlining failed in call to ‘mainGtU’: --param max-inline-insns-single limit reached [-Winline] 2023-09-08T14:30:47,269 347 | Bool mainGtU ( UInt32 i1, 2023-09-08T14:30:47,270 | ^~~~~~~ 2023-09-08T14:30:47,271 blocksort.c:528:18: note: called from here 2023-09-08T14:30:47,271 528 | while ( mainGtU ( 2023-09-08T14:30:47,272 | ^~~~~~~~~ 2023-09-08T14:30:47,273 529 | ptr[j-h]+d, v+d, block, quadrant, nblock, budget 2023-09-08T14:30:47,273 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:30:47,274 530 | ) ) { 2023-09-08T14:30:47,274 | ~ 2023-09-08T14:30:47,275 blocksort.c:347:6: warning: inlining failed in call to ‘mainGtU’: --param max-inline-insns-single limit reached [-Winline] 2023-09-08T14:30:47,276 347 | Bool mainGtU ( UInt32 i1, 2023-09-08T14:30:47,276 | ^~~~~~~ 2023-09-08T14:30:47,277 blocksort.c:542:18: note: called from here 2023-09-08T14:30:47,277 542 | while ( mainGtU ( 2023-09-08T14:30:47,278 | ^~~~~~~~~ 2023-09-08T14:30:47,278 543 | ptr[j-h]+d, v+d, block, quadrant, nblock, budget 2023-09-08T14:30:47,279 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:30:47,279 544 | ) ) { 2023-09-08T14:30:47,280 | ~ 2023-09-08T14:30:48,077 gcc -fpic -fPIC -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c huffman.c 2023-09-08T14:30:48,536 gcc -fpic -fPIC -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c crctable.c 2023-09-08T14:30:48,650 gcc -fpic -fPIC -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c randtable.c 2023-09-08T14:30:48,762 gcc -fpic -fPIC -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c compress.c 2023-09-08T14:30:53,245 gcc -fpic -fPIC -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c decompress.c 2023-09-08T14:30:55,794 gcc -fpic -fPIC -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c bzlib.c 2023-09-08T14:30:57,736 #gcc -shared -Wl,-soname -Wl,libbz2.so.1.0 -o libbz2.so.1.0.6 blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o 2023-09-08T14:30:57,738 #gcc -fpic -fPIC -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -o bzip2-shared bzip2.c libbz2.so.1.0.6 2023-09-08T14:30:57,741 #rm -f libbz2.so.1.0 2023-09-08T14:30:57,743 #ln -s libbz2.so.1.0.6 libbz2.so.1.0 2023-09-08T14:30:57,752 building 'khmer._khmermodule' extension 2023-09-08T14:30:57,753 creating build/temp.linux-armv7l-cpython-311 2023-09-08T14:30:57,753 creating build/temp.linux-armv7l-cpython-311/khmer 2023-09-08T14:30:57,754 creating build/temp.linux-armv7l-cpython-311/lib 2023-09-08T14:30:57,755 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION=0.7.1 -UNO_UNIQUE_RC -Ilib -I/usr/include/python3.11 -c khmer/_khmermodule.cc -o build/temp.linux-armv7l-cpython-311/khmer/_khmermodule.o -O3 2023-09-08T14:31:00,564 khmer/_khmermodule.cc: In function ‘void khmer::python::_common_init_Type(PyTypeObject&, const char*, const char*)’: 2023-09-08T14:31:00,565 khmer/_khmermodule.cc:83:10: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘ob_size’ 2023-09-08T14:31:00,565 83 | tobj.ob_size = 0; 2023-09-08T14:31:00,566 | ^~~~~~~ 2023-09-08T14:31:00,567 khmer/_khmermodule.cc:84:10: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘ob_type’ 2023-09-08T14:31:00,567 84 | tobj.ob_type = &PyType_Type; 2023-09-08T14:31:00,568 | ^~~~~~~ 2023-09-08T14:31:00,572 khmer/_khmermodule.cc: At global scope: 2023-09-08T14:31:00,573 khmer/_khmermodule.cc:200:5: error: invalid conversion from ‘const char*’ to ‘Py_ssize_t’ {aka ‘int’} [-fpermissive] 2023-09-08T14:31:00,573 200 | "Config", sizeof(khmer_ConfigObject), 2023-09-08T14:31:00,574 | ^~~~~~~~ 2023-09-08T14:31:00,574 | | 2023-09-08T14:31:00,575 | const char* 2023-09-08T14:31:00,576 khmer/_khmermodule.cc:202:5: error: invalid conversion from ‘void (*)(PyObject*)’ {aka ‘void (*)(_object*)’} to ‘Py_ssize_t’ {aka ‘int’} [-fpermissive] 2023-09-08T14:31:00,577 202 | khmer_config_dealloc, /*tp_dealloc*/ 2023-09-08T14:31:00,577 | ^~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:00,578 | | 2023-09-08T14:31:00,579 | void (*)(PyObject*) {aka void (*)(_object*)} 2023-09-08T14:31:00,579 khmer/_khmermodule.cc:204:5: error: invalid conversion from ‘PyObject* (*)(PyObject*, char*)’ {aka ‘_object* (*)(_object*, char*)’} to ‘setattrfunc’ {aka ‘int (*)(_object*, char*, _object*)’} [-fpermissive] 2023-09-08T14:31:00,580 204 | khmer_config_getattr, /*tp_getattr*/ 2023-09-08T14:31:00,581 | ^~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:00,581 | | 2023-09-08T14:31:00,582 | PyObject* (*)(PyObject*, char*) {aka _object* (*)(_object*, char*)} 2023-09-08T14:31:00,582 In file included from /usr/include/python3.11/Python.h:44, 2023-09-08T14:31:00,583 from khmer/_khmermodule.cc:12: 2023-09-08T14:31:00,583 /usr/include/python3.11/object.h:423:54: error: invalid conversion from ‘int’ to ‘const char*’ [-fpermissive] 2023-09-08T14:31:00,584 422 | #define Py_TPFLAGS_DEFAULT ( \ 2023-09-08T14:31:00,584 | ~~~ 2023-09-08T14:31:00,585 423 | Py_TPFLAGS_HAVE_STACKLESS_EXTENSION | \ 2023-09-08T14:31:00,586 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2023-09-08T14:31:00,586 | | 2023-09-08T14:31:00,586 | int 2023-09-08T14:31:00,587 424 | 0) 2023-09-08T14:31:00,587 | ~~ 2023-09-08T14:31:00,588 khmer/_khmermodule.cc:217:5: note: in expansion of macro ‘Py_TPFLAGS_DEFAULT’ 2023-09-08T14:31:00,588 217 | Py_TPFLAGS_DEFAULT, /*tp_flags*/ 2023-09-08T14:31:00,588 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:00,589 khmer/_khmermodule.cc:218:5: error: cannot convert ‘const char*’ to ‘traverseproc’ {aka ‘int (*)(_object*, int (*)(_object*, void*), void*)’} in initialization 2023-09-08T14:31:00,589 218 | "config object", /* tp_doc */ 2023-09-08T14:31:00,590 | ^~~~~~~~~~~~~~~ 2023-09-08T14:31:00,590 | | 2023-09-08T14:31:00,590 | const char* 2023-09-08T14:31:00,602 khmer/_khmermodule.cc: In function ‘PyObject* config_get_number_of_threads(PyObject*, PyObject*)’: 2023-09-08T14:31:00,603 khmer/_khmermodule.cc:304:10: error: ‘PyInt_FromSize_t’ was not declared in this scope; did you mean ‘PyLong_FromSize_t’? 2023-09-08T14:31:00,603 304 | return PyInt_FromSize_t( (size_t)config->get_number_of_threads( ) ); 2023-09-08T14:31:00,604 | ^~~~~~~~~~~~~~~~ 2023-09-08T14:31:00,605 | PyLong_FromSize_t 2023-09-08T14:31:00,627 khmer/_khmermodule.cc: In function ‘PyObject* config_get_input_buffer_trace_level(PyObject*, PyObject*)’: 2023-09-08T14:31:00,628 khmer/_khmermodule.cc:360:10: error: ‘PyInt_FromSize_t’ was not declared in this scope; did you mean ‘PyLong_FromSize_t’? 2023-09-08T14:31:00,629 360 | return PyInt_FromSize_t( (size_t)config->get_input_buffer_trace_level( ) ); 2023-09-08T14:31:00,629 | ^~~~~~~~~~~~~~~~ 2023-09-08T14:31:00,630 | PyLong_FromSize_t 2023-09-08T14:31:00,652 khmer/_khmermodule.cc: In function ‘PyObject* config_get_reads_parser_trace_level(PyObject*, PyObject*)’: 2023-09-08T14:31:00,653 khmer/_khmermodule.cc:387:10: error: ‘PyInt_FromSize_t’ was not declared in this scope; did you mean ‘PyLong_FromSize_t’? 2023-09-08T14:31:00,653 387 | return PyInt_FromSize_t( (size_t)config->get_reads_parser_trace_level( ) ); 2023-09-08T14:31:00,654 | ^~~~~~~~~~~~~~~~ 2023-09-08T14:31:00,655 | PyLong_FromSize_t 2023-09-08T14:31:00,677 khmer/_khmermodule.cc: In function ‘PyObject* khmer_config_getattr(PyObject*, char*)’: 2023-09-08T14:31:00,678 khmer/_khmermodule.cc:434:10: error: ‘Py_FindMethod’ was not declared in this scope; did you mean ‘PyCMethod’? 2023-09-08T14:31:00,678 434 | return Py_FindMethod(khmer_config_methods, obj, name); 2023-09-08T14:31:00,679 | ^~~~~~~~~~~~~ 2023-09-08T14:31:00,680 | PyCMethod 2023-09-08T14:31:00,705 khmer/_khmermodule.cc: In function ‘PyObject* khmer::python::Read_get_name(PyObject*, void*)’: 2023-09-08T14:31:00,706 khmer/_khmermodule.cc:472:5: error: ‘PyString_FromString’ was not declared in this scope; did you mean ‘PyLong_FromString’? 2023-09-08T14:31:00,706 472 | PyString_FromString( \ 2023-09-08T14:31:00,707 | ^~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:00,707 khmer/_khmermodule.cc:480:10: note: in expansion of macro ‘KHMER_READ_STRING_GETTER’ 2023-09-08T14:31:00,708 480 | { return KHMER_READ_STRING_GETTER( self, name ); } 2023-09-08T14:31:00,708 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:00,732 khmer/_khmermodule.cc: In function ‘PyObject* khmer::python::Read_get_sequence(PyObject*, void*)’: 2023-09-08T14:31:00,733 khmer/_khmermodule.cc:472:5: error: ‘PyString_FromString’ was not declared in this scope; did you mean ‘PyLong_FromString’? 2023-09-08T14:31:00,733 472 | PyString_FromString( \ 2023-09-08T14:31:00,734 | ^~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:00,734 khmer/_khmermodule.cc:486:10: note: in expansion of macro ‘KHMER_READ_STRING_GETTER’ 2023-09-08T14:31:00,735 486 | { return KHMER_READ_STRING_GETTER( self, sequence ); } 2023-09-08T14:31:00,735 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:00,759 khmer/_khmermodule.cc: In function ‘PyObject* khmer::python::Read_get_accuracy(PyObject*, void*)’: 2023-09-08T14:31:00,760 khmer/_khmermodule.cc:472:5: error: ‘PyString_FromString’ was not declared in this scope; did you mean ‘PyLong_FromString’? 2023-09-08T14:31:00,760 472 | PyString_FromString( \ 2023-09-08T14:31:00,761 | ^~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:00,762 khmer/_khmermodule.cc:492:10: note: in expansion of macro ‘KHMER_READ_STRING_GETTER’ 2023-09-08T14:31:00,762 492 | { return KHMER_READ_STRING_GETTER( self, accuracy ); } 2023-09-08T14:31:00,763 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:00,786 khmer/_khmermodule.cc: In function ‘PyObject* khmer::python::Read_get_annotations(PyObject*, void*)’: 2023-09-08T14:31:00,787 khmer/_khmermodule.cc:472:5: error: ‘PyString_FromString’ was not declared in this scope; did you mean ‘PyLong_FromString’? 2023-09-08T14:31:00,787 472 | PyString_FromString( \ 2023-09-08T14:31:00,788 | ^~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:00,789 khmer/_khmermodule.cc:498:10: note: in expansion of macro ‘KHMER_READ_STRING_GETTER’ 2023-09-08T14:31:00,789 498 | { return KHMER_READ_STRING_GETTER( self, annotations ); } 2023-09-08T14:31:00,790 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:00,834 khmer/_khmermodule.cc: In function ‘void khmer::python::_init_ReadParser_Type()’: 2023-09-08T14:31:00,835 khmer/_khmermodule.cc:824:9: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:00,835 824 | PyInt_FromLong( IParser:: PAIR_MODE_ALLOW_UNPAIRED ) 2023-09-08T14:31:00,836 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:00,837 | PyLong_FromLong 2023-09-08T14:31:00,864 khmer/_khmermodule.cc: In function ‘PyObject* ktable_reverse_hash(PyObject*, PyObject*)’: 2023-09-08T14:31:00,865 khmer/_khmermodule.cc:965:10: error: ‘PyString_FromString’ was not declared in this scope; did you mean ‘PyLong_FromString’? 2023-09-08T14:31:00,865 965 | return PyString_FromString(khmer::_revhash(val, ktable->ksize()).c_str()); 2023-09-08T14:31:00,866 | ^~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:00,867 | PyLong_FromString 2023-09-08T14:31:00,887 khmer/_khmermodule.cc: In function ‘PyObject* ktable_count(PyObject*, PyObject*)’: 2023-09-08T14:31:00,888 khmer/_khmermodule.cc:991:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:00,888 991 | return PyInt_FromLong(1); 2023-09-08T14:31:00,889 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:00,890 | PyLong_FromLong 2023-09-08T14:31:00,912 khmer/_khmermodule.cc: In function ‘PyObject* ktable_consume(PyObject*, PyObject*)’: 2023-09-08T14:31:00,912 khmer/_khmermodule.cc:1019:10: error: ‘PyInt_FromSize_t’ was not declared in this scope; did you mean ‘PyLong_FromSize_t’? 2023-09-08T14:31:00,913 1019 | return PyInt_FromSize_t(n_consumed); 2023-09-08T14:31:00,914 | ^~~~~~~~~~~~~~~~ 2023-09-08T14:31:00,914 | PyLong_FromSize_t 2023-09-08T14:31:00,930 khmer/_khmermodule.cc: In function ‘PyObject* ktable_get(PyObject*, PyObject*)’: 2023-09-08T14:31:00,931 khmer/_khmermodule.cc:1038:14: error: ‘PyInt_Check’ was not declared in this scope; did you mean ‘PySet_Check’? 2023-09-08T14:31:00,932 1038 | } else if (PyInt_Check(arg)) { 2023-09-08T14:31:00,932 | ^~~~~~~~~~~ 2023-09-08T14:31:00,933 | PySet_Check 2023-09-08T14:31:00,950 khmer/_khmermodule.cc:1039:16: error: ‘PyInt_AsLong’ was not declared in this scope; did you mean ‘PyLong_AsLong’? 2023-09-08T14:31:00,951 1039 | long pos = PyInt_AsLong(arg); 2023-09-08T14:31:00,952 | ^~~~~~~~~~~~ 2023-09-08T14:31:00,952 | PyLong_AsLong 2023-09-08T14:31:00,973 khmer/_khmermodule.cc:1041:14: error: ‘PyString_Check’ was not declared in this scope; did you mean ‘PyMapping_Check’? 2023-09-08T14:31:00,974 1041 | } else if (PyString_Check(arg)) { 2023-09-08T14:31:00,975 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:00,975 | PyMapping_Check 2023-09-08T14:31:01,001 khmer/_khmermodule.cc:1042:21: error: ‘PyString_AsString’ was not declared in this scope 2023-09-08T14:31:01,001 1042 | std::string s = PyString_AsString(arg); 2023-09-08T14:31:01,002 | ^~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,029 khmer/_khmermodule.cc: In function ‘int ktable__contains__(PyObject*, PyObject*)’: 2023-09-08T14:31:01,030 khmer/_khmermodule.cc:1064:21: error: ‘PyString_AsString’ was not declared in this scope 2023-09-08T14:31:01,030 1064 | char * kmer_str = PyString_AsString( val ); 2023-09-08T14:31:01,031 | ^~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,048 khmer/_khmermodule.cc: In function ‘PyObject* ktable_set(PyObject*, PyObject*)’: 2023-09-08T14:31:01,048 khmer/_khmermodule.cc:1082:7: error: ‘PyInt_Check’ was not declared in this scope; did you mean ‘PySet_Check’? 2023-09-08T14:31:01,049 1082 | if (PyInt_Check(arg)) { 2023-09-08T14:31:01,050 | ^~~~~~~~~~~ 2023-09-08T14:31:01,050 | PySet_Check 2023-09-08T14:31:01,068 khmer/_khmermodule.cc:1083:16: error: ‘PyInt_AsLong’ was not declared in this scope; did you mean ‘PyLong_AsLong’? 2023-09-08T14:31:01,068 1083 | long pos = PyInt_AsLong(arg); 2023-09-08T14:31:01,069 | ^~~~~~~~~~~~ 2023-09-08T14:31:01,070 | PyLong_AsLong 2023-09-08T14:31:01,091 khmer/_khmermodule.cc:1085:14: error: ‘PyString_Check’ was not declared in this scope; did you mean ‘PyMapping_Check’? 2023-09-08T14:31:01,092 1085 | } else if (PyString_Check(arg)) { 2023-09-08T14:31:01,092 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,093 | PyMapping_Check 2023-09-08T14:31:01,118 khmer/_khmermodule.cc:1086:21: error: ‘PyString_AsString’ was not declared in this scope 2023-09-08T14:31:01,119 1086 | std::string s = PyString_AsString(arg); 2023-09-08T14:31:01,119 | ^~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,142 khmer/_khmermodule.cc: In function ‘PyObject* ktable_ksize(PyObject*, PyObject*)’: 2023-09-08T14:31:01,142 khmer/_khmermodule.cc:1134:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:01,143 1134 | return PyInt_FromLong(ktable->ksize()); 2023-09-08T14:31:01,144 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,144 | PyLong_FromLong 2023-09-08T14:31:01,167 khmer/_khmermodule.cc: In function ‘PyObject* khmer_ktable_getattr(PyObject*, char*)’: 2023-09-08T14:31:01,168 khmer/_khmermodule.cc:1179:10: error: ‘Py_FindMethod’ was not declared in this scope; did you mean ‘PyCMethod’? 2023-09-08T14:31:01,168 1179 | return Py_FindMethod(khmer_ktable_methods, obj, name); 2023-09-08T14:31:01,169 | ^~~~~~~~~~~~~ 2023-09-08T14:31:01,169 | PyCMethod 2023-09-08T14:31:01,170 khmer/_khmermodule.cc: At global scope: 2023-09-08T14:31:01,171 khmer/_khmermodule.cc:1200:5: error: invalid conversion from ‘const char*’ to ‘Py_ssize_t’ {aka ‘int’} [-fpermissive] 2023-09-08T14:31:01,171 1200 | "KTable", sizeof(khmer_KTableObject), 2023-09-08T14:31:01,172 | ^~~~~~~~ 2023-09-08T14:31:01,172 | | 2023-09-08T14:31:01,173 | const char* 2023-09-08T14:31:01,173 khmer/_khmermodule.cc:1202:5: error: invalid conversion from ‘void (*)(PyObject*)’ {aka ‘void (*)(_object*)’} to ‘Py_ssize_t’ {aka ‘int’} [-fpermissive] 2023-09-08T14:31:01,174 1202 | khmer_ktable_dealloc, /*tp_dealloc*/ 2023-09-08T14:31:01,174 | ^~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,175 | | 2023-09-08T14:31:01,176 | void (*)(PyObject*) {aka void (*)(_object*)} 2023-09-08T14:31:01,176 khmer/_khmermodule.cc:1204:5: error: invalid conversion from ‘PyObject* (*)(PyObject*, char*)’ {aka ‘_object* (*)(_object*, char*)’} to ‘setattrfunc’ {aka ‘int (*)(_object*, char*, _object*)’} [-fpermissive] 2023-09-08T14:31:01,177 1204 | khmer_ktable_getattr, /*tp_getattr*/ 2023-09-08T14:31:01,177 | ^~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,178 | | 2023-09-08T14:31:01,178 | PyObject* (*)(PyObject*, char*) {aka _object* (*)(_object*, char*)} 2023-09-08T14:31:01,179 khmer/_khmermodule.cc:1209:5: error: cannot convert ‘PySequenceMethods*’ to ‘PyMappingMethods*’ in initialization 2023-09-08T14:31:01,180 1209 | &khmer_KTable_SequenceMethods, /*tp_as_sequence*/ 2023-09-08T14:31:01,180 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,181 | | 2023-09-08T14:31:01,182 | PySequenceMethods* 2023-09-08T14:31:01,182 khmer/_khmermodule.cc:1327:5: error: invalid conversion from ‘const char*’ to ‘Py_ssize_t’ {aka ‘int’} [-fpermissive] 2023-09-08T14:31:01,183 1327 | "KHashbits", sizeof(khmer_KHashbitsObject), 2023-09-08T14:31:01,184 | ^~~~~~~~~~~ 2023-09-08T14:31:01,184 | | 2023-09-08T14:31:01,185 | const char* 2023-09-08T14:31:01,186 khmer/_khmermodule.cc:1329:5: error: invalid conversion from ‘void (*)(PyObject*)’ {aka ‘void (*)(_object*)’} to ‘Py_ssize_t’ {aka ‘int’} [-fpermissive] 2023-09-08T14:31:01,186 1329 | khmer_hashbits_dealloc, /*tp_dealloc*/ 2023-09-08T14:31:01,187 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,187 | | 2023-09-08T14:31:01,188 | void (*)(PyObject*) {aka void (*)(_object*)} 2023-09-08T14:31:01,189 khmer/_khmermodule.cc:1331:5: error: invalid conversion from ‘PyObject* (*)(PyObject*, char*)’ {aka ‘_object* (*)(_object*, char*)’} to ‘setattrfunc’ {aka ‘int (*)(_object*, char*, _object*)’} [-fpermissive] 2023-09-08T14:31:01,189 1331 | khmer_hashbits_getattr, /*tp_getattr*/ 2023-09-08T14:31:01,190 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,191 | | 2023-09-08T14:31:01,191 | PyObject* (*)(PyObject*, char*) {aka _object* (*)(_object*, char*)} 2023-09-08T14:31:01,192 /usr/include/python3.11/object.h:423:54: error: invalid conversion from ‘int’ to ‘const char*’ [-fpermissive] 2023-09-08T14:31:01,192 422 | #define Py_TPFLAGS_DEFAULT ( \ 2023-09-08T14:31:01,193 | ~~~ 2023-09-08T14:31:01,194 423 | Py_TPFLAGS_HAVE_STACKLESS_EXTENSION | \ 2023-09-08T14:31:01,194 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2023-09-08T14:31:01,195 | | 2023-09-08T14:31:01,195 | int 2023-09-08T14:31:01,196 424 | 0) 2023-09-08T14:31:01,196 | ~~ 2023-09-08T14:31:01,196 khmer/_khmermodule.cc:1344:5: note: in expansion of macro ‘Py_TPFLAGS_DEFAULT’ 2023-09-08T14:31:01,197 1344 | Py_TPFLAGS_DEFAULT, /*tp_flags*/ 2023-09-08T14:31:01,197 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,198 khmer/_khmermodule.cc:1345:5: error: cannot convert ‘const char*’ to ‘traverseproc’ {aka ‘int (*)(_object*, int (*)(_object*, void*), void*)’} in initialization 2023-09-08T14:31:01,198 1345 | "hashbits object", /* tp_doc */ 2023-09-08T14:31:01,198 | ^~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,199 | | 2023-09-08T14:31:01,199 | const char* 2023-09-08T14:31:01,210 khmer/_khmermodule.cc: In function ‘PyObject* hash_count(PyObject*, PyObject*)’: 2023-09-08T14:31:01,210 khmer/_khmermodule.cc:1435:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:01,211 1435 | return PyInt_FromLong(1); 2023-09-08T14:31:01,211 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,212 | PyLong_FromLong 2023-09-08T14:31:01,232 khmer/_khmermodule.cc: In function ‘PyObject* hash_output_fasta_kmer_pos_freq(PyObject*, PyObject*)’: 2023-09-08T14:31:01,233 khmer/_khmermodule.cc:1452:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:01,233 1452 | return PyInt_FromLong(0); 2023-09-08T14:31:01,234 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,235 | PyLong_FromLong 2023-09-08T14:31:01,258 khmer/_khmermodule.cc: In function ‘PyObject* hash_consume(PyObject*, PyObject*)’: 2023-09-08T14:31:01,259 khmer/_khmermodule.cc:1538:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:01,259 1538 | return PyInt_FromLong(n_consumed); 2023-09-08T14:31:01,260 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,261 | PyLong_FromLong 2023-09-08T14:31:01,282 khmer/_khmermodule.cc: In function ‘PyObject* hash_consume_high_abund_kmers(PyObject*, PyObject*)’: 2023-09-08T14:31:01,283 khmer/_khmermodule.cc:1570:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:01,283 1570 | return PyInt_FromLong(n_consumed); 2023-09-08T14:31:01,284 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,285 | PyLong_FromLong 2023-09-08T14:31:01,306 khmer/_khmermodule.cc: In function ‘PyObject* hash_get_min_count(PyObject*, PyObject*)’: 2023-09-08T14:31:01,307 khmer/_khmermodule.cc:1593:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:01,307 1593 | return PyInt_FromLong(N); 2023-09-08T14:31:01,308 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,309 | PyLong_FromLong 2023-09-08T14:31:01,329 khmer/_khmermodule.cc: In function ‘PyObject* hash_get_max_count(PyObject*, PyObject*)’: 2023-09-08T14:31:01,330 khmer/_khmermodule.cc:1616:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:01,331 1616 | return PyInt_FromLong(N); 2023-09-08T14:31:01,331 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,332 | PyLong_FromLong 2023-09-08T14:31:01,353 khmer/_khmermodule.cc: In function ‘PyObject* hash_get(PyObject*, PyObject*)’: 2023-09-08T14:31:01,354 khmer/_khmermodule.cc:1719:7: error: ‘PyInt_Check’ was not declared in this scope; did you mean ‘PySet_Check’? 2023-09-08T14:31:01,354 1719 | if (PyInt_Check(arg)) { 2023-09-08T14:31:01,355 | ^~~~~~~~~~~ 2023-09-08T14:31:01,356 | PySet_Check 2023-09-08T14:31:01,373 khmer/_khmermodule.cc:1720:16: error: ‘PyInt_AsLong’ was not declared in this scope; did you mean ‘PyLong_AsLong’? 2023-09-08T14:31:01,374 1720 | long pos = PyInt_AsLong(arg); 2023-09-08T14:31:01,374 | ^~~~~~~~~~~~ 2023-09-08T14:31:01,375 | PyLong_AsLong 2023-09-08T14:31:01,396 khmer/_khmermodule.cc:1722:14: error: ‘PyString_Check’ was not declared in this scope; did you mean ‘PyMapping_Check’? 2023-09-08T14:31:01,397 1722 | } else if (PyString_Check(arg)) { 2023-09-08T14:31:01,397 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,398 | PyMapping_Check 2023-09-08T14:31:01,423 khmer/_khmermodule.cc:1723:21: error: ‘PyString_AsString’ was not declared in this scope 2023-09-08T14:31:01,424 1723 | std::string s = PyString_AsString(arg); 2023-09-08T14:31:01,425 | ^~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,445 khmer/_khmermodule.cc:1727:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:01,446 1727 | return PyInt_FromLong(count); 2023-09-08T14:31:01,447 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,447 | PyLong_FromLong 2023-09-08T14:31:01,468 khmer/_khmermodule.cc: In function ‘PyObject* hash_max_hamming1_count(PyObject*, PyObject*)’: 2023-09-08T14:31:01,469 khmer/_khmermodule.cc:1743:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:01,470 1743 | return PyInt_FromLong(count); 2023-09-08T14:31:01,470 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,471 | PyLong_FromLong 2023-09-08T14:31:01,497 khmer/_khmermodule.cc: In function ‘PyObject* count_trim_on_abundance(PyObject*, PyObject*)’: 2023-09-08T14:31:01,498 khmer/_khmermodule.cc:1767:25: error: ‘PyString_FromStringAndSize’ was not declared in this scope; did you mean ‘PyBytes_FromStringAndSize’? 2023-09-08T14:31:01,499 1767 | PyObject * trim_seq = PyString_FromStringAndSize(seq, trim_at); 2023-09-08T14:31:01,499 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,500 | PyBytes_FromStringAndSize 2023-09-08T14:31:01,527 khmer/_khmermodule.cc: In function ‘PyObject* count_trim_below_abundance(PyObject*, PyObject*)’: 2023-09-08T14:31:01,528 khmer/_khmermodule.cc:1797:25: error: ‘PyString_FromStringAndSize’ was not declared in this scope; did you mean ‘PyBytes_FromStringAndSize’? 2023-09-08T14:31:01,528 1797 | PyObject * trim_seq = PyString_FromStringAndSize(seq, trim_at); 2023-09-08T14:31:01,529 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,529 | PyBytes_FromStringAndSize 2023-09-08T14:31:01,560 khmer/_khmermodule.cc: In function ‘PyObject* hash_get_ksize(PyObject*, PyObject*)’: 2023-09-08T14:31:01,560 khmer/_khmermodule.cc:2013:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:01,561 2013 | return PyInt_FromLong(k); 2023-09-08T14:31:01,562 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,562 | PyLong_FromLong 2023-09-08T14:31:01,587 khmer/_khmermodule.cc: In function ‘PyObject* khmer_counting_getattr(PyObject*, char*)’: 2023-09-08T14:31:01,587 khmer/_khmermodule.cc:2078:10: error: ‘Py_FindMethod’ was not declared in this scope; did you mean ‘PyCMethod’? 2023-09-08T14:31:01,588 2078 | return Py_FindMethod(khmer_counting_methods, obj, name); 2023-09-08T14:31:01,589 | ^~~~~~~~~~~~~ 2023-09-08T14:31:01,589 | PyCMethod 2023-09-08T14:31:01,590 khmer/_khmermodule.cc: At global scope: 2023-09-08T14:31:01,590 khmer/_khmermodule.cc:2086:5: error: invalid conversion from ‘const char*’ to ‘Py_ssize_t’ {aka ‘int’} [-fpermissive] 2023-09-08T14:31:01,591 2086 | "KCountingHash", sizeof(khmer_KCountingHashObject), 2023-09-08T14:31:01,592 | ^~~~~~~~~~~~~~~ 2023-09-08T14:31:01,593 | | 2023-09-08T14:31:01,593 | const char* 2023-09-08T14:31:01,594 khmer/_khmermodule.cc:2088:5: error: invalid conversion from ‘void (*)(PyObject*)’ {aka ‘void (*)(_object*)’} to ‘Py_ssize_t’ {aka ‘int’} [-fpermissive] 2023-09-08T14:31:01,594 2088 | khmer_counting_dealloc, /*tp_dealloc*/ 2023-09-08T14:31:01,595 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,595 | | 2023-09-08T14:31:01,596 | void (*)(PyObject*) {aka void (*)(_object*)} 2023-09-08T14:31:01,596 khmer/_khmermodule.cc:2090:5: error: invalid conversion from ‘PyObject* (*)(PyObject*, char*)’ {aka ‘_object* (*)(_object*, char*)’} to ‘setattrfunc’ {aka ‘int (*)(_object*, char*, _object*)’} [-fpermissive] 2023-09-08T14:31:01,597 2090 | khmer_counting_getattr, /*tp_getattr*/ 2023-09-08T14:31:01,597 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,598 | | 2023-09-08T14:31:01,599 | PyObject* (*)(PyObject*, char*) {aka _object* (*)(_object*, char*)} 2023-09-08T14:31:01,599 /usr/include/python3.11/object.h:423:54: error: invalid conversion from ‘int’ to ‘const char*’ [-fpermissive] 2023-09-08T14:31:01,600 422 | #define Py_TPFLAGS_DEFAULT ( \ 2023-09-08T14:31:01,601 | ~~~ 2023-09-08T14:31:01,601 423 | Py_TPFLAGS_HAVE_STACKLESS_EXTENSION | \ 2023-09-08T14:31:01,602 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2023-09-08T14:31:01,603 | | 2023-09-08T14:31:01,603 | int 2023-09-08T14:31:01,604 424 | 0) 2023-09-08T14:31:01,604 | ~~ 2023-09-08T14:31:01,605 khmer/_khmermodule.cc:2103:5: note: in expansion of macro ‘Py_TPFLAGS_DEFAULT’ 2023-09-08T14:31:01,605 2103 | Py_TPFLAGS_DEFAULT, /*tp_flags*/ 2023-09-08T14:31:01,606 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,607 khmer/_khmermodule.cc:2104:5: error: cannot convert ‘const char*’ to ‘traverseproc’ {aka ‘int (*)(_object*, int (*)(_object*, void*), void*)’} in initialization 2023-09-08T14:31:01,607 2104 | "counting hash object", /* tp_doc */ 2023-09-08T14:31:01,608 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,608 | | 2023-09-08T14:31:01,609 | const char* 2023-09-08T14:31:01,626 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_n_tags(PyObject*, PyObject*)’: 2023-09-08T14:31:01,626 khmer/_khmermodule.cc:2259:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:01,627 2259 | return PyInt_FromLong(hashbits->n_tags()); 2023-09-08T14:31:01,628 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,628 | PyLong_FromLong 2023-09-08T14:31:01,649 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_count(PyObject*, PyObject*)’: 2023-09-08T14:31:01,650 khmer/_khmermodule.cc:2281:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:01,651 2281 | return PyInt_FromLong(1); 2023-09-08T14:31:01,651 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,652 | PyLong_FromLong 2023-09-08T14:31:01,673 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_consume(PyObject*, PyObject*)’: 2023-09-08T14:31:01,674 khmer/_khmermodule.cc:2304:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:01,674 2304 | return PyInt_FromLong(n_consumed); 2023-09-08T14:31:01,675 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,676 | PyLong_FromLong 2023-09-08T14:31:01,708 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_repartition_largest_partition(PyObject*, PyObject*)’: 2023-09-08T14:31:01,709 khmer/_khmermodule.cc:2410:43: error: ‘PyCObject_AsVoidPtr’ was not declared in this scope; did you mean ‘PyLong_AsVoidPtr’? 2023-09-08T14:31:01,710 2410 | subset_p = (khmer::SubsetPartition *) PyCObject_AsVoidPtr(subset_o); 2023-09-08T14:31:01,710 | ^~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,711 | PyLong_AsVoidPtr 2023-09-08T14:31:01,731 khmer/_khmermodule.cc:2419:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:01,731 2419 | return PyInt_FromLong(next_largest); 2023-09-08T14:31:01,732 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,732 | PyLong_FromLong 2023-09-08T14:31:01,750 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_get(PyObject*, PyObject*)’: 2023-09-08T14:31:01,751 khmer/_khmermodule.cc:2455:7: error: ‘PyInt_Check’ was not declared in this scope; did you mean ‘PySet_Check’? 2023-09-08T14:31:01,752 2455 | if (PyInt_Check(arg)) { 2023-09-08T14:31:01,752 | ^~~~~~~~~~~ 2023-09-08T14:31:01,753 | PySet_Check 2023-09-08T14:31:01,770 khmer/_khmermodule.cc:2456:16: error: ‘PyInt_AsLong’ was not declared in this scope; did you mean ‘PyLong_AsLong’? 2023-09-08T14:31:01,771 2456 | long pos = PyInt_AsLong(arg); 2023-09-08T14:31:01,771 | ^~~~~~~~~~~~ 2023-09-08T14:31:01,772 | PyLong_AsLong 2023-09-08T14:31:01,793 khmer/_khmermodule.cc:2458:14: error: ‘PyString_Check’ was not declared in this scope; did you mean ‘PyMapping_Check’? 2023-09-08T14:31:01,794 2458 | } else if (PyString_Check(arg)) { 2023-09-08T14:31:01,795 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,795 | PyMapping_Check 2023-09-08T14:31:01,820 khmer/_khmermodule.cc:2459:21: error: ‘PyString_AsString’ was not declared in this scope 2023-09-08T14:31:01,821 2459 | std::string s = PyString_AsString(arg); 2023-09-08T14:31:01,822 | ^~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,842 khmer/_khmermodule.cc:2463:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:01,843 2463 | return PyInt_FromLong(count); 2023-09-08T14:31:01,844 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,844 | PyLong_FromLong 2023-09-08T14:31:01,866 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_kmer_degree(PyObject*, PyObject*)’: 2023-09-08T14:31:01,867 khmer/_khmermodule.cc:2506:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:01,868 2506 | return PyInt_FromLong(hashbits->kmer_degree(kmer_s)); 2023-09-08T14:31:01,868 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:01,869 | PyLong_FromLong 2023-09-08T14:31:01,895 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_trim_on_degree(PyObject*, PyObject*)’: 2023-09-08T14:31:01,896 khmer/_khmermodule.cc:2528:25: error: ‘PyString_FromStringAndSize’ was not declared in this scope; did you mean ‘PyBytes_FromStringAndSize’? 2023-09-08T14:31:01,896 2528 | PyObject * trim_seq = PyString_FromStringAndSize(seq, trim_at); 2023-09-08T14:31:01,897 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,898 | PyBytes_FromStringAndSize 2023-09-08T14:31:01,924 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_trim_on_sodd(PyObject*, PyObject*)’: 2023-09-08T14:31:01,924 khmer/_khmermodule.cc:2557:25: error: ‘PyString_FromStringAndSize’ was not declared in this scope; did you mean ‘PyBytes_FromStringAndSize’? 2023-09-08T14:31:01,925 2557 | PyObject * trim_seq = PyString_FromStringAndSize(seq, trim_at); 2023-09-08T14:31:01,926 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,927 | PyBytes_FromStringAndSize 2023-09-08T14:31:01,953 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_trim_on_stoptags(PyObject*, PyObject*)’: 2023-09-08T14:31:01,953 khmer/_khmermodule.cc:2585:25: error: ‘PyString_FromStringAndSize’ was not declared in this scope; did you mean ‘PyBytes_FromStringAndSize’? 2023-09-08T14:31:01,954 2585 | PyObject * trim_seq = PyString_FromStringAndSize(seq, trim_at); 2023-09-08T14:31:01,955 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,955 | PyBytes_FromStringAndSize 2023-09-08T14:31:01,996 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_do_subset_partition(PyObject*, PyObject*)’: 2023-09-08T14:31:01,997 khmer/_khmermodule.cc:2666:10: error: ‘PyCObject_FromVoidPtr’ was not declared in this scope; did you mean ‘PyLong_FromVoidPtr’? 2023-09-08T14:31:01,998 2666 | return PyCObject_FromVoidPtr(subset_p, free_subset_partition_info); 2023-09-08T14:31:01,998 | ^~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:01,999 | PyLong_FromVoidPtr 2023-09-08T14:31:02,024 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_merge_subset(PyObject*, PyObject*)’: 2023-09-08T14:31:02,024 khmer/_khmermodule.cc:2694:8: error: ‘PyCObject_Check’ was not declared in this scope; did you mean ‘PyODict_Check’? 2023-09-08T14:31:02,025 2694 | if (!PyCObject_Check(subset_obj)) { 2023-09-08T14:31:02,026 | ^~~~~~~~~~~~~~~ 2023-09-08T14:31:02,026 | PyODict_Check 2023-09-08T14:31:02,054 khmer/_khmermodule.cc:2700:41: error: ‘PyCObject_AsVoidPtr’ was not declared in this scope; did you mean ‘PyLong_AsVoidPtr’? 2023-09-08T14:31:02,054 2700 | subset_p = (khmer::SubsetPartition *) PyCObject_AsVoidPtr(subset_obj); 2023-09-08T14:31:02,055 | ^~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:02,056 | PyLong_AsVoidPtr 2023-09-08T14:31:02,097 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_find_all_tags(PyObject*, PyObject*)’: 2023-09-08T14:31:02,097 khmer/_khmermodule.cc:2989:10: error: ‘PyCObject_FromVoidPtr’ was not declared in this scope; did you mean ‘PyLong_FromVoidPtr’? 2023-09-08T14:31:02,098 2989 | return PyCObject_FromVoidPtr(ppi, free_pre_partition_info); 2023-09-08T14:31:02,099 | ^~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:02,099 | PyLong_FromVoidPtr 2023-09-08T14:31:02,123 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_assign_partition_id(PyObject*, PyObject*)’: 2023-09-08T14:31:02,124 khmer/_khmermodule.cc:3002:8: error: ‘PyCObject_Check’ was not declared in this scope; did you mean ‘PyODict_Check’? 2023-09-08T14:31:02,124 3002 | if (!PyCObject_Check(ppi_obj)) { 2023-09-08T14:31:02,125 | ^~~~~~~~~~~~~~~ 2023-09-08T14:31:02,126 | PyODict_Check 2023-09-08T14:31:02,153 khmer/_khmermodule.cc:3008:33: error: ‘PyCObject_AsVoidPtr’ was not declared in this scope; did you mean ‘PyLong_AsVoidPtr’? 2023-09-08T14:31:02,154 3008 | ppi = (_pre_partition_info *) PyCObject_AsVoidPtr(ppi_obj); 2023-09-08T14:31:02,155 | ^~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:02,155 | PyLong_AsVoidPtr 2023-09-08T14:31:02,176 khmer/_khmermodule.cc:3014:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:02,177 3014 | return PyInt_FromLong(p); 2023-09-08T14:31:02,177 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:02,178 | PyLong_FromLong 2023-09-08T14:31:02,206 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_output_partitions(PyObject*, PyObject*)’: 2023-09-08T14:31:02,206 khmer/_khmermodule.cc:3130:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:02,207 3130 | return PyInt_FromLong(n_partitions); 2023-09-08T14:31:02,208 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:02,209 | PyLong_FromLong 2023-09-08T14:31:02,230 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_find_unpart(PyObject*, PyObject*)’: 2023-09-08T14:31:02,230 khmer/_khmermodule.cc:3161:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:02,231 3161 | return PyInt_FromLong(n_singletons); 2023-09-08T14:31:02,231 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:02,232 | PyLong_FromLong 2023-09-08T14:31:02,264 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_subset_count_partitions(PyObject*, PyObject*)’: 2023-09-08T14:31:02,264 khmer/_khmermodule.cc:3260:41: error: ‘PyCObject_AsVoidPtr’ was not declared in this scope; did you mean ‘PyLong_AsVoidPtr’? 2023-09-08T14:31:02,265 3260 | subset_p = (khmer::SubsetPartition *) PyCObject_AsVoidPtr(subset_obj); 2023-09-08T14:31:02,266 | ^~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:02,266 | PyLong_AsVoidPtr 2023-09-08T14:31:02,294 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_subset_partition_size_distribution(PyObject*, PyObject*)’: 2023-09-08T14:31:02,295 khmer/_khmermodule.cc:3278:41: error: ‘PyCObject_AsVoidPtr’ was not declared in this scope; did you mean ‘PyLong_AsVoidPtr’? 2023-09-08T14:31:02,295 3278 | subset_p = (khmer::SubsetPartition *) PyCObject_AsVoidPtr(subset_obj); 2023-09-08T14:31:02,296 | ^~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:02,296 | PyLong_AsVoidPtr 2023-09-08T14:31:02,358 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_save_subset_partitionmap(PyObject*, PyObject*)’: 2023-09-08T14:31:02,359 khmer/_khmermodule.cc:3389:41: error: ‘PyCObject_AsVoidPtr’ was not declared in this scope; did you mean ‘PyLong_AsVoidPtr’? 2023-09-08T14:31:02,359 3389 | subset_p = (khmer::SubsetPartition *) PyCObject_AsVoidPtr(subset_obj); 2023-09-08T14:31:02,360 | ^~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:02,361 | PyLong_AsVoidPtr 2023-09-08T14:31:02,389 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_load_subset_partitionmap(PyObject*, PyObject*)’: 2023-09-08T14:31:02,390 khmer/_khmermodule.cc:3420:10: error: ‘PyCObject_FromVoidPtr’ was not declared in this scope; did you mean ‘PyLong_FromVoidPtr’? 2023-09-08T14:31:02,391 3420 | return PyCObject_FromVoidPtr(subset_p, free_subset_partition_info); 2023-09-08T14:31:02,392 | ^~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:02,392 | PyLong_FromVoidPtr 2023-09-08T14:31:02,413 khmer/_khmermodule.cc: In function ‘PyObject* hashbits__get_tag_density(PyObject*, PyObject*)’: 2023-09-08T14:31:02,414 khmer/_khmermodule.cc:3449:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:02,414 3449 | return PyInt_FromLong(d); 2023-09-08T14:31:02,415 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:02,416 | PyLong_FromLong 2023-09-08T14:31:02,443 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_merge2_subset(PyObject*, PyObject*)’: 2023-09-08T14:31:02,444 khmer/_khmermodule.cc:3465:42: error: ‘PyCObject_AsVoidPtr’ was not declared in this scope; did you mean ‘PyLong_AsVoidPtr’? 2023-09-08T14:31:02,445 3465 | subset1_p = (khmer::SubsetPartition *) PyCObject_AsVoidPtr(subset1_obj); 2023-09-08T14:31:02,445 | ^~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:02,446 | PyLong_AsVoidPtr 2023-09-08T14:31:02,473 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_merge2_from_disk(PyObject*, PyObject*)’: 2023-09-08T14:31:02,474 khmer/_khmermodule.cc:3491:42: error: ‘PyCObject_AsVoidPtr’ was not declared in this scope; did you mean ‘PyLong_AsVoidPtr’? 2023-09-08T14:31:02,475 3491 | subset1_p = (khmer::SubsetPartition *) PyCObject_AsVoidPtr(subset1_obj); 2023-09-08T14:31:02,475 | ^~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:02,476 | PyLong_AsVoidPtr 2023-09-08T14:31:02,504 khmer/_khmermodule.cc: In function ‘PyObject* hashbits__validate_subset_partitionmap(PyObject*, PyObject*)’: 2023-09-08T14:31:02,505 khmer/_khmermodule.cc:3512:41: error: ‘PyCObject_AsVoidPtr’ was not declared in this scope; did you mean ‘PyLong_AsVoidPtr’? 2023-09-08T14:31:02,505 3512 | subset_p = (khmer::SubsetPartition *) PyCObject_AsVoidPtr(subset_obj); 2023-09-08T14:31:02,506 | ^~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:02,507 | PyLong_AsVoidPtr 2023-09-08T14:31:02,529 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_join_partitions(PyObject*, PyObject*)’: 2023-09-08T14:31:02,530 khmer/_khmermodule.cc:3548:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:02,530 3548 | return PyInt_FromLong(p1); 2023-09-08T14:31:02,531 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:02,532 | PyLong_FromLong 2023-09-08T14:31:02,552 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_get_partition_id(PyObject*, PyObject*)’: 2023-09-08T14:31:02,553 khmer/_khmermodule.cc:3565:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:02,554 3565 | return PyInt_FromLong(partition_id); 2023-09-08T14:31:02,554 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:02,555 | PyLong_FromLong 2023-09-08T14:31:02,586 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_trim_on_density_explosion(PyObject*, PyObject*)’: 2023-09-08T14:31:02,587 khmer/_khmermodule.cc:3689:25: error: ‘PyString_FromStringAndSize’ was not declared in this scope; did you mean ‘PyBytes_FromStringAndSize’? 2023-09-08T14:31:02,587 3689 | PyObject * trim_seq = PyString_FromStringAndSize(seq, trim_at); 2023-09-08T14:31:02,588 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:02,589 | PyBytes_FromStringAndSize 2023-09-08T14:31:02,610 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_get_ksize(PyObject*, PyObject*)’: 2023-09-08T14:31:02,611 khmer/_khmermodule.cc:3738:10: error: ‘PyInt_FromLong’ was not declared in this scope; did you mean ‘PyLong_FromLong’? 2023-09-08T14:31:02,612 3738 | return PyInt_FromLong(k); 2023-09-08T14:31:02,612 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:02,613 | PyLong_FromLong 2023-09-08T14:31:02,651 In file included from /usr/include/python3.11/Python.h:38: 2023-09-08T14:31:02,651 khmer/_khmermodule.cc: In function ‘PyObject* hashbits_extract_unique_paths(PyObject*, PyObject*)’: 2023-09-08T14:31:02,652 khmer/_khmermodule.cc:3782:27: error: ‘PyString_FromString’ was not declared in this scope; did you mean ‘PyLong_FromString’? 2023-09-08T14:31:02,653 3782 | PyList_SET_ITEM(x, i, PyString_FromString(results[i].c_str())); 2023-09-08T14:31:02,653 | ^~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:02,654 /usr/include/python3.11/pyport.h:24:38: note: in definition of macro ‘_Py_CAST’ 2023-09-08T14:31:02,654 24 | #define _Py_CAST(type, expr) ((type)(expr)) 2023-09-08T14:31:02,655 | ^~~~ 2023-09-08T14:31:02,655 /usr/include/python3.11/cpython/listobject.h:50:48: note: in expansion of macro ‘_PyObject_CAST’ 2023-09-08T14:31:02,656 50 | PyList_SET_ITEM(_PyObject_CAST(op), index, _PyObject_CAST(value)) 2023-09-08T14:31:02,657 | ^~~~~~~~~~~~~~ 2023-09-08T14:31:02,657 khmer/_khmermodule.cc:3782:5: note: in expansion of macro ‘PyList_SET_ITEM’ 2023-09-08T14:31:02,658 3782 | PyList_SET_ITEM(x, i, PyString_FromString(results[i].c_str())); 2023-09-08T14:31:02,659 | ^~~~~~~~~~~~~~~ 2023-09-08T14:31:02,680 khmer/_khmermodule.cc: In function ‘PyObject* khmer_hashbits_getattr(PyObject*, char*)’: 2023-09-08T14:31:02,681 khmer/_khmermodule.cc:3893:10: error: ‘Py_FindMethod’ was not declared in this scope; did you mean ‘PyCMethod’? 2023-09-08T14:31:02,681 3893 | return Py_FindMethod(khmer_hashbits_methods, obj, name); 2023-09-08T14:31:02,682 | ^~~~~~~~~~~~~ 2023-09-08T14:31:02,683 | PyCMethod 2023-09-08T14:31:02,710 khmer/_khmermodule.cc: In function ‘PyObject* khmer_readaligner_getattr(PyObject*, char*)’: 2023-09-08T14:31:02,711 khmer/_khmermodule.cc:3967:10: error: ‘Py_FindMethod’ was not declared in this scope; did you mean ‘PyCMethod’? 2023-09-08T14:31:02,711 3967 | return Py_FindMethod(khmer_ReadAligner_methods, obj, name); 2023-09-08T14:31:02,712 | ^~~~~~~~~~~~~ 2023-09-08T14:31:02,713 | PyCMethod 2023-09-08T14:31:02,713 khmer/_khmermodule.cc: At global scope: 2023-09-08T14:31:02,714 khmer/_khmermodule.cc:3985:5: error: invalid conversion from ‘const char*’ to ‘Py_ssize_t’ {aka ‘int’} [-fpermissive] 2023-09-08T14:31:02,714 3985 | "ReadAligner", sizeof(khmer_ReadAlignerObject), 2023-09-08T14:31:02,715 | ^~~~~~~~~~~~~ 2023-09-08T14:31:02,716 | | 2023-09-08T14:31:02,716 | const char* 2023-09-08T14:31:02,717 khmer/_khmermodule.cc:3987:5: error: invalid conversion from ‘void (*)(PyObject*)’ {aka ‘void (*)(_object*)’} to ‘Py_ssize_t’ {aka ‘int’} [-fpermissive] 2023-09-08T14:31:02,718 3987 | khmer_readaligner_dealloc, /*tp_dealloc*/ 2023-09-08T14:31:02,718 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:02,719 | | 2023-09-08T14:31:02,719 | void (*)(PyObject*) {aka void (*)(_object*)} 2023-09-08T14:31:02,720 khmer/_khmermodule.cc:3989:5: error: invalid conversion from ‘PyObject* (*)(PyObject*, char*)’ {aka ‘_object* (*)(_object*, char*)’} to ‘setattrfunc’ {aka ‘int (*)(_object*, char*, _object*)’} [-fpermissive] 2023-09-08T14:31:02,721 3989 | khmer_readaligner_getattr, /*tp_getattr*/ 2023-09-08T14:31:02,721 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:02,722 | | 2023-09-08T14:31:02,723 | PyObject* (*)(PyObject*, char*) {aka _object* (*)(_object*, char*)} 2023-09-08T14:31:02,723 /usr/include/python3.11/object.h:423:54: error: invalid conversion from ‘int’ to ‘const char*’ [-fpermissive] 2023-09-08T14:31:02,724 422 | #define Py_TPFLAGS_DEFAULT ( \ 2023-09-08T14:31:02,725 | ~~~ 2023-09-08T14:31:02,725 423 | Py_TPFLAGS_HAVE_STACKLESS_EXTENSION | \ 2023-09-08T14:31:02,726 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2023-09-08T14:31:02,727 | | 2023-09-08T14:31:02,727 | int 2023-09-08T14:31:02,728 424 | 0) 2023-09-08T14:31:02,729 | ~~ 2023-09-08T14:31:02,729 khmer/_khmermodule.cc:4002:5: note: in expansion of macro ‘Py_TPFLAGS_DEFAULT’ 2023-09-08T14:31:02,730 4002 | Py_TPFLAGS_DEFAULT, /*tp_flags*/ 2023-09-08T14:31:02,731 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:02,731 khmer/_khmermodule.cc:4003:5: error: cannot convert ‘const char*’ to ‘traverseproc’ {aka ‘int (*)(_object*, int (*)(_object*, void*), void*)’} in initialization 2023-09-08T14:31:02,732 4003 | "ReadAligner object", /* tp_doc */ 2023-09-08T14:31:02,733 | ^~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:02,734 | | 2023-09-08T14:31:02,734 | const char* 2023-09-08T14:31:02,754 khmer/_khmermodule.cc: In function ‘PyObject* reverse_hash(PyObject*, PyObject*)’: 2023-09-08T14:31:02,755 khmer/_khmermodule.cc:4195:10: error: ‘PyString_FromString’ was not declared in this scope; did you mean ‘PyLong_FromString’? 2023-09-08T14:31:02,755 4195 | return PyString_FromString(khmer::_revhash(val, ksize).c_str()); 2023-09-08T14:31:02,756 | ^~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:02,756 | PyLong_FromString 2023-09-08T14:31:02,757 khmer/_khmermodule.cc: At global scope: 2023-09-08T14:31:02,757 khmer/_khmermodule.cc:4251:1: error: conflicting declaration of C function ‘PyObject* init_khmer()’ 2023-09-08T14:31:02,758 4251 | init_khmer(void) 2023-09-08T14:31:02,759 | ^~~~~~~~~~ 2023-09-08T14:31:02,759 khmer/_khmermodule.cc:30:8: note: previous declaration ‘void init_khmer()’ 2023-09-08T14:31:02,760 30 | void init_khmer(); 2023-09-08T14:31:02,760 | ^~~~~~~~~~ 2023-09-08T14:31:02,761 khmer/_khmermodule.cc: In function ‘PyObject* init_khmer()’: 2023-09-08T14:31:02,762 khmer/_khmermodule.cc:4256:22: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘ob_type’ 2023-09-08T14:31:02,762 4256 | khmer_ConfigType.ob_type = &PyType_Type; 2023-09-08T14:31:02,763 | ^~~~~~~ 2023-09-08T14:31:02,763 khmer/_khmermodule.cc:4257:22: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘ob_type’ 2023-09-08T14:31:02,764 4257 | khmer_KTableType.ob_type = &PyType_Type; 2023-09-08T14:31:02,765 | ^~~~~~~ 2023-09-08T14:31:02,765 khmer/_khmermodule.cc:4258:29: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘ob_type’ 2023-09-08T14:31:02,766 4258 | khmer_KCountingHashType.ob_type = &PyType_Type; 2023-09-08T14:31:02,767 | ^~~~~~~ 2023-09-08T14:31:02,782 khmer/_khmermodule.cc:4261:9: error: ‘Py_InitModule’ was not declared in this scope 2023-09-08T14:31:02,782 4261 | m = Py_InitModule( "_khmer", KhmerMethods ); 2023-09-08T14:31:02,783 | ^~~~~~~~~~~~~ 2023-09-08T14:31:02,784 khmer/_khmermodule.cc:4263:9: error: return-statement with no value, in function returning ‘PyObject*’ {aka ‘_object*’} [-fpermissive] 2023-09-08T14:31:02,784 4263 | return; 2023-09-08T14:31:02,785 | ^~~~~~ 2023-09-08T14:31:02,785 khmer/_khmermodule.cc:4268:9: error: return-statement with no value, in function returning ‘PyObject*’ {aka ‘_object*’} [-fpermissive] 2023-09-08T14:31:02,786 4268 | return; 2023-09-08T14:31:02,787 | ^~~~~~ 2023-09-08T14:31:02,787 khmer/_khmermodule.cc:4275:9: error: return-statement with no value, in function returning ‘PyObject*’ {aka ‘_object*’} [-fpermissive] 2023-09-08T14:31:02,788 4275 | return; 2023-09-08T14:31:02,789 | ^~~~~~ 2023-09-08T14:31:02,789 khmer/_khmermodule.cc:4281:9: error: return-statement with no value, in function returning ‘PyObject*’ {aka ‘_object*’} [-fpermissive] 2023-09-08T14:31:02,790 4281 | return; 2023-09-08T14:31:02,790 | ^~~~~~ 2023-09-08T14:31:02,791 khmer/_khmermodule.cc:4284:9: error: return-statement with no value, in function returning ‘PyObject*’ {aka ‘_object*’} [-fpermissive] 2023-09-08T14:31:02,792 4284 | return; 2023-09-08T14:31:02,792 | ^~~~~~ 2023-09-08T14:31:03,622 /usr/include/python3.11/object.h:506:34: warning: control reaches end of non-void function [-Wreturn-type] 2023-09-08T14:31:03,623 506 | # define Py_INCREF(op) Py_INCREF(_PyObject_CAST(op)) 2023-09-08T14:31:03,624 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2023-09-08T14:31:03,624 khmer/_khmermodule.cc:4286:5: note: in expansion of macro ‘Py_INCREF’ 2023-09-08T14:31:03,625 4286 | Py_INCREF(&ReadParser_Type); 2023-09-08T14:31:03,626 | ^~~~~~~~~ 2023-09-08T14:31:03,645 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-08T14:31:03,767 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-08T14:31:03,780 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-08T14:31:03,780 exec(compile('"'"''"'"''"'"' 2023-09-08T14:31:03,780 # This is -- a caller that pip uses to run setup.py 2023-09-08T14:31:03,780 # 2023-09-08T14:31:03,780 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-08T14:31:03,780 # import from `distutils.core` to work with newer packaging standards. 2023-09-08T14:31:03,780 # - It provides a clear error message when setuptools is not installed. 2023-09-08T14:31:03,780 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-08T14:31:03,780 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-08T14:31:03,780 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-08T14:31:03,780 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-08T14:31:03,780 import os, sys, tokenize 2023-09-08T14:31:03,780 2023-09-08T14:31:03,780 try: 2023-09-08T14:31:03,780 import setuptools 2023-09-08T14:31:03,780 except ImportError as error: 2023-09-08T14:31:03,780 print( 2023-09-08T14:31:03,780 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-08T14:31:03,780 "the build environment.", 2023-09-08T14:31:03,780 file=sys.stderr, 2023-09-08T14:31:03,780 ) 2023-09-08T14:31:03,780 sys.exit(1) 2023-09-08T14:31:03,780 2023-09-08T14:31:03,780 __file__ = %r 2023-09-08T14:31:03,780 sys.argv[0] = __file__ 2023-09-08T14:31:03,780 2023-09-08T14:31:03,780 if os.path.exists(__file__): 2023-09-08T14:31:03,780 filename = __file__ 2023-09-08T14:31:03,780 with tokenize.open(__file__) as f: 2023-09-08T14:31:03,780 setup_py_code = f.read() 2023-09-08T14:31:03,780 else: 2023-09-08T14:31:03,780 filename = "" 2023-09-08T14:31:03,780 setup_py_code = "from setuptools import setup; setup()" 2023-09-08T14:31:03,780 2023-09-08T14:31:03,780 exec(compile(setup_py_code, filename, "exec")) 2023-09-08T14:31:03,780 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-sic10ow8/khmer_2befc33e0644430cbeee3baa46604828/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-68r9syty[/] 2023-09-08T14:31:03,781 [bold magenta]cwd[/]: /tmp/pip-wheel-sic10ow8/khmer_2befc33e0644430cbeee3baa46604828/ 2023-09-08T14:31:03,781 Building wheel for khmer (setup.py): finished with status 'error' 2023-09-08T14:31:03,782 ERROR: Failed building wheel for khmer 2023-09-08T14:31:03,784 Running setup.py clean for khmer 2023-09-08T14:31:03,785 Running command python setup.py clean 2023-09-08T14:31:04,540 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-08T14:31:04,541 !! 2023-09-08T14:31:04,542 ******************************************************************************** 2023-09-08T14:31:04,542 Requirements should be satisfied by a PEP 517 installer. 2023-09-08T14:31:04,543 If you are using pip, you can try `pip install --use-pep517`. 2023-09-08T14:31:04,543 ******************************************************************************** 2023-09-08T14:31:04,544 !! 2023-09-08T14:31:04,545 dist.fetch_build_eggs(dist.setup_requires) 2023-09-08T14:31:07,857 running clean 2023-09-08T14:31:08,130 removing 'build/temp.linux-armv7l-cpython-311' (and everything under it) 2023-09-08T14:31:08,134 removing 'build/lib.linux-armv7l-cpython-311' (and everything under it) 2023-09-08T14:31:08,140 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-08T14:31:08,140 'build/scripts-3.11' does not exist -- can't clean it 2023-09-08T14:31:08,141 removing 'build' 2023-09-08T14:31:08,270 Failed to build khmer 2023-09-08T14:31:08,271 ERROR: Failed to build one or more wheels 2023-09-08T14:31:08,272 Exception information: 2023-09-08T14:31:08,272 Traceback (most recent call last): 2023-09-08T14:31:08,272 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-08T14:31:08,272 status = run_func(*args) 2023-09-08T14:31:08,272 ^^^^^^^^^^^^^^^ 2023-09-08T14:31:08,272 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-08T14:31:08,272 return func(self, options, args) 2023-09-08T14:31:08,272 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T14:31:08,272 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-08T14:31:08,272 raise CommandError("Failed to build one or more wheels") 2023-09-08T14:31:08,272 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-08T14:31:08,275 Removed build tracker: '/tmp/pip-build-tracker-yu7vnem7'