2023-09-08T16:02:45,595 Created temporary directory: /tmp/pip-build-tracker-t8tn4pa4
2023-09-08T16:02:45,596 Initialized build tracking at /tmp/pip-build-tracker-t8tn4pa4
2023-09-08T16:02:45,597 Created build tracker: /tmp/pip-build-tracker-t8tn4pa4
2023-09-08T16:02:45,597 Entered build tracker: /tmp/pip-build-tracker-t8tn4pa4
2023-09-08T16:02:45,598 Created temporary directory: /tmp/pip-wheel-_hu55f_2
2023-09-08T16:02:45,601 Created temporary directory: /tmp/pip-ephem-wheel-cache-81f0576o
2023-09-08T16:02:45,623 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-08T16:02:45,627 2 location(s) to search for versions of clustalo:
2023-09-08T16:02:45,627 * https://pypi.org/simple/clustalo/
2023-09-08T16:02:45,627 * https://www.piwheels.org/simple/clustalo/
2023-09-08T16:02:45,627 Fetching project page and analyzing links: https://pypi.org/simple/clustalo/
2023-09-08T16:02:45,628 Getting page https://pypi.org/simple/clustalo/
2023-09-08T16:02:45,630 Found index url https://pypi.org/simple/
2023-09-08T16:02:45,781 Fetched page https://pypi.org/simple/clustalo/ as application/vnd.pypi.simple.v1+json
2023-09-08T16:02:45,784   Found link https://files.pythonhosted.org/packages/e4/ec/57f58e09521cd16cf676c99dc959c4d0d58ed38e966b6dd743a9499cdbf2/clustalo-0.1.macosx-10.9-x86_64.tar.gz (from https://pypi.org/simple/clustalo/), version: 0.1.macosx-10.9-x86_64
2023-09-08T16:02:45,784   Found link https://files.pythonhosted.org/packages/ef/32/5414c43fb3d011a28ee337f7bf201c8fe8b01b2605af7bf9fe6ff32fa84d/clustalo-0.1.tar.gz (from https://pypi.org/simple/clustalo/), version: 0.1
2023-09-08T16:02:45,785   Found link https://files.pythonhosted.org/packages/33/5b/491d3340dece281bd6d62f617e12a688fee7d26ab45a48de9909cec18b08/clustalo-0.1.1.macosx-10.9-x86_64.tar.gz (from https://pypi.org/simple/clustalo/), version: 0.1.1.macosx-10.9-x86_64
2023-09-08T16:02:45,786   Found link https://files.pythonhosted.org/packages/88/f6/05689339186b64b7e7671ceac15c73a6e3846f4749077f8eeb29d3df09ff/clustalo-0.1.1.tar.gz (from https://pypi.org/simple/clustalo/), version: 0.1.1
2023-09-08T16:02:45,786   Skipping link: No binaries permitted for clustalo: https://files.pythonhosted.org/packages/e2/6a/f6ef84019b667b10bee110f38587ce893ac3c5ad5a9085e7f7698610170c/clustalo-0.1.2-cp27-cp27m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/clustalo/)
2023-09-08T16:02:45,787   Skipping link: No binaries permitted for clustalo: https://files.pythonhosted.org/packages/66/9e/a0d812ee95b4452bfaaf6ee578c325def6ca35b976527ca9ecd1b86989b6/clustalo-0.1.2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/clustalo/)
2023-09-08T16:02:45,788   Found link https://files.pythonhosted.org/packages/13/57/043f6a470fc22c15d1d1ec1e89c11123a5dc61af9aa04ff16f9e9747a1cc/clustalo-0.1.2.tar.gz (from https://pypi.org/simple/clustalo/), version: 0.1.2
2023-09-08T16:02:45,789 Fetching project page and analyzing links: https://www.piwheels.org/simple/clustalo/
2023-09-08T16:02:45,789 Getting page https://www.piwheels.org/simple/clustalo/
2023-09-08T16:02:45,791 Found index url https://www.piwheels.org/simple/
2023-09-08T16:02:46,111 Fetched page https://www.piwheels.org/simple/clustalo/ as text/html
2023-09-08T16:02:46,112 Skipping link: not a file: https://www.piwheels.org/simple/clustalo/
2023-09-08T16:02:46,112 Skipping link: not a file: https://pypi.org/simple/clustalo/
2023-09-08T16:02:46,131 Given no hashes to check 1 links for project 'clustalo': discarding no candidates
2023-09-08T16:02:46,149 Collecting clustalo==0.1.1
2023-09-08T16:02:46,152   Created temporary directory: /tmp/pip-unpack-baifwo5z
2023-09-08T16:02:46,364   Downloading clustalo-0.1.1.tar.gz (3.0 kB)
2023-09-08T16:02:46,378   Added clustalo==0.1.1 from https://files.pythonhosted.org/packages/88/f6/05689339186b64b7e7671ceac15c73a6e3846f4749077f8eeb29d3df09ff/clustalo-0.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-t8tn4pa4'
2023-09-08T16:02:46,380   Running setup.py (path:/tmp/pip-wheel-_hu55f_2/clustalo_cb611966063947cba890b4109c3f15ae/setup.py) egg_info for package clustalo
2023-09-08T16:02:46,380   Created temporary directory: /tmp/pip-pip-egg-info-ctc8o8h7
2023-09-08T16:02:46,381   Preparing metadata (setup.py): started
2023-09-08T16:02:46,383   Running command python setup.py egg_info
2023-09-08T16:02:47,584   Preparing metadata (setup.py): finished with status 'done'
2023-09-08T16:02:47,587   Source in /tmp/pip-wheel-_hu55f_2/clustalo_cb611966063947cba890b4109c3f15ae has version 0.1.1, which satisfies requirement clustalo==0.1.1 from https://files.pythonhosted.org/packages/88/f6/05689339186b64b7e7671ceac15c73a6e3846f4749077f8eeb29d3df09ff/clustalo-0.1.1.tar.gz
2023-09-08T16:02:47,588   Removed clustalo==0.1.1 from https://files.pythonhosted.org/packages/88/f6/05689339186b64b7e7671ceac15c73a6e3846f4749077f8eeb29d3df09ff/clustalo-0.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-t8tn4pa4'
2023-09-08T16:02:47,592 Created temporary directory: /tmp/pip-unpack-x9m7iz7m
2023-09-08T16:02:47,593 Created temporary directory: /tmp/pip-unpack-t3unuy49
2023-09-08T16:02:47,595 Building wheels for collected packages: clustalo
2023-09-08T16:02:47,599   Created temporary directory: /tmp/pip-wheel-il5ga5oa
2023-09-08T16:02:47,600   Building wheel for clustalo (setup.py): started
2023-09-08T16:02:47,601   Destination directory: /tmp/pip-wheel-il5ga5oa
2023-09-08T16:02:47,601   Running command python setup.py bdist_wheel
2023-09-08T16:02:49,513   clustalo.c:2:10: fatal error: clustal-omega.h: No such file or directory
2023-09-08T16:02:49,513       2 | #include <clustal-omega.h>
2023-09-08T16:02:49,514         |          ^~~~~~~~~~~~~~~~~
2023-09-08T16:02:49,514   compilation terminated.
2023-09-08T16:02:49,518   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2023-09-08T16:02:49,661   ERROR: [present-rich] python setup.py bdist_wheel exited with 1
2023-09-08T16:02:49,674   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2023-09-08T16:02:49,674   exec(compile('"'"''"'"''"'"'
2023-09-08T16:02:49,674   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-08T16:02:49,674   #
2023-09-08T16:02:49,674   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-08T16:02:49,674   #   import from `distutils.core` to work with newer packaging standards.
2023-09-08T16:02:49,674   # - It provides a clear error message when setuptools is not installed.
2023-09-08T16:02:49,674   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-08T16:02:49,674   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-08T16:02:49,674   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-08T16:02:49,674   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-08T16:02:49,674   import os, sys, tokenize
2023-09-08T16:02:49,674   
2023-09-08T16:02:49,674   try:
2023-09-08T16:02:49,674       import setuptools
2023-09-08T16:02:49,674   except ImportError as error:
2023-09-08T16:02:49,674       print(
2023-09-08T16:02:49,674           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-08T16:02:49,674           "the build environment.",
2023-09-08T16:02:49,674           file=sys.stderr,
2023-09-08T16:02:49,674       )
2023-09-08T16:02:49,674       sys.exit(1)
2023-09-08T16:02:49,674   
2023-09-08T16:02:49,674   __file__ = %r
2023-09-08T16:02:49,674   sys.argv[0] = __file__
2023-09-08T16:02:49,674   
2023-09-08T16:02:49,674   if os.path.exists(__file__):
2023-09-08T16:02:49,674       filename = __file__
2023-09-08T16:02:49,674       with tokenize.open(__file__) as f:
2023-09-08T16:02:49,674           setup_py_code = f.read()
2023-09-08T16:02:49,674   else:
2023-09-08T16:02:49,674       filename = "<auto-generated setuptools caller>"
2023-09-08T16:02:49,674       setup_py_code = "from setuptools import setup; setup()"
2023-09-08T16:02:49,674   
2023-09-08T16:02:49,674   exec(compile(setup_py_code, filename, "exec"))
2023-09-08T16:02:49,674   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-_hu55f_2/clustalo_cb611966063947cba890b4109c3f15ae/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-il5ga5oa[/]
2023-09-08T16:02:49,674   [bold magenta]cwd[/]: /tmp/pip-wheel-_hu55f_2/clustalo_cb611966063947cba890b4109c3f15ae/
2023-09-08T16:02:49,675   Building wheel for clustalo (setup.py): finished with status 'error'
2023-09-08T16:02:49,676   ERROR: Failed building wheel for clustalo
2023-09-08T16:02:49,677   Running setup.py clean for clustalo
2023-09-08T16:02:49,678   Running command python setup.py clean
2023-09-08T16:02:50,661   'build/lib.linux-armv7l-cpython-311' does not exist -- can't clean it
2023-09-08T16:02:50,661   'build/bdist.linux-armv7l' does not exist -- can't clean it
2023-09-08T16:02:50,662   'build/scripts-3.11' does not exist -- can't clean it
2023-09-08T16:02:50,771 Failed to build clustalo
2023-09-08T16:02:50,772 ERROR: Failed to build one or more wheels
2023-09-08T16:02:50,773 Exception information:
2023-09-08T16:02:50,773 Traceback (most recent call last):
2023-09-08T16:02:50,773   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-08T16:02:50,773     status = run_func(*args)
2023-09-08T16:02:50,773              ^^^^^^^^^^^^^^^
2023-09-08T16:02:50,773   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-08T16:02:50,773     return func(self, options, args)
2023-09-08T16:02:50,773            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T16:02:50,773   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run
2023-09-08T16:02:50,773     raise CommandError("Failed to build one or more wheels")
2023-09-08T16:02:50,773 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2023-09-08T16:02:50,776 Removed build tracker: '/tmp/pip-build-tracker-t8tn4pa4'