2023-09-11T10:50:07,826 Created temporary directory: /tmp/pip-build-tracker-l9vksxf7 2023-09-11T10:50:07,828 Initialized build tracking at /tmp/pip-build-tracker-l9vksxf7 2023-09-11T10:50:07,828 Created build tracker: /tmp/pip-build-tracker-l9vksxf7 2023-09-11T10:50:07,828 Entered build tracker: /tmp/pip-build-tracker-l9vksxf7 2023-09-11T10:50:07,829 Created temporary directory: /tmp/pip-wheel-4397n63w 2023-09-11T10:50:07,832 Created temporary directory: /tmp/pip-ephem-wheel-cache-8heht_gp 2023-09-11T10:50:07,854 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-11T10:50:07,858 2 location(s) to search for versions of denovonear: 2023-09-11T10:50:07,858 * https://pypi.org/simple/denovonear/ 2023-09-11T10:50:07,858 * https://www.piwheels.org/simple/denovonear/ 2023-09-11T10:50:07,858 Fetching project page and analyzing links: https://pypi.org/simple/denovonear/ 2023-09-11T10:50:07,859 Getting page https://pypi.org/simple/denovonear/ 2023-09-11T10:50:07,861 Found index url https://pypi.org/simple/ 2023-09-11T10:50:08,074 Fetched page https://pypi.org/simple/denovonear/ as application/vnd.pypi.simple.v1+json 2023-09-11T10:50:08,087 Found link https://files.pythonhosted.org/packages/5f/25/aa72bf3769052c8002b830283a8bbacb2cd6e1a2a22c12ee9859022fece0/denovonear-0.5.0.tar.gz (from https://pypi.org/simple/denovonear/), version: 0.5.0 2023-09-11T10:50:08,088 Found link https://files.pythonhosted.org/packages/0a/62/5608d43d65589a21a7f6b725ec78fcce289da0e725280b7d874f8ddbe3ad/denovonear-0.5.1.tar.gz (from https://pypi.org/simple/denovonear/), version: 0.5.1 2023-09-11T10:50:08,088 Found link https://files.pythonhosted.org/packages/75/b3/535a16bff66cb3cb259afae1d4e1003258b4cb4af7bc81c7b2c76adc6ff2/denovonear-0.5.2.tar.gz (from https://pypi.org/simple/denovonear/), version: 0.5.2 2023-09-11T10:50:08,089 Found link 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https://files.pythonhosted.org/packages/51/a0/1e7699fe5b5a6ab27d2916c14ff76000d8026f85a668b1b50c7b51cdf187/denovonear-0.8.6.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.6 2023-09-11T10:50:08,101 Found link https://files.pythonhosted.org/packages/05/b7/51b6fa99afd7e2f06e37c1fb17f4e718dfe6fd88f99923aa504ba91c0d21/denovonear-0.9.0.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.9.0 2023-09-11T10:50:08,102 Found link https://files.pythonhosted.org/packages/ae/32/7045cbf27fe7e43ae39cba1d19346228c7b0a1024a66a8dcab60945c751e/denovonear-0.9.1.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.9.1 2023-09-11T10:50:08,103 Found link https://files.pythonhosted.org/packages/d1/cc/a5808715b8059599540330936ecfabfccc30e7ecdb8e8b887f457dd986d2/denovonear-0.9.2.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.9.2 2023-09-11T10:50:08,103 Found link https://files.pythonhosted.org/packages/93/ff/4342795158be053b54c5d74cb0fcd52feeb33e61155ccb76d437cd06b139/denovonear-0.9.3.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.9.3 2023-09-11T10:50:08,104 Found link https://files.pythonhosted.org/packages/02/48/8f2b2f11c127e1bf317ae078a555b85bb2665f70cf6672bd0414fbbd7fd0/denovonear-0.9.4.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.9.4 2023-09-11T10:50:08,105 Found link https://files.pythonhosted.org/packages/62/a1/6b40eaef00037c3c56e82f095d753df6d599f8f874febc3ee03156ca64a1/denovonear-0.9.5.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.9.5 2023-09-11T10:50:08,106 Found link https://files.pythonhosted.org/packages/01/46/239a02cf2658b4d90cfd6cd992f4bdfd005470dab0f80059bb1d8f2b0cbd/denovonear-0.9.6.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.9.6 2023-09-11T10:50:08,108 Found link https://files.pythonhosted.org/packages/69/66/64b9e8478912776a898522ec981e17ea828f0d2404a202822a1bf8f17924/denovonear-0.9.7.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.9.7 2023-09-11T10:50:08,109 Found link https://files.pythonhosted.org/packages/1d/ab/fde01a1b55c35ed26ac2efab95c534885523e1deb326b73a26c85729ff3d/denovonear-0.9.8.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.9.8 2023-09-11T10:50:08,110 Found link https://files.pythonhosted.org/packages/68/27/a9d9b5774581f96b261e6e3ad29d507b758b00f439ba79395bfb2308c899/denovonear-0.9.9.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.9.9 2023-09-11T10:50:08,111 Found link https://files.pythonhosted.org/packages/96/33/ac5e75b03040450f4641a95439641072b601fad0907cd741c195ffbe8e3e/denovonear-0.9.10.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.9.10 2023-09-11T10:50:08,112 Found link https://files.pythonhosted.org/packages/12/9f/45dedde087739cf468a82e996894170ca0d714f6fea3f5d51b271f901dce/denovonear-0.9.11.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.9.11 2023-09-11T10:50:08,113 Found link https://files.pythonhosted.org/packages/be/7c/9ea6d2254514972a9fdc7ae5c63f9fd9fadc806ca1ecd2a9736dc562a7bf/denovonear-0.9.12.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.9.12 2023-09-11T10:50:08,114 Found link https://files.pythonhosted.org/packages/a8/81/98b198863831fedfca0a2258b11f5bf3547c26b77161b5e4c4fce756bb7d/denovonear-0.9.13.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.9.13 2023-09-11T10:50:08,115 Found link https://files.pythonhosted.org/packages/65/82/fe860fc52789f6a1fa32fa956b7da6b9ab5fa86a5daedc3a3ff9c75c1dbb/denovonear-0.9.14.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.9.14 2023-09-11T10:50:08,116 Found 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https://files.pythonhosted.org/packages/d6/5e/ff94336bbde5276639186d9a16d19e2aaeee72944f6478a293021bb2a269/denovonear-0.9.16-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/denovonear/) (requires-python:>=3.8) 2023-09-11T10:50:08,124 Found link https://files.pythonhosted.org/packages/1c/75/d9936d228b26ca2fa0a00fbd5d14c2b9b7af9f54f4f1afe5b563fea7f156/denovonear-0.9.16.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.8), version: 0.9.16 2023-09-11T10:50:08,124 Skipping link: No binaries permitted for denovonear: https://files.pythonhosted.org/packages/26/52/36cc61443eab7e14895ff3cecc1ff21764c519723704b8d5e598e035579e/denovonear-0.10.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/denovonear/) (requires-python:>=3.8) 2023-09-11T10:50:08,125 Skipping link: No binaries permitted for denovonear: 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https://files.pythonhosted.org/packages/1a/0b/66bc15d6330e0f805f19d1cd5c33021f39e8a72e2da6345f9f29f9772af3/denovonear-0.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/denovonear/) (requires-python:>=3.8) 2023-09-11T10:50:08,130 Skipping link: No binaries permitted for denovonear: https://files.pythonhosted.org/packages/67/fd/020a23e9bae050a39b58ae5b6810ca3fa86eefc639176b586d20c4c31efc/denovonear-0.10.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/denovonear/) (requires-python:>=3.8) 2023-09-11T10:50:08,131 Found link https://files.pythonhosted.org/packages/5e/4a/d0ecf49c2c45da7ca379d4811fbf5f426d550e171bea25d42869c4bad147/denovonear-0.10.0.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.8), version: 0.10.0 2023-09-11T10:50:08,132 Skipping link: No binaries permitted for denovonear: 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https://files.pythonhosted.org/packages/17/4d/a6d42f793b4f33a7a662f0eb10f2d8dd1b0f4d021d6ee91ac317272ad07b/denovonear-0.10.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/denovonear/) (requires-python:>=3.8) 2023-09-11T10:50:08,137 Skipping link: No binaries permitted for denovonear: https://files.pythonhosted.org/packages/d5/a5/70a4c7f8ea55a6c28c1af39596a130bdcc810c4662f9a8f2728a09cb9dac/denovonear-0.10.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/denovonear/) (requires-python:>=3.8) 2023-09-11T10:50:08,137 Skipping link: No binaries permitted for denovonear: https://files.pythonhosted.org/packages/c0/89/988085dcb87761d53e23a722036428803bf44b4657109b5184f3e42f28ce/denovonear-0.10.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/denovonear/) (requires-python:>=3.8) 2023-09-11T10:50:08,138 Found link https://files.pythonhosted.org/packages/31/22/96469c9f34d20dd92581f79d349824e50613d8e8f93213d8f9006d2fc68e/denovonear-0.10.1.tar.gz (from https://pypi.org/simple/denovonear/) (requires-python:>=3.8), version: 0.10.1 2023-09-11T10:50:08,139 Fetching project page and analyzing links: https://www.piwheels.org/simple/denovonear/ 2023-09-11T10:50:08,140 Getting page https://www.piwheels.org/simple/denovonear/ 2023-09-11T10:50:08,141 Found index url https://www.piwheels.org/simple/ 2023-09-11T10:50:08,527 Fetched page https://www.piwheels.org/simple/denovonear/ as text/html 2023-09-11T10:50:08,570 Skipping link: No binaries permitted for denovonear: https://www.piwheels.org/simple/denovonear/denovonear-0.10.1-cp39-cp39-linux_armv7l.whl#sha256=74213d76f9c959594d135e0638d35ccfb4383603c233f3ab7dbcf15fdf9ba755 (from https://www.piwheels.org/simple/denovonear/) (requires-python:>=3.8) 2023-09-11T10:50:08,571 Skipping link: No binaries permitted for denovonear: 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https://www.piwheels.org/simple/denovonear/denovonear-0.5.0-py3-none-any.whl#sha256=2c89b66f43fab8b25680fd49e32aebb2a208618abce5f0474c0fcc92fda022e6 (from https://www.piwheels.org/simple/denovonear/) 2023-09-11T10:50:08,672 Skipping link: not a file: https://www.piwheels.org/simple/denovonear/ 2023-09-11T10:50:08,673 Skipping link: not a file: https://pypi.org/simple/denovonear/ 2023-09-11T10:50:08,695 Given no hashes to check 1 links for project 'denovonear': discarding no candidates 2023-09-11T10:50:08,714 Collecting denovonear==0.7.0 2023-09-11T10:50:08,717 Created temporary directory: /tmp/pip-unpack-uht6qz0o 2023-09-11T10:50:09,317 Downloading denovonear-0.7.0.tar.gz (215 kB) 2023-09-11T10:50:09,622 Added denovonear==0.7.0 from https://files.pythonhosted.org/packages/f4/74/2b095897dc12359e79c4a0c4e31bf703c91d3022a411644d939c31c4723d/denovonear-0.7.0.tar.gz to build tracker '/tmp/pip-build-tracker-l9vksxf7' 2023-09-11T10:50:09,624 Running setup.py (path:/tmp/pip-wheel-4397n63w/denovonear_ed2f66afd2c84475a30c80a9f9a22064/setup.py) egg_info for package denovonear 2023-09-11T10:50:09,624 Created temporary directory: /tmp/pip-pip-egg-info-vlbvmigw 2023-09-11T10:50:09,625 Preparing metadata (setup.py): started 2023-09-11T10:50:09,626 Running command python setup.py egg_info 2023-09-11T10:50:15,117 Compiling denovonear/weights.pyx because it changed. 2023-09-11T10:50:15,117 Compiling denovonear/transcript.pyx because it changed. 2023-09-11T10:50:15,118 Compiling denovonear/site_specific_rates.pyx because it changed. 2023-09-11T10:50:15,118 [1/3] Cythonizing denovonear/site_specific_rates.pyx 2023-09-11T10:50:15,119 [2/3] Cythonizing denovonear/transcript.pyx 2023-09-11T10:50:15,119 [3/3] Cythonizing denovonear/weights.pyx 2023-09-11T10:50:15,558 running egg_info 2023-09-11T10:50:15,559 creating /tmp/pip-pip-egg-info-vlbvmigw/denovonear.egg-info 2023-09-11T10:50:15,584 writing /tmp/pip-pip-egg-info-vlbvmigw/denovonear.egg-info/PKG-INFO 2023-09-11T10:50:15,588 writing dependency_links to /tmp/pip-pip-egg-info-vlbvmigw/denovonear.egg-info/dependency_links.txt 2023-09-11T10:50:15,589 writing entry points to /tmp/pip-pip-egg-info-vlbvmigw/denovonear.egg-info/entry_points.txt 2023-09-11T10:50:15,591 writing requirements to /tmp/pip-pip-egg-info-vlbvmigw/denovonear.egg-info/requires.txt 2023-09-11T10:50:15,592 writing top-level names to /tmp/pip-pip-egg-info-vlbvmigw/denovonear.egg-info/top_level.txt 2023-09-11T10:50:15,594 writing manifest file '/tmp/pip-pip-egg-info-vlbvmigw/denovonear.egg-info/SOURCES.txt' 2023-09-11T10:50:15,701 reading manifest file '/tmp/pip-pip-egg-info-vlbvmigw/denovonear.egg-info/SOURCES.txt' 2023-09-11T10:50:15,703 reading manifest template 'MANIFEST.in' 2023-09-11T10:50:15,712 writing manifest file '/tmp/pip-pip-egg-info-vlbvmigw/denovonear.egg-info/SOURCES.txt' 2023-09-11T10:50:16,052 Preparing metadata (setup.py): finished with status 'done' 2023-09-11T10:50:16,056 Source in /tmp/pip-wheel-4397n63w/denovonear_ed2f66afd2c84475a30c80a9f9a22064 has version 0.7.0, which satisfies requirement denovonear==0.7.0 from https://files.pythonhosted.org/packages/f4/74/2b095897dc12359e79c4a0c4e31bf703c91d3022a411644d939c31c4723d/denovonear-0.7.0.tar.gz 2023-09-11T10:50:16,057 Removed denovonear==0.7.0 from https://files.pythonhosted.org/packages/f4/74/2b095897dc12359e79c4a0c4e31bf703c91d3022a411644d939c31c4723d/denovonear-0.7.0.tar.gz from build tracker '/tmp/pip-build-tracker-l9vksxf7' 2023-09-11T10:50:16,062 Created temporary directory: /tmp/pip-unpack-49km7v4o 2023-09-11T10:50:16,063 Created temporary directory: /tmp/pip-unpack-qz7mur44 2023-09-11T10:50:16,068 Building wheels for collected packages: denovonear 2023-09-11T10:50:16,073 Created temporary directory: /tmp/pip-wheel-awtap4et 2023-09-11T10:50:16,073 Building wheel for denovonear (setup.py): started 2023-09-11T10:50:16,074 Destination directory: /tmp/pip-wheel-awtap4et 2023-09-11T10:50:16,075 Running command python setup.py bdist_wheel 2023-09-11T10:50:17,658 running bdist_wheel 2023-09-11T10:50:17,756 running build 2023-09-11T10:50:17,757 running build_py 2023-09-11T10:50:17,784 creating build 2023-09-11T10:50:17,785 creating build/lib.linux-armv7l-cpython-311 2023-09-11T10:50:17,786 creating build/lib.linux-armv7l-cpython-311/denovonear 2023-09-11T10:50:17,787 copying denovonear/log_transform_rates.py -> build/lib.linux-armv7l-cpython-311/denovonear 2023-09-11T10:50:17,789 copying denovonear/cluster_test.py -> build/lib.linux-armv7l-cpython-311/denovonear 2023-09-11T10:50:17,791 copying denovonear/load_mutation_rates.py -> build/lib.linux-armv7l-cpython-311/denovonear 2023-09-11T10:50:17,793 copying denovonear/load_de_novos.py -> build/lib.linux-armv7l-cpython-311/denovonear 2023-09-11T10:50:17,795 copying denovonear/__init__.py -> build/lib.linux-armv7l-cpython-311/denovonear 2023-09-11T10:50:17,796 copying denovonear/load_gene.py -> build/lib.linux-armv7l-cpython-311/denovonear 2023-09-11T10:50:17,798 copying denovonear/simulate.py -> build/lib.linux-armv7l-cpython-311/denovonear 2023-09-11T10:50:17,800 copying denovonear/ensembl_cache.py -> build/lib.linux-armv7l-cpython-311/denovonear 2023-09-11T10:50:17,802 copying denovonear/frameshift_rate.py -> build/lib.linux-armv7l-cpython-311/denovonear 2023-09-11T10:50:17,804 copying denovonear/__main__.py -> build/lib.linux-armv7l-cpython-311/denovonear 2023-09-11T10:50:17,806 copying denovonear/ensembl_requester.py -> build/lib.linux-armv7l-cpython-311/denovonear 2023-09-11T10:50:17,809 creating build/lib.linux-armv7l-cpython-311/denovonear/data 2023-09-11T10:50:17,810 copying denovonear/data/rates.txt -> build/lib.linux-armv7l-cpython-311/denovonear/data 2023-09-11T10:50:17,812 copying denovonear/weights.pxd -> build/lib.linux-armv7l-cpython-311/denovonear 2023-09-11T10:50:17,814 running build_ext 2023-09-11T10:50:17,821 building 'denovonear.weights' extension 2023-09-11T10:50:17,822 creating build/temp.linux-armv7l-cpython-311 2023-09-11T10:50:17,823 creating build/temp.linux-armv7l-cpython-311/denovonear 2023-09-11T10:50:17,824 creating build/temp.linux-armv7l-cpython-311/src 2023-09-11T10:50:17,824 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -I/usr/include/python3.11 -c denovonear/weights.cpp -o build/temp.linux-armv7l-cpython-311/denovonear/weights.o -std=c++11 2023-09-11T10:50:28,365 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -I/usr/include/python3.11 -c src/simulate.cpp -o build/temp.linux-armv7l-cpython-311/src/simulate.o -std=c++11 2023-09-11T10:50:30,201 In file included from /usr/include/c++/12/bits/stl_algo.h:60, 2023-09-11T10:50:30,202 from /usr/include/c++/12/algorithm:61, 2023-09-11T10:50:30,203 from src/simulate.cpp:2: 2023-09-11T10:50:30,203 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2023-09-11T10:50:30,204 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:50:30,205 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2023-09-11T10:50:30,205 | ^~~~~~~~~~~~~ 2023-09-11T10:50:30,244 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2023-09-11T10:50:30,245 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:50:30,245 1802 | __insertion_sort(_RandomAccessIterator __first, 2023-09-11T10:50:30,246 | ^~~~~~~~~~~~~~~~ 2023-09-11T10:50:30,247 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:50:30,298 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2023-09-11T10:50:30,299 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:50:30,300 1908 | __introsort_loop(_RandomAccessIterator __first, 2023-09-11T10:50:30,300 | ^~~~~~~~~~~~~~~~ 2023-09-11T10:50:30,301 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:50:30,301 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:50:30,302 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-11T10:50:30,303 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-11T10:50:30,564 In file included from /usr/include/c++/12/vector:70, 2023-09-11T10:50:30,565 from src/simulate.cpp:4: 2023-09-11T10:50:30,565 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-11T10:50:30,566 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-11T10:50:30,566 439 | vector<_Tp, _Alloc>:: 2023-09-11T10:50:30,567 | ^~~~~~~~~~~~~~~~~~~ 2023-09-11T10:50:30,662 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-11T10:50:30,663 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-11T10:50:30,663 inlined from ‘std::vector _simulate_distribution(Chooser&, int, int)’ at src/simulate.cpp:96:33: 2023-09-11T10:50:30,664 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:50:30,664 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-11T10:50:30,665 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-11T10:50:30,666 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2023-09-11T10:50:30,667 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2023-09-11T10:50:30,667 inlined from ‘std::vector _simulate_distribution(Chooser&, int, int)’ at src/simulate.cpp:101:14: 2023-09-11T10:50:30,668 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:50:30,668 1937 | std::__introsort_loop(__first, __last, 2023-09-11T10:50:30,669 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-09-11T10:50:30,670 1938 | std::__lg(__last - __first) * 2, 2023-09-11T10:50:30,670 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-11T10:50:30,671 1939 | __comp); 2023-09-11T10:50:30,672 | ~~~~~~~ 2023-09-11T10:50:30,673 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2023-09-11T10:50:30,673 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-11T10:50:30,674 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2023-09-11T10:50:30,674 inlined from ‘std::vector _simulate_distribution(Chooser&, int, int)’ at src/simulate.cpp:101:14: 2023-09-11T10:50:30,674 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:50:30,675 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-11T10:50:30,675 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-11T10:50:30,676 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:50:30,676 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-11T10:50:30,677 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-11T10:50:31,197 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -I/usr/include/python3.11 -c src/weighted_choice.cpp -o build/temp.linux-armv7l-cpython-311/src/weighted_choice.o -std=c++11 2023-09-11T10:50:33,152 In file included from /usr/include/c++/12/vector:70, 2023-09-11T10:50:33,153 from /usr/include/c++/12/bits/random.h:34, 2023-09-11T10:50:33,153 from /usr/include/c++/12/random:49, 2023-09-11T10:50:33,154 from src/weighted_choice.cpp:1: 2023-09-11T10:50:33,155 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-11T10:50:33,156 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-11T10:50:33,156 439 | vector<_Tp, _Alloc>:: 2023-09-11T10:50:33,157 | ^~~~~~~~~~~~~~~~~~~ 2023-09-11T10:50:33,268 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const AlleleChoice&}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2023-09-11T10:50:33,269 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-11T10:50:33,465 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2023-09-11T10:50:33,466 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-11T10:50:33,600 In file included from /usr/include/c++/12/vector:64: 2023-09-11T10:50:33,601 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-11T10:50:33,602 inlined from ‘void Chooser::add_choice(int, double, std::string, std::string, int)’ at src/weighted_choice.cpp:40:25: 2023-09-11T10:50:33,602 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:50:33,604 1287 | _M_realloc_insert(end(), __x); 2023-09-11T10:50:33,604 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-11T10:50:33,605 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator]’, 2023-09-11T10:50:33,605 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlleleChoice; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-11T10:50:33,606 inlined from ‘void Chooser::add_choice(int, double, std::string, std::string, int)’ at src/weighted_choice.cpp:42:20: 2023-09-11T10:50:33,606 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:50:33,607 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-11T10:50:33,607 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-11T10:50:33,692 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-11T10:50:33,692 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-11T10:50:33,693 439 | vector<_Tp, _Alloc>:: 2023-09-11T10:50:33,694 | ^~~~~~~~~~~~~~~~~~~ 2023-09-11T10:50:33,754 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-11T10:50:33,755 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-11T10:50:33,756 inlined from ‘void Chooser::append(Chooser)’ at src/weighted_choice.cpp:80:29: 2023-09-11T10:50:33,757 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:50:33,757 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-11T10:50:33,758 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-11T10:50:33,759 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = AlleleChoice; _Alloc = std::allocator]’, 2023-09-11T10:50:33,760 inlined from ‘void Chooser::append(Chooser)’ at src/weighted_choice.cpp:81:24: 2023-09-11T10:50:33,760 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:50:33,761 1287 | _M_realloc_insert(end(), __x); 2023-09-11T10:50:33,762 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-11T10:50:34,213 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/denovonear/weights.o build/temp.linux-armv7l-cpython-311/src/simulate.o build/temp.linux-armv7l-cpython-311/src/weighted_choice.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/denovonear/weights.cpython-311-arm-linux-gnueabihf.so 2023-09-11T10:50:34,492 building 'denovonear.transcript' extension 2023-09-11T10:50:34,492 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -I/usr/include/python3.11 -c denovonear/transcript.cpp -o build/temp.linux-armv7l-cpython-311/denovonear/transcript.o -std=c++11 2023-09-11T10:51:05,923 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -I/usr/include/python3.11 -c src/tx.cpp -o build/temp.linux-armv7l-cpython-311/src/tx.o -std=c++11 2023-09-11T10:51:15,517 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/denovonear/transcript.o build/temp.linux-armv7l-cpython-311/src/tx.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/denovonear/transcript.cpython-311-arm-linux-gnueabihf.so 2023-09-11T10:51:15,862 building 'denovonear.site_specific_rates' extension 2023-09-11T10:51:15,863 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -I/usr/include/python3.11 -c denovonear/site_specific_rates.cpp -o build/temp.linux-armv7l-cpython-311/denovonear/site_specific_rates.o -std=c++11 2023-09-11T10:51:31,432 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -I/usr/include/python3.11 -c src/site_rates.cpp -o build/temp.linux-armv7l-cpython-311/src/site_rates.o -std=c++11 2023-09-11T10:51:38,091 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -I/usr/include/python3.11 -c src/tx.cpp -o build/temp.linux-armv7l-cpython-311/src/tx.o -std=c++11 2023-09-11T10:51:47,688 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -I/usr/include/python3.11 -c src/weighted_choice.cpp -o build/temp.linux-armv7l-cpython-311/src/weighted_choice.o -std=c++11 2023-09-11T10:51:49,644 In file included from /usr/include/c++/12/vector:70, 2023-09-11T10:51:49,644 from /usr/include/c++/12/bits/random.h:34, 2023-09-11T10:51:49,645 from /usr/include/c++/12/random:49, 2023-09-11T10:51:49,646 from src/weighted_choice.cpp:1: 2023-09-11T10:51:49,647 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-11T10:51:49,648 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-11T10:51:49,648 439 | vector<_Tp, _Alloc>:: 2023-09-11T10:51:49,649 | ^~~~~~~~~~~~~~~~~~~ 2023-09-11T10:51:49,757 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const AlleleChoice&}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2023-09-11T10:51:49,758 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-11T10:51:49,952 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2023-09-11T10:51:49,953 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-11T10:51:50,087 In file included from /usr/include/c++/12/vector:64: 2023-09-11T10:51:50,088 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-11T10:51:50,088 inlined from ‘void Chooser::add_choice(int, double, std::string, std::string, int)’ at src/weighted_choice.cpp:40:25: 2023-09-11T10:51:50,089 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:51:50,090 1287 | _M_realloc_insert(end(), __x); 2023-09-11T10:51:50,091 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-11T10:51:50,092 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator]’, 2023-09-11T10:51:50,092 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = AlleleChoice; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-11T10:51:50,093 inlined from ‘void Chooser::add_choice(int, double, std::string, std::string, int)’ at src/weighted_choice.cpp:42:20: 2023-09-11T10:51:50,093 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:51:50,094 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-11T10:51:50,094 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-11T10:51:50,177 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-11T10:51:50,178 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-11T10:51:50,179 439 | vector<_Tp, _Alloc>:: 2023-09-11T10:51:50,180 | ^~~~~~~~~~~~~~~~~~~ 2023-09-11T10:51:50,240 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-11T10:51:50,241 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-11T10:51:50,241 inlined from ‘void Chooser::append(Chooser)’ at src/weighted_choice.cpp:80:29: 2023-09-11T10:51:50,242 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:51:50,243 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-11T10:51:50,244 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-11T10:51:50,245 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = AlleleChoice; _Alloc = std::allocator]’, 2023-09-11T10:51:50,245 inlined from ‘void Chooser::append(Chooser)’ at src/weighted_choice.cpp:81:24: 2023-09-11T10:51:50,246 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:51:50,247 1287 | _M_realloc_insert(end(), __x); 2023-09-11T10:51:50,248 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-11T10:51:50,686 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/denovonear/site_specific_rates.o build/temp.linux-armv7l-cpython-311/src/site_rates.o build/temp.linux-armv7l-cpython-311/src/tx.o build/temp.linux-armv7l-cpython-311/src/weighted_choice.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/denovonear/site_specific_rates.cpython-311-arm-linux-gnueabihf.so 2023-09-11T10:51:51,138 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-11T10:51:51,139 !! 2023-09-11T10:51:51,140 ******************************************************************************** 2023-09-11T10:51:51,141 Please avoid running ``setup.py`` directly. 2023-09-11T10:51:51,141 Instead, use pypa/build, pypa/installer or other 2023-09-11T10:51:51,141 standards-based tools. 2023-09-11T10:51:51,142 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-11T10:51:51,143 ******************************************************************************** 2023-09-11T10:51:51,144 !! 2023-09-11T10:51:51,144 self.initialize_options() 2023-09-11T10:51:51,167 installing to build/bdist.linux-armv7l/wheel 2023-09-11T10:51:51,168 running install 2023-09-11T10:51:51,192 running install_lib 2023-09-11T10:51:51,217 creating build/bdist.linux-armv7l 2023-09-11T10:51:51,217 creating build/bdist.linux-armv7l/wheel 2023-09-11T10:51:51,219 creating build/bdist.linux-armv7l/wheel/denovonear 2023-09-11T10:51:51,221 copying build/lib.linux-armv7l-cpython-311/denovonear/log_transform_rates.py -> build/bdist.linux-armv7l/wheel/denovonear 2023-09-11T10:51:51,223 copying build/lib.linux-armv7l-cpython-311/denovonear/site_specific_rates.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear 2023-09-11T10:51:51,269 copying build/lib.linux-armv7l-cpython-311/denovonear/cluster_test.py -> build/bdist.linux-armv7l/wheel/denovonear 2023-09-11T10:51:51,271 copying build/lib.linux-armv7l-cpython-311/denovonear/weights.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear 2023-09-11T10:51:51,288 copying build/lib.linux-armv7l-cpython-311/denovonear/load_mutation_rates.py -> build/bdist.linux-armv7l/wheel/denovonear 2023-09-11T10:51:51,290 copying build/lib.linux-armv7l-cpython-311/denovonear/load_de_novos.py -> build/bdist.linux-armv7l/wheel/denovonear 2023-09-11T10:51:51,291 copying build/lib.linux-armv7l-cpython-311/denovonear/__init__.py -> build/bdist.linux-armv7l/wheel/denovonear 2023-09-11T10:51:51,293 copying build/lib.linux-armv7l-cpython-311/denovonear/load_gene.py -> build/bdist.linux-armv7l/wheel/denovonear 2023-09-11T10:51:51,295 copying build/lib.linux-armv7l-cpython-311/denovonear/simulate.py -> build/bdist.linux-armv7l/wheel/denovonear 2023-09-11T10:51:51,297 copying build/lib.linux-armv7l-cpython-311/denovonear/ensembl_cache.py -> build/bdist.linux-armv7l/wheel/denovonear 2023-09-11T10:51:51,299 copying build/lib.linux-armv7l-cpython-311/denovonear/frameshift_rate.py -> build/bdist.linux-armv7l/wheel/denovonear 2023-09-11T10:51:51,301 creating build/bdist.linux-armv7l/wheel/denovonear/data 2023-09-11T10:51:51,302 copying build/lib.linux-armv7l-cpython-311/denovonear/data/rates.txt -> build/bdist.linux-armv7l/wheel/denovonear/data 2023-09-11T10:51:51,305 copying build/lib.linux-armv7l-cpython-311/denovonear/weights.pxd -> build/bdist.linux-armv7l/wheel/denovonear 2023-09-11T10:51:51,306 copying build/lib.linux-armv7l-cpython-311/denovonear/transcript.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear 2023-09-11T10:51:51,348 copying build/lib.linux-armv7l-cpython-311/denovonear/__main__.py -> build/bdist.linux-armv7l/wheel/denovonear 2023-09-11T10:51:51,350 copying build/lib.linux-armv7l-cpython-311/denovonear/ensembl_requester.py -> build/bdist.linux-armv7l/wheel/denovonear 2023-09-11T10:51:51,352 running install_egg_info 2023-09-11T10:51:51,415 running egg_info 2023-09-11T10:51:51,440 writing denovonear.egg-info/PKG-INFO 2023-09-11T10:51:51,443 writing dependency_links to denovonear.egg-info/dependency_links.txt 2023-09-11T10:51:51,445 writing entry points to denovonear.egg-info/entry_points.txt 2023-09-11T10:51:51,446 writing requirements to denovonear.egg-info/requires.txt 2023-09-11T10:51:51,447 writing top-level names to denovonear.egg-info/top_level.txt 2023-09-11T10:51:51,481 reading manifest file 'denovonear.egg-info/SOURCES.txt' 2023-09-11T10:51:51,485 reading manifest template 'MANIFEST.in' 2023-09-11T10:51:51,495 writing manifest file 'denovonear.egg-info/SOURCES.txt' 2023-09-11T10:51:51,496 Copying denovonear.egg-info to build/bdist.linux-armv7l/wheel/denovonear-0.7.0-py3.11.egg-info 2023-09-11T10:51:51,508 running install_scripts 2023-09-11T10:51:51,564 creating build/bdist.linux-armv7l/wheel/denovonear-0.7.0.dist-info/WHEEL 2023-09-11T10:51:51,566 creating '/tmp/pip-wheel-awtap4et/denovonear-0.7.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-11T10:51:51,568 adding 'denovonear/__init__.py' 2023-09-11T10:51:51,570 adding 'denovonear/__main__.py' 2023-09-11T10:51:51,572 adding 'denovonear/cluster_test.py' 2023-09-11T10:51:51,573 adding 'denovonear/ensembl_cache.py' 2023-09-11T10:51:51,576 adding 'denovonear/ensembl_requester.py' 2023-09-11T10:51:51,577 adding 'denovonear/frameshift_rate.py' 2023-09-11T10:51:51,578 adding 'denovonear/load_de_novos.py' 2023-09-11T10:51:51,580 adding 'denovonear/load_gene.py' 2023-09-11T10:51:51,581 adding 'denovonear/load_mutation_rates.py' 2023-09-11T10:51:51,583 adding 'denovonear/log_transform_rates.py' 2023-09-11T10:51:51,584 adding 'denovonear/simulate.py' 2023-09-11T10:51:52,124 adding 'denovonear/site_specific_rates.cpython-311-arm-linux-gnueabihf.so' 2023-09-11T10:51:52,618 adding 'denovonear/transcript.cpython-311-arm-linux-gnueabihf.so' 2023-09-11T10:51:52,846 adding 'denovonear/weights.cpython-311-arm-linux-gnueabihf.so' 2023-09-11T10:51:52,855 adding 'denovonear/weights.pxd' 2023-09-11T10:51:52,857 adding 'denovonear/data/rates.txt' 2023-09-11T10:51:52,859 adding 'denovonear-0.7.0.dist-info/METADATA' 2023-09-11T10:51:52,860 adding 'denovonear-0.7.0.dist-info/WHEEL' 2023-09-11T10:51:52,861 adding 'denovonear-0.7.0.dist-info/entry_points.txt' 2023-09-11T10:51:52,862 adding 'denovonear-0.7.0.dist-info/top_level.txt' 2023-09-11T10:51:52,862 adding 'denovonear-0.7.0.dist-info/RECORD' 2023-09-11T10:51:52,891 removing build/bdist.linux-armv7l/wheel 2023-09-11T10:51:53,043 Building wheel for denovonear (setup.py): finished with status 'done' 2023-09-11T10:51:53,075 Created wheel for denovonear: filename=denovonear-0.7.0-cp311-cp311-linux_armv7l.whl size=2412243 sha256=524a9aa0f5878e7c79264daf30aecea041083c93272699aef9e17a7095829cca 2023-09-11T10:51:53,076 Stored in directory: /tmp/pip-ephem-wheel-cache-8heht_gp/wheels/d1/65/65/7dcaa70bca0ae057aed8dd8b5e584e5812e64f10c39e1ea647 2023-09-11T10:51:53,087 Successfully built denovonear 2023-09-11T10:51:53,144 Removed build tracker: '/tmp/pip-build-tracker-l9vksxf7'