2023-09-12T09:04:04,335 Created temporary directory: /tmp/pip-build-tracker-cabx8z6s
2023-09-12T09:04:04,336 Initialized build tracking at /tmp/pip-build-tracker-cabx8z6s
2023-09-12T09:04:04,337 Created build tracker: /tmp/pip-build-tracker-cabx8z6s
2023-09-12T09:04:04,337 Entered build tracker: /tmp/pip-build-tracker-cabx8z6s
2023-09-12T09:04:04,338 Created temporary directory: /tmp/pip-wheel-nwn9rtra
2023-09-12T09:04:04,341 Created temporary directory: /tmp/pip-ephem-wheel-cache-038yluqx
2023-09-12T09:04:04,365 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-12T09:04:04,369 2 location(s) to search for versions of segmentation-phenix:
2023-09-12T09:04:04,369 * https://pypi.org/simple/segmentation-phenix/
2023-09-12T09:04:04,369 * https://www.piwheels.org/simple/segmentation-phenix/
2023-09-12T09:04:04,370 Fetching project page and analyzing links: https://pypi.org/simple/segmentation-phenix/
2023-09-12T09:04:04,371 Getting page https://pypi.org/simple/segmentation-phenix/
2023-09-12T09:04:04,373 Found index url https://pypi.org/simple/
2023-09-12T09:04:04,516 Fetched page https://pypi.org/simple/segmentation-phenix/ as application/vnd.pypi.simple.v1+json
2023-09-12T09:04:04,519   Found link https://files.pythonhosted.org/packages/30/6c/d50d13cc8a0f6e83dfcf9ee1759ba9932bd77b4e9a9d78ba0f507744ac37/segmentation_phenix-0.1.0.tar.gz (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.0
2023-09-12T09:04:04,519   Found link https://files.pythonhosted.org/packages/04/55/6543f51023a5dcad42a9b10db8073a826ec9fa0cf14cdca970836d65e317/segmentation_phenix-0.1.1.tar.gz (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.1
2023-09-12T09:04:04,520   Found link https://files.pythonhosted.org/packages/74/d8/f0734acbe90d53afdc8d297676992794fe5c0042e84aef81f9e886fe2135/segmentation_phenix-0.1.2.tar.gz (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.2
2023-09-12T09:04:04,521   Found link https://files.pythonhosted.org/packages/5a/a4/8bfee07573bd5378121f60da7a3936010cf0e75feee6c7f3eb7a2dd7b196/segmentation_phenix-0.1.3.tar.gz (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.3
2023-09-12T09:04:04,521   Found link https://files.pythonhosted.org/packages/af/d6/b3e45deb822008b224bfc9d6c25c9794bf2b394b00d9d955e2ac2df55b58/segmentation_phenix-0.1.4.tar.gz (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.4
2023-09-12T09:04:04,522   Found link https://files.pythonhosted.org/packages/94/64/afd02ce8113aa913e7ea13937756b9e66fdf1f9225b743acd83a6c4bac18/segmentation_phenix-0.1.5.tar.gz (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.5
2023-09-12T09:04:04,523   Found link https://files.pythonhosted.org/packages/5c/7d/752c9955ea2135add62b018cf97e5ad8facde379b8b08e14fc2a41c5db98/segmentation_phenix-0.1.6.tar.gz (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.6
2023-09-12T09:04:04,524   Found link https://files.pythonhosted.org/packages/4f/fc/2aaf44d9abeb1b31cef9507fca044750d3bca9621c7c80c4ec29548bf3b6/segmentation_phenix-0.1.7.tar.gz (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.7
2023-09-12T09:04:04,524 Fetching project page and analyzing links: https://www.piwheels.org/simple/segmentation-phenix/
2023-09-12T09:04:04,525 Getting page https://www.piwheels.org/simple/segmentation-phenix/
2023-09-12T09:04:04,526 Found index url https://www.piwheels.org/simple/
2023-09-12T09:04:04,839 Fetched page https://www.piwheels.org/simple/segmentation-phenix/ as text/html
2023-09-12T09:04:04,841 Skipping link: not a file: https://www.piwheels.org/simple/segmentation-phenix/
2023-09-12T09:04:04,842 Skipping link: not a file: https://pypi.org/simple/segmentation-phenix/
2023-09-12T09:04:04,869 Given no hashes to check 1 links for project 'segmentation-phenix': discarding no candidates
2023-09-12T09:04:04,896 Collecting segmentation-phenix==0.1.7
2023-09-12T09:04:04,899   Created temporary directory: /tmp/pip-unpack-wchunn6l
2023-09-12T09:04:05,123   Downloading segmentation_phenix-0.1.7.tar.gz (17 kB)
2023-09-12T09:04:05,161   Added segmentation-phenix==0.1.7 from https://files.pythonhosted.org/packages/4f/fc/2aaf44d9abeb1b31cef9507fca044750d3bca9621c7c80c4ec29548bf3b6/segmentation_phenix-0.1.7.tar.gz to build tracker '/tmp/pip-build-tracker-cabx8z6s'
2023-09-12T09:04:05,162   Running setup.py (path:/tmp/pip-wheel-nwn9rtra/segmentation-phenix_2f5968fa34544015b152dc02224d1e4b/setup.py) egg_info for package segmentation-phenix
2023-09-12T09:04:05,164   Created temporary directory: /tmp/pip-pip-egg-info-f3_re_xw
2023-09-12T09:04:05,164   Preparing metadata (setup.py): started
2023-09-12T09:04:05,165   Running command python setup.py egg_info
2023-09-12T09:04:05,580   Traceback (most recent call last):
2023-09-12T09:04:05,580     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 23, in <module>
2023-09-12T09:04:05,581       from . import multiarray
2023-09-12T09:04:05,582     File "/usr/local/lib/python3.11/dist-packages/numpy/core/multiarray.py", line 10, in <module>
2023-09-12T09:04:05,582       from . import overrides
2023-09-12T09:04:05,582     File "/usr/local/lib/python3.11/dist-packages/numpy/core/overrides.py", line 8, in <module>
2023-09-12T09:04:05,583       from numpy.core._multiarray_umath import (
2023-09-12T09:04:05,584   ImportError: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-12T09:04:05,585   During handling of the above exception, another exception occurred:

2023-09-12T09:04:05,587   Traceback (most recent call last):
2023-09-12T09:04:05,588     File "<string>", line 2, in <module>
2023-09-12T09:04:05,588     File "<pip-setuptools-caller>", line 34, in <module>
2023-09-12T09:04:05,589     File "/tmp/pip-wheel-nwn9rtra/segmentation-phenix_2f5968fa34544015b152dc02224d1e4b/setup.py", line 3, in <module>
2023-09-12T09:04:05,590       import numpy as np
2023-09-12T09:04:05,591     File "/usr/local/lib/python3.11/dist-packages/numpy/__init__.py", line 139, in <module>
2023-09-12T09:04:05,591       from . import core
2023-09-12T09:04:05,592     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 49, in <module>
2023-09-12T09:04:05,593       raise ImportError(msg)
2023-09-12T09:04:05,594   ImportError:

2023-09-12T09:04:05,596   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

2023-09-12T09:04:05,598   Importing the numpy C-extensions failed. This error can happen for
2023-09-12T09:04:05,598   many reasons, often due to issues with your setup or how NumPy was
2023-09-12T09:04:05,599   installed.

2023-09-12T09:04:05,601   We have compiled some common reasons and troubleshooting tips at:

2023-09-12T09:04:05,603       https://numpy.org/devdocs/user/troubleshooting-importerror.html

2023-09-12T09:04:05,605   Please note and check the following:

2023-09-12T09:04:05,607     * The Python version is: Python3.11 from "/usr/bin/python3"
2023-09-12T09:04:05,608     * The NumPy version is: "1.25.2"

2023-09-12T09:04:05,610   and make sure that they are the versions you expect.
2023-09-12T09:04:05,610   Please carefully study the documentation linked above for further help.

2023-09-12T09:04:05,612   Original error was: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-12T09:04:05,656   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-09-12T09:04:05,669   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-09-12T09:04:05,669   exec(compile('"'"''"'"''"'"'
2023-09-12T09:04:05,669   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-12T09:04:05,669   #
2023-09-12T09:04:05,669   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-12T09:04:05,669   #   import from `distutils.core` to work with newer packaging standards.
2023-09-12T09:04:05,669   # - It provides a clear error message when setuptools is not installed.
2023-09-12T09:04:05,669   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-12T09:04:05,669   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-12T09:04:05,669   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-12T09:04:05,669   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-12T09:04:05,669   import os, sys, tokenize
2023-09-12T09:04:05,669   
2023-09-12T09:04:05,669   try:
2023-09-12T09:04:05,669       import setuptools
2023-09-12T09:04:05,669   except ImportError as error:
2023-09-12T09:04:05,669       print(
2023-09-12T09:04:05,669           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-12T09:04:05,669           "the build environment.",
2023-09-12T09:04:05,669           file=sys.stderr,
2023-09-12T09:04:05,669       )
2023-09-12T09:04:05,669       sys.exit(1)
2023-09-12T09:04:05,669   
2023-09-12T09:04:05,669   __file__ = %r
2023-09-12T09:04:05,669   sys.argv[0] = __file__
2023-09-12T09:04:05,669   
2023-09-12T09:04:05,669   if os.path.exists(__file__):
2023-09-12T09:04:05,669       filename = __file__
2023-09-12T09:04:05,669       with tokenize.open(__file__) as f:
2023-09-12T09:04:05,669           setup_py_code = f.read()
2023-09-12T09:04:05,669   else:
2023-09-12T09:04:05,669       filename = "<auto-generated setuptools caller>"
2023-09-12T09:04:05,669       setup_py_code = "from setuptools import setup; setup()"
2023-09-12T09:04:05,669   
2023-09-12T09:04:05,669   exec(compile(setup_py_code, filename, "exec"))
2023-09-12T09:04:05,669   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-nwn9rtra/segmentation-phenix_2f5968fa34544015b152dc02224d1e4b/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-f3_re_xw[/]
2023-09-12T09:04:05,670   [bold magenta]cwd[/]: /tmp/pip-wheel-nwn9rtra/segmentation-phenix_2f5968fa34544015b152dc02224d1e4b/
2023-09-12T09:04:05,671   Preparing metadata (setup.py): finished with status 'error'
2023-09-12T09:04:05,672 ERROR: [present-rich] metadata generation failed
2023-09-12T09:04:05,677 Exception information:
2023-09-12T09:04:05,677 Traceback (most recent call last):
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-09-12T09:04:05,677     call_subprocess(
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-09-12T09:04:05,677     raise error
2023-09-12T09:04:05,677 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-09-12T09:04:05,677 
2023-09-12T09:04:05,677 The above exception was the direct cause of the following exception:
2023-09-12T09:04:05,677 
2023-09-12T09:04:05,677 Traceback (most recent call last):
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-12T09:04:05,677     status = run_func(*args)
2023-09-12T09:04:05,677              ^^^^^^^^^^^^^^^
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-12T09:04:05,677     return func(self, options, args)
2023-09-12T09:04:05,677            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-09-12T09:04:05,677     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-09-12T09:04:05,677                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-09-12T09:04:05,677     result = self._result = resolver.resolve(
2023-09-12T09:04:05,677                             ^^^^^^^^^^^^^^^^^
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-09-12T09:04:05,677     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-09-12T09:04:05,677             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-09-12T09:04:05,677     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-09-12T09:04:05,677     if not criterion.candidates:
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-09-12T09:04:05,677     return bool(self._sequence)
2023-09-12T09:04:05,677            ^^^^^^^^^^^^^^^^^^^^
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-09-12T09:04:05,677     return any(self)
2023-09-12T09:04:05,677            ^^^^^^^^^
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-09-12T09:04:05,677     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-09-12T09:04:05,677            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-09-12T09:04:05,677     candidate = func()
2023-09-12T09:04:05,677                 ^^^^^^
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-09-12T09:04:05,677     self._link_candidate_cache[link] = LinkCandidate(
2023-09-12T09:04:05,677                                        ^^^^^^^^^^^^^^
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-09-12T09:04:05,677     super().__init__(
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-09-12T09:04:05,677     self.dist = self._prepare()
2023-09-12T09:04:05,677                 ^^^^^^^^^^^^^^^
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-09-12T09:04:05,677     dist = self._prepare_distribution()
2023-09-12T09:04:05,677            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-09-12T09:04:05,677     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-09-12T09:04:05,677            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-09-12T09:04:05,677     return self._prepare_linked_requirement(req, parallel_builds)
2023-09-12T09:04:05,677            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-09-12T09:04:05,677     dist = _get_prepared_distribution(
2023-09-12T09:04:05,677            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-09-12T09:04:05,677     abstract_dist.prepare_distribution_metadata(
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-09-12T09:04:05,677     self.req.prepare_metadata()
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata
2023-09-12T09:04:05,677     self.metadata_directory = generate_metadata_legacy(
2023-09-12T09:04:05,677                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T09:04:05,677   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-09-12T09:04:05,677     raise MetadataGenerationFailed(package_details=details) from error
2023-09-12T09:04:05,677 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-09-12T09:04:05,691 Removed segmentation-phenix==0.1.7 from https://files.pythonhosted.org/packages/4f/fc/2aaf44d9abeb1b31cef9507fca044750d3bca9621c7c80c4ec29548bf3b6/segmentation_phenix-0.1.7.tar.gz from build tracker '/tmp/pip-build-tracker-cabx8z6s'
2023-09-12T09:04:05,692 Removed build tracker: '/tmp/pip-build-tracker-cabx8z6s'