2023-09-12T09:21:20,702 Created temporary directory: /tmp/pip-build-tracker-nx3m0ybg 2023-09-12T09:21:20,703 Initialized build tracking at /tmp/pip-build-tracker-nx3m0ybg 2023-09-12T09:21:20,703 Created build tracker: /tmp/pip-build-tracker-nx3m0ybg 2023-09-12T09:21:20,704 Entered build tracker: /tmp/pip-build-tracker-nx3m0ybg 2023-09-12T09:21:20,704 Created temporary directory: /tmp/pip-wheel-3ewhc2h7 2023-09-12T09:21:20,707 Created temporary directory: /tmp/pip-ephem-wheel-cache-hf1eme4g 2023-09-12T09:21:20,729 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-12T09:21:20,733 2 location(s) to search for versions of gff3tool: 2023-09-12T09:21:20,733 * https://pypi.org/simple/gff3tool/ 2023-09-12T09:21:20,733 * https://www.piwheels.org/simple/gff3tool/ 2023-09-12T09:21:20,734 Fetching project page and analyzing links: https://pypi.org/simple/gff3tool/ 2023-09-12T09:21:20,734 Getting page https://pypi.org/simple/gff3tool/ 2023-09-12T09:21:20,736 Found index url https://pypi.org/simple/ 2023-09-12T09:21:20,950 Fetched page https://pypi.org/simple/gff3tool/ as application/vnd.pypi.simple.v1+json 2023-09-12T09:21:20,953 Found link https://files.pythonhosted.org/packages/71/33/dac2be6f38dd40d4f914814e7afe2cc5391f1bfecc77439612284de537a1/gff3tool-1.1.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.1.0 2023-09-12T09:21:20,954 Found link https://files.pythonhosted.org/packages/a1/f1/6630128adac220623c28a5f5ed4e6cfa070589143a0b2151237c20923149/gff3tool-1.3.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.3.0 2023-09-12T09:21:20,955 Found link https://files.pythonhosted.org/packages/71/cb/9b9d73fd7171571b9ad063fa3a6aac684aeebc7e958a37e2423c690d5110/gff3tool-1.4.1.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.1 2023-09-12T09:21:20,955 Found link https://files.pythonhosted.org/packages/23/bb/0b7952dfc7fb8992e6d7349eb55cbbe51e6c0750d57e33c01de5be39da46/gff3tool-1.4.2.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.2 2023-09-12T09:21:20,956 Found link https://files.pythonhosted.org/packages/7c/79/b59b3e47735edfe2ac2a9334c8e2836d63c0899b51f9badc416ae07e8353/gff3tool-1.4.3.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.3 2023-09-12T09:21:20,957 Found link https://files.pythonhosted.org/packages/cf/33/8cd85764a601bf3a5e0116f8b457c308294ec9c25139aacade6e21860335/gff3tool-1.4.4.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.4 2023-09-12T09:21:20,957 Skipping link: No binaries permitted for gff3tool: https://files.pythonhosted.org/packages/2a/4c/a16d0aae5fa870fc7630eb0536042fd3e0494467efd9f27cea6090cdbbe0/gff3tool-1.4.5-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/gff3tool/) 2023-09-12T09:21:20,958 Found link https://files.pythonhosted.org/packages/f8/78/330f714b6e771d69079128a44f61830c9ce22969eaa3b176dafb94c48809/gff3tool-1.4.5.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.5 2023-09-12T09:21:20,958 Found link https://files.pythonhosted.org/packages/8a/82/0f528dc498d7fdfbd6b8a968ed1cfee43ffa55461e77830a22f606aea3bb/gff3tool-2.0.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.0 2023-09-12T09:21:20,959 Found link https://files.pythonhosted.org/packages/aa/b3/cecb768a048bf2e661f0e77bf3208ed8ef203acbd93107b1f00d7b57da1e/gff3tool-2.0.1.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.1 2023-09-12T09:21:20,960 Found link https://files.pythonhosted.org/packages/21/2e/7e77d34adec82b4d896c8959c7993534810f8bc43cc374e984e5635bbf94/gff3tool-2.0.3.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.3 2023-09-12T09:21:20,960 Found link https://files.pythonhosted.org/packages/7f/12/d177f42f6e3a73dae82fd5cc89e7404de121ab381e5454ca8da11110d88a/gff3tool-2.1.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.1.0 2023-09-12T09:21:20,961 Fetching project page and analyzing links: https://www.piwheels.org/simple/gff3tool/ 2023-09-12T09:21:20,962 Getting page https://www.piwheels.org/simple/gff3tool/ 2023-09-12T09:21:20,963 Found index url https://www.piwheels.org/simple/ 2023-09-12T09:21:31,515 Fetched page https://www.piwheels.org/simple/gff3tool/ as text/html 2023-09-12T09:21:31,537 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp39-cp39-linux_armv7l.whl#sha256=acb5d3cb45afefe5eab3c74db7b776dda5cf59ce38bb15cbde8edddd6079c343 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,538 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp39-cp39-linux_armv6l.whl#sha256=acb5d3cb45afefe5eab3c74db7b776dda5cf59ce38bb15cbde8edddd6079c343 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,539 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp37-cp37m-linux_armv7l.whl#sha256=cfe6edebe5cd63bcd5cd38e34377d8c34eb8fdc675d148da65e75d4399db5ff6 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,540 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp37-cp37m-linux_armv6l.whl#sha256=cfe6edebe5cd63bcd5cd38e34377d8c34eb8fdc675d148da65e75d4399db5ff6 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,541 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp35-cp35m-linux_armv7l.whl#sha256=5eef1c37d908cd2d30f368726348cf85a26dc4d95abc8131735de5c720d7975b (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,541 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp35-cp35m-linux_armv6l.whl#sha256=5eef1c37d908cd2d30f368726348cf85a26dc4d95abc8131735de5c720d7975b (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,542 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=66d9164d8245e216f080754a89df8cda4192f034e99a32532198ccf3c38f6faa (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,543 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=66d9164d8245e216f080754a89df8cda4192f034e99a32532198ccf3c38f6faa (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,544 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp37-cp37m-linux_armv7l.whl#sha256=79c3e33604c37bc449a60874dbc1520dde9140874fb47948d3a087eeec48f52f (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,546 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp37-cp37m-linux_armv6l.whl#sha256=79c3e33604c37bc449a60874dbc1520dde9140874fb47948d3a087eeec48f52f (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,547 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp35-cp35m-linux_armv7l.whl#sha256=ce80154080e74e3fb30b340e7a76661a4b8f3d78c6104490aa6da9c40fdc91d6 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,548 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp35-cp35m-linux_armv6l.whl#sha256=ce80154080e74e3fb30b340e7a76661a4b8f3d78c6104490aa6da9c40fdc91d6 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,549 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp39-cp39-linux_armv7l.whl#sha256=a89f1ece9e20b3183b0eba298b269f1c4b0109af60b409f5d3f7bc0be4914bfd (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,550 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp39-cp39-linux_armv6l.whl#sha256=a89f1ece9e20b3183b0eba298b269f1c4b0109af60b409f5d3f7bc0be4914bfd (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,551 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp35-cp35m-linux_armv7l.whl#sha256=baa47b3147a931daf4958a447f96979e4448707996cc9d60ac45ad3ebb8e9c1f (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,552 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp35-cp35m-linux_armv6l.whl#sha256=baa47b3147a931daf4958a447f96979e4448707996cc9d60ac45ad3ebb8e9c1f (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,553 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp34-cp34m-linux_armv7l.whl#sha256=fa519097d18d8d8239808e305f0bb0549b3dd93a72ed8d5ea6f45d785e6bef11 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,554 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp34-cp34m-linux_armv6l.whl#sha256=fa519097d18d8d8239808e305f0bb0549b3dd93a72ed8d5ea6f45d785e6bef11 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,554 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp37-cp37m-linux_armv6l.whl#sha256=88be7d8c71c322212fdc989a672f6e0f10ed299cb5615d7d34f70058a0d6f928 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,555 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp37-cp37m-linux_armv7l.whl#sha256=88be7d8c71c322212fdc989a672f6e0f10ed299cb5615d7d34f70058a0d6f928 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,556 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp311-cp311-linux_armv7l.whl#sha256=036c36c64ae995bbd9b6234e9f0b2fdaed36e2a4869fa2885c0fa449d01f6bd1 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,557 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp311-cp311-linux_armv6l.whl#sha256=036c36c64ae995bbd9b6234e9f0b2fdaed36e2a4869fa2885c0fa449d01f6bd1 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,558 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=7dbbba3501c691ddb06f2ace77ee9897d1e51e32f6e05430923d4a5e53b86174 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,559 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=7dbbba3501c691ddb06f2ace77ee9897d1e51e32f6e05430923d4a5e53b86174 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,560 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp35-cp35m-linux_armv7l.whl#sha256=a6d1a1bf91d08ad305f7476e9a3439e57749b4091c112cbf4f73569a4f711a68 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,561 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp35-cp35m-linux_armv6l.whl#sha256=a6d1a1bf91d08ad305f7476e9a3439e57749b4091c112cbf4f73569a4f711a68 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,561 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=0be9d0d0079481fcbd19198c4fba52c6703b11b043e14bc17cd9b7863857efde (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,562 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=0be9d0d0079481fcbd19198c4fba52c6703b11b043e14bc17cd9b7863857efde (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,563 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp34-cp34m-linux_armv6l.whl#sha256=a6197f7982794de21eb411313c8591f643ea19667efba72907a0fbafd47ca4e7 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,564 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp34-cp34m-linux_armv7l.whl#sha256=a6197f7982794de21eb411313c8591f643ea19667efba72907a0fbafd47ca4e7 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,565 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-1.3.0-py3-none-any.whl#sha256=f993f46b60c812a88426ea96ad2c23aa521aee04c8bdad4016e21d03d6186291 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,566 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-1.1.0-py3-none-any.whl#sha256=f5eefabf7e1b27382cef033e939fd956121ebf02ae4e7085b83ade5f98c69d90 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-12T09:21:31,567 Skipping link: not a file: https://www.piwheels.org/simple/gff3tool/ 2023-09-12T09:21:31,567 Skipping link: not a file: https://pypi.org/simple/gff3tool/ 2023-09-12T09:21:31,599 Given no hashes to check 1 links for project 'gff3tool': discarding no candidates 2023-09-12T09:21:31,627 Collecting gff3tool==2.0.1 2023-09-12T09:21:31,631 Created temporary directory: /tmp/pip-unpack-c1rszppk 2023-09-12T09:21:31,862 Downloading gff3tool-2.0.1.tar.gz (79 kB) 2023-09-12T09:21:32,013 Added gff3tool==2.0.1 from https://files.pythonhosted.org/packages/aa/b3/cecb768a048bf2e661f0e77bf3208ed8ef203acbd93107b1f00d7b57da1e/gff3tool-2.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-nx3m0ybg' 2023-09-12T09:21:32,015 Running setup.py (path:/tmp/pip-wheel-3ewhc2h7/gff3tool_bdb232044fbf4836969eb90342db9131/setup.py) egg_info for package gff3tool 2023-09-12T09:21:32,015 Created temporary directory: /tmp/pip-pip-egg-info-9rh4i2od 2023-09-12T09:21:32,016 Preparing metadata (setup.py): started 2023-09-12T09:21:32,017 Running command python setup.py egg_info 2023-09-12T09:21:32,789 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-12T09:21:32,789 !! 2023-09-12T09:21:32,791 ******************************************************************************** 2023-09-12T09:21:32,791 Usage of dash-separated 'dist-dir' will not be supported in future 2023-09-12T09:21:32,792 versions. Please use the underscore name 'dist_dir' instead. 2023-09-12T09:21:32,793 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-12T09:21:32,793 or your builds will no longer be supported. 2023-09-12T09:21:32,794 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-12T09:21:32,795 ******************************************************************************** 2023-09-12T09:21:32,796 !! 2023-09-12T09:21:32,797 opt = self.warn_dash_deprecation(opt, section) 2023-09-12T09:21:33,103 running egg_info 2023-09-12T09:21:33,104 creating /tmp/pip-pip-egg-info-9rh4i2od/gff3tool.egg-info 2023-09-12T09:21:33,128 writing /tmp/pip-pip-egg-info-9rh4i2od/gff3tool.egg-info/PKG-INFO 2023-09-12T09:21:33,132 writing dependency_links to /tmp/pip-pip-egg-info-9rh4i2od/gff3tool.egg-info/dependency_links.txt 2023-09-12T09:21:33,133 writing entry points to /tmp/pip-pip-egg-info-9rh4i2od/gff3tool.egg-info/entry_points.txt 2023-09-12T09:21:33,135 writing top-level names to /tmp/pip-pip-egg-info-9rh4i2od/gff3tool.egg-info/top_level.txt 2023-09-12T09:21:33,136 writing manifest file '/tmp/pip-pip-egg-info-9rh4i2od/gff3tool.egg-info/SOURCES.txt' 2023-09-12T09:21:33,195 reading manifest file '/tmp/pip-pip-egg-info-9rh4i2od/gff3tool.egg-info/SOURCES.txt' 2023-09-12T09:21:33,196 reading manifest template 'MANIFEST.in' 2023-09-12T09:21:33,204 writing manifest file '/tmp/pip-pip-egg-info-9rh4i2od/gff3tool.egg-info/SOURCES.txt' 2023-09-12T09:21:33,321 Preparing metadata (setup.py): finished with status 'done' 2023-09-12T09:21:33,325 Source in /tmp/pip-wheel-3ewhc2h7/gff3tool_bdb232044fbf4836969eb90342db9131 has version 2.0.1, which satisfies requirement gff3tool==2.0.1 from https://files.pythonhosted.org/packages/aa/b3/cecb768a048bf2e661f0e77bf3208ed8ef203acbd93107b1f00d7b57da1e/gff3tool-2.0.1.tar.gz 2023-09-12T09:21:33,325 Removed gff3tool==2.0.1 from https://files.pythonhosted.org/packages/aa/b3/cecb768a048bf2e661f0e77bf3208ed8ef203acbd93107b1f00d7b57da1e/gff3tool-2.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-nx3m0ybg' 2023-09-12T09:21:33,330 Created temporary directory: /tmp/pip-unpack-dq61axfx 2023-09-12T09:21:33,331 Created temporary directory: /tmp/pip-unpack-vdd662xe 2023-09-12T09:21:33,334 Building wheels for collected packages: gff3tool 2023-09-12T09:21:33,338 Created temporary directory: /tmp/pip-wheel-04jobx2n 2023-09-12T09:21:33,338 Building wheel for gff3tool (setup.py): started 2023-09-12T09:21:33,340 Destination directory: /tmp/pip-wheel-04jobx2n 2023-09-12T09:21:33,340 Running command python setup.py bdist_wheel 2023-09-12T09:21:34,079 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-12T09:21:34,080 !! 2023-09-12T09:21:34,081 ******************************************************************************** 2023-09-12T09:21:34,081 Usage of dash-separated 'dist-dir' will not be supported in future 2023-09-12T09:21:34,082 versions. Please use the underscore name 'dist_dir' instead. 2023-09-12T09:21:34,083 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-12T09:21:34,083 or your builds will no longer be supported. 2023-09-12T09:21:34,084 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-12T09:21:34,084 ******************************************************************************** 2023-09-12T09:21:34,086 !! 2023-09-12T09:21:34,086 opt = self.warn_dash_deprecation(opt, section) 2023-09-12T09:21:34,351 running bdist_wheel 2023-09-12T09:21:34,421 running build 2023-09-12T09:22:07,881 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-12T09:22:07,882 !! 2023-09-12T09:22:07,883 ******************************************************************************** 2023-09-12T09:22:07,884 Please avoid running ``setup.py`` directly. 2023-09-12T09:22:07,884 Instead, use pypa/build, pypa/installer or other 2023-09-12T09:22:07,885 standards-based tools. 2023-09-12T09:22:07,886 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-12T09:22:07,887 ******************************************************************************** 2023-09-12T09:22:07,888 !! 2023-09-12T09:22:07,889 self.initialize_options() 2023-09-12T09:22:07,908 installing to build/bdist.linux-armv7l/wheel 2023-09-12T09:22:07,909 running install 2023-09-12T09:22:07,932 running install_lib 2023-09-12T09:22:07,955 running build_py 2023-09-12T09:22:07,982 creating build 2023-09-12T09:22:07,983 creating build/lib 2023-09-12T09:22:07,984 creating build/lib/gff3tool 2023-09-12T09:22:07,985 copying gff3tool/__init__.py -> build/lib/gff3tool 2023-09-12T09:22:07,987 creating build/lib/gff3tool/lib 2023-09-12T09:22:07,988 copying gff3tool/lib/replace_OGS.py -> build/lib/gff3tool/lib 2023-09-12T09:22:07,991 copying gff3tool/lib/__init__.py -> build/lib/gff3tool/lib 2023-09-12T09:22:07,993 copying gff3tool/lib/id_processor.py -> build/lib/gff3tool/lib 2023-09-12T09:22:07,995 copying gff3tool/lib/utils.py -> build/lib/gff3tool/lib 2023-09-12T09:22:07,997 copying gff3tool/lib/gff3_ID_generator.py -> build/lib/gff3tool/lib 2023-09-12T09:22:08,000 creating build/lib/gff3tool/bin 2023-09-12T09:22:08,001 copying gff3tool/bin/gff3_to_fasta.py -> build/lib/gff3tool/bin 2023-09-12T09:22:08,005 copying gff3tool/bin/version.py -> build/lib/gff3tool/bin 2023-09-12T09:22:08,007 copying gff3tool/bin/gff3_sort.py -> build/lib/gff3tool/bin 2023-09-12T09:22:08,010 copying gff3tool/bin/gff3_fix.py -> build/lib/gff3tool/bin 2023-09-12T09:22:08,011 copying gff3tool/bin/__init__.py -> build/lib/gff3tool/bin 2023-09-12T09:22:08,013 copying gff3tool/bin/gff3_merge.py -> build/lib/gff3tool/bin 2023-09-12T09:22:08,015 copying gff3tool/bin/gff3_QC.py -> build/lib/gff3tool/bin 2023-09-12T09:22:08,018 creating build/lib/gff3tool/lib/gff3_merge 2023-09-12T09:22:08,019 copying gff3tool/lib/gff3_merge/merge.py -> build/lib/gff3tool/lib/gff3_merge 2023-09-12T09:22:08,022 copying gff3tool/lib/gff3_merge/revision.py -> build/lib/gff3tool/lib/gff3_merge 2023-09-12T09:22:08,025 copying gff3tool/lib/gff3_merge/auto_replace_tag.py -> build/lib/gff3tool/lib/gff3_merge 2023-09-12T09:22:08,027 copying gff3tool/lib/gff3_merge/__init__.py -> build/lib/gff3tool/lib/gff3_merge 2023-09-12T09:22:08,030 creating build/lib/gff3tool/lib/ERROR 2023-09-12T09:22:08,031 copying gff3tool/lib/ERROR/ERROR.py -> build/lib/gff3tool/lib/ERROR 2023-09-12T09:22:08,033 copying gff3tool/lib/ERROR/__init__.py -> build/lib/gff3tool/lib/ERROR 2023-09-12T09:22:08,035 creating build/lib/gff3tool/lib/intra_model 2023-09-12T09:22:08,036 copying gff3tool/lib/intra_model/__init__.py -> build/lib/gff3tool/lib/intra_model 2023-09-12T09:22:08,038 copying gff3tool/lib/intra_model/intra_model.py -> build/lib/gff3tool/lib/intra_model 2023-09-12T09:22:08,042 creating build/lib/gff3tool/lib/single_feature 2023-09-12T09:22:08,043 copying gff3tool/lib/single_feature/single_feature.py -> build/lib/gff3tool/lib/single_feature 2023-09-12T09:22:08,045 copying gff3tool/lib/single_feature/__init__.py -> build/lib/gff3tool/lib/single_feature 2023-09-12T09:22:08,047 creating build/lib/gff3tool/lib/gff3 2023-09-12T09:22:08,048 copying gff3tool/lib/gff3/__init__.py -> build/lib/gff3tool/lib/gff3 2023-09-12T09:22:08,050 copying gff3tool/lib/gff3/gff3.py -> build/lib/gff3tool/lib/gff3 2023-09-12T09:22:08,054 creating build/lib/gff3tool/lib/function4gff 2023-09-12T09:22:08,055 copying gff3tool/lib/function4gff/function4gff.py -> build/lib/gff3tool/lib/function4gff 2023-09-12T09:22:08,058 copying gff3tool/lib/function4gff/__init__.py -> build/lib/gff3tool/lib/function4gff 2023-09-12T09:22:08,060 creating build/lib/gff3tool/lib/inter_model 2023-09-12T09:22:08,061 copying gff3tool/lib/inter_model/__init__.py -> build/lib/gff3tool/lib/inter_model 2023-09-12T09:22:08,063 copying gff3tool/lib/inter_model/inter_model.py -> build/lib/gff3tool/lib/inter_model 2023-09-12T09:22:08,066 creating build/lib/gff3tool/lib/gff3_fix 2023-09-12T09:22:08,067 copying gff3tool/lib/gff3_fix/fix.py -> build/lib/gff3tool/lib/gff3_fix 2023-09-12T09:22:08,070 copying gff3tool/lib/gff3_fix/__init__.py -> build/lib/gff3tool/lib/gff3_fix 2023-09-12T09:22:08,071 running egg_info 2023-09-12T09:22:08,129 writing gff3tool.egg-info/PKG-INFO 2023-09-12T09:22:08,132 writing dependency_links to gff3tool.egg-info/dependency_links.txt 2023-09-12T09:22:08,134 writing entry points to gff3tool.egg-info/entry_points.txt 2023-09-12T09:22:08,136 writing top-level names to gff3tool.egg-info/top_level.txt 2023-09-12T09:22:08,169 reading manifest file 'gff3tool.egg-info/SOURCES.txt' 2023-09-12T09:22:08,172 reading manifest template 'MANIFEST.in' 2023-09-12T09:22:08,183 writing manifest file 'gff3tool.egg-info/SOURCES.txt' 2023-09-12T09:22:08,185 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'gff3tool.lib.auto_assignment' is absent from the `packages` configuration. 2023-09-12T09:22:08,186 !! 2023-09-12T09:22:08,187 ******************************************************************************** 2023-09-12T09:22:08,188 ############################ 2023-09-12T09:22:08,189 # Package would be ignored # 2023-09-12T09:22:08,190 ############################ 2023-09-12T09:22:08,191 Python recognizes 'gff3tool.lib.auto_assignment' as an importable package[^1], 2023-09-12T09:22:08,192 but it is absent from setuptools' `packages` configuration. 2023-09-12T09:22:08,193 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-12T09:22:08,193 package, please make sure that 'gff3tool.lib.auto_assignment' is explicitly added 2023-09-12T09:22:08,194 to the `packages` configuration field. 2023-09-12T09:22:08,195 Alternatively, you can also rely on setuptools' discovery methods 2023-09-12T09:22:08,195 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-12T09:22:08,195 instead of `find_packages(...)`/`find:`). 2023-09-12T09:22:08,196 You can read more about "package discovery" on setuptools documentation page: 2023-09-12T09:22:08,197 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-12T09:22:08,198 If you don't want 'gff3tool.lib.auto_assignment' to be distributed and are 2023-09-12T09:22:08,198 already explicitly excluding 'gff3tool.lib.auto_assignment' via 2023-09-12T09:22:08,199 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-12T09:22:08,199 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-12T09:22:08,200 combination with a more fine grained `package-data` configuration. 2023-09-12T09:22:08,201 You can read more about "package data files" on setuptools documentation page: 2023-09-12T09:22:08,202 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-12T09:22:08,203 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-12T09:22:08,203 even if it does not contain any `.py` files. 2023-09-12T09:22:08,204 On the other hand, currently there is no concept of package data 2023-09-12T09:22:08,204 directory, all directories are treated like packages. 2023-09-12T09:22:08,205 ******************************************************************************** 2023-09-12T09:22:08,206 !! 2023-09-12T09:22:08,206 check.warn(importable) 2023-09-12T09:22:08,207 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'gff3tool.lib.check_gene_parent' is absent from the `packages` configuration. 2023-09-12T09:22:08,208 !! 2023-09-12T09:22:08,208 ******************************************************************************** 2023-09-12T09:22:08,209 ############################ 2023-09-12T09:22:08,209 # Package would be ignored # 2023-09-12T09:22:08,210 ############################ 2023-09-12T09:22:08,210 Python recognizes 'gff3tool.lib.check_gene_parent' as an importable package[^1], 2023-09-12T09:22:08,211 but it is absent from setuptools' `packages` configuration. 2023-09-12T09:22:08,212 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-12T09:22:08,213 package, please make sure that 'gff3tool.lib.check_gene_parent' is explicitly added 2023-09-12T09:22:08,213 to the `packages` configuration field. 2023-09-12T09:22:08,214 Alternatively, you can also rely on setuptools' discovery methods 2023-09-12T09:22:08,214 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-12T09:22:08,215 instead of `find_packages(...)`/`find:`). 2023-09-12T09:22:08,216 You can read more about "package discovery" on setuptools documentation page: 2023-09-12T09:22:08,217 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-12T09:22:08,218 If you don't want 'gff3tool.lib.check_gene_parent' to be distributed and are 2023-09-12T09:22:08,219 already explicitly excluding 'gff3tool.lib.check_gene_parent' via 2023-09-12T09:22:08,219 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-12T09:22:08,220 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-12T09:22:08,221 combination with a more fine grained `package-data` configuration. 2023-09-12T09:22:08,222 You can read more about "package data files" on setuptools documentation page: 2023-09-12T09:22:08,223 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-12T09:22:08,224 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-12T09:22:08,224 even if it does not contain any `.py` files. 2023-09-12T09:22:08,225 On the other hand, currently there is no concept of package data 2023-09-12T09:22:08,225 directory, all directories are treated like packages. 2023-09-12T09:22:08,226 ******************************************************************************** 2023-09-12T09:22:08,227 !! 2023-09-12T09:22:08,227 check.warn(importable) 2023-09-12T09:22:08,228 copying gff3tool/lib.md -> build/lib/gff3tool 2023-09-12T09:22:08,228 creating build/lib/gff3tool/lib/auto_assignment 2023-09-12T09:22:08,228 copying gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl -> build/lib/gff3tool/lib/auto_assignment 2023-09-12T09:22:08,229 copying gff3tool/lib/auto_assignment/find_match.pl -> build/lib/gff3tool/lib/auto_assignment 2023-09-12T09:22:08,229 copying gff3tool/lib/auto_assignment/gen_spreadsheet.pl -> build/lib/gff3tool/lib/auto_assignment 2023-09-12T09:22:08,230 creating build/lib/gff3tool/lib/check_gene_parent 2023-09-12T09:22:08,230 copying gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl -> build/lib/gff3tool/lib/check_gene_parent 2023-09-12T09:22:08,231 creating build/lib/gff3tool/lib/ncbi-blast+ 2023-09-12T09:22:08,231 creating build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:08,232 copying gff3tool/lib/ncbi-blast+/bin/blast_formatter -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:08,712 copying gff3tool/lib/ncbi-blast+/bin/blastdb_aliastool -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:09,003 copying gff3tool/lib/ncbi-blast+/bin/blastdbcheck -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:09,388 copying gff3tool/lib/ncbi-blast+/bin/blastdbcmd -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:09,815 copying gff3tool/lib/ncbi-blast+/bin/blastn -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:10,282 copying gff3tool/lib/ncbi-blast+/bin/blastp -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:10,744 copying gff3tool/lib/ncbi-blast+/bin/blastx -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:11,242 copying gff3tool/lib/ncbi-blast+/bin/convert2blastmask -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:11,543 copying gff3tool/lib/ncbi-blast+/bin/deltablast -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:12,044 copying gff3tool/lib/ncbi-blast+/bin/dustmasker -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:12,355 copying gff3tool/lib/ncbi-blast+/bin/legacy_blast.pl -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:12,359 copying gff3tool/lib/ncbi-blast+/bin/makeblastdb -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:12,711 copying gff3tool/lib/ncbi-blast+/bin/makembindex -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:13,036 copying gff3tool/lib/ncbi-blast+/bin/makeprofiledb -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:13,350 copying gff3tool/lib/ncbi-blast+/bin/psiblast -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:13,804 copying gff3tool/lib/ncbi-blast+/bin/rpsblast -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:14,266 copying gff3tool/lib/ncbi-blast+/bin/rpstblastn -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:14,765 copying gff3tool/lib/ncbi-blast+/bin/segmasker -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:15,074 copying gff3tool/lib/ncbi-blast+/bin/tblastn -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:15,561 copying gff3tool/lib/ncbi-blast+/bin/tblastx -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:16,015 copying gff3tool/lib/ncbi-blast+/bin/update_blastdb.pl -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:16,018 copying gff3tool/lib/ncbi-blast+/bin/windowmasker -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:16,368 creating build/bdist.linux-armv7l 2023-09-12T09:22:16,368 creating build/bdist.linux-armv7l/wheel 2023-09-12T09:22:16,369 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data 2023-09-12T09:22:16,370 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib 2023-09-12T09:22:16,371 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool 2023-09-12T09:22:16,372 copying build/lib/gff3tool/lib.md -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool 2023-09-12T09:22:16,374 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib 2023-09-12T09:22:16,375 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge 2023-09-12T09:22:16,376 copying build/lib/gff3tool/lib/gff3_merge/merge.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge 2023-09-12T09:22:16,378 copying build/lib/gff3tool/lib/gff3_merge/revision.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge 2023-09-12T09:22:16,380 copying build/lib/gff3tool/lib/gff3_merge/auto_replace_tag.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge 2023-09-12T09:22:16,382 copying build/lib/gff3tool/lib/gff3_merge/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge 2023-09-12T09:22:16,384 copying build/lib/gff3tool/lib/replace_OGS.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib 2023-09-12T09:22:16,387 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+ 2023-09-12T09:22:16,388 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:16,389 copying build/lib/gff3tool/lib/ncbi-blast+/bin/segmasker -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:16,685 copying build/lib/gff3tool/lib/ncbi-blast+/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:16,687 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastn -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:17,172 copying build/lib/gff3tool/lib/ncbi-blast+/bin/makembindex -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:17,466 copying build/lib/gff3tool/lib/ncbi-blast+/bin/rpsblast -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:18,038 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastdb_aliastool -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:18,323 copying build/lib/gff3tool/lib/ncbi-blast+/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:18,326 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blast_formatter -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:18,791 copying build/lib/gff3tool/lib/ncbi-blast+/bin/rpstblastn -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:20,233 copying build/lib/gff3tool/lib/ncbi-blast+/bin/psiblast -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:20,723 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastp -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:21,175 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastx -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:21,612 copying build/lib/gff3tool/lib/ncbi-blast+/bin/tblastn -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:22,059 copying build/lib/gff3tool/lib/ncbi-blast+/bin/tblastx -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:22,498 copying build/lib/gff3tool/lib/ncbi-blast+/bin/makeblastdb -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:22,824 copying build/lib/gff3tool/lib/ncbi-blast+/bin/convert2blastmask -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:23,111 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastdbcmd -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:23,565 copying build/lib/gff3tool/lib/ncbi-blast+/bin/dustmasker -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:23,898 copying build/lib/gff3tool/lib/ncbi-blast+/bin/makeprofiledb -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:24,869 copying build/lib/gff3tool/lib/ncbi-blast+/bin/deltablast -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:25,341 copying build/lib/gff3tool/lib/ncbi-blast+/bin/windowmasker -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:25,959 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastdbcheck -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-12T09:22:26,297 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ERROR 2023-09-12T09:22:26,298 copying build/lib/gff3tool/lib/ERROR/ERROR.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ERROR 2023-09-12T09:22:26,300 copying build/lib/gff3tool/lib/ERROR/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ERROR 2023-09-12T09:22:26,302 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/auto_assignment 2023-09-12T09:22:26,303 copying build/lib/gff3tool/lib/auto_assignment/find_match.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/auto_assignment 2023-09-12T09:22:26,305 copying build/lib/gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/auto_assignment 2023-09-12T09:22:26,307 copying build/lib/gff3tool/lib/auto_assignment/gen_spreadsheet.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/auto_assignment 2023-09-12T09:22:26,310 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/intra_model 2023-09-12T09:22:26,311 copying build/lib/gff3tool/lib/intra_model/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/intra_model 2023-09-12T09:22:26,312 copying build/lib/gff3tool/lib/intra_model/intra_model.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/intra_model 2023-09-12T09:22:26,315 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/single_feature 2023-09-12T09:22:26,317 copying build/lib/gff3tool/lib/single_feature/single_feature.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/single_feature 2023-09-12T09:22:26,319 copying build/lib/gff3tool/lib/single_feature/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/single_feature 2023-09-12T09:22:26,321 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3 2023-09-12T09:22:26,323 copying build/lib/gff3tool/lib/gff3/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3 2023-09-12T09:22:26,325 copying build/lib/gff3tool/lib/gff3/gff3.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3 2023-09-12T09:22:26,329 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/check_gene_parent 2023-09-12T09:22:26,330 copying build/lib/gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/check_gene_parent 2023-09-12T09:22:26,333 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/function4gff 2023-09-12T09:22:26,335 copying build/lib/gff3tool/lib/function4gff/function4gff.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/function4gff 2023-09-12T09:22:26,337 copying build/lib/gff3tool/lib/function4gff/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/function4gff 2023-09-12T09:22:26,340 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/inter_model 2023-09-12T09:22:26,341 copying build/lib/gff3tool/lib/inter_model/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/inter_model 2023-09-12T09:22:26,343 copying build/lib/gff3tool/lib/inter_model/inter_model.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/inter_model 2023-09-12T09:22:26,345 copying build/lib/gff3tool/lib/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib 2023-09-12T09:22:26,347 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_fix 2023-09-12T09:22:26,349 copying build/lib/gff3tool/lib/gff3_fix/fix.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_fix 2023-09-12T09:22:26,352 copying build/lib/gff3tool/lib/gff3_fix/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_fix 2023-09-12T09:22:26,354 copying build/lib/gff3tool/lib/id_processor.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib 2023-09-12T09:22:26,357 copying build/lib/gff3tool/lib/utils.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib 2023-09-12T09:22:26,359 copying build/lib/gff3tool/lib/gff3_ID_generator.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib 2023-09-12T09:22:26,362 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/bin 2023-09-12T09:22:26,363 copying build/lib/gff3tool/bin/gff3_to_fasta.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/bin 2023-09-12T09:22:26,367 copying build/lib/gff3tool/bin/version.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/bin 2023-09-12T09:22:26,369 copying build/lib/gff3tool/bin/gff3_sort.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/bin 2023-09-12T09:22:26,372 copying build/lib/gff3tool/bin/gff3_fix.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/bin 2023-09-12T09:22:26,374 copying build/lib/gff3tool/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/bin 2023-09-12T09:22:26,376 copying build/lib/gff3tool/bin/gff3_merge.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/bin 2023-09-12T09:22:26,379 copying build/lib/gff3tool/bin/gff3_QC.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/bin 2023-09-12T09:22:26,382 copying build/lib/gff3tool/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool 2023-09-12T09:22:26,383 running install_egg_info 2023-09-12T09:22:26,410 Copying gff3tool.egg-info to build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool-2.0.1-py3.11.egg-info 2023-09-12T09:22:26,421 running install_scripts 2023-09-12T09:22:26,473 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.dist-info/WHEEL 2023-09-12T09:22:26,476 creating '/tmp/pip-wheel-04jobx2n/gff3tool-2.0.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-12T09:22:26,480 adding 'gff3tool-2.0.1.data/purelib/gff3tool/__init__.py' 2023-09-12T09:22:26,481 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib.md' 2023-09-12T09:22:26,483 adding 'gff3tool-2.0.1.data/purelib/gff3tool/bin/__init__.py' 2023-09-12T09:22:26,485 adding 'gff3tool-2.0.1.data/purelib/gff3tool/bin/gff3_QC.py' 2023-09-12T09:22:26,487 adding 'gff3tool-2.0.1.data/purelib/gff3tool/bin/gff3_fix.py' 2023-09-12T09:22:26,489 adding 'gff3tool-2.0.1.data/purelib/gff3tool/bin/gff3_merge.py' 2023-09-12T09:22:26,492 adding 'gff3tool-2.0.1.data/purelib/gff3tool/bin/gff3_sort.py' 2023-09-12T09:22:26,496 adding 'gff3tool-2.0.1.data/purelib/gff3tool/bin/gff3_to_fasta.py' 2023-09-12T09:22:26,498 adding 'gff3tool-2.0.1.data/purelib/gff3tool/bin/version.py' 2023-09-12T09:22:26,500 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/__init__.py' 2023-09-12T09:22:26,503 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_ID_generator.py' 2023-09-12T09:22:26,505 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/id_processor.py' 2023-09-12T09:22:26,511 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/replace_OGS.py' 2023-09-12T09:22:26,513 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/utils.py' 2023-09-12T09:22:26,515 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ERROR/ERROR.py' 2023-09-12T09:22:26,516 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ERROR/__init__.py' 2023-09-12T09:22:26,519 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl' 2023-09-12T09:22:26,521 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/auto_assignment/find_match.pl' 2023-09-12T09:22:26,523 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/auto_assignment/gen_spreadsheet.pl' 2023-09-12T09:22:26,526 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl' 2023-09-12T09:22:26,528 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/function4gff/__init__.py' 2023-09-12T09:22:26,530 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/function4gff/function4gff.py' 2023-09-12T09:22:26,532 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3/__init__.py' 2023-09-12T09:22:26,540 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3/gff3.py' 2023-09-12T09:22:26,543 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_fix/__init__.py' 2023-09-12T09:22:26,547 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_fix/fix.py' 2023-09-12T09:22:26,550 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge/__init__.py' 2023-09-12T09:22:26,553 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge/auto_replace_tag.py' 2023-09-12T09:22:26,555 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge/merge.py' 2023-09-12T09:22:26,558 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge/revision.py' 2023-09-12T09:22:26,560 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/inter_model/__init__.py' 2023-09-12T09:22:26,562 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/inter_model/inter_model.py' 2023-09-12T09:22:26,564 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/intra_model/__init__.py' 2023-09-12T09:22:26,567 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/intra_model/intra_model.py' 2023-09-12T09:22:31,630 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/blast_formatter' 2023-09-12T09:22:35,251 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastdb_aliastool' 2023-09-12T09:22:38,975 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastdbcheck' 2023-09-12T09:22:43,661 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastdbcmd' 2023-09-12T09:22:49,310 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastn' 2023-09-12T09:22:54,650 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastp' 2023-09-12T09:23:00,324 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastx' 2023-09-12T09:23:03,898 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/convert2blastmask' 2023-09-12T09:23:09,517 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/deltablast' 2023-09-12T09:23:13,131 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/dustmasker' 2023-09-12T09:23:13,306 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/legacy_blast.pl' 2023-09-12T09:23:16,922 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/makeblastdb' 2023-09-12T09:23:20,782 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/makembindex' 2023-09-12T09:23:24,325 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/makeprofiledb' 2023-09-12T09:23:30,018 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/psiblast' 2023-09-12T09:23:35,731 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/rpsblast' 2023-09-12T09:23:41,385 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/rpstblastn' 2023-09-12T09:23:45,279 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/segmasker' 2023-09-12T09:23:50,927 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/tblastn' 2023-09-12T09:23:56,692 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/tblastx' 2023-09-12T09:23:57,118 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/update_blastdb.pl' 2023-09-12T09:24:01,121 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/windowmasker' 2023-09-12T09:24:01,326 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/single_feature/__init__.py' 2023-09-12T09:24:01,328 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/single_feature/single_feature.py' 2023-09-12T09:24:01,330 adding 'gff3tool-2.0.1.dist-info/METADATA' 2023-09-12T09:24:01,331 adding 'gff3tool-2.0.1.dist-info/WHEEL' 2023-09-12T09:24:01,332 adding 'gff3tool-2.0.1.dist-info/entry_points.txt' 2023-09-12T09:24:01,333 adding 'gff3tool-2.0.1.dist-info/top_level.txt' 2023-09-12T09:24:01,335 adding 'gff3tool-2.0.1.dist-info/RECORD' 2023-09-12T09:24:01,413 removing build/bdist.linux-armv7l/wheel 2023-09-12T09:24:01,744 Building wheel for gff3tool (setup.py): finished with status 'done' 2023-09-12T09:24:05,768 Created wheel for gff3tool: filename=gff3tool-2.0.1-cp311-cp311-linux_armv7l.whl size=177059802 sha256=a9753f3c49fd1cb2cdd4a192e12efbded3d886fc08011031e9ebaeaf96095389 2023-09-12T09:24:05,769 Stored in directory: /tmp/pip-ephem-wheel-cache-hf1eme4g/wheels/a0/80/6c/b7c3fe7b94034a14cb5b875b7d9472fc525caac471c27b7349 2023-09-12T09:24:05,837 Successfully built gff3tool 2023-09-12T09:24:09,783 Removed build tracker: '/tmp/pip-build-tracker-nx3m0ybg'