2023-09-12T12:55:07,363 Created temporary directory: /tmp/pip-build-tracker-546uivmp
2023-09-12T12:55:07,364 Initialized build tracking at /tmp/pip-build-tracker-546uivmp
2023-09-12T12:55:07,364 Created build tracker: /tmp/pip-build-tracker-546uivmp
2023-09-12T12:55:07,365 Entered build tracker: /tmp/pip-build-tracker-546uivmp
2023-09-12T12:55:07,365 Created temporary directory: /tmp/pip-wheel-_0gn4fwm
2023-09-12T12:55:07,369 Created temporary directory: /tmp/pip-ephem-wheel-cache-2tlbewe7
2023-09-12T12:55:07,390 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-12T12:55:07,394 2 location(s) to search for versions of clustalo:
2023-09-12T12:55:07,394 * https://pypi.org/simple/clustalo/
2023-09-12T12:55:07,394 * https://www.piwheels.org/simple/clustalo/
2023-09-12T12:55:07,394 Fetching project page and analyzing links: https://pypi.org/simple/clustalo/
2023-09-12T12:55:07,395 Getting page https://pypi.org/simple/clustalo/
2023-09-12T12:55:07,397 Found index url https://pypi.org/simple/
2023-09-12T12:55:07,679 Fetched page https://pypi.org/simple/clustalo/ as application/vnd.pypi.simple.v1+json
2023-09-12T12:55:07,681   Found link https://files.pythonhosted.org/packages/e4/ec/57f58e09521cd16cf676c99dc959c4d0d58ed38e966b6dd743a9499cdbf2/clustalo-0.1.macosx-10.9-x86_64.tar.gz (from https://pypi.org/simple/clustalo/), version: 0.1.macosx-10.9-x86_64
2023-09-12T12:55:07,682   Found link https://files.pythonhosted.org/packages/ef/32/5414c43fb3d011a28ee337f7bf201c8fe8b01b2605af7bf9fe6ff32fa84d/clustalo-0.1.tar.gz (from https://pypi.org/simple/clustalo/), version: 0.1
2023-09-12T12:55:07,683   Found link https://files.pythonhosted.org/packages/33/5b/491d3340dece281bd6d62f617e12a688fee7d26ab45a48de9909cec18b08/clustalo-0.1.1.macosx-10.9-x86_64.tar.gz (from https://pypi.org/simple/clustalo/), version: 0.1.1.macosx-10.9-x86_64
2023-09-12T12:55:07,684   Found link https://files.pythonhosted.org/packages/88/f6/05689339186b64b7e7671ceac15c73a6e3846f4749077f8eeb29d3df09ff/clustalo-0.1.1.tar.gz (from https://pypi.org/simple/clustalo/), version: 0.1.1
2023-09-12T12:55:07,684   Skipping link: No binaries permitted for clustalo: https://files.pythonhosted.org/packages/e2/6a/f6ef84019b667b10bee110f38587ce893ac3c5ad5a9085e7f7698610170c/clustalo-0.1.2-cp27-cp27m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/clustalo/)
2023-09-12T12:55:07,685   Skipping link: No binaries permitted for clustalo: https://files.pythonhosted.org/packages/66/9e/a0d812ee95b4452bfaaf6ee578c325def6ca35b976527ca9ecd1b86989b6/clustalo-0.1.2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/clustalo/)
2023-09-12T12:55:07,685   Found link https://files.pythonhosted.org/packages/13/57/043f6a470fc22c15d1d1ec1e89c11123a5dc61af9aa04ff16f9e9747a1cc/clustalo-0.1.2.tar.gz (from https://pypi.org/simple/clustalo/), version: 0.1.2
2023-09-12T12:55:07,686 Fetching project page and analyzing links: https://www.piwheels.org/simple/clustalo/
2023-09-12T12:55:07,687 Getting page https://www.piwheels.org/simple/clustalo/
2023-09-12T12:55:07,688 Found index url https://www.piwheels.org/simple/
2023-09-12T12:55:08,063 Fetched page https://www.piwheels.org/simple/clustalo/ as text/html
2023-09-12T12:55:08,064 Skipping link: not a file: https://www.piwheels.org/simple/clustalo/
2023-09-12T12:55:08,065 Skipping link: not a file: https://pypi.org/simple/clustalo/
2023-09-12T12:55:08,098 Given no hashes to check 1 links for project 'clustalo': discarding no candidates
2023-09-12T12:55:08,130 Collecting clustalo==0.1.2
2023-09-12T12:55:08,134   Created temporary directory: /tmp/pip-unpack-fnvptbov
2023-09-12T12:55:08,291   Downloading clustalo-0.1.2.tar.gz (3.6 kB)
2023-09-12T12:55:08,314   Added clustalo==0.1.2 from https://files.pythonhosted.org/packages/13/57/043f6a470fc22c15d1d1ec1e89c11123a5dc61af9aa04ff16f9e9747a1cc/clustalo-0.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-546uivmp'
2023-09-12T12:55:08,316   Running setup.py (path:/tmp/pip-wheel-_0gn4fwm/clustalo_96789b253f5f48e2b238af738ec06b8c/setup.py) egg_info for package clustalo
2023-09-12T12:55:08,317   Created temporary directory: /tmp/pip-pip-egg-info-08mtw4xe
2023-09-12T12:55:08,318   Preparing metadata (setup.py): started
2023-09-12T12:55:08,319   Running command python setup.py egg_info
2023-09-12T12:55:09,395   running egg_info
2023-09-12T12:55:09,397   creating /tmp/pip-pip-egg-info-08mtw4xe/clustalo.egg-info
2023-09-12T12:55:09,421   writing /tmp/pip-pip-egg-info-08mtw4xe/clustalo.egg-info/PKG-INFO
2023-09-12T12:55:09,424   writing dependency_links to /tmp/pip-pip-egg-info-08mtw4xe/clustalo.egg-info/dependency_links.txt
2023-09-12T12:55:09,426   writing top-level names to /tmp/pip-pip-egg-info-08mtw4xe/clustalo.egg-info/top_level.txt
2023-09-12T12:55:09,427   writing manifest file '/tmp/pip-pip-egg-info-08mtw4xe/clustalo.egg-info/SOURCES.txt'
2023-09-12T12:55:09,498   reading manifest file '/tmp/pip-pip-egg-info-08mtw4xe/clustalo.egg-info/SOURCES.txt'
2023-09-12T12:55:09,499   reading manifest template 'MANIFEST.in'
2023-09-12T12:55:09,501   writing manifest file '/tmp/pip-pip-egg-info-08mtw4xe/clustalo.egg-info/SOURCES.txt'
2023-09-12T12:55:09,609   Preparing metadata (setup.py): finished with status 'done'
2023-09-12T12:55:09,612   Source in /tmp/pip-wheel-_0gn4fwm/clustalo_96789b253f5f48e2b238af738ec06b8c has version 0.1.2, which satisfies requirement clustalo==0.1.2 from https://files.pythonhosted.org/packages/13/57/043f6a470fc22c15d1d1ec1e89c11123a5dc61af9aa04ff16f9e9747a1cc/clustalo-0.1.2.tar.gz
2023-09-12T12:55:09,613   Removed clustalo==0.1.2 from https://files.pythonhosted.org/packages/13/57/043f6a470fc22c15d1d1ec1e89c11123a5dc61af9aa04ff16f9e9747a1cc/clustalo-0.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-546uivmp'
2023-09-12T12:55:09,617 Created temporary directory: /tmp/pip-unpack-7vffzpxc
2023-09-12T12:55:09,618 Created temporary directory: /tmp/pip-unpack-5fe4msb6
2023-09-12T12:55:09,620 Building wheels for collected packages: clustalo
2023-09-12T12:55:09,624   Created temporary directory: /tmp/pip-wheel-1mcfafn2
2023-09-12T12:55:09,624   Building wheel for clustalo (setup.py): started
2023-09-12T12:55:09,626   Destination directory: /tmp/pip-wheel-1mcfafn2
2023-09-12T12:55:09,626   Running command python setup.py bdist_wheel
2023-09-12T12:55:10,635   running bdist_wheel
2023-09-12T12:55:10,727   running build
2023-09-12T12:55:10,728   running build_ext
2023-09-12T12:55:11,249   building 'clustalo' extension
2023-09-12T12:55:11,250   creating build
2023-09-12T12:55:11,250   creating build/temp.linux-armv7l-cpython-311
2023-09-12T12:55:11,251   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/clustalo -I/usr/local/include/clustalo -I/usr/include/python3.11 -c clustalo.c -o build/temp.linux-armv7l-cpython-311/clustalo.o -fopenmp
2023-09-12T12:55:11,610   clustalo.c:2:10: fatal error: clustal-omega.h: No such file or directory
2023-09-12T12:55:11,610       2 | #include <clustal-omega.h>
2023-09-12T12:55:11,611         |          ^~~~~~~~~~~~~~~~~
2023-09-12T12:55:11,611   compilation terminated.
2023-09-12T12:55:11,615   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2023-09-12T12:55:11,764   ERROR: [present-rich] python setup.py bdist_wheel exited with 1
2023-09-12T12:55:11,783   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2023-09-12T12:55:11,783   exec(compile('"'"''"'"''"'"'
2023-09-12T12:55:11,783   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-12T12:55:11,783   #
2023-09-12T12:55:11,783   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-12T12:55:11,783   #   import from `distutils.core` to work with newer packaging standards.
2023-09-12T12:55:11,783   # - It provides a clear error message when setuptools is not installed.
2023-09-12T12:55:11,783   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-12T12:55:11,783   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-12T12:55:11,783   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-12T12:55:11,783   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-12T12:55:11,783   import os, sys, tokenize
2023-09-12T12:55:11,783   
2023-09-12T12:55:11,783   try:
2023-09-12T12:55:11,783       import setuptools
2023-09-12T12:55:11,783   except ImportError as error:
2023-09-12T12:55:11,783       print(
2023-09-12T12:55:11,783           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-12T12:55:11,783           "the build environment.",
2023-09-12T12:55:11,783           file=sys.stderr,
2023-09-12T12:55:11,783       )
2023-09-12T12:55:11,783       sys.exit(1)
2023-09-12T12:55:11,783   
2023-09-12T12:55:11,783   __file__ = %r
2023-09-12T12:55:11,783   sys.argv[0] = __file__
2023-09-12T12:55:11,783   
2023-09-12T12:55:11,783   if os.path.exists(__file__):
2023-09-12T12:55:11,783       filename = __file__
2023-09-12T12:55:11,783       with tokenize.open(__file__) as f:
2023-09-12T12:55:11,783           setup_py_code = f.read()
2023-09-12T12:55:11,783   else:
2023-09-12T12:55:11,783       filename = "<auto-generated setuptools caller>"
2023-09-12T12:55:11,783       setup_py_code = "from setuptools import setup; setup()"
2023-09-12T12:55:11,783   
2023-09-12T12:55:11,783   exec(compile(setup_py_code, filename, "exec"))
2023-09-12T12:55:11,783   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-_0gn4fwm/clustalo_96789b253f5f48e2b238af738ec06b8c/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-1mcfafn2[/]
2023-09-12T12:55:11,784   [bold magenta]cwd[/]: /tmp/pip-wheel-_0gn4fwm/clustalo_96789b253f5f48e2b238af738ec06b8c/
2023-09-12T12:55:11,785   Building wheel for clustalo (setup.py): finished with status 'error'
2023-09-12T12:55:11,787   ERROR: Failed building wheel for clustalo
2023-09-12T12:55:11,788   Running setup.py clean for clustalo
2023-09-12T12:55:11,790   Running command python setup.py clean
2023-09-12T12:55:12,773   running clean
2023-09-12T12:55:12,818   removing 'build/temp.linux-armv7l-cpython-311' (and everything under it)
2023-09-12T12:55:12,820   'build/lib.linux-armv7l-cpython-311' does not exist -- can't clean it
2023-09-12T12:55:12,820   'build/bdist.linux-armv7l' does not exist -- can't clean it
2023-09-12T12:55:12,821   'build/scripts-3.11' does not exist -- can't clean it
2023-09-12T12:55:12,822   removing 'build'
2023-09-12T12:55:12,927 Failed to build clustalo
2023-09-12T12:55:12,929 ERROR: Failed to build one or more wheels
2023-09-12T12:55:12,930 Exception information:
2023-09-12T12:55:12,930 Traceback (most recent call last):
2023-09-12T12:55:12,930   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-12T12:55:12,930     status = run_func(*args)
2023-09-12T12:55:12,930              ^^^^^^^^^^^^^^^
2023-09-12T12:55:12,930   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-12T12:55:12,930     return func(self, options, args)
2023-09-12T12:55:12,930            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T12:55:12,930   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run
2023-09-12T12:55:12,930     raise CommandError("Failed to build one or more wheels")
2023-09-12T12:55:12,930 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2023-09-12T12:55:12,933 Removed build tracker: '/tmp/pip-build-tracker-546uivmp'