2023-09-12T14:56:23,580 Created temporary directory: /tmp/pip-build-tracker-biecv6pm 2023-09-12T14:56:23,582 Initialized build tracking at /tmp/pip-build-tracker-biecv6pm 2023-09-12T14:56:23,582 Created build tracker: /tmp/pip-build-tracker-biecv6pm 2023-09-12T14:56:23,582 Entered build tracker: /tmp/pip-build-tracker-biecv6pm 2023-09-12T14:56:23,583 Created temporary directory: /tmp/pip-wheel-i82cks_x 2023-09-12T14:56:23,586 Created temporary directory: /tmp/pip-ephem-wheel-cache-pkaa5bv8 2023-09-12T14:56:23,609 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-12T14:56:23,613 2 location(s) to search for versions of pystospa: 2023-09-12T14:56:23,613 * https://pypi.org/simple/pystospa/ 2023-09-12T14:56:23,613 * https://www.piwheels.org/simple/pystospa/ 2023-09-12T14:56:23,614 Fetching project page and analyzing links: https://pypi.org/simple/pystospa/ 2023-09-12T14:56:23,615 Getting page https://pypi.org/simple/pystospa/ 2023-09-12T14:56:23,616 Found index url https://pypi.org/simple/ 2023-09-12T14:56:23,760 Fetched page https://pypi.org/simple/pystospa/ as application/vnd.pypi.simple.v1+json 2023-09-12T14:56:23,767 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/df/eb/98ff92c988983eff94b15e47fec89f1a813f7ec7e32f1d928c89eb291dba/pystospa-2.0.16-cp27-cp27m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,768 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/c1/74/fee94f6179982168608b256d05cdb6afa95ed4938882d12a4cdebc3667dd/pystospa-2.0.16-cp27-cp27mu-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,769 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/72/44/0db1ea91a02948b5f5cfc02be0fd22a41a62c31da30ccfb9b5907d37b31c/pystospa-2.0.16-cp34-cp34m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,769 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/40/4b/6c4d4d851d13c125784d3030da3427c17b2fc9fd857300b1b7dfabb3ed78/pystospa-2.0.16-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,770 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/31/66/d222b231b24048772837cf619bd3e33e72dc51e46a87f127078173e910a3/pystospa-2.0.16-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,771 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/94/2e/a5e3c5ac3514df57cc5ff7875e9b81e16f159eb2fea2afe2e895653d9e1c/pystospa-2.0.16-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,771 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/89/d9/4088f8de6beea8d5c8b2bb05504b7bdd1253ca83302648cd8bd1c9fc86a7/pystospa-2.0.16-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,772 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/c0/2d/1d23b61fee52c79a10aa8960910192c7c4f986d0e7afc82a32e404e85d7c/pystospa-2.0.17-cp27-cp27m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,772 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/c1/de/6014596f571c117819ddc0492b82ff2b698e944f7a4ef1f7191320fdcffb/pystospa-2.0.17-cp27-cp27mu-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,773 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/15/bd/428b64d66fb43b33474e1c8411ced96d9f1f80bad0a1911fe6f09f185aa9/pystospa-2.0.17-cp34-cp34m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,774 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/11/19/e6df5372bf6239d80a62fc906a1f7bd00fef1945d112ba68e81ed94f6ba6/pystospa-2.0.17-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,774 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/d0/72/24a3b1d463014e655a21bb6e05e95733972d5ff69b34c20622269fbbb16e/pystospa-2.0.17-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,775 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/41/fe/b3a5902317800be723a651e2c43ac9d60a051990a049f9a0969787228c64/pystospa-2.0.17-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,776 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/07/dc/06dcad0676a57b9f9ee5276cb7bbd0fc0275f71d9de19a5e694ca9535913/pystospa-2.0.17-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,776 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/1d/e4/66a075adf519520e6434b7474ae41258c9854baa958740019dde04473acc/pystospa-2.0.18-cp27-cp27m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,777 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/94/2c/c6c64c2ca77e50b126d757d507b425ecb002740a34d6fb959d18d0237e16/pystospa-2.0.18-cp27-cp27mu-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,777 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/af/34/55e1081a22554f8c61cb327b6746b82b161046a91bd4661764d7571c678f/pystospa-2.0.18-cp34-cp34m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,777 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/50/9a/b7bb443bb4762c2c16644b6e57b021916c219d1c8e944dda012faa51b404/pystospa-2.0.18-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,778 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/05/fb/bfd8f67726e41ddc8ab174777dfdb1cd9adb5697c5018bebd632dd860d58/pystospa-2.0.18-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,779 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/05/90/472cb189690849c5458ac4bd82846d04fe79ab7b52595c55c0dc02ab65dd/pystospa-2.0.18-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,779 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/ec/3f/c08a212e804f0e2eb3cf92f99a8d2bc99621072ddb61654ebde52c1a1136/pystospa-2.0.18-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,780 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/b0/dd/0701056ea3ac5558f4edc6c926e3e2db700b04cfa510e16b282cf919e47a/pystospa-2.0.19-cp27-cp27m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,780 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/f4/b4/f08334cd27803fffaf92693fed604fbb2a4544dff08153c471be43ea0c39/pystospa-2.0.19-cp27-cp27mu-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,781 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/0e/61/1bc6e52016a6d35f4f78852269386937f4d784d788612d236a640c8f89bb/pystospa-2.0.19-cp34-cp34m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,781 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/f8/1a/01744473134d0167bb4d322b2220ca3032ef6dd3b5eba48fb13ce9d6a6df/pystospa-2.0.19-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,782 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/f5/5d/b786d0cd97cb7a5970d9b0e3f868ef32fc3a250a6fd884e478f9cfaf365f/pystospa-2.0.19-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,783 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/ad/7f/85051ae28e3abac50d8d005d5cb3c484df62570d5e4a2ef9280458af8c6e/pystospa-2.0.19-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,783 Skipping link: No binaries permitted for pystospa: https://files.pythonhosted.org/packages/bd/a0/ed25144ff5911f42e5b8f3cdc2031a1c15c22eb90eb40c6d952d6c0da7df/pystospa-2.0.19-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pystospa/) 2023-09-12T14:56:23,784 Found link https://files.pythonhosted.org/packages/d3/80/6926351910fec0ac1fdc591cedd504f902fa13e6d8c6f4e2e6dc968b1e9c/pystospa-2.0.19.tar.gz (from https://pypi.org/simple/pystospa/), version: 2.0.19 2023-09-12T14:56:23,784 Found link https://files.pythonhosted.org/packages/9d/34/dbcf1a0a4398f3a941f46f2cdac607e0f44f2352789a4cd8783e02b5cc50/pystospa-2.0.20.tar.gz (from https://pypi.org/simple/pystospa/), version: 2.0.20 2023-09-12T14:56:23,785 Found link https://files.pythonhosted.org/packages/8a/bf/30d9e819cc495da0063bbd1d6904456ce0f0c18f245a62f6ae1b378e83cc/pystospa-2.0.21.tar.gz (from https://pypi.org/simple/pystospa/), version: 2.0.21 2023-09-12T14:56:23,786 Found link https://files.pythonhosted.org/packages/71/3d/03d0e48a94274fd51de06d09430232cb0433918eaf5597e5351b4932f373/pystospa-2.0.22.tar.gz (from https://pypi.org/simple/pystospa/), version: 2.0.22 2023-09-12T14:56:23,786 Found link https://files.pythonhosted.org/packages/54/d6/a177b8539ebe5b01963497b8de858282f6badb6e3dc995f2be9a99ffb2b3/pystospa-2.0.23.tar.gz (from https://pypi.org/simple/pystospa/), version: 2.0.23 2023-09-12T14:56:23,787 Found link https://files.pythonhosted.org/packages/c2/e0/99e4662c1e640613414d83dd49aecebfd36043005bc96ca9ebfaec5d80e8/pystospa-2.0.24.tar.gz (from https://pypi.org/simple/pystospa/), version: 2.0.24 2023-09-12T14:56:23,787 Found link https://files.pythonhosted.org/packages/08/a6/eb086fa38b1bbbfe3b38e30dca9edccea243d5b289cdf6fab252dcd7f395/pystospa-2.0.25.tar.gz (from https://pypi.org/simple/pystospa/), version: 2.0.25 2023-09-12T14:56:23,788 Found link https://files.pythonhosted.org/packages/49/ff/2b59477c3ea749ca2bbf2df9dc90b8b88ae36fc05640542ba08bf9e2cd81/pystospa-2.0.26.tar.gz (from https://pypi.org/simple/pystospa/), version: 2.0.26 2023-09-12T14:56:23,789 Found link https://files.pythonhosted.org/packages/fe/a9/557434aa9f673aa47828bde1abd7d3f38bbf3a7fc1dfd621953c8ec8b956/pystospa-2.0.28.tar.gz (from https://pypi.org/simple/pystospa/), version: 2.0.28 2023-09-12T14:56:23,790 Found link https://files.pythonhosted.org/packages/0f/6f/c94415fc921f91132b5084ad823f8499f06fdb412e470942916ff46556f9/pystospa-2.0.29.tar.gz (from https://pypi.org/simple/pystospa/), version: 2.0.29 2023-09-12T14:56:23,790 Found link https://files.pythonhosted.org/packages/6f/dc/a8c50f8b70f0661c137d291437b5b915b624fba79497141f218bb67a659a/pystospa-2.0.30.tar.gz (from https://pypi.org/simple/pystospa/), version: 2.0.30 2023-09-12T14:56:23,791 Fetching project page and analyzing links: https://www.piwheels.org/simple/pystospa/ 2023-09-12T14:56:23,792 Getting page https://www.piwheels.org/simple/pystospa/ 2023-09-12T14:56:23,793 Found index url https://www.piwheels.org/simple/ 2023-09-12T14:56:24,068 Fetched page https://www.piwheels.org/simple/pystospa/ as text/html 2023-09-12T14:56:24,079 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.21-cp37-cp37m-linux_armv6l.whl#sha256=80492283e747b217c5ddc43ff70e9f4d61b193a8e425c85dbac3571bde5e3219 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,079 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.21-cp37-cp37m-linux_armv7l.whl#sha256=80492283e747b217c5ddc43ff70e9f4d61b193a8e425c85dbac3571bde5e3219 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,080 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.21-cp39-cp39-linux_armv6l.whl#sha256=3e097c3a5603311d9ec352acd475fc7976f07df13ebbc96cf2d1a26ffb29aea4 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,081 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.21-cp39-cp39-linux_armv7l.whl#sha256=3e097c3a5603311d9ec352acd475fc7976f07df13ebbc96cf2d1a26ffb29aea4 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,081 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.23-cp37-cp37m-linux_armv6l.whl#sha256=dfa132fb060f51a72985e02dae2638ae2829971a908e8b293452a32cadea3c73 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,082 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.23-cp37-cp37m-linux_armv7l.whl#sha256=dfa132fb060f51a72985e02dae2638ae2829971a908e8b293452a32cadea3c73 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,082 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.23-cp39-cp39-linux_armv6l.whl#sha256=9249f4fde5ac945843483a63487bb05e5af7a7b127f83b74cfa72bcdd0f9b196 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,083 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.23-cp39-cp39-linux_armv7l.whl#sha256=9249f4fde5ac945843483a63487bb05e5af7a7b127f83b74cfa72bcdd0f9b196 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,083 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.24-cp37-cp37m-linux_armv6l.whl#sha256=fa74b1fd1a81e31e30495c53808c33d0305808a026f825100c43bc9001803407 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,084 Skipping link: No binaries permitted for pystospa: 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(from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,086 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.25-cp37-cp37m-linux_armv7l.whl#sha256=16cfbcc08fe2c2757081e879fae6294cff4c10850de508be8a26ac45fef50070 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,087 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.25-cp39-cp39-linux_armv6l.whl#sha256=0a15964ce179c6d17ccd578948334a6218777d344493fd51852e51534bd7e187 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,087 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.25-cp39-cp39-linux_armv7l.whl#sha256=0a15964ce179c6d17ccd578948334a6218777d344493fd51852e51534bd7e187 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,088 Skipping link: No binaries permitted for pystospa: 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(from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,090 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.28-cp35-cp35m-linux_armv6l.whl#sha256=40c546caca2c72b5317a3b8fa2d598918505ef80fb83f4dadb0b7e92f866b398 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,090 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.28-cp35-cp35m-linux_armv7l.whl#sha256=40c546caca2c72b5317a3b8fa2d598918505ef80fb83f4dadb0b7e92f866b398 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,091 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.28-cp37-cp37m-linux_armv6l.whl#sha256=d44e284b3180f90e0eacc69a260c8c2dec6fbc4411e558662731851b3022bf27 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,091 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.28-cp37-cp37m-linux_armv7l.whl#sha256=d44e284b3180f90e0eacc69a260c8c2dec6fbc4411e558662731851b3022bf27 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,092 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.28-cp39-cp39-linux_armv6l.whl#sha256=9eb5d00af23f22f7b148d7d786b3aef0b22f92732ac8e7ac3784522580116ee1 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,092 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.28-cp39-cp39-linux_armv7l.whl#sha256=9eb5d00af23f22f7b148d7d786b3aef0b22f92732ac8e7ac3784522580116ee1 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,093 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.29-cp35-cp35m-linux_armv6l.whl#sha256=26c6284f2b9065869188a575c84724272d649fc9143b899b9aabae5d169a1956 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,094 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.29-cp35-cp35m-linux_armv7l.whl#sha256=26c6284f2b9065869188a575c84724272d649fc9143b899b9aabae5d169a1956 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,094 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.29-cp37-cp37m-linux_armv6l.whl#sha256=a264c74923cf9f4e9452a27c74251e04752c5463f8cc95afd35ef4528c8064fa (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,095 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.29-cp37-cp37m-linux_armv7l.whl#sha256=a264c74923cf9f4e9452a27c74251e04752c5463f8cc95afd35ef4528c8064fa (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,095 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.29-cp39-cp39-linux_armv6l.whl#sha256=4e8631808c49c69213654cf9c88571845c38973afe5a0ad2d8ee609f2eddf103 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,096 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.29-cp39-cp39-linux_armv7l.whl#sha256=4e8631808c49c69213654cf9c88571845c38973afe5a0ad2d8ee609f2eddf103 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,097 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.30-cp35-cp35m-linux_armv6l.whl#sha256=9781edd7b8071d93056e4dd97d58f24c0923a56d258d22c0f0cc860632d22c8b (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,097 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.30-cp35-cp35m-linux_armv7l.whl#sha256=9781edd7b8071d93056e4dd97d58f24c0923a56d258d22c0f0cc860632d22c8b (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,097 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.30-cp37-cp37m-linux_armv6l.whl#sha256=97be594e096e39d7814f16e32471fa6da045df6788611ba252052a7042047576 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,098 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.30-cp37-cp37m-linux_armv7l.whl#sha256=97be594e096e39d7814f16e32471fa6da045df6788611ba252052a7042047576 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,098 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.30-cp39-cp39-linux_armv6l.whl#sha256=4f162e57a374f19b99ae7f628e728b90ce714818072cc98315ff813332249310 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,099 Skipping link: No binaries permitted for pystospa: https://www.piwheels.org/simple/pystospa/pystospa-2.0.30-cp39-cp39-linux_armv7l.whl#sha256=4f162e57a374f19b99ae7f628e728b90ce714818072cc98315ff813332249310 (from https://www.piwheels.org/simple/pystospa/) 2023-09-12T14:56:24,099 Skipping link: not a file: https://www.piwheels.org/simple/pystospa/ 2023-09-12T14:56:24,100 Skipping link: not a file: https://pypi.org/simple/pystospa/ 2023-09-12T14:56:24,119 Given no hashes to check 1 links for project 'pystospa': discarding no candidates 2023-09-12T14:56:24,137 Collecting pystospa==2.0.28 2023-09-12T14:56:24,140 Created temporary directory: /tmp/pip-unpack-bxc0qjqg 2023-09-12T14:56:24,430 Downloading pystospa-2.0.28.tar.gz (752 kB) 2023-09-12T14:56:25,353 Added pystospa==2.0.28 from https://files.pythonhosted.org/packages/fe/a9/557434aa9f673aa47828bde1abd7d3f38bbf3a7fc1dfd621953c8ec8b956/pystospa-2.0.28.tar.gz to build tracker '/tmp/pip-build-tracker-biecv6pm' 2023-09-12T14:56:25,355 Running setup.py (path:/tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/setup.py) egg_info for package pystospa 2023-09-12T14:56:25,355 Created temporary directory: /tmp/pip-pip-egg-info-g5nrfa7g 2023-09-12T14:56:25,356 Preparing metadata (setup.py): started 2023-09-12T14:56:25,358 Running command python setup.py egg_info 2023-09-12T14:56:26,356 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-12T14:56:26,356 !! 2023-09-12T14:56:26,358 ******************************************************************************** 2023-09-12T14:56:26,358 Usage of dash-separated 'description-file' will not be supported in future 2023-09-12T14:56:26,359 versions. Please use the underscore name 'description_file' instead. 2023-09-12T14:56:26,360 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-12T14:56:26,360 or your builds will no longer be supported. 2023-09-12T14:56:26,362 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-12T14:56:26,362 ******************************************************************************** 2023-09-12T14:56:26,363 !! 2023-09-12T14:56:26,364 opt = self.warn_dash_deprecation(opt, section) 2023-09-12T14:56:26,399 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-12T14:56:26,400 !! 2023-09-12T14:56:26,401 ******************************************************************************** 2023-09-12T14:56:26,401 Requirements should be satisfied by a PEP 517 installer. 2023-09-12T14:56:26,402 If you are using pip, you can try `pip install --use-pep517`. 2023-09-12T14:56:26,402 ******************************************************************************** 2023-09-12T14:56:26,403 !! 2023-09-12T14:56:26,403 dist.fetch_build_eggs(dist.setup_requires) 2023-09-12T14:56:36,035 /usr/local/lib/python3.11/dist-packages/setuptools/installer.py:44: UserWarning: Module cmake was already imported from None, but /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/.eggs/cmake-3.27.4.1-py3.11-linux-armv7l.egg is being added to sys.path 2023-09-12T14:56:36,035 pkg_resources.working_set.add(dist, replace=True) 2023-09-12T14:56:36,119 running egg_info 2023-09-12T14:56:36,120 creating /tmp/pip-pip-egg-info-g5nrfa7g/pystospa.egg-info 2023-09-12T14:56:36,145 writing /tmp/pip-pip-egg-info-g5nrfa7g/pystospa.egg-info/PKG-INFO 2023-09-12T14:56:36,148 writing dependency_links to /tmp/pip-pip-egg-info-g5nrfa7g/pystospa.egg-info/dependency_links.txt 2023-09-12T14:56:36,150 writing top-level names to /tmp/pip-pip-egg-info-g5nrfa7g/pystospa.egg-info/top_level.txt 2023-09-12T14:56:36,151 writing manifest file '/tmp/pip-pip-egg-info-g5nrfa7g/pystospa.egg-info/SOURCES.txt' 2023-09-12T14:56:36,180 reading manifest file '/tmp/pip-pip-egg-info-g5nrfa7g/pystospa.egg-info/SOURCES.txt' 2023-09-12T14:56:36,181 adding license file 'LICENCE' 2023-09-12T14:56:36,183 writing manifest file '/tmp/pip-pip-egg-info-g5nrfa7g/pystospa.egg-info/SOURCES.txt' 2023-09-12T14:56:36,307 Preparing metadata (setup.py): finished with status 'done' 2023-09-12T14:56:36,311 Source in /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c has version 2.0.28, which satisfies requirement pystospa==2.0.28 from https://files.pythonhosted.org/packages/fe/a9/557434aa9f673aa47828bde1abd7d3f38bbf3a7fc1dfd621953c8ec8b956/pystospa-2.0.28.tar.gz 2023-09-12T14:56:36,312 Removed pystospa==2.0.28 from https://files.pythonhosted.org/packages/fe/a9/557434aa9f673aa47828bde1abd7d3f38bbf3a7fc1dfd621953c8ec8b956/pystospa-2.0.28.tar.gz from build tracker '/tmp/pip-build-tracker-biecv6pm' 2023-09-12T14:56:36,315 Created temporary directory: /tmp/pip-unpack-d_j7qo46 2023-09-12T14:56:36,317 Created temporary directory: /tmp/pip-unpack-uahmy4_r 2023-09-12T14:56:36,319 Building wheels for collected packages: pystospa 2023-09-12T14:56:36,323 Created temporary directory: /tmp/pip-wheel-4b5jg31z 2023-09-12T14:56:36,324 Building wheel for pystospa (setup.py): started 2023-09-12T14:56:36,325 Destination directory: /tmp/pip-wheel-4b5jg31z 2023-09-12T14:56:36,326 Running command python setup.py bdist_wheel 2023-09-12T14:56:37,328 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-12T14:56:37,328 !! 2023-09-12T14:56:37,329 ******************************************************************************** 2023-09-12T14:56:37,330 Usage of dash-separated 'description-file' will not be supported in future 2023-09-12T14:56:37,330 versions. Please use the underscore name 'description_file' instead. 2023-09-12T14:56:37,332 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-12T14:56:37,332 or your builds will no longer be supported. 2023-09-12T14:56:37,333 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-12T14:56:37,334 ******************************************************************************** 2023-09-12T14:56:37,335 !! 2023-09-12T14:56:37,336 opt = self.warn_dash_deprecation(opt, section) 2023-09-12T14:56:37,414 /usr/local/lib/python3.11/dist-packages/skbuild/setuptools_wrap.py:617: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-12T14:56:37,415 !! 2023-09-12T14:56:37,415 ******************************************************************************** 2023-09-12T14:56:37,416 Requirements should be satisfied by a PEP 517 installer. 2023-09-12T14:56:37,416 If you are using pip, you can try `pip install --use-pep517`. 2023-09-12T14:56:37,417 ******************************************************************************** 2023-09-12T14:56:37,417 !! 2023-09-12T14:56:37,418 dist.fetch_build_eggs(setup_requires) 2023-09-12T14:56:37,573 /usr/local/lib/python3.11/dist-packages/setuptools/installer.py:44: UserWarning: Module cmake was already imported from None, but /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/.eggs/cmake-3.27.4.1-py3.11-linux-armv7l.egg is being added to sys.path 2023-09-12T14:56:37,574 pkg_resources.working_set.add(dist, replace=True) 2023-09-12T14:56:37,642 -------------------------------------------------------------------------------- 2023-09-12T14:56:37,643 -- Trying 'Ninja' generator 2023-09-12T14:56:37,643 -------------------------------- 2023-09-12T14:56:37,644 --------------------------- 2023-09-12T14:56:37,644 ---------------------- 2023-09-12T14:56:37,645 ----------------- 2023-09-12T14:56:37,645 ------------ 2023-09-12T14:56:37,646 ------- 2023-09-12T14:56:37,646 -- 2023-09-12T14:56:37,684 Not searching for unused variables given on the command line. 2023-09-12T14:56:37,974 -- The C compiler identification is GNU 12.2.0 2023-09-12T14:56:38,015 -- Detecting C compiler ABI info 2023-09-12T14:56:38,271 -- Detecting C compiler ABI info - done 2023-09-12T14:56:38,313 -- Check for working C compiler: /usr/bin/cc - skipped 2023-09-12T14:56:38,315 -- Detecting C compile features 2023-09-12T14:56:38,317 -- Detecting C compile features - done 2023-09-12T14:56:38,613 -- The CXX compiler identification is GNU 12.2.0 2023-09-12T14:56:38,650 -- Detecting CXX compiler ABI info 2023-09-12T14:56:39,003 -- Detecting CXX compiler ABI info - done 2023-09-12T14:56:39,047 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-09-12T14:56:39,048 -- Detecting CXX compile features 2023-09-12T14:56:39,051 -- Detecting CXX compile features - done 2023-09-12T14:56:39,057 -- Configuring done 2023-09-12T14:56:39,065 -- Generating done 2023-09-12T14:56:39,091 -- Build files have been written to: /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/_cmake_test_compile/build 2023-09-12T14:56:39,100 -- 2023-09-12T14:56:39,101 ------- 2023-09-12T14:56:39,101 ------------ 2023-09-12T14:56:39,102 ----------------- 2023-09-12T14:56:39,102 ---------------------- 2023-09-12T14:56:39,103 --------------------------- 2023-09-12T14:56:39,103 -------------------------------- 2023-09-12T14:56:39,104 -- Trying 'Ninja' generator - success 2023-09-12T14:56:39,104 -------------------------------------------------------------------------------- 2023-09-12T14:56:39,136 Configuring Project 2023-09-12T14:56:39,137 Working directory: 2023-09-12T14:56:39,138 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/_skbuild/linux-armv7l-3.11/cmake-build 2023-09-12T14:56:39,138 Command: 2023-09-12T14:56:39,139 /usr/bin/cmake /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c -G Ninja --no-warn-unused-cli -DCMAKE_INSTALL_PREFIX:PATH=/tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/_skbuild/linux-armv7l-3.11/cmake-install -DPYTHON_VERSION_STRING:STRING=3.11.2 -DSKBUILD:INTERNAL=TRUE -DCMAKE_MODULE_PATH:PATH=/usr/local/lib/python3.11/dist-packages/skbuild/resources/cmake -DPYTHON_EXECUTABLE:PATH=/usr/bin/python3 -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.11 -DPYTHON_LIBRARY:PATH=/usr/lib/arm-linux-gnueabihf/libpython3.11.so -DPython_EXECUTABLE:PATH=/usr/bin/python3 -DPython_ROOT_DIR:PATH=/usr -DPython_FIND_REGISTRY:STRING=NEVER -DPython_INCLUDE_DIR:PATH=/usr/include/python3.11 -DPython3_EXECUTABLE:PATH=/usr/bin/python3 -DPython3_ROOT_DIR:PATH=/usr -DPython3_FIND_REGISTRY:STRING=NEVER -DPython3_INCLUDE_DIR:PATH=/usr/include/python3.11 -DCMAKE_BUILD_TYPE:STRING=Release 2023-09-12T14:56:39,180 Not searching for unused variables given on the command line. 2023-09-12T14:56:39,488 -- The CXX compiler identification is GNU 12.2.0 2023-09-12T14:56:39,549 -- Detecting CXX compiler ABI info 2023-09-12T14:56:39,890 -- Detecting CXX compiler ABI info - done 2023-09-12T14:56:39,928 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-09-12T14:56:39,930 -- Detecting CXX compile features 2023-09-12T14:56:39,932 -- Detecting CXX compile features - done 2023-09-12T14:56:39,943 -- Project version: 2.0.28 2023-09-12T14:56:39,943 -- CMAKE_BUILD_TYPE: Release 2023-09-12T14:56:39,944 -- CMAKE_CXX_FLAGS: -O3 -DNDEBUG 2023-09-12T14:56:39,966 -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 2023-09-12T14:56:39,973 -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE) 2023-09-12T14:56:40,068 -- Found PythonInterp: /usr/bin/python3 (found version "3.11.2") 2023-09-12T14:56:40,771 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.11.so 2023-09-12T14:56:40,797 -- pybind11 v2.4.dev4 2023-09-12T14:56:40,808 -- Performing Test HAS_FLTO 2023-09-12T14:56:41,653 -- Performing Test HAS_FLTO - Success 2023-09-12T14:56:41,655 -- LTO enabled 2023-09-12T14:56:41,662 -- Configuring done 2023-09-12T14:56:41,722 -- Generating done 2023-09-12T14:56:41,751 -- Build files have been written to: /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/_skbuild/linux-armv7l-3.11/cmake-build 2023-09-12T14:56:51,907 [1/15] Building CXX object examples/CMakeFiles/cme_example.dir/cme_example.cpp.o 2023-09-12T14:56:51,908 In file included from /usr/include/c++/12/vector:70, 2023-09-12T14:56:51,909 from /usr/include/c++/12/bits/random.h:34, 2023-09-12T14:56:51,910 from /usr/include/c++/12/random:49, 2023-09-12T14:56:51,911 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/simulator.hpp:10, 2023-09-12T14:56:51,912 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/examples/cme_example.cpp:2: 2023-09-12T14:56:51,913 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-12T14:56:51,914 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-12T14:56:51,915 439 | vector<_Tp, _Alloc>:: 2023-09-12T14:56:51,916 | ^~~~~~~~~~~~~~~~~~~ 2023-09-12T14:56:51,917 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const StoSpa2::Reaction&}; _Tp = StoSpa2::Reaction; _Alloc = std::allocator]’: 2023-09-12T14:56:51,918 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-12T14:56:51,919 In file included from /usr/include/c++/12/vector:64: 2023-09-12T14:56:51,920 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = StoSpa2::Reaction; _Alloc = std::allocator]’, 2023-09-12T14:56:51,921 inlined from ‘void StoSpa2::Voxel::add_reaction(StoSpa2::Reaction)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/voxel.hpp:208:34: 2023-09-12T14:56:51,922 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-12T14:56:51,923 1287 | _M_realloc_insert(end(), __x); 2023-09-12T14:56:51,925 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-12T14:56:51,926 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’, 2023-09-12T14:56:51,927 inlined from ‘void StoSpa2::Simulator::initialise_next_reaction_times()’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/simulator.hpp:74:38, 2023-09-12T14:56:51,928 inlined from ‘StoSpa2::Simulator::Simulator(std::vector)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/simulator.hpp:111:39, 2023-09-12T14:56:51,929 inlined from ‘int main()’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/examples/cme_example.cpp:21:29: 2023-09-12T14:56:51,929 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-12T14:56:51,930 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-12T14:56:51,931 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-12T14:56:52,940 [2/15] Linking CXX executable examples/cme_example 2023-09-12T14:56:54,585 [3/15] Building CXX object benchmarks/CMakeFiles/benchmark_cme.dir/benchmark_cme.cpp.o 2023-09-12T14:56:54,586 In file included from /usr/include/c++/12/vector:70, 2023-09-12T14:56:54,587 from /usr/include/c++/12/bits/random.h:34, 2023-09-12T14:56:54,588 from /usr/include/c++/12/random:49, 2023-09-12T14:56:54,589 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/simulator.hpp:10, 2023-09-12T14:56:54,590 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/benchmarks/benchmark_cme.cpp:3: 2023-09-12T14:56:54,591 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-12T14:56:54,592 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-12T14:56:54,594 439 | vector<_Tp, _Alloc>:: 2023-09-12T14:56:54,595 | ^~~~~~~~~~~~~~~~~~~ 2023-09-12T14:56:54,596 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const StoSpa2::Reaction&}; _Tp = StoSpa2::Reaction; _Alloc = std::allocator]’: 2023-09-12T14:56:54,597 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-12T14:56:54,598 In file included from /usr/include/c++/12/vector:64: 2023-09-12T14:56:54,599 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = StoSpa2::Reaction; _Alloc = std::allocator]’, 2023-09-12T14:56:54,600 inlined from ‘void StoSpa2::Voxel::add_reaction(StoSpa2::Reaction)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/voxel.hpp:208:34: 2023-09-12T14:56:54,601 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-12T14:56:54,602 1287 | _M_realloc_insert(end(), __x); 2023-09-12T14:56:54,603 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-12T14:56:54,604 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’, 2023-09-12T14:56:54,605 inlined from ‘void StoSpa2::Simulator::initialise_next_reaction_times()’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/simulator.hpp:74:38, 2023-09-12T14:56:54,606 inlined from ‘StoSpa2::Simulator::Simulator(std::vector)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/simulator.hpp:111:39, 2023-09-12T14:56:54,607 inlined from ‘int main(int, char**)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/benchmarks/benchmark_cme.cpp:26:32: 2023-09-12T14:56:54,608 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-12T14:56:54,609 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-12T14:56:54,610 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-12T14:56:54,959 [4/15] Building CXX object benchmarks/CMakeFiles/benchmark_schnakenberg.dir/benchmark_schnakenberg.cpp.o 2023-09-12T14:56:54,960 In file included from /usr/include/c++/12/vector:70, 2023-09-12T14:56:54,961 from /usr/include/c++/12/bits/random.h:34, 2023-09-12T14:56:54,962 from /usr/include/c++/12/random:49, 2023-09-12T14:56:54,963 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/simulator.hpp:10, 2023-09-12T14:56:54,964 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/benchmarks/benchmark_schnakenberg.cpp:3: 2023-09-12T14:56:54,965 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-12T14:56:54,965 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-12T14:56:54,966 439 | vector<_Tp, _Alloc>:: 2023-09-12T14:56:54,967 | ^~~~~~~~~~~~~~~~~~~ 2023-09-12T14:56:54,968 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const StoSpa2::Reaction&}; _Tp = StoSpa2::Reaction; _Alloc = std::allocator]’: 2023-09-12T14:56:54,969 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-12T14:56:54,971 In file included from /usr/include/c++/12/vector:64: 2023-09-12T14:56:54,972 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = StoSpa2::Reaction; _Alloc = std::allocator]’, 2023-09-12T14:56:54,973 inlined from ‘void StoSpa2::Voxel::add_reaction(StoSpa2::Reaction)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/voxel.hpp:208:34: 2023-09-12T14:56:54,974 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-12T14:56:54,975 1287 | _M_realloc_insert(end(), __x); 2023-09-12T14:56:54,976 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-12T14:56:54,977 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’, 2023-09-12T14:56:54,978 inlined from ‘void StoSpa2::Simulator::initialise_next_reaction_times()’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/simulator.hpp:74:38, 2023-09-12T14:56:54,979 inlined from ‘StoSpa2::Simulator::Simulator(std::vector)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/simulator.hpp:111:39, 2023-09-12T14:56:54,980 inlined from ‘int main(int, char**)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/benchmarks/benchmark_schnakenberg.cpp:49:29: 2023-09-12T14:56:54,981 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-12T14:56:54,982 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-12T14:56:54,983 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-12T14:56:55,440 [5/15] Linking CXX executable benchmarks/benchmark_cme 2023-09-12T14:56:55,612 [6/15] Linking CXX executable benchmarks/benchmark_schnakenberg 2023-09-12T14:56:57,198 [7/15] Building CXX object benchmarks/CMakeFiles/benchmark_diffusion.dir/benchmark_diffusion.cpp.o 2023-09-12T14:56:57,198 In file included from /usr/include/c++/12/vector:70, 2023-09-12T14:56:57,199 from /usr/include/c++/12/bits/random.h:34, 2023-09-12T14:56:57,200 from /usr/include/c++/12/random:49, 2023-09-12T14:56:57,200 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/simulator.hpp:10, 2023-09-12T14:56:57,201 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/benchmarks/benchmark_diffusion.cpp:3: 2023-09-12T14:56:57,202 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-12T14:56:57,203 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-12T14:56:57,204 439 | vector<_Tp, _Alloc>:: 2023-09-12T14:56:57,205 | ^~~~~~~~~~~~~~~~~~~ 2023-09-12T14:56:57,206 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {StoSpa2::Voxel}; _Tp = StoSpa2::Voxel; _Alloc = std::allocator]’: 2023-09-12T14:56:57,207 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-12T14:56:57,208 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = StoSpa2::Voxel; _Alloc = std::allocator]’: 2023-09-12T14:56:57,209 /usr/include/c++/12/bits/vector.tcc:350:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2023-09-12T14:56:57,210 350 | vector<_Tp, _Alloc>:: 2023-09-12T14:56:57,211 | ^~~~~~~~~~~~~~~~~~~ 2023-09-12T14:56:57,212 /usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-12T14:56:57,213 366 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-09-12T14:56:57,214 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-12T14:56:57,215 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const StoSpa2::Reaction&}; _Tp = StoSpa2::Reaction; _Alloc = std::allocator]’: 2023-09-12T14:56:57,216 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-12T14:56:57,217 439 | vector<_Tp, _Alloc>:: 2023-09-12T14:56:57,218 | ^~~~~~~~~~~~~~~~~~~ 2023-09-12T14:56:57,219 In file included from /usr/include/c++/12/vector:64: 2023-09-12T14:56:57,220 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = StoSpa2::Voxel; _Alloc = std::allocator]’, 2023-09-12T14:56:57,221 inlined from ‘int main(int, char**)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/benchmarks/benchmark_diffusion.cpp:12:14: 2023-09-12T14:56:57,222 /usr/include/c++/12/bits/stl_vector.h:1389:30: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2023-09-12T14:56:57,223 1389 | { return _M_insert_rval(__position, std::move(__x)); } 2023-09-12T14:56:57,224 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-12T14:56:57,225 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = StoSpa2::Reaction; _Alloc = std::allocator]’, 2023-09-12T14:56:57,225 inlined from ‘void StoSpa2::Voxel::add_reaction(StoSpa2::Reaction)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/voxel.hpp:208:34, 2023-09-12T14:56:57,226 inlined from ‘int main(int, char**)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/benchmarks/benchmark_diffusion.cpp:16:27: 2023-09-12T14:56:57,227 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-12T14:56:57,228 1287 | _M_realloc_insert(end(), __x); 2023-09-12T14:56:57,229 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-12T14:56:57,229 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = StoSpa2::Reaction; _Alloc = std::allocator]’, 2023-09-12T14:56:57,230 inlined from ‘void StoSpa2::Voxel::add_reaction(StoSpa2::Reaction)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/voxel.hpp:208:34, 2023-09-12T14:56:57,231 inlined from ‘int main(int, char**)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/benchmarks/benchmark_diffusion.cpp:17:29: 2023-09-12T14:56:57,232 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-12T14:56:57,233 1287 | _M_realloc_insert(end(), __x); 2023-09-12T14:56:57,234 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-12T14:56:57,235 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’, 2023-09-12T14:56:57,236 inlined from ‘void StoSpa2::Simulator::initialise_next_reaction_times()’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/simulator.hpp:74:38, 2023-09-12T14:56:57,237 inlined from ‘StoSpa2::Simulator::Simulator(std::vector)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/simulator.hpp:111:39, 2023-09-12T14:56:57,240 inlined from ‘int main(int, char**)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/benchmarks/benchmark_diffusion.cpp:30:29: 2023-09-12T14:56:57,240 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-12T14:56:57,241 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-12T14:56:57,242 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-12T14:56:57,589 [8/15] Linking CXX executable benchmarks/benchmark_diffusion 2023-09-12T14:57:00,861 [9/15] Building CXX object pystospa/CMakeFiles/pystospa.dir/src/pystospa.cpp.o 2023-09-12T14:57:00,861 FAILED: pystospa/CMakeFiles/pystospa.dir/src/pystospa.cpp.o 2023-09-12T14:57:00,862 /usr/bin/c++ -Dpystospa_EXPORTS -I/tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src -I/tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pystospa/src -I/tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include -I/usr/include/python3.11 -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=gnu++14 -MD -MT pystospa/CMakeFiles/pystospa.dir/src/pystospa.cpp.o -MF pystospa/CMakeFiles/pystospa.dir/src/pystospa.cpp.o.d -o pystospa/CMakeFiles/pystospa.dir/src/pystospa.cpp.o -c /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pystospa/src/pystospa.cpp 2023-09-12T14:57:00,863 In file included from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/cast.h:16, 2023-09-12T14:57:00,864 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/attr.h:13, 2023-09-12T14:57:00,865 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/pybind11.h:44, 2023-09-12T14:57:00,866 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pystospa/src/pystospa.cpp:3: 2023-09-12T14:57:00,867 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/detail/internals.h: In function ‘pybind11::detail::internals& pybind11::detail::get_internals()’: 2023-09-12T14:57:00,867 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/detail/internals.h:276:27: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations] 2023-09-12T14:57:00,868 276 | PyEval_InitThreads(); 2023-09-12T14:57:00,869 | ~~~~~~~~~~~~~~~~~~^~ 2023-09-12T14:57:00,870 In file included from /usr/include/python3.11/Python.h:95, 2023-09-12T14:57:00,870 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/detail/common.h:112, 2023-09-12T14:57:00,871 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/pytypes.h:12, 2023-09-12T14:57:00,872 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/cast.h:13: 2023-09-12T14:57:00,873 /usr/include/python3.11/ceval.h:132:37: note: declared here 2023-09-12T14:57:00,874 132 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); 2023-09-12T14:57:00,875 | ^~~~~~~~~~~~~~~~~~ 2023-09-12T14:57:00,876 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/cast.h: In function ‘std::string pybind11::detail::error_string()’: 2023-09-12T14:57:00,876 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/cast.h:446:36: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-12T14:57:00,877 446 | " " + handle(frame->f_code->co_filename).cast() + 2023-09-12T14:57:00,878 | ^~ 2023-09-12T14:57:00,879 In file included from /usr/include/python3.11/Python.h:42: 2023-09-12T14:57:00,880 /usr/include/python3.11/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-12T14:57:00,880 22 | typedef struct _frame PyFrameObject; 2023-09-12T14:57:00,881 | ^~~~~~ 2023-09-12T14:57:00,882 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/cast.h:446:75: error: expected primary-expression before ‘>’ token 2023-09-12T14:57:00,883 446 | " " + handle(frame->f_code->co_filename).cast() + 2023-09-12T14:57:00,883 | ^ 2023-09-12T14:57:00,884 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/cast.h:446:77: error: expected primary-expression before ‘)’ token 2023-09-12T14:57:00,885 446 | " " + handle(frame->f_code->co_filename).cast() + 2023-09-12T14:57:00,886 | ^ 2023-09-12T14:57:00,887 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/cast.h:448:29: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-12T14:57:00,888 448 | handle(frame->f_code->co_name).cast() + "\n"; 2023-09-12T14:57:00,888 | ^~ 2023-09-12T14:57:00,889 /usr/include/python3.11/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-12T14:57:00,890 22 | typedef struct _frame PyFrameObject; 2023-09-12T14:57:00,890 | ^~~~~~ 2023-09-12T14:57:00,891 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/cast.h:448:64: error: expected primary-expression before ‘>’ token 2023-09-12T14:57:00,891 448 | handle(frame->f_code->co_name).cast() + "\n"; 2023-09-12T14:57:00,892 | ^ 2023-09-12T14:57:00,893 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/cast.h:448:66: error: expected primary-expression before ‘)’ token 2023-09-12T14:57:00,893 448 | handle(frame->f_code->co_name).cast() + "\n"; 2023-09-12T14:57:00,894 | ^ 2023-09-12T14:57:00,895 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/cast.h:449:26: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-12T14:57:00,895 449 | frame = frame->f_back; 2023-09-12T14:57:00,896 | ^~ 2023-09-12T14:57:00,897 /usr/include/python3.11/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-12T14:57:00,898 22 | typedef struct _frame PyFrameObject; 2023-09-12T14:57:00,899 | ^~~~~~ 2023-09-12T14:57:00,900 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::function pybind11::get_type_overload(const void*, const detail::type_info*, const char*)’: 2023-09-12T14:57:00,901 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/pybind11.h:2053:49: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘frame’; did you mean ‘cframe’? 2023-09-12T14:57:00,902 2053 | PyFrameObject *frame = PyThreadState_Get()->frame; 2023-09-12T14:57:00,903 | ^~~~~ 2023-09-12T14:57:00,904 | cframe 2023-09-12T14:57:00,905 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/pybind11.h:2054:41: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-12T14:57:00,905 2054 | if (frame && (std::string) str(frame->f_code->co_name) == name && 2023-09-12T14:57:00,906 | ^~ 2023-09-12T14:57:00,907 /usr/include/python3.11/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-12T14:57:00,908 22 | typedef struct _frame PyFrameObject; 2023-09-12T14:57:00,909 | ^~~~~~ 2023-09-12T14:57:00,909 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/pybind11.h:2055:14: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-12T14:57:00,910 2055 | frame->f_code->co_argcount > 0) { 2023-09-12T14:57:00,911 | ^~ 2023-09-12T14:57:00,912 /usr/include/python3.11/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-12T14:57:00,913 22 | typedef struct _frame PyFrameObject; 2023-09-12T14:57:00,914 | ^~~~~~ 2023-09-12T14:57:00,914 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/pybind11.h:2058:18: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-12T14:57:00,915 2058 | frame->f_locals, PyTuple_GET_ITEM(frame->f_code->co_varnames, 0)); 2023-09-12T14:57:00,916 | ^~ 2023-09-12T14:57:00,916 /usr/include/python3.11/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-12T14:57:00,917 22 | typedef struct _frame PyFrameObject; 2023-09-12T14:57:00,918 | ^~~~~~ 2023-09-12T14:57:00,919 In file included from /usr/include/python3.11/Python.h:38: 2023-09-12T14:57:00,919 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/pybind11.h:2058:52: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-12T14:57:00,920 2058 | frame->f_locals, PyTuple_GET_ITEM(frame->f_code->co_varnames, 0)); 2023-09-12T14:57:00,921 | ^~ 2023-09-12T14:57:00,921 /usr/include/python3.11/pyport.h:24:38: note: in definition of macro ‘_Py_CAST’ 2023-09-12T14:57:00,922 24 | #define _Py_CAST(type, expr) ((type)(expr)) 2023-09-12T14:57:00,923 | ^~~~ 2023-09-12T14:57:00,923 /usr/include/python3.11/cpython/tupleobject.h:30:38: note: in expansion of macro ‘_PyTuple_CAST’ 2023-09-12T14:57:00,924 30 | #define PyTuple_GET_ITEM(op, index) (_PyTuple_CAST(op)->ob_item[index]) 2023-09-12T14:57:00,925 | ^~~~~~~~~~~~~ 2023-09-12T14:57:00,926 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/pybind11/include/pybind11/pybind11.h:2058:30: note: in expansion of macro ‘PyTuple_GET_ITEM’ 2023-09-12T14:57:00,927 2058 | frame->f_locals, PyTuple_GET_ITEM(frame->f_code->co_varnames, 0)); 2023-09-12T14:57:00,928 | ^~~~~~~~~~~~~~~~ 2023-09-12T14:57:00,929 /usr/include/python3.11/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-12T14:57:00,930 22 | typedef struct _frame PyFrameObject; 2023-09-12T14:57:00,930 | ^~~~~~ 2023-09-12T14:57:02,495 [10/15] Building CXX object examples/CMakeFiles/rdme_example.dir/rdme_example.cpp.o 2023-09-12T14:57:02,496 In file included from /usr/include/c++/12/vector:70, 2023-09-12T14:57:02,497 from /usr/include/c++/12/bits/random.h:34, 2023-09-12T14:57:02,497 from /usr/include/c++/12/random:49, 2023-09-12T14:57:02,498 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/simulator.hpp:10, 2023-09-12T14:57:02,499 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/examples/rdme_example.cpp:2: 2023-09-12T14:57:02,499 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-12T14:57:02,500 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-12T14:57:02,501 439 | vector<_Tp, _Alloc>:: 2023-09-12T14:57:02,501 | ^~~~~~~~~~~~~~~~~~~ 2023-09-12T14:57:02,502 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {StoSpa2::Voxel}; _Tp = StoSpa2::Voxel; _Alloc = std::allocator]’: 2023-09-12T14:57:02,503 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-12T14:57:02,504 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = StoSpa2::Voxel; _Alloc = std::allocator]’: 2023-09-12T14:57:02,505 /usr/include/c++/12/bits/vector.tcc:350:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2023-09-12T14:57:02,505 350 | vector<_Tp, _Alloc>:: 2023-09-12T14:57:02,506 | ^~~~~~~~~~~~~~~~~~~ 2023-09-12T14:57:02,506 /usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-12T14:57:02,507 366 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-09-12T14:57:02,507 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-12T14:57:02,508 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const StoSpa2::Reaction&}; _Tp = StoSpa2::Reaction; _Alloc = std::allocator]’: 2023-09-12T14:57:02,508 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-12T14:57:02,509 439 | vector<_Tp, _Alloc>:: 2023-09-12T14:57:02,510 | ^~~~~~~~~~~~~~~~~~~ 2023-09-12T14:57:02,510 In file included from /usr/include/c++/12/vector:64: 2023-09-12T14:57:02,511 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = StoSpa2::Voxel; _Alloc = std::allocator]’, 2023-09-12T14:57:02,511 inlined from ‘int main()’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/examples/rdme_example.cpp:14:14: 2023-09-12T14:57:02,512 /usr/include/c++/12/bits/stl_vector.h:1389:30: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2023-09-12T14:57:02,513 1389 | { return _M_insert_rval(__position, std::move(__x)); } 2023-09-12T14:57:02,513 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-12T14:57:02,514 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = StoSpa2::Reaction; _Alloc = std::allocator]’, 2023-09-12T14:57:02,515 inlined from ‘void StoSpa2::Voxel::add_reaction(StoSpa2::Reaction)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/voxel.hpp:208:34, 2023-09-12T14:57:02,516 inlined from ‘int main()’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/examples/rdme_example.cpp:22:27: 2023-09-12T14:57:02,516 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-12T14:57:02,517 1287 | _M_realloc_insert(end(), __x); 2023-09-12T14:57:02,518 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-12T14:57:02,518 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = StoSpa2::Reaction; _Alloc = std::allocator]’, 2023-09-12T14:57:02,519 inlined from ‘void StoSpa2::Voxel::add_reaction(StoSpa2::Reaction)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/voxel.hpp:208:34, 2023-09-12T14:57:02,520 inlined from ‘int main()’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/examples/rdme_example.cpp:24:29: 2023-09-12T14:57:02,520 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-12T14:57:02,521 1287 | _M_realloc_insert(end(), __x); 2023-09-12T14:57:02,522 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-12T14:57:02,523 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’, 2023-09-12T14:57:02,523 inlined from ‘void StoSpa2::Simulator::initialise_next_reaction_times()’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/simulator.hpp:74:38, 2023-09-12T14:57:02,524 inlined from ‘StoSpa2::Simulator::Simulator(std::vector)’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src/simulator.hpp:111:39, 2023-09-12T14:57:02,524 inlined from ‘int main()’ at /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/examples/rdme_example.cpp:28:19: 2023-09-12T14:57:02,525 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-12T14:57:02,525 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-12T14:57:02,526 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-12T14:57:03,230 [11/15] Building CXX object tests/CMakeFiles/unittests.dir/unittests.cpp.o 2023-09-12T14:57:03,231 FAILED: tests/CMakeFiles/unittests.dir/unittests.cpp.o 2023-09-12T14:57:03,232 /usr/bin/c++ -I/tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/src -O3 -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -MD -MT tests/CMakeFiles/unittests.dir/unittests.cpp.o -MF tests/CMakeFiles/unittests.dir/unittests.cpp.o.d -o tests/CMakeFiles/unittests.dir/unittests.cpp.o -c /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/tests/unittests.cpp 2023-09-12T14:57:03,232 In file included from /usr/include/signal.h:328, 2023-09-12T14:57:03,233 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/tests/catch.hpp:7864, 2023-09-12T14:57:03,234 from /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/tests/unittests.cpp:4: 2023-09-12T14:57:03,235 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/tests/catch.hpp:10717:58: error: call to non-‘constexpr’ function ‘long int sysconf(int)’ 2023-09-12T14:57:03,235 10717 | static constexpr std::size_t sigStackSize = 32768 >= MINSIGSTKSZ ? 32768 : MINSIGSTKSZ; 2023-09-12T14:57:03,236 | ^~~~~~~~~~~ 2023-09-12T14:57:03,236 In file included from /usr/include/arm-linux-gnueabihf/bits/sigstksz.h:24: 2023-09-12T14:57:03,237 /usr/include/unistd.h:640:17: note: ‘long int sysconf(int)’ declared here 2023-09-12T14:57:03,238 640 | extern long int sysconf (int __name) __THROW; 2023-09-12T14:57:03,238 | ^~~~~~~ 2023-09-12T14:57:03,239 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/tests/catch.hpp:10776:45: error: size of array ‘altStackMem’ is not an integral constant-expression 2023-09-12T14:57:03,239 10776 | char FatalConditionHandler::altStackMem[sigStackSize] = {}; 2023-09-12T14:57:03,240 | ^~~~~~~~~~~~ 2023-09-12T14:57:03,241 ninja: build stopped: subcommand failed. 2023-09-12T14:57:03,242 Traceback (most recent call last): 2023-09-12T14:57:03,243 File "/usr/local/lib/python3.11/dist-packages/skbuild/setuptools_wrap.py", line 674, in setup 2023-09-12T14:57:03,244 cmkr.make(make_args, install_target=cmake_install_target, env=env) 2023-09-12T14:57:03,244 File "/usr/local/lib/python3.11/dist-packages/skbuild/cmaker.py", line 697, in make 2023-09-12T14:57:03,245 self.make_impl(clargs=clargs, config=config, source_dir=source_dir, install_target=install_target, env=env) 2023-09-12T14:57:03,246 File "/usr/local/lib/python3.11/dist-packages/skbuild/cmaker.py", line 742, in make_impl 2023-09-12T14:57:03,247 raise SKBuildError(msg) 2023-09-12T14:57:03,249 An error occurred while building with CMake. 2023-09-12T14:57:03,249 Command: 2023-09-12T14:57:03,250 /usr/bin/cmake --build . --target install --config Release -- 2023-09-12T14:57:03,251 Install target: 2023-09-12T14:57:03,251 install 2023-09-12T14:57:03,252 Source directory: 2023-09-12T14:57:03,253 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c 2023-09-12T14:57:03,253 Working directory: 2023-09-12T14:57:03,254 /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/_skbuild/linux-armv7l-3.11/cmake-build 2023-09-12T14:57:03,255 Please check the install target is valid and see CMake's output for more information. 2023-09-12T14:57:03,362 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-12T14:57:03,375 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-12T14:57:03,375 exec(compile('"'"''"'"''"'"' 2023-09-12T14:57:03,375 # This is -- a caller that pip uses to run setup.py 2023-09-12T14:57:03,375 # 2023-09-12T14:57:03,375 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-12T14:57:03,375 # import from `distutils.core` to work with newer packaging standards. 2023-09-12T14:57:03,375 # - It provides a clear error message when setuptools is not installed. 2023-09-12T14:57:03,375 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-12T14:57:03,375 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-12T14:57:03,375 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-12T14:57:03,375 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-12T14:57:03,375 import os, sys, tokenize 2023-09-12T14:57:03,375 2023-09-12T14:57:03,375 try: 2023-09-12T14:57:03,375 import setuptools 2023-09-12T14:57:03,375 except ImportError as error: 2023-09-12T14:57:03,375 print( 2023-09-12T14:57:03,375 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-12T14:57:03,375 "the build environment.", 2023-09-12T14:57:03,375 file=sys.stderr, 2023-09-12T14:57:03,375 ) 2023-09-12T14:57:03,375 sys.exit(1) 2023-09-12T14:57:03,375 2023-09-12T14:57:03,375 __file__ = %r 2023-09-12T14:57:03,375 sys.argv[0] = __file__ 2023-09-12T14:57:03,375 2023-09-12T14:57:03,375 if os.path.exists(__file__): 2023-09-12T14:57:03,375 filename = __file__ 2023-09-12T14:57:03,375 with tokenize.open(__file__) as f: 2023-09-12T14:57:03,375 setup_py_code = f.read() 2023-09-12T14:57:03,375 else: 2023-09-12T14:57:03,375 filename = "" 2023-09-12T14:57:03,375 setup_py_code = "from setuptools import setup; setup()" 2023-09-12T14:57:03,375 2023-09-12T14:57:03,375 exec(compile(setup_py_code, filename, "exec")) 2023-09-12T14:57:03,375 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-4b5jg31z[/] 2023-09-12T14:57:03,376 [bold magenta]cwd[/]: /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/ 2023-09-12T14:57:03,376 Building wheel for pystospa (setup.py): finished with status 'error' 2023-09-12T14:57:03,377 ERROR: Failed building wheel for pystospa 2023-09-12T14:57:03,379 Running setup.py clean for pystospa 2023-09-12T14:57:03,380 Running command python setup.py clean 2023-09-12T14:57:04,385 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-12T14:57:04,385 !! 2023-09-12T14:57:04,386 ******************************************************************************** 2023-09-12T14:57:04,387 Usage of dash-separated 'description-file' will not be supported in future 2023-09-12T14:57:04,388 versions. Please use the underscore name 'description_file' instead. 2023-09-12T14:57:04,389 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-12T14:57:04,389 or your builds will no longer be supported. 2023-09-12T14:57:04,390 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-12T14:57:04,391 ******************************************************************************** 2023-09-12T14:57:04,391 !! 2023-09-12T14:57:04,392 opt = self.warn_dash_deprecation(opt, section) 2023-09-12T14:57:04,428 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-12T14:57:04,429 !! 2023-09-12T14:57:04,430 ******************************************************************************** 2023-09-12T14:57:04,430 Requirements should be satisfied by a PEP 517 installer. 2023-09-12T14:57:04,431 If you are using pip, you can try `pip install --use-pep517`. 2023-09-12T14:57:04,431 ******************************************************************************** 2023-09-12T14:57:04,432 !! 2023-09-12T14:57:04,432 dist.fetch_build_eggs(dist.setup_requires) 2023-09-12T14:57:04,632 /usr/local/lib/python3.11/dist-packages/setuptools/installer.py:44: UserWarning: Module cmake was already imported from None, but /tmp/pip-wheel-i82cks_x/pystospa_b98e48d0d7694911b77328a6f55a9e3c/.eggs/cmake-3.27.4.1-py3.11-linux-armv7l.egg is being added to sys.path 2023-09-12T14:57:04,633 pkg_resources.working_set.add(dist, replace=True) 2023-09-12T14:57:04,716 running clean 2023-09-12T14:57:04,717 '_skbuild/linux-armv7l-3.11/setuptools/lib' does not exist -- can't clean it 2023-09-12T14:57:04,717 '_skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-12T14:57:04,718 '_skbuild/linux-armv7l-3.11/setuptools/scripts-3.11' does not exist -- can't clean it 2023-09-12T14:57:04,719 removing '_skbuild/linux-armv7l-3.11/setuptools' 2023-09-12T14:57:04,719 removing '_skbuild/linux-armv7l-3.11/cmake-install' 2023-09-12T14:57:04,720 removing '_skbuild/linux-armv7l-3.11/cmake-build' 2023-09-12T14:57:04,739 removing '_skbuild/linux-armv7l-3.11' 2023-09-12T14:57:04,862 Failed to build pystospa 2023-09-12T14:57:04,864 ERROR: Failed to build one or more wheels 2023-09-12T14:57:04,865 Exception information: 2023-09-12T14:57:04,865 Traceback (most recent call last): 2023-09-12T14:57:04,865 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-12T14:57:04,865 status = run_func(*args) 2023-09-12T14:57:04,865 ^^^^^^^^^^^^^^^ 2023-09-12T14:57:04,865 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-12T14:57:04,865 return func(self, options, args) 2023-09-12T14:57:04,865 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T14:57:04,865 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-12T14:57:04,865 raise CommandError("Failed to build one or more wheels") 2023-09-12T14:57:04,865 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-12T14:57:04,868 Removed build tracker: '/tmp/pip-build-tracker-biecv6pm'