2023-09-15T16:12:14,696 Created temporary directory: /tmp/pip-build-tracker-xrr_v55q 2023-09-15T16:12:14,697 Initialized build tracking at /tmp/pip-build-tracker-xrr_v55q 2023-09-15T16:12:14,697 Created build tracker: /tmp/pip-build-tracker-xrr_v55q 2023-09-15T16:12:14,698 Entered build tracker: /tmp/pip-build-tracker-xrr_v55q 2023-09-15T16:12:14,699 Created temporary directory: /tmp/pip-wheel-p0kmuc2u 2023-09-15T16:12:14,701 Created temporary directory: /tmp/pip-ephem-wheel-cache-tipi26u4 2023-09-15T16:12:14,723 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-15T16:12:14,727 2 location(s) to search for versions of gff3tool: 2023-09-15T16:12:14,727 * https://pypi.org/simple/gff3tool/ 2023-09-15T16:12:14,727 * https://www.piwheels.org/simple/gff3tool/ 2023-09-15T16:12:14,728 Fetching project page and analyzing links: https://pypi.org/simple/gff3tool/ 2023-09-15T16:12:14,728 Getting page https://pypi.org/simple/gff3tool/ 2023-09-15T16:12:14,730 Found index url https://pypi.org/simple/ 2023-09-15T16:12:14,950 Fetched page https://pypi.org/simple/gff3tool/ as application/vnd.pypi.simple.v1+json 2023-09-15T16:12:14,953 Found link https://files.pythonhosted.org/packages/71/33/dac2be6f38dd40d4f914814e7afe2cc5391f1bfecc77439612284de537a1/gff3tool-1.1.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.1.0 2023-09-15T16:12:14,954 Found link https://files.pythonhosted.org/packages/a1/f1/6630128adac220623c28a5f5ed4e6cfa070589143a0b2151237c20923149/gff3tool-1.3.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.3.0 2023-09-15T16:12:14,955 Found link https://files.pythonhosted.org/packages/71/cb/9b9d73fd7171571b9ad063fa3a6aac684aeebc7e958a37e2423c690d5110/gff3tool-1.4.1.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.1 2023-09-15T16:12:14,955 Found link https://files.pythonhosted.org/packages/23/bb/0b7952dfc7fb8992e6d7349eb55cbbe51e6c0750d57e33c01de5be39da46/gff3tool-1.4.2.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.2 2023-09-15T16:12:14,956 Found link https://files.pythonhosted.org/packages/7c/79/b59b3e47735edfe2ac2a9334c8e2836d63c0899b51f9badc416ae07e8353/gff3tool-1.4.3.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.3 2023-09-15T16:12:14,957 Found link https://files.pythonhosted.org/packages/cf/33/8cd85764a601bf3a5e0116f8b457c308294ec9c25139aacade6e21860335/gff3tool-1.4.4.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.4 2023-09-15T16:12:14,957 Skipping link: No binaries permitted for gff3tool: https://files.pythonhosted.org/packages/2a/4c/a16d0aae5fa870fc7630eb0536042fd3e0494467efd9f27cea6090cdbbe0/gff3tool-1.4.5-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/gff3tool/) 2023-09-15T16:12:14,958 Found link https://files.pythonhosted.org/packages/f8/78/330f714b6e771d69079128a44f61830c9ce22969eaa3b176dafb94c48809/gff3tool-1.4.5.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.5 2023-09-15T16:12:14,959 Found link https://files.pythonhosted.org/packages/8a/82/0f528dc498d7fdfbd6b8a968ed1cfee43ffa55461e77830a22f606aea3bb/gff3tool-2.0.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.0 2023-09-15T16:12:14,960 Found link https://files.pythonhosted.org/packages/aa/b3/cecb768a048bf2e661f0e77bf3208ed8ef203acbd93107b1f00d7b57da1e/gff3tool-2.0.1.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.1 2023-09-15T16:12:14,960 Found link https://files.pythonhosted.org/packages/21/2e/7e77d34adec82b4d896c8959c7993534810f8bc43cc374e984e5635bbf94/gff3tool-2.0.3.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.3 2023-09-15T16:12:14,961 Found link https://files.pythonhosted.org/packages/7f/12/d177f42f6e3a73dae82fd5cc89e7404de121ab381e5454ca8da11110d88a/gff3tool-2.1.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.1.0 2023-09-15T16:12:14,962 Fetching project page and analyzing links: https://www.piwheels.org/simple/gff3tool/ 2023-09-15T16:12:14,963 Getting page https://www.piwheels.org/simple/gff3tool/ 2023-09-15T16:12:14,964 Found index url https://www.piwheels.org/simple/ 2023-09-15T16:12:20,232 Fetched page https://www.piwheels.org/simple/gff3tool/ as text/html 2023-09-15T16:12:20,256 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp39-cp39-linux_armv7l.whl#sha256=acb5d3cb45afefe5eab3c74db7b776dda5cf59ce38bb15cbde8edddd6079c343 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,257 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp39-cp39-linux_armv6l.whl#sha256=acb5d3cb45afefe5eab3c74db7b776dda5cf59ce38bb15cbde8edddd6079c343 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,258 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp37-cp37m-linux_armv7l.whl#sha256=cfe6edebe5cd63bcd5cd38e34377d8c34eb8fdc675d148da65e75d4399db5ff6 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,259 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp37-cp37m-linux_armv6l.whl#sha256=cfe6edebe5cd63bcd5cd38e34377d8c34eb8fdc675d148da65e75d4399db5ff6 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,260 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp35-cp35m-linux_armv7l.whl#sha256=5eef1c37d908cd2d30f368726348cf85a26dc4d95abc8131735de5c720d7975b (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,260 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp35-cp35m-linux_armv6l.whl#sha256=5eef1c37d908cd2d30f368726348cf85a26dc4d95abc8131735de5c720d7975b (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,261 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp311-cp311-linux_armv7l.whl#sha256=95e1e75ca03aacb334f33561f347c21a95265b3d091aad9a31329060ff7c1931 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,262 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp311-cp311-linux_armv6l.whl#sha256=95e1e75ca03aacb334f33561f347c21a95265b3d091aad9a31329060ff7c1931 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,263 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=66d9164d8245e216f080754a89df8cda4192f034e99a32532198ccf3c38f6faa (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,264 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=66d9164d8245e216f080754a89df8cda4192f034e99a32532198ccf3c38f6faa (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,265 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp37-cp37m-linux_armv7l.whl#sha256=79c3e33604c37bc449a60874dbc1520dde9140874fb47948d3a087eeec48f52f (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,266 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp37-cp37m-linux_armv6l.whl#sha256=79c3e33604c37bc449a60874dbc1520dde9140874fb47948d3a087eeec48f52f (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,267 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp35-cp35m-linux_armv7l.whl#sha256=ce80154080e74e3fb30b340e7a76661a4b8f3d78c6104490aa6da9c40fdc91d6 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,268 Skipping link: No binaries permitted for gff3tool: 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(from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,272 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp39-cp39-linux_armv6l.whl#sha256=a89f1ece9e20b3183b0eba298b269f1c4b0109af60b409f5d3f7bc0be4914bfd (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,273 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp35-cp35m-linux_armv7l.whl#sha256=baa47b3147a931daf4958a447f96979e4448707996cc9d60ac45ad3ebb8e9c1f (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,274 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp35-cp35m-linux_armv6l.whl#sha256=baa47b3147a931daf4958a447f96979e4448707996cc9d60ac45ad3ebb8e9c1f (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,274 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp34-cp34m-linux_armv7l.whl#sha256=fa519097d18d8d8239808e305f0bb0549b3dd93a72ed8d5ea6f45d785e6bef11 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,275 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp34-cp34m-linux_armv6l.whl#sha256=fa519097d18d8d8239808e305f0bb0549b3dd93a72ed8d5ea6f45d785e6bef11 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,276 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp37-cp37m-linux_armv6l.whl#sha256=88be7d8c71c322212fdc989a672f6e0f10ed299cb5615d7d34f70058a0d6f928 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,277 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp37-cp37m-linux_armv7l.whl#sha256=88be7d8c71c322212fdc989a672f6e0f10ed299cb5615d7d34f70058a0d6f928 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,278 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp311-cp311-linux_armv7l.whl#sha256=036c36c64ae995bbd9b6234e9f0b2fdaed36e2a4869fa2885c0fa449d01f6bd1 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,279 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp311-cp311-linux_armv6l.whl#sha256=036c36c64ae995bbd9b6234e9f0b2fdaed36e2a4869fa2885c0fa449d01f6bd1 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,280 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=7dbbba3501c691ddb06f2ace77ee9897d1e51e32f6e05430923d4a5e53b86174 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,281 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=7dbbba3501c691ddb06f2ace77ee9897d1e51e32f6e05430923d4a5e53b86174 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,282 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp35-cp35m-linux_armv7l.whl#sha256=a6d1a1bf91d08ad305f7476e9a3439e57749b4091c112cbf4f73569a4f711a68 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,283 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp35-cp35m-linux_armv6l.whl#sha256=a6d1a1bf91d08ad305f7476e9a3439e57749b4091c112cbf4f73569a4f711a68 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,284 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=0be9d0d0079481fcbd19198c4fba52c6703b11b043e14bc17cd9b7863857efde (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,285 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=0be9d0d0079481fcbd19198c4fba52c6703b11b043e14bc17cd9b7863857efde (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,286 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp34-cp34m-linux_armv6l.whl#sha256=a6197f7982794de21eb411313c8591f643ea19667efba72907a0fbafd47ca4e7 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,287 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp34-cp34m-linux_armv7l.whl#sha256=a6197f7982794de21eb411313c8591f643ea19667efba72907a0fbafd47ca4e7 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,288 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-1.3.0-py3-none-any.whl#sha256=f993f46b60c812a88426ea96ad2c23aa521aee04c8bdad4016e21d03d6186291 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,288 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-1.1.0-py3-none-any.whl#sha256=f5eefabf7e1b27382cef033e939fd956121ebf02ae4e7085b83ade5f98c69d90 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-15T16:12:20,289 Skipping link: not a file: https://www.piwheels.org/simple/gff3tool/ 2023-09-15T16:12:20,290 Skipping link: not a file: https://pypi.org/simple/gff3tool/ 2023-09-15T16:12:20,338 Given no hashes to check 1 links for project 'gff3tool': discarding no candidates 2023-09-15T16:12:20,356 Collecting gff3tool==2.1.0 2023-09-15T16:12:20,358 Created temporary directory: /tmp/pip-unpack-ukrm74cn 2023-09-15T16:12:20,573 Downloading gff3tool-2.1.0.tar.gz (83 kB) 2023-09-15T16:12:20,743 Added gff3tool==2.1.0 from https://files.pythonhosted.org/packages/7f/12/d177f42f6e3a73dae82fd5cc89e7404de121ab381e5454ca8da11110d88a/gff3tool-2.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-xrr_v55q' 2023-09-15T16:12:20,745 Running setup.py (path:/tmp/pip-wheel-p0kmuc2u/gff3tool_2aa9a3d8a9d0476f8a2e0e0ae264ce15/setup.py) egg_info for package gff3tool 2023-09-15T16:12:20,746 Created temporary directory: /tmp/pip-pip-egg-info-s2xe45n4 2023-09-15T16:12:20,747 Preparing metadata (setup.py): started 2023-09-15T16:12:20,748 Running command python setup.py egg_info 2023-09-15T16:12:21,534 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-15T16:12:21,534 !! 2023-09-15T16:12:21,536 ******************************************************************************** 2023-09-15T16:12:21,537 Usage of dash-separated 'dist-dir' will not be supported in future 2023-09-15T16:12:21,538 versions. Please use the underscore name 'dist_dir' instead. 2023-09-15T16:12:21,540 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-15T16:12:21,541 or your builds will no longer be supported. 2023-09-15T16:12:21,544 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-15T16:12:21,545 ******************************************************************************** 2023-09-15T16:12:21,546 !! 2023-09-15T16:12:21,547 opt = self.warn_dash_deprecation(opt, section) 2023-09-15T16:12:21,548 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-15T16:12:21,549 !! 2023-09-15T16:12:21,551 ******************************************************************************** 2023-09-15T16:12:21,552 Usage of dash-separated 'description-file' will not be supported in future 2023-09-15T16:12:21,552 versions. Please use the underscore name 'description_file' instead. 2023-09-15T16:12:21,553 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-15T16:12:21,554 or your builds will no longer be supported. 2023-09-15T16:12:21,555 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-15T16:12:21,555 ******************************************************************************** 2023-09-15T16:12:21,556 !! 2023-09-15T16:12:21,557 opt = self.warn_dash_deprecation(opt, section) 2023-09-15T16:12:21,557 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-15T16:12:21,557 !! 2023-09-15T16:12:21,558 ******************************************************************************** 2023-09-15T16:12:21,559 Usage of dash-separated 'long-description-content-type' will not be supported in future 2023-09-15T16:12:21,559 versions. Please use the underscore name 'long_description_content_type' instead. 2023-09-15T16:12:21,560 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-15T16:12:21,561 or your builds will no longer be supported. 2023-09-15T16:12:21,562 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-15T16:12:21,562 ******************************************************************************** 2023-09-15T16:12:21,563 !! 2023-09-15T16:12:21,564 opt = self.warn_dash_deprecation(opt, section) 2023-09-15T16:12:21,857 running egg_info 2023-09-15T16:12:21,859 creating /tmp/pip-pip-egg-info-s2xe45n4/gff3tool.egg-info 2023-09-15T16:12:21,882 writing /tmp/pip-pip-egg-info-s2xe45n4/gff3tool.egg-info/PKG-INFO 2023-09-15T16:12:21,886 writing dependency_links to /tmp/pip-pip-egg-info-s2xe45n4/gff3tool.egg-info/dependency_links.txt 2023-09-15T16:12:21,887 writing entry points to /tmp/pip-pip-egg-info-s2xe45n4/gff3tool.egg-info/entry_points.txt 2023-09-15T16:12:21,889 writing top-level names to /tmp/pip-pip-egg-info-s2xe45n4/gff3tool.egg-info/top_level.txt 2023-09-15T16:12:21,890 writing manifest file '/tmp/pip-pip-egg-info-s2xe45n4/gff3tool.egg-info/SOURCES.txt' 2023-09-15T16:12:21,949 reading manifest file '/tmp/pip-pip-egg-info-s2xe45n4/gff3tool.egg-info/SOURCES.txt' 2023-09-15T16:12:21,951 reading manifest template 'MANIFEST.in' 2023-09-15T16:12:21,959 writing manifest file '/tmp/pip-pip-egg-info-s2xe45n4/gff3tool.egg-info/SOURCES.txt' 2023-09-15T16:12:22,082 Preparing metadata (setup.py): finished with status 'done' 2023-09-15T16:12:22,086 Source in /tmp/pip-wheel-p0kmuc2u/gff3tool_2aa9a3d8a9d0476f8a2e0e0ae264ce15 has version 2.1.0, which satisfies requirement gff3tool==2.1.0 from https://files.pythonhosted.org/packages/7f/12/d177f42f6e3a73dae82fd5cc89e7404de121ab381e5454ca8da11110d88a/gff3tool-2.1.0.tar.gz 2023-09-15T16:12:22,087 Removed gff3tool==2.1.0 from https://files.pythonhosted.org/packages/7f/12/d177f42f6e3a73dae82fd5cc89e7404de121ab381e5454ca8da11110d88a/gff3tool-2.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-xrr_v55q' 2023-09-15T16:12:22,092 Created temporary directory: /tmp/pip-unpack-5j3n_zos 2023-09-15T16:12:22,093 Created temporary directory: /tmp/pip-unpack-vpkgqsqi 2023-09-15T16:12:22,096 Building wheels for collected packages: gff3tool 2023-09-15T16:12:22,100 Created temporary directory: /tmp/pip-wheel-jarydwvs 2023-09-15T16:12:22,100 Building wheel for gff3tool (setup.py): started 2023-09-15T16:12:22,102 Destination directory: /tmp/pip-wheel-jarydwvs 2023-09-15T16:12:22,102 Running command python setup.py bdist_wheel 2023-09-15T16:12:23,066 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-15T16:12:23,066 !! 2023-09-15T16:12:23,067 ******************************************************************************** 2023-09-15T16:12:23,067 Usage of dash-separated 'dist-dir' will not be supported in future 2023-09-15T16:12:23,068 versions. Please use the underscore name 'dist_dir' instead. 2023-09-15T16:12:23,069 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-15T16:12:23,069 or your builds will no longer be supported. 2023-09-15T16:12:23,070 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-15T16:12:23,071 ******************************************************************************** 2023-09-15T16:12:23,071 !! 2023-09-15T16:12:23,072 opt = self.warn_dash_deprecation(opt, section) 2023-09-15T16:12:23,072 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-15T16:12:23,073 !! 2023-09-15T16:12:23,074 ******************************************************************************** 2023-09-15T16:12:23,074 Usage of dash-separated 'description-file' will not be supported in future 2023-09-15T16:12:23,074 versions. Please use the underscore name 'description_file' instead. 2023-09-15T16:12:23,075 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-15T16:12:23,076 or your builds will no longer be supported. 2023-09-15T16:12:23,077 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-15T16:12:23,078 ******************************************************************************** 2023-09-15T16:12:23,079 !! 2023-09-15T16:12:23,080 opt = self.warn_dash_deprecation(opt, section) 2023-09-15T16:12:23,080 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-15T16:12:23,081 !! 2023-09-15T16:12:23,082 ******************************************************************************** 2023-09-15T16:12:23,082 Usage of dash-separated 'long-description-content-type' will not be supported in future 2023-09-15T16:12:23,083 versions. Please use the underscore name 'long_description_content_type' instead. 2023-09-15T16:12:23,084 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-15T16:12:23,085 or your builds will no longer be supported. 2023-09-15T16:12:23,086 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-15T16:12:23,086 ******************************************************************************** 2023-09-15T16:12:23,087 !! 2023-09-15T16:12:23,088 opt = self.warn_dash_deprecation(opt, section) 2023-09-15T16:12:23,357 running bdist_wheel 2023-09-15T16:12:23,429 running build 2023-09-15T16:12:59,570 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-15T16:12:59,570 !! 2023-09-15T16:12:59,572 ******************************************************************************** 2023-09-15T16:12:59,572 Please avoid running ``setup.py`` directly. 2023-09-15T16:12:59,573 Instead, use pypa/build, pypa/installer or other 2023-09-15T16:12:59,573 standards-based tools. 2023-09-15T16:12:59,575 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-15T16:12:59,576 ******************************************************************************** 2023-09-15T16:12:59,577 !! 2023-09-15T16:12:59,577 self.initialize_options() 2023-09-15T16:12:59,599 installing to build/bdist.linux-armv7l/wheel 2023-09-15T16:12:59,599 running install 2023-09-15T16:12:59,623 running install_lib 2023-09-15T16:12:59,648 running build_py 2023-09-15T16:12:59,676 creating build 2023-09-15T16:12:59,676 creating build/lib 2023-09-15T16:12:59,677 creating build/lib/gff3tool 2023-09-15T16:12:59,679 copying gff3tool/__init__.py -> build/lib/gff3tool 2023-09-15T16:12:59,681 creating build/lib/gff3tool/bin 2023-09-15T16:12:59,683 copying gff3tool/bin/gff3_sort.py -> build/lib/gff3tool/bin 2023-09-15T16:12:59,686 copying gff3tool/bin/gff3_QC.py -> build/lib/gff3tool/bin 2023-09-15T16:12:59,688 copying gff3tool/bin/gff3_merge.py -> build/lib/gff3tool/bin 2023-09-15T16:12:59,691 copying gff3tool/bin/__init__.py -> build/lib/gff3tool/bin 2023-09-15T16:12:59,692 copying gff3tool/bin/gff3_fix.py -> build/lib/gff3tool/bin 2023-09-15T16:12:59,694 copying gff3tool/bin/version.py -> build/lib/gff3tool/bin 2023-09-15T16:12:59,696 copying gff3tool/bin/gff3_to_fasta.py -> build/lib/gff3tool/bin 2023-09-15T16:12:59,700 creating build/lib/gff3tool/lib 2023-09-15T16:12:59,701 copying gff3tool/lib/gff3_ID_generator.py -> build/lib/gff3tool/lib 2023-09-15T16:12:59,704 copying gff3tool/lib/replace_OGS.py -> build/lib/gff3tool/lib 2023-09-15T16:12:59,707 copying gff3tool/lib/__init__.py -> build/lib/gff3tool/lib 2023-09-15T16:12:59,709 copying gff3tool/lib/utils.py -> build/lib/gff3tool/lib 2023-09-15T16:12:59,710 copying gff3tool/lib/id_processor.py -> build/lib/gff3tool/lib 2023-09-15T16:12:59,714 creating build/lib/gff3tool/lib/single_feature 2023-09-15T16:12:59,715 copying gff3tool/lib/single_feature/__init__.py -> build/lib/gff3tool/lib/single_feature 2023-09-15T16:12:59,717 copying gff3tool/lib/single_feature/single_feature.py -> build/lib/gff3tool/lib/single_feature 2023-09-15T16:12:59,720 creating build/lib/gff3tool/lib/function4gff 2023-09-15T16:12:59,721 copying gff3tool/lib/function4gff/function4gff.py -> build/lib/gff3tool/lib/function4gff 2023-09-15T16:12:59,724 copying gff3tool/lib/function4gff/__init__.py -> build/lib/gff3tool/lib/function4gff 2023-09-15T16:12:59,726 creating build/lib/gff3tool/lib/gff3_merge 2023-09-15T16:12:59,728 copying gff3tool/lib/gff3_merge/merge.py -> build/lib/gff3tool/lib/gff3_merge 2023-09-15T16:12:59,731 copying gff3tool/lib/gff3_merge/auto_replace_tag.py -> build/lib/gff3tool/lib/gff3_merge 2023-09-15T16:12:59,734 copying gff3tool/lib/gff3_merge/__init__.py -> build/lib/gff3tool/lib/gff3_merge 2023-09-15T16:12:59,736 copying gff3tool/lib/gff3_merge/revision.py -> build/lib/gff3tool/lib/gff3_merge 2023-09-15T16:12:59,739 creating build/lib/gff3tool/lib/gff3_fix 2023-09-15T16:12:59,740 copying gff3tool/lib/gff3_fix/__init__.py -> build/lib/gff3tool/lib/gff3_fix 2023-09-15T16:12:59,742 copying gff3tool/lib/gff3_fix/fix.py -> build/lib/gff3tool/lib/gff3_fix 2023-09-15T16:12:59,745 creating build/lib/gff3tool/lib/inter_model 2023-09-15T16:12:59,746 copying gff3tool/lib/inter_model/inter_model.py -> build/lib/gff3tool/lib/inter_model 2023-09-15T16:12:59,748 copying gff3tool/lib/inter_model/__init__.py -> build/lib/gff3tool/lib/inter_model 2023-09-15T16:12:59,750 creating build/lib/gff3tool/lib/ERROR 2023-09-15T16:12:59,752 copying gff3tool/lib/ERROR/ERROR.py -> build/lib/gff3tool/lib/ERROR 2023-09-15T16:12:59,753 copying gff3tool/lib/ERROR/__init__.py -> build/lib/gff3tool/lib/ERROR 2023-09-15T16:12:59,756 creating build/lib/gff3tool/lib/gff3 2023-09-15T16:12:59,757 copying gff3tool/lib/gff3/__init__.py -> build/lib/gff3tool/lib/gff3 2023-09-15T16:12:59,759 copying gff3tool/lib/gff3/gff3.py -> build/lib/gff3tool/lib/gff3 2023-09-15T16:12:59,763 creating build/lib/gff3tool/lib/intra_model 2023-09-15T16:12:59,764 copying gff3tool/lib/intra_model/__init__.py -> build/lib/gff3tool/lib/intra_model 2023-09-15T16:12:59,766 copying gff3tool/lib/intra_model/intra_model.py -> build/lib/gff3tool/lib/intra_model 2023-09-15T16:12:59,768 running egg_info 2023-09-15T16:12:59,825 writing gff3tool.egg-info/PKG-INFO 2023-09-15T16:12:59,828 writing dependency_links to gff3tool.egg-info/dependency_links.txt 2023-09-15T16:12:59,830 writing entry points to gff3tool.egg-info/entry_points.txt 2023-09-15T16:12:59,831 writing top-level names to gff3tool.egg-info/top_level.txt 2023-09-15T16:12:59,862 reading manifest file 'gff3tool.egg-info/SOURCES.txt' 2023-09-15T16:12:59,865 reading manifest template 'MANIFEST.in' 2023-09-15T16:12:59,875 writing manifest file 'gff3tool.egg-info/SOURCES.txt' 2023-09-15T16:12:59,878 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'gff3tool.lib.auto_assignment' is absent from the `packages` configuration. 2023-09-15T16:12:59,878 !! 2023-09-15T16:12:59,879 ******************************************************************************** 2023-09-15T16:12:59,880 ############################ 2023-09-15T16:12:59,880 # Package would be ignored # 2023-09-15T16:12:59,881 ############################ 2023-09-15T16:12:59,881 Python recognizes 'gff3tool.lib.auto_assignment' as an importable package[^1], 2023-09-15T16:12:59,883 but it is absent from setuptools' `packages` configuration. 2023-09-15T16:12:59,884 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-15T16:12:59,884 package, please make sure that 'gff3tool.lib.auto_assignment' is explicitly added 2023-09-15T16:12:59,885 to the `packages` configuration field. 2023-09-15T16:12:59,885 Alternatively, you can also rely on setuptools' discovery methods 2023-09-15T16:12:59,886 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-15T16:12:59,887 instead of `find_packages(...)`/`find:`). 2023-09-15T16:12:59,888 You can read more about "package discovery" on setuptools documentation page: 2023-09-15T16:12:59,889 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-15T16:12:59,890 If you don't want 'gff3tool.lib.auto_assignment' to be distributed and are 2023-09-15T16:12:59,890 already explicitly excluding 'gff3tool.lib.auto_assignment' via 2023-09-15T16:12:59,891 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-15T16:12:59,891 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-15T16:12:59,892 combination with a more fine grained `package-data` configuration. 2023-09-15T16:12:59,893 You can read more about "package data files" on setuptools documentation page: 2023-09-15T16:12:59,894 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-15T16:12:59,896 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-15T16:12:59,896 even if it does not contain any `.py` files. 2023-09-15T16:12:59,897 On the other hand, currently there is no concept of package data 2023-09-15T16:12:59,897 directory, all directories are treated like packages. 2023-09-15T16:12:59,898 ******************************************************************************** 2023-09-15T16:12:59,899 !! 2023-09-15T16:12:59,899 check.warn(importable) 2023-09-15T16:12:59,900 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'gff3tool.lib.check_gene_parent' is absent from the `packages` configuration. 2023-09-15T16:12:59,900 !! 2023-09-15T16:12:59,901 ******************************************************************************** 2023-09-15T16:12:59,902 ############################ 2023-09-15T16:12:59,903 # Package would be ignored # 2023-09-15T16:12:59,903 ############################ 2023-09-15T16:12:59,903 Python recognizes 'gff3tool.lib.check_gene_parent' as an importable package[^1], 2023-09-15T16:12:59,904 but it is absent from setuptools' `packages` configuration. 2023-09-15T16:12:59,905 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-15T16:12:59,905 package, please make sure that 'gff3tool.lib.check_gene_parent' is explicitly added 2023-09-15T16:12:59,906 to the `packages` configuration field. 2023-09-15T16:12:59,907 Alternatively, you can also rely on setuptools' discovery methods 2023-09-15T16:12:59,907 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-15T16:12:59,908 instead of `find_packages(...)`/`find:`). 2023-09-15T16:12:59,909 You can read more about "package discovery" on setuptools documentation page: 2023-09-15T16:12:59,909 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-15T16:12:59,910 If you don't want 'gff3tool.lib.check_gene_parent' to be distributed and are 2023-09-15T16:12:59,911 already explicitly excluding 'gff3tool.lib.check_gene_parent' via 2023-09-15T16:12:59,911 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-15T16:12:59,912 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-15T16:12:59,912 combination with a more fine grained `package-data` configuration. 2023-09-15T16:12:59,913 You can read more about "package data files" on setuptools documentation page: 2023-09-15T16:12:59,914 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-15T16:12:59,916 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-15T16:12:59,916 even if it does not contain any `.py` files. 2023-09-15T16:12:59,917 On the other hand, currently there is no concept of package data 2023-09-15T16:12:59,918 directory, all directories are treated like packages. 2023-09-15T16:12:59,918 ******************************************************************************** 2023-09-15T16:12:59,920 !! 2023-09-15T16:12:59,920 check.warn(importable) 2023-09-15T16:12:59,921 copying gff3tool/lib.md -> build/lib/gff3tool 2023-09-15T16:12:59,922 creating build/lib/gff3tool/lib/auto_assignment 2023-09-15T16:12:59,922 copying gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl -> build/lib/gff3tool/lib/auto_assignment 2023-09-15T16:12:59,923 copying gff3tool/lib/auto_assignment/find_match.pl -> build/lib/gff3tool/lib/auto_assignment 2023-09-15T16:12:59,924 copying gff3tool/lib/auto_assignment/gen_spreadsheet.pl -> build/lib/gff3tool/lib/auto_assignment 2023-09-15T16:12:59,924 creating build/lib/gff3tool/lib/check_gene_parent 2023-09-15T16:12:59,925 copying gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl -> build/lib/gff3tool/lib/check_gene_parent 2023-09-15T16:12:59,926 creating build/lib/gff3tool/lib/ncbi-blast+ 2023-09-15T16:12:59,926 creating build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:12:59,927 copying gff3tool/lib/ncbi-blast+/bin/blast_formatter -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:00,393 copying gff3tool/lib/ncbi-blast+/bin/blastdb_aliastool -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:00,676 copying gff3tool/lib/ncbi-blast+/bin/blastdbcheck -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:01,003 copying gff3tool/lib/ncbi-blast+/bin/blastdbcmd -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:01,446 copying gff3tool/lib/ncbi-blast+/bin/blastn -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:01,909 copying gff3tool/lib/ncbi-blast+/bin/blastp -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:02,420 copying gff3tool/lib/ncbi-blast+/bin/blastx -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:02,944 copying gff3tool/lib/ncbi-blast+/bin/convert2blastmask -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:04,627 copying gff3tool/lib/ncbi-blast+/bin/deltablast -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:06,226 copying gff3tool/lib/ncbi-blast+/bin/dustmasker -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:06,673 copying gff3tool/lib/ncbi-blast+/bin/legacy_blast.pl -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:06,678 copying gff3tool/lib/ncbi-blast+/bin/makeblastdb -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:07,216 copying gff3tool/lib/ncbi-blast+/bin/makembindex -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:07,551 copying gff3tool/lib/ncbi-blast+/bin/makeprofiledb -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:07,970 copying gff3tool/lib/ncbi-blast+/bin/psiblast -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:08,802 copying gff3tool/lib/ncbi-blast+/bin/rpsblast -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:09,271 copying gff3tool/lib/ncbi-blast+/bin/rpstblastn -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:09,797 copying gff3tool/lib/ncbi-blast+/bin/segmasker -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:10,121 copying gff3tool/lib/ncbi-blast+/bin/tblastn -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:10,603 copying gff3tool/lib/ncbi-blast+/bin/tblastx -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:11,557 copying gff3tool/lib/ncbi-blast+/bin/update_blastdb.pl -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:11,560 copying gff3tool/lib/ncbi-blast+/bin/windowmasker -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:11,925 creating build/bdist.linux-armv7l 2023-09-15T16:13:11,925 creating build/bdist.linux-armv7l/wheel 2023-09-15T16:13:11,926 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data 2023-09-15T16:13:11,926 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib 2023-09-15T16:13:11,928 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool 2023-09-15T16:13:11,929 copying build/lib/gff3tool/lib.md -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool 2023-09-15T16:13:11,931 copying build/lib/gff3tool/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool 2023-09-15T16:13:11,933 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/bin 2023-09-15T16:13:11,933 copying build/lib/gff3tool/bin/gff3_sort.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/bin 2023-09-15T16:13:11,936 copying build/lib/gff3tool/bin/gff3_QC.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/bin 2023-09-15T16:13:11,938 copying build/lib/gff3tool/bin/gff3_merge.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/bin 2023-09-15T16:13:11,941 copying build/lib/gff3tool/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/bin 2023-09-15T16:13:11,942 copying build/lib/gff3tool/bin/gff3_fix.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/bin 2023-09-15T16:13:11,944 copying build/lib/gff3tool/bin/version.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/bin 2023-09-15T16:13:11,946 copying build/lib/gff3tool/bin/gff3_to_fasta.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/bin 2023-09-15T16:13:11,949 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib 2023-09-15T16:13:11,951 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/single_feature 2023-09-15T16:13:11,952 copying build/lib/gff3tool/lib/single_feature/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/single_feature 2023-09-15T16:13:11,953 copying build/lib/gff3tool/lib/single_feature/single_feature.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/single_feature 2023-09-15T16:13:11,956 copying build/lib/gff3tool/lib/gff3_ID_generator.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib 2023-09-15T16:13:11,959 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/auto_assignment 2023-09-15T16:13:11,960 copying build/lib/gff3tool/lib/auto_assignment/gen_spreadsheet.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/auto_assignment 2023-09-15T16:13:11,961 copying build/lib/gff3tool/lib/auto_assignment/find_match.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/auto_assignment 2023-09-15T16:13:11,964 copying build/lib/gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/auto_assignment 2023-09-15T16:13:11,966 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/function4gff 2023-09-15T16:13:11,967 copying build/lib/gff3tool/lib/function4gff/function4gff.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/function4gff 2023-09-15T16:13:11,969 copying build/lib/gff3tool/lib/function4gff/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/function4gff 2023-09-15T16:13:11,971 copying build/lib/gff3tool/lib/replace_OGS.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib 2023-09-15T16:13:11,973 copying build/lib/gff3tool/lib/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib 2023-09-15T16:13:11,975 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/check_gene_parent 2023-09-15T16:13:11,976 copying build/lib/gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/check_gene_parent 2023-09-15T16:13:11,979 copying build/lib/gff3tool/lib/utils.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib 2023-09-15T16:13:11,981 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge 2023-09-15T16:13:11,982 copying build/lib/gff3tool/lib/gff3_merge/merge.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge 2023-09-15T16:13:11,984 copying build/lib/gff3tool/lib/gff3_merge/auto_replace_tag.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge 2023-09-15T16:13:11,987 copying build/lib/gff3tool/lib/gff3_merge/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge 2023-09-15T16:13:11,988 copying build/lib/gff3tool/lib/gff3_merge/revision.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge 2023-09-15T16:13:11,991 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+ 2023-09-15T16:13:11,992 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:11,993 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastn -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:12,437 copying build/lib/gff3tool/lib/ncbi-blast+/bin/psiblast -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:12,900 copying build/lib/gff3tool/lib/ncbi-blast+/bin/convert2blastmask -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:13,242 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastdbcheck -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:13,569 copying build/lib/gff3tool/lib/ncbi-blast+/bin/makembindex -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:13,876 copying build/lib/gff3tool/lib/ncbi-blast+/bin/dustmasker -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:14,179 copying build/lib/gff3tool/lib/ncbi-blast+/bin/makeblastdb -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:14,573 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastdb_aliastool -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:14,915 copying build/lib/gff3tool/lib/ncbi-blast+/bin/deltablast -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:15,358 copying build/lib/gff3tool/lib/ncbi-blast+/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:15,361 copying build/lib/gff3tool/lib/ncbi-blast+/bin/rpstblastn -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:15,802 copying build/lib/gff3tool/lib/ncbi-blast+/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:15,804 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastp -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:16,621 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blast_formatter -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:17,423 copying build/lib/gff3tool/lib/ncbi-blast+/bin/segmasker -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:17,747 copying build/lib/gff3tool/lib/ncbi-blast+/bin/tblastx -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:18,214 copying build/lib/gff3tool/lib/ncbi-blast+/bin/tblastn -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:18,694 copying build/lib/gff3tool/lib/ncbi-blast+/bin/makeprofiledb -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:19,259 copying build/lib/gff3tool/lib/ncbi-blast+/bin/windowmasker -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:19,717 copying build/lib/gff3tool/lib/ncbi-blast+/bin/rpsblast -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:20,353 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastdbcmd -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:20,810 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastx -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-15T16:13:21,587 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_fix 2023-09-15T16:13:21,588 copying build/lib/gff3tool/lib/gff3_fix/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_fix 2023-09-15T16:13:21,590 copying build/lib/gff3tool/lib/gff3_fix/fix.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_fix 2023-09-15T16:13:21,594 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/inter_model 2023-09-15T16:13:21,595 copying build/lib/gff3tool/lib/inter_model/inter_model.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/inter_model 2023-09-15T16:13:21,598 copying build/lib/gff3tool/lib/inter_model/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/inter_model 2023-09-15T16:13:21,601 copying build/lib/gff3tool/lib/id_processor.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib 2023-09-15T16:13:21,604 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ERROR 2023-09-15T16:13:21,605 copying build/lib/gff3tool/lib/ERROR/ERROR.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ERROR 2023-09-15T16:13:21,607 copying build/lib/gff3tool/lib/ERROR/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ERROR 2023-09-15T16:13:21,611 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3 2023-09-15T16:13:21,612 copying build/lib/gff3tool/lib/gff3/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3 2023-09-15T16:13:21,613 copying build/lib/gff3tool/lib/gff3/gff3.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3 2023-09-15T16:13:21,619 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/intra_model 2023-09-15T16:13:21,620 copying build/lib/gff3tool/lib/intra_model/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/intra_model 2023-09-15T16:13:21,622 copying build/lib/gff3tool/lib/intra_model/intra_model.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/intra_model 2023-09-15T16:13:21,625 running install_egg_info 2023-09-15T16:13:21,672 Copying gff3tool.egg-info to build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool-2.1.0-py3.11.egg-info 2023-09-15T16:13:21,683 running install_scripts 2023-09-15T16:13:21,735 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.dist-info/WHEEL 2023-09-15T16:13:21,738 creating '/tmp/pip-wheel-jarydwvs/gff3tool-2.1.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-15T16:13:21,740 adding 'gff3tool-2.1.0.data/purelib/gff3tool/__init__.py' 2023-09-15T16:13:21,742 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib.md' 2023-09-15T16:13:21,744 adding 'gff3tool-2.1.0.data/purelib/gff3tool/bin/__init__.py' 2023-09-15T16:13:21,745 adding 'gff3tool-2.1.0.data/purelib/gff3tool/bin/gff3_QC.py' 2023-09-15T16:13:21,747 adding 'gff3tool-2.1.0.data/purelib/gff3tool/bin/gff3_fix.py' 2023-09-15T16:13:21,749 adding 'gff3tool-2.1.0.data/purelib/gff3tool/bin/gff3_merge.py' 2023-09-15T16:13:21,751 adding 'gff3tool-2.1.0.data/purelib/gff3tool/bin/gff3_sort.py' 2023-09-15T16:13:21,756 adding 'gff3tool-2.1.0.data/purelib/gff3tool/bin/gff3_to_fasta.py' 2023-09-15T16:13:21,757 adding 'gff3tool-2.1.0.data/purelib/gff3tool/bin/version.py' 2023-09-15T16:13:21,759 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/__init__.py' 2023-09-15T16:13:21,761 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_ID_generator.py' 2023-09-15T16:13:21,764 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/id_processor.py' 2023-09-15T16:13:21,768 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/replace_OGS.py' 2023-09-15T16:13:21,769 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/utils.py' 2023-09-15T16:13:21,772 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ERROR/ERROR.py' 2023-09-15T16:13:21,773 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ERROR/__init__.py' 2023-09-15T16:13:21,775 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl' 2023-09-15T16:13:21,777 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/auto_assignment/find_match.pl' 2023-09-15T16:13:21,779 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/auto_assignment/gen_spreadsheet.pl' 2023-09-15T16:13:21,781 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl' 2023-09-15T16:13:21,783 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/function4gff/__init__.py' 2023-09-15T16:13:21,784 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/function4gff/function4gff.py' 2023-09-15T16:13:21,786 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3/__init__.py' 2023-09-15T16:13:21,794 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3/gff3.py' 2023-09-15T16:13:21,796 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_fix/__init__.py' 2023-09-15T16:13:21,800 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_fix/fix.py' 2023-09-15T16:13:21,802 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge/__init__.py' 2023-09-15T16:13:21,804 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge/auto_replace_tag.py' 2023-09-15T16:13:21,806 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge/merge.py' 2023-09-15T16:13:21,808 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge/revision.py' 2023-09-15T16:13:21,810 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/inter_model/__init__.py' 2023-09-15T16:13:21,811 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/inter_model/inter_model.py' 2023-09-15T16:13:21,813 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/intra_model/__init__.py' 2023-09-15T16:13:21,815 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/intra_model/intra_model.py' 2023-09-15T16:13:26,909 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/blast_formatter' 2023-09-15T16:13:30,326 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastdb_aliastool' 2023-09-15T16:13:34,079 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastdbcheck' 2023-09-15T16:13:38,744 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastdbcmd' 2023-09-15T16:13:44,026 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastn' 2023-09-15T16:13:49,685 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastp' 2023-09-15T16:13:55,191 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastx' 2023-09-15T16:13:58,753 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/convert2blastmask' 2023-09-15T16:14:04,008 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/deltablast' 2023-09-15T16:14:07,606 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/dustmasker' 2023-09-15T16:14:07,783 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/legacy_blast.pl' 2023-09-15T16:14:11,379 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/makeblastdb' 2023-09-15T16:14:14,996 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/makembindex' 2023-09-15T16:14:18,516 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/makeprofiledb' 2023-09-15T16:14:23,814 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/psiblast' 2023-09-15T16:14:29,140 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/rpsblast' 2023-09-15T16:14:34,456 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/rpstblastn' 2023-09-15T16:14:38,100 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/segmasker' 2023-09-15T16:14:43,330 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/tblastn' 2023-09-15T16:14:48,645 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/tblastx' 2023-09-15T16:14:48,908 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/update_blastdb.pl' 2023-09-15T16:14:52,913 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/windowmasker' 2023-09-15T16:14:53,120 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/single_feature/__init__.py' 2023-09-15T16:14:53,122 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/single_feature/single_feature.py' 2023-09-15T16:14:53,125 adding 'gff3tool-2.1.0.dist-info/METADATA' 2023-09-15T16:14:53,126 adding 'gff3tool-2.1.0.dist-info/WHEEL' 2023-09-15T16:14:53,127 adding 'gff3tool-2.1.0.dist-info/entry_points.txt' 2023-09-15T16:14:53,128 adding 'gff3tool-2.1.0.dist-info/top_level.txt' 2023-09-15T16:14:53,130 adding 'gff3tool-2.1.0.dist-info/RECORD' 2023-09-15T16:14:53,215 removing build/bdist.linux-armv7l/wheel 2023-09-15T16:14:53,573 Building wheel for gff3tool (setup.py): finished with status 'done' 2023-09-15T16:14:57,711 Created wheel for gff3tool: filename=gff3tool-2.1.0-cp311-cp311-linux_armv7l.whl size=177059685 sha256=866502237ec1e32fd2caee5c04df61c4464dc7db901009e864c3f53ff3f43d94 2023-09-15T16:14:57,713 Stored in directory: /tmp/pip-ephem-wheel-cache-tipi26u4/wheels/2e/eb/41/b58875ddfd5ea1b9d65dee2bb8c2ead840d2bcbec3e7d561f0 2023-09-15T16:14:57,784 Successfully built gff3tool 2023-09-15T16:15:01,733 Removed build tracker: '/tmp/pip-build-tracker-xrr_v55q'