2023-09-18T22:05:22,336 Created temporary directory: /tmp/pip-build-tracker-ab2shscz 2023-09-18T22:05:22,338 Initialized build tracking at /tmp/pip-build-tracker-ab2shscz 2023-09-18T22:05:22,338 Created build tracker: /tmp/pip-build-tracker-ab2shscz 2023-09-18T22:05:22,339 Entered build tracker: /tmp/pip-build-tracker-ab2shscz 2023-09-18T22:05:22,339 Created temporary directory: /tmp/pip-wheel-22e6rb4h 2023-09-18T22:05:22,343 Created temporary directory: /tmp/pip-ephem-wheel-cache-xk7i0gh9 2023-09-18T22:05:22,367 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-18T22:05:22,371 2 location(s) to search for versions of multidiff: 2023-09-18T22:05:22,371 * https://pypi.org/simple/multidiff/ 2023-09-18T22:05:22,371 * https://www.piwheels.org/simple/multidiff/ 2023-09-18T22:05:22,372 Fetching project page and analyzing links: https://pypi.org/simple/multidiff/ 2023-09-18T22:05:22,373 Getting page https://pypi.org/simple/multidiff/ 2023-09-18T22:05:22,374 Found index url https://pypi.org/simple/ 2023-09-18T22:05:22,623 Fetched page https://pypi.org/simple/multidiff/ as application/vnd.pypi.simple.v1+json 2023-09-18T22:05:22,625 Found link https://files.pythonhosted.org/packages/6b/b0/5cdb756f545bfff8ac131e439c7e8c1985d1b74e9105f102a88d1faf4ec7/multidiff-0.1.tar.gz (from https://pypi.org/simple/multidiff/), version: 0.1 2023-09-18T22:05:22,626 Found link https://files.pythonhosted.org/packages/16/dd/71ac8edf517da90ca4b5ec455f9e5b9b722365ad3b0aa6a500c6942601f6/multidiff-0.1.1.tar.gz (from https://pypi.org/simple/multidiff/), version: 0.1.1 2023-09-18T22:05:22,627 Skipping link: No binaries permitted for multidiff: https://files.pythonhosted.org/packages/73/66/1ad29c460be480796960deae0571fd0e506b8c87aa9fe82915e59dc09365/multidiff-0.2-py3-none-any.whl (from https://pypi.org/simple/multidiff/) 2023-09-18T22:05:22,627 Found link https://files.pythonhosted.org/packages/29/23/f3d6045488b1708967eeac4b24173818f2fbe02dd6a873599e26c63d60e1/multidiff-0.2.tar.gz (from https://pypi.org/simple/multidiff/), version: 0.2 2023-09-18T22:05:22,628 Skipping link: No binaries permitted for multidiff: https://files.pythonhosted.org/packages/16/f3/541f57caf3cbe39b49f3238109ffe73c780410d1c71f609710c56e340f0f/multidiff-0.2.1-py3-none-any.whl (from https://pypi.org/simple/multidiff/) 2023-09-18T22:05:22,628 Found link https://files.pythonhosted.org/packages/c3/fe/24fbda27ee5d72cf304f66a6fc919fb116df8b989e417aa5198079dbbd5c/multidiff-0.2.1.tar.gz (from https://pypi.org/simple/multidiff/), version: 0.2.1 2023-09-18T22:05:22,629 Fetching project page and analyzing links: https://www.piwheels.org/simple/multidiff/ 2023-09-18T22:05:22,630 Getting page https://www.piwheels.org/simple/multidiff/ 2023-09-18T22:05:22,631 Found index url https://www.piwheels.org/simple/ 2023-09-18T22:05:26,544 Fetched page https://www.piwheels.org/simple/multidiff/ as text/html 2023-09-18T22:05:26,548 Skipping link: No binaries permitted for multidiff: https://www.piwheels.org/simple/multidiff/multidiff-0.2.1-py3-none-any.whl#sha256=e4adea42d3fcc827335b9c287016a044803bb3a65047944dbbfb98b40a82fda8 (from https://www.piwheels.org/simple/multidiff/) 2023-09-18T22:05:26,550 Skipping link: No binaries permitted for multidiff: https://www.piwheels.org/simple/multidiff/multidiff-0.1.1-py3-none-any.whl#sha256=506abbafb56e1fcdb9755ba862bf1739500a9cb84065c8f210da3407925a5824 (from https://www.piwheels.org/simple/multidiff/) 2023-09-18T22:05:26,551 Skipping link: No binaries permitted for multidiff: https://www.piwheels.org/simple/multidiff/multidiff-0.1-py3-none-any.whl#sha256=322679de806aac11dc6c2c9c04e1612a9bb0e56e6d6dad4d5cc3a3e1e07c92f7 (from https://www.piwheels.org/simple/multidiff/) 2023-09-18T22:05:26,552 Skipping link: not a file: https://www.piwheels.org/simple/multidiff/ 2023-09-18T22:05:26,553 Skipping link: not a file: https://pypi.org/simple/multidiff/ 2023-09-18T22:05:26,593 Given no hashes to check 1 links for project 'multidiff': discarding no candidates 2023-09-18T22:05:26,611 Collecting multidiff==0.2 2023-09-18T22:05:26,614 Created temporary directory: /tmp/pip-unpack-f4w6lte8 2023-09-18T22:05:27,177 Downloading multidiff-0.2.tar.gz (6.3 kB) 2023-09-18T22:05:27,208 Added multidiff==0.2 from https://files.pythonhosted.org/packages/29/23/f3d6045488b1708967eeac4b24173818f2fbe02dd6a873599e26c63d60e1/multidiff-0.2.tar.gz to build tracker '/tmp/pip-build-tracker-ab2shscz' 2023-09-18T22:05:27,210 Running setup.py (path:/tmp/pip-wheel-22e6rb4h/multidiff_84bcd384b39c41f68e6371d3b7e6d520/setup.py) egg_info for package multidiff 2023-09-18T22:05:27,211 Created temporary directory: /tmp/pip-pip-egg-info-xxfku5tu 2023-09-18T22:05:27,212 Preparing metadata (setup.py): started 2023-09-18T22:05:27,213 Running command python setup.py egg_info 2023-09-18T22:05:27,698 Traceback (most recent call last): 2023-09-18T22:05:27,698 File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 23, in 2023-09-18T22:05:27,699 from . import multiarray 2023-09-18T22:05:27,699 File "/usr/local/lib/python3.11/dist-packages/numpy/core/multiarray.py", line 10, in 2023-09-18T22:05:27,700 from . import overrides 2023-09-18T22:05:27,700 File "/usr/local/lib/python3.11/dist-packages/numpy/core/overrides.py", line 8, in 2023-09-18T22:05:27,701 from numpy.core._multiarray_umath import ( 2023-09-18T22:05:27,701 ImportError: libopenblas.so.0: cannot open shared object file: No such file or directory 2023-09-18T22:05:27,702 During handling of the above exception, another exception occurred: 2023-09-18T22:05:27,703 Traceback (most recent call last): 2023-09-18T22:05:27,704 File "", line 2, in 2023-09-18T22:05:27,705 File "", line 34, in 2023-09-18T22:05:27,706 File "/tmp/pip-wheel-22e6rb4h/multidiff_84bcd384b39c41f68e6371d3b7e6d520/setup.py", line 6, in 2023-09-18T22:05:27,707 import multidiff 2023-09-18T22:05:27,707 File "/tmp/pip-wheel-22e6rb4h/multidiff_84bcd384b39c41f68e6371d3b7e6d520/multidiff/__init__.py", line 1, in 2023-09-18T22:05:27,708 from .diffusion_matrix import (compute_diffusion_matrix, preprocessing, 2023-09-18T22:05:27,709 File "/tmp/pip-wheel-22e6rb4h/multidiff_84bcd384b39c41f68e6371d3b7e6d520/multidiff/diffusion_matrix.py", line 1, in 2023-09-18T22:05:27,710 import numpy as np 2023-09-18T22:05:27,711 File "/usr/local/lib/python3.11/dist-packages/numpy/__init__.py", line 139, in 2023-09-18T22:05:27,712 from . import core 2023-09-18T22:05:27,712 File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 49, in 2023-09-18T22:05:27,713 raise ImportError(msg) 2023-09-18T22:05:27,714 ImportError: 2023-09-18T22:05:27,716 IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 2023-09-18T22:05:27,718 Importing the numpy C-extensions failed. This error can happen for 2023-09-18T22:05:27,719 many reasons, often due to issues with your setup or how NumPy was 2023-09-18T22:05:27,719 installed. 2023-09-18T22:05:27,721 We have compiled some common reasons and troubleshooting tips at: 2023-09-18T22:05:27,722 https://numpy.org/devdocs/user/troubleshooting-importerror.html 2023-09-18T22:05:27,724 Please note and check the following: 2023-09-18T22:05:27,726 * The Python version is: Python3.11 from "/usr/bin/python3" 2023-09-18T22:05:27,727 * The NumPy version is: "1.25.2" 2023-09-18T22:05:27,728 and make sure that they are the versions you expect. 2023-09-18T22:05:27,729 Please carefully study the documentation linked above for further help. 2023-09-18T22:05:27,731 Original error was: libopenblas.so.0: cannot open shared object file: No such file or directory 2023-09-18T22:05:27,782 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-09-18T22:05:27,795 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-09-18T22:05:27,795 exec(compile('"'"''"'"''"'"' 2023-09-18T22:05:27,795 # This is -- a caller that pip uses to run setup.py 2023-09-18T22:05:27,795 # 2023-09-18T22:05:27,795 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-18T22:05:27,795 # import from `distutils.core` to work with newer packaging standards. 2023-09-18T22:05:27,795 # - It provides a clear error message when setuptools is not installed. 2023-09-18T22:05:27,795 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-18T22:05:27,795 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-18T22:05:27,795 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-18T22:05:27,795 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-18T22:05:27,795 import os, sys, tokenize 2023-09-18T22:05:27,795 2023-09-18T22:05:27,795 try: 2023-09-18T22:05:27,795 import setuptools 2023-09-18T22:05:27,795 except ImportError as error: 2023-09-18T22:05:27,795 print( 2023-09-18T22:05:27,795 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-18T22:05:27,795 "the build environment.", 2023-09-18T22:05:27,795 file=sys.stderr, 2023-09-18T22:05:27,795 ) 2023-09-18T22:05:27,795 sys.exit(1) 2023-09-18T22:05:27,795 2023-09-18T22:05:27,795 __file__ = %r 2023-09-18T22:05:27,795 sys.argv[0] = __file__ 2023-09-18T22:05:27,795 2023-09-18T22:05:27,795 if os.path.exists(__file__): 2023-09-18T22:05:27,795 filename = __file__ 2023-09-18T22:05:27,795 with tokenize.open(__file__) as f: 2023-09-18T22:05:27,795 setup_py_code = f.read() 2023-09-18T22:05:27,795 else: 2023-09-18T22:05:27,795 filename = "" 2023-09-18T22:05:27,795 setup_py_code = "from setuptools import setup; setup()" 2023-09-18T22:05:27,795 2023-09-18T22:05:27,795 exec(compile(setup_py_code, filename, "exec")) 2023-09-18T22:05:27,795 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-22e6rb4h/multidiff_84bcd384b39c41f68e6371d3b7e6d520/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-xxfku5tu[/] 2023-09-18T22:05:27,796 [bold magenta]cwd[/]: /tmp/pip-wheel-22e6rb4h/multidiff_84bcd384b39c41f68e6371d3b7e6d520/ 2023-09-18T22:05:27,797 Preparing metadata (setup.py): finished with status 'error' 2023-09-18T22:05:27,798 ERROR: [present-rich] metadata generation failed 2023-09-18T22:05:27,804 Exception information: 2023-09-18T22:05:27,804 Traceback (most recent call last): 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2023-09-18T22:05:27,804 call_subprocess( 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-09-18T22:05:27,804 raise error 2023-09-18T22:05:27,804 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-09-18T22:05:27,804 2023-09-18T22:05:27,804 The above exception was the direct cause of the following exception: 2023-09-18T22:05:27,804 2023-09-18T22:05:27,804 Traceback (most recent call last): 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-18T22:05:27,804 status = run_func(*args) 2023-09-18T22:05:27,804 ^^^^^^^^^^^^^^^ 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-18T22:05:27,804 return func(self, options, args) 2023-09-18T22:05:27,804 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2023-09-18T22:05:27,804 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-09-18T22:05:27,804 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-09-18T22:05:27,804 result = self._result = resolver.resolve( 2023-09-18T22:05:27,804 ^^^^^^^^^^^^^^^^^ 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2023-09-18T22:05:27,804 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-09-18T22:05:27,804 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2023-09-18T22:05:27,804 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2023-09-18T22:05:27,804 if not criterion.candidates: 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2023-09-18T22:05:27,804 return bool(self._sequence) 2023-09-18T22:05:27,804 ^^^^^^^^^^^^^^^^^^^^ 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-09-18T22:05:27,804 return any(self) 2023-09-18T22:05:27,804 ^^^^^^^^^ 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-09-18T22:05:27,804 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-09-18T22:05:27,804 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-09-18T22:05:27,804 candidate = func() 2023-09-18T22:05:27,804 ^^^^^^ 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-09-18T22:05:27,804 self._link_candidate_cache[link] = LinkCandidate( 2023-09-18T22:05:27,804 ^^^^^^^^^^^^^^ 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__ 2023-09-18T22:05:27,804 super().__init__( 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ 2023-09-18T22:05:27,804 self.dist = self._prepare() 2023-09-18T22:05:27,804 ^^^^^^^^^^^^^^^ 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare 2023-09-18T22:05:27,804 dist = self._prepare_distribution() 2023-09-18T22:05:27,804 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution 2023-09-18T22:05:27,804 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-09-18T22:05:27,804 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement 2023-09-18T22:05:27,804 return self._prepare_linked_requirement(req, parallel_builds) 2023-09-18T22:05:27,804 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement 2023-09-18T22:05:27,804 dist = _get_prepared_distribution( 2023-09-18T22:05:27,804 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-09-18T22:05:27,804 abstract_dist.prepare_distribution_metadata( 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-09-18T22:05:27,804 self.req.prepare_metadata() 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata 2023-09-18T22:05:27,804 self.metadata_directory = generate_metadata_legacy( 2023-09-18T22:05:27,804 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T22:05:27,804 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-09-18T22:05:27,804 raise MetadataGenerationFailed(package_details=details) from error 2023-09-18T22:05:27,804 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-09-18T22:05:27,817 Removed multidiff==0.2 from https://files.pythonhosted.org/packages/29/23/f3d6045488b1708967eeac4b24173818f2fbe02dd6a873599e26c63d60e1/multidiff-0.2.tar.gz from build tracker '/tmp/pip-build-tracker-ab2shscz' 2023-09-18T22:05:27,818 Removed build tracker: '/tmp/pip-build-tracker-ab2shscz'