2023-09-20T10:02:29,087 Created temporary directory: /tmp/pip-build-tracker-42965ihk 2023-09-20T10:02:29,089 Initialized build tracking at /tmp/pip-build-tracker-42965ihk 2023-09-20T10:02:29,089 Created build tracker: /tmp/pip-build-tracker-42965ihk 2023-09-20T10:02:29,089 Entered build tracker: /tmp/pip-build-tracker-42965ihk 2023-09-20T10:02:29,090 Created temporary directory: /tmp/pip-wheel-m6b4ow2j 2023-09-20T10:02:29,093 Created temporary directory: /tmp/pip-ephem-wheel-cache-vnu8siyg 2023-09-20T10:02:29,117 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-20T10:02:29,120 2 location(s) to search for versions of westpa: 2023-09-20T10:02:29,120 * https://pypi.org/simple/westpa/ 2023-09-20T10:02:29,120 * https://www.piwheels.org/simple/westpa/ 2023-09-20T10:02:29,121 Fetching project page and analyzing links: https://pypi.org/simple/westpa/ 2023-09-20T10:02:29,122 Getting page https://pypi.org/simple/westpa/ 2023-09-20T10:02:29,123 Found index url https://pypi.org/simple/ 2023-09-20T10:02:29,339 Fetched page https://pypi.org/simple/westpa/ as application/vnd.pypi.simple.v1+json 2023-09-20T10:02:29,346 Found link https://files.pythonhosted.org/packages/a8/57/c4b43d48677bb48b620e3f0cda3c71aa997ab3a039ba4ba0cb05d807df19/westpa-0.0.2.tar.gz (from https://pypi.org/simple/westpa/), version: 0.0.2 2023-09-20T10:02:29,347 Found link https://files.pythonhosted.org/packages/b0/49/26240704f4fcc44e3187b617d080c7b96a1f8b4004a79b19b189bf738a49/westpa-0.0.3.tar.gz (from https://pypi.org/simple/westpa/), version: 0.0.3 2023-09-20T10:02:29,348 Found link https://files.pythonhosted.org/packages/d6/81/c5fea3140456e5d1317e3ed32e1d5e01f2e9452cd100b0b3656b67cada3c/westpa-2.0.dev1.tar.gz (from https://pypi.org/simple/westpa/) (requires-python:>=3.6), version: 2.0.dev1 2023-09-20T10:02:29,349 Found link https://files.pythonhosted.org/packages/fe/e9/e9ef53a71a73dfe76a8875a8eb2ce1c16942a7878502270922c5fdc8016f/westpa-2.0b5.tar.gz (from https://pypi.org/simple/westpa/) (requires-python:>=3.6), version: 2.0b5 2023-09-20T10:02:29,350 Found link https://files.pythonhosted.org/packages/30/04/9821a74c5a60f831f54226e64454b172bfe7c5c84a505198aaa13058faa3/westpa-2022.1.tar.gz (from https://pypi.org/simple/westpa/) (requires-python:>=3.6), version: 2022.1 2023-09-20T10:02:29,351 Found link https://files.pythonhosted.org/packages/30/c8/6eb627254809162a3b520723f678de9788be3fa1377bd5d943561130e5c8/westpa-2022.2.tar.gz (from https://pypi.org/simple/westpa/) (requires-python:>=3.6), version: 2022.2 2023-09-20T10:02:29,352 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/69/0e/ec12d6ca2d3a2af50e8e93dc9a29731e37309751f2ec5786963638e73401/westpa-2022.3-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,352 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/b7/63/69efad20133b8ce5096cf01b8572116688e45d2eb874ac38de718ff50ede/westpa-2022.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,353 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/36/d2/76b2259196de2b10667808baf22c302cdac0e211f58d18a149dbd6974d25/westpa-2022.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,354 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/df/55/09ef147d70a6cb997d904f5094f05525ae5aa23ef9a7b0fe4a78448b7f83/westpa-2022.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,354 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/11/12/bab6b8aa12f6af86cbade87c82ce104e9b084dd5848b2cdd7894c4777c75/westpa-2022.3-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,355 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/b9/9c/9a76bebd1bd2a42e0cc16d21be5d84b89b4807a1a44875764188bb5b75ff/westpa-2022.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,355 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/9b/a3/e580004b1202a1f78f412994d2182e72dc029303e90e925e87f403387424/westpa-2022.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,356 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/30/f4/3dd7940c7c33b835729ea0c36429270aa9eba85f88eb3c9c72c16ae1b586/westpa-2022.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,357 Found link https://files.pythonhosted.org/packages/a1/a5/e82ed1cf2a3d3edd0350329da58d166bfff5601c07174076f76d3b7f2628/westpa-2022.3.tar.gz (from https://pypi.org/simple/westpa/) (requires-python:>=3.6), version: 2022.3 2023-09-20T10:02:29,358 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/52/68/14e017cd84baec15ea6b88544153ac57109e1711f3ceb8682743fb4c1b4c/westpa-2022.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,358 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/3e/d0/88ad29bc7956e1c060501043bffdf134a0464f62b84d52c370ac537bb03d/westpa-2022.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,359 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/21/41/a8e7663bc0836e3a7cb93e7be0bb6e47f31ae054bd499cbd36bf01911ce3/westpa-2022.4-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,359 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/fd/15/cc3188fb79584322e4af515bf31c25154bbf2aba5917d9da5dd0a1f491d5/westpa-2022.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,360 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/24/24/e4380e00ca84dd2ab03db35aba7c72451eacb92ebae0dbd3e9de0aa21165/westpa-2022.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,360 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/93/1f/f5a9032c1012a4f1ace13eb9093e1728f0d9d9a61f3869a6a6c6e2c034ce/westpa-2022.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,361 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/7c/82/4e7d62a526cf73294131f851c482a32d48e99ea5a925f67afea20b079055/westpa-2022.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,362 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/fc/33/5fcbfd10fc416548c71240e08f39a10e6c342aeea41664d383de4e5ce105/westpa-2022.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,363 Found link https://files.pythonhosted.org/packages/72/5e/c9bf1571544cc7b7806d6d847ac896febe714b9c9a1e3789e457399a91fd/westpa-2022.4.tar.gz (from https://pypi.org/simple/westpa/) (requires-python:>=3.6), version: 2022.4 2023-09-20T10:02:29,363 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/fa/9a/348dbaf04bf8c9a18b44a01d676e354154dbf25dd29b503d8aad12b979e5/westpa-2022.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,364 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/aa/1e/d71b9013e2d531b5e7c3bdbb841bdd8aa210ce69bccfcc0e5b7536f6f822/westpa-2022.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,365 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/09/8f/2e98390c7dd1d68e89ae77751f9c925bbd53ea436715bb3df29734a6ef1e/westpa-2022.5-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,365 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/10/54/1e68102cfc5256e817af48914a434a0ef39429d12be44edd9b123e45609f/westpa-2022.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,366 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/cf/ed/0d39fce58f3f524cce9ea157eb23606a1f9ec8774a474426f5407226da6c/westpa-2022.5-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,366 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/c6/81/72e1c125d71aa030efad147277a30c95fde09123a3afcb8d1b13e41561e0/westpa-2022.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,366 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/cd/0e/2d64005041bef9385c0b7064bfb332ca2aa383db3b7ea718eb50f738302c/westpa-2022.5-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,367 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/4b/fc/cb3f90c44be96986c1e2e84dd8ade75a0d027c980bbbc1a16cb57d7fb152/westpa-2022.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,367 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/75/ff/b7fa21ff0f42d9a6ed4d910a4caeac9bec6ad16e1448be93e4589466f122/westpa-2022.5-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,368 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/25/67/e625375bc0eec995ba44a95095357dfa53ff5c4c879050db17159ad82c11/westpa-2022.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,369 Found link https://files.pythonhosted.org/packages/3f/47/4b8d30ba9e1c2d6d37ed73e58cf643815e35f0f5cfa591aac166b5250a7f/westpa-2022.5.tar.gz (from https://pypi.org/simple/westpa/) (requires-python:>=3.6), version: 2022.5 2023-09-20T10:02:29,370 Fetching project page and analyzing links: https://www.piwheels.org/simple/westpa/ 2023-09-20T10:02:29,371 Getting page https://www.piwheels.org/simple/westpa/ 2023-09-20T10:02:29,372 Found index url https://www.piwheels.org/simple/ 2023-09-20T10:02:29,636 Fetched page https://www.piwheels.org/simple/westpa/ as text/html 2023-09-20T10:02:29,649 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.5-cp39-cp39-linux_armv7l.whl#sha256=dc3a16c2582e1b713fdfc52b6504297d44e84e5c6e8538cdab3b603659b22d4b (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,650 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.5-cp39-cp39-linux_armv6l.whl#sha256=dc3a16c2582e1b713fdfc52b6504297d44e84e5c6e8538cdab3b603659b22d4b (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,650 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.5-cp37-cp37m-linux_armv7l.whl#sha256=6d321f54582ced0d7e39f606c95fadd59509a9692dc648daaa1067964429efee (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,651 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.5-cp37-cp37m-linux_armv6l.whl#sha256=6d321f54582ced0d7e39f606c95fadd59509a9692dc648daaa1067964429efee (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,652 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.4-cp39-cp39-linux_armv7l.whl#sha256=1adb91bb4eb598a71a766ccec6dc257cb4a4b6823fc6388930d564a72d0de8d7 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,652 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.4-cp39-cp39-linux_armv6l.whl#sha256=1adb91bb4eb598a71a766ccec6dc257cb4a4b6823fc6388930d564a72d0de8d7 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,653 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.4-cp37-cp37m-linux_armv7l.whl#sha256=67bc07f5def229a4155f399a75dcc7899dbdd1c38d53f3a68f1113b6cff39d10 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,653 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.4-cp37-cp37m-linux_armv6l.whl#sha256=67bc07f5def229a4155f399a75dcc7899dbdd1c38d53f3a68f1113b6cff39d10 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,654 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.3-cp39-cp39-linux_armv7l.whl#sha256=367492cb97cca120064cada5515b1f843953994d9b05bf528714ea59b506054e (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,654 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.3-cp39-cp39-linux_armv6l.whl#sha256=367492cb97cca120064cada5515b1f843953994d9b05bf528714ea59b506054e (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,655 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.3-cp37-cp37m-linux_armv7l.whl#sha256=aef03bdc7de5e2a121a7556fb13895722a03a5fffc6eaa42589479d0904f809c (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,655 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.3-cp37-cp37m-linux_armv6l.whl#sha256=aef03bdc7de5e2a121a7556fb13895722a03a5fffc6eaa42589479d0904f809c (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,656 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.2-cp311-cp311-linux_armv7l.whl#sha256=6ccd1589517abffb4502649b7d3d560036c9d8fcf497015967a53d6c81f29aea (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,657 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.2-cp311-cp311-linux_armv6l.whl#sha256=6ccd1589517abffb4502649b7d3d560036c9d8fcf497015967a53d6c81f29aea (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,657 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.2-cp39-cp39-linux_armv7l.whl#sha256=8612efd8791ddd3a3061c62f950e19262acc2be82c6ff488fd82eefd517c6bb9 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,658 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.2-cp39-cp39-linux_armv6l.whl#sha256=8612efd8791ddd3a3061c62f950e19262acc2be82c6ff488fd82eefd517c6bb9 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,658 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.2-cp37-cp37m-linux_armv7l.whl#sha256=bad9dd07c3ff32f2282482caedc0b82c861fea2adeb9a7f4c07f62fec17c82f5 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,659 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.2-cp37-cp37m-linux_armv6l.whl#sha256=bad9dd07c3ff32f2282482caedc0b82c861fea2adeb9a7f4c07f62fec17c82f5 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,660 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.1-cp39-cp39-linux_armv7l.whl#sha256=20399dd4213b8187771d60f0f6a0aab6a48b8865887ba8e9c017318c1f19369d (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,660 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.1-cp39-cp39-linux_armv6l.whl#sha256=20399dd4213b8187771d60f0f6a0aab6a48b8865887ba8e9c017318c1f19369d (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,661 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.1-cp37-cp37m-linux_armv7l.whl#sha256=f19822caaaa1c0fb2b7c1a7147429df8125c622b19f139f29a031e4aeeffe46c (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,661 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.1-cp37-cp37m-linux_armv6l.whl#sha256=f19822caaaa1c0fb2b7c1a7147429df8125c622b19f139f29a031e4aeeffe46c (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,662 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0b5-cp311-cp311-linux_armv7l.whl#sha256=9f0593de33c94430b0a9806ee07880c9db8d1189512f3c3214e0e653cc6f494f (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,662 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0b5-cp311-cp311-linux_armv6l.whl#sha256=9f0593de33c94430b0a9806ee07880c9db8d1189512f3c3214e0e653cc6f494f (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,662 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0b5-cp39-cp39-linux_armv7l.whl#sha256=265f76630d30cd17eff4c3ec815f806705c85ae8128470bbc86f80728eca0577 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,663 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0b5-cp39-cp39-linux_armv6l.whl#sha256=265f76630d30cd17eff4c3ec815f806705c85ae8128470bbc86f80728eca0577 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,664 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0b5-cp37-cp37m-linux_armv7l.whl#sha256=e58d94fe97bced92cd8183a94b3ec32d3361426501e12211218f73838032bd40 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,664 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0b5-cp37-cp37m-linux_armv6l.whl#sha256=e58d94fe97bced92cd8183a94b3ec32d3361426501e12211218f73838032bd40 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,665 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0.dev1-cp311-cp311-linux_armv7l.whl#sha256=56758c934be9edaec03b117b8d3babd0af8f9b5a2b90e2141c5a2f0a28716b38 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,665 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0.dev1-cp311-cp311-linux_armv6l.whl#sha256=56758c934be9edaec03b117b8d3babd0af8f9b5a2b90e2141c5a2f0a28716b38 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,666 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0.dev1-cp39-cp39-linux_armv7l.whl#sha256=500629fe8f8e482464e9a60bc5b36d637ee23f35951b8f1ee229a452d0510a57 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,667 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0.dev1-cp39-cp39-linux_armv6l.whl#sha256=500629fe8f8e482464e9a60bc5b36d637ee23f35951b8f1ee229a452d0510a57 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,667 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0.dev1-cp37-cp37m-linux_armv7l.whl#sha256=2f29fa867961beab5862b4d3331b574743a7502341a3e6204756f9dce4374fd6 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,668 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0.dev1-cp37-cp37m-linux_armv6l.whl#sha256=2f29fa867961beab5862b4d3331b574743a7502341a3e6204756f9dce4374fd6 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2023-09-20T10:02:29,668 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.3-cp39-cp39-linux_armv7l.whl#sha256=ab08db8aa33ca1961dfe69ed87059da32ce65f1aa29d6bb022b7cab651f39766 (from https://www.piwheels.org/simple/westpa/) 2023-09-20T10:02:29,669 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.3-cp39-cp39-linux_armv6l.whl#sha256=ab08db8aa33ca1961dfe69ed87059da32ce65f1aa29d6bb022b7cab651f39766 (from https://www.piwheels.org/simple/westpa/) 2023-09-20T10:02:29,669 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.3-cp37-cp37m-linux_armv7l.whl#sha256=46ad4b8e3a72b7f3f633d7068c61ff09c546afaf7391cdadf507e4757283abe5 (from https://www.piwheels.org/simple/westpa/) 2023-09-20T10:02:29,669 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.3-cp37-cp37m-linux_armv6l.whl#sha256=46ad4b8e3a72b7f3f633d7068c61ff09c546afaf7391cdadf507e4757283abe5 (from https://www.piwheels.org/simple/westpa/) 2023-09-20T10:02:29,670 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.3-cp35-cp35m-linux_armv6l.whl#sha256=2d56e31ec6b4eb41aa74e6d9651effcd50d495f9344506d52c76dc17b3d8c273 (from https://www.piwheels.org/simple/westpa/) 2023-09-20T10:02:29,671 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.3-cp35-cp35m-linux_armv7l.whl#sha256=2d56e31ec6b4eb41aa74e6d9651effcd50d495f9344506d52c76dc17b3d8c273 (from https://www.piwheels.org/simple/westpa/) 2023-09-20T10:02:29,671 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.2-cp39-cp39-linux_armv7l.whl#sha256=8509f9b39ad64419d29b6f438ddb27216474513474b4f93982348610125b3bb8 (from https://www.piwheels.org/simple/westpa/) 2023-09-20T10:02:29,672 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.2-cp39-cp39-linux_armv6l.whl#sha256=8509f9b39ad64419d29b6f438ddb27216474513474b4f93982348610125b3bb8 (from https://www.piwheels.org/simple/westpa/) 2023-09-20T10:02:29,672 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.2-cp35-cp35m-linux_armv7l.whl#sha256=94be102c7e48aae37ae6d7e184182204193924634440f5439edddba2a23108db (from https://www.piwheels.org/simple/westpa/) 2023-09-20T10:02:29,673 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.2-cp35-cp35m-linux_armv6l.whl#sha256=94be102c7e48aae37ae6d7e184182204193924634440f5439edddba2a23108db (from https://www.piwheels.org/simple/westpa/) 2023-09-20T10:02:29,674 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.2-cp37-cp37m-linux_armv6l.whl#sha256=dee88fa69865b2bb166916e14cd5902f71b995e802ced263858b6d74197941fe (from https://www.piwheels.org/simple/westpa/) 2023-09-20T10:02:29,674 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.2-cp37-cp37m-linux_armv7l.whl#sha256=dee88fa69865b2bb166916e14cd5902f71b995e802ced263858b6d74197941fe (from https://www.piwheels.org/simple/westpa/) 2023-09-20T10:02:29,675 Skipping link: not a file: https://www.piwheels.org/simple/westpa/ 2023-09-20T10:02:29,676 Skipping link: not a file: https://pypi.org/simple/westpa/ 2023-09-20T10:02:29,695 Given no hashes to check 1 links for project 'westpa': discarding no candidates 2023-09-20T10:02:29,712 Collecting westpa==2022.3 2023-09-20T10:02:29,715 Created temporary directory: /tmp/pip-unpack-qm3b5owi 2023-09-20T10:02:29,944 Downloading westpa-2022.3.tar.gz (1.1 MB) 2023-09-20T10:02:30,720 Added westpa==2022.3 from https://files.pythonhosted.org/packages/a1/a5/e82ed1cf2a3d3edd0350329da58d166bfff5601c07174076f76d3b7f2628/westpa-2022.3.tar.gz to build tracker '/tmp/pip-build-tracker-42965ihk' 2023-09-20T10:02:30,728 Created temporary directory: /tmp/pip-build-env-j52h4v03 2023-09-20T10:02:30,732 Installing build dependencies: started 2023-09-20T10:02:30,733 Running command pip subprocess to install build dependencies 2023-09-20T10:02:31,857 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-20T10:02:32,344 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-20T10:02:34,181 Collecting setuptools>=40.8.0 2023-09-20T10:02:34,182 Obtaining dependency information for setuptools>=40.8.0 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-20T10:02:34,188 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-20T10:02:34,393 Collecting wheel 2023-09-20T10:02:34,411 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-20T10:02:35,798 Collecting Cython>=0.29.16 2023-09-20T10:02:35,799 Obtaining dependency information for Cython>=0.29.16 from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-20T10:02:35,806 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-20T10:02:35,915 Collecting oldest-supported-numpy 2023-09-20T10:02:35,929 Using cached https://www.piwheels.org/simple/oldest-supported-numpy/oldest_supported_numpy-2023.8.3-py3-none-any.whl (4.8 kB) 2023-09-20T10:02:36,306 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/99/f1/c00d6be56e1a718a3068079e3ec8ce044d7179345280f6a3f5066068af0d/scipy-1.6.2.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.10) 2023-09-20T10:02:36,310 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/fe/fd/8704c7b7b34cdac850485e638346025ca57c5a859934b9aa1be5399b33b7/scipy-1.6.3.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.10) 2023-09-20T10:02:36,315 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/bb/bb/944f559d554df6c9adf037aa9fc982a9706ee0e96c0d5beac701cb158900/scipy-1.7.0.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.10) 2023-09-20T10:02:36,320 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/47/33/a24aec22b7be7fdb10ec117a95e1e4099890d8bbc6646902f443fc7719d1/scipy-1.7.1.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.10) 2023-09-20T10:02:36,326 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/0e/23/58c4f995475a2a97cb5f4a032aedaf881ad87cd976a7180c55118d105a1d/scipy-1.7.2.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.11) 2023-09-20T10:02:36,333 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/61/67/1a654b96309c991762ee9bc39c363fc618076b155fe52d295211cf2536c7/scipy-1.7.3.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.11) 2023-09-20T10:02:36,339 Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/c0/ad/e3c052ed4e0027a8abef0a5e8441a044427d252d17d9aee06d56e62fc698/scipy-1.8.0rc1.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2023-09-20T10:02:36,344 Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/29/d2/151a54944b333e465f98804dced31dab1284f3c37b752b9cefa710b64681/scipy-1.8.0rc2.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2023-09-20T10:02:36,350 Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/e4/26/83dd1c6378513a6241d984bda9f08c512b6e35fff13fba3acc1b3c195f02/scipy-1.8.0rc3.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2023-09-20T10:02:36,355 Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/22/78/056cc43e7737811b6f50886788a940f852773dd9804f5365952805db9648/scipy-1.8.0rc4.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2023-09-20T10:02:36,360 Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/b4/a2/4faa34bf0cdbefd5c706625f1234987795f368eb4e97bde9d6f46860843e/scipy-1.8.0.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2023-09-20T10:02:36,366 Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/26/b5/9330f004b9a3b2b6a31f59f46f1617ce9ca15c0e7fe64288c20385a05c9d/scipy-1.8.1.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2023-09-20T10:02:36,568 Collecting scipy>=0.19.1 2023-09-20T10:02:41,060 Using cached https://www.piwheels.org/simple/scipy/scipy-1.11.2-cp311-cp311-linux_armv7l.whl (65.1 MB) 2023-09-20T10:02:43,423 Collecting versioneer-518 2023-09-20T10:02:43,441 Using cached https://www.piwheels.org/simple/versioneer-518/versioneer_518-0.19-py2.py3-none-any.whl (17 kB) 2023-09-20T10:02:44,493 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-20T10:02:44,502 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-20T10:02:44,509 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-20T10:02:44,516 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-20T10:02:44,524 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-20T10:02:44,902 Collecting numpy==1.23.2 (from oldest-supported-numpy) 2023-09-20T10:02:45,790 Using cached https://www.piwheels.org/simple/numpy/numpy-1.23.2-cp311-cp311-linux_armv7l.whl (12.4 MB) 2023-09-20T10:02:46,313 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-20T10:02:46,352 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-20T10:02:48,995 Installing collected packages: versioneer-518, wheel, setuptools, numpy, Cython, scipy, oldest-supported-numpy 2023-09-20T10:02:49,331 Creating /tmp/pip-build-env-j52h4v03/overlay/local/bin 2023-09-20T10:02:49,333 changing mode of /tmp/pip-build-env-j52h4v03/overlay/local/bin/wheel to 755 2023-09-20T10:02:59,834 changing mode of /tmp/pip-build-env-j52h4v03/overlay/local/bin/f2py to 755 2023-09-20T10:02:59,836 changing mode of /tmp/pip-build-env-j52h4v03/overlay/local/bin/f2py3 to 755 2023-09-20T10:02:59,838 changing mode of /tmp/pip-build-env-j52h4v03/overlay/local/bin/f2py3.11 to 755 2023-09-20T10:03:02,528 changing mode of /tmp/pip-build-env-j52h4v03/overlay/local/bin/cygdb to 755 2023-09-20T10:03:02,530 changing mode of /tmp/pip-build-env-j52h4v03/overlay/local/bin/cython to 755 2023-09-20T10:03:02,532 changing mode of /tmp/pip-build-env-j52h4v03/overlay/local/bin/cythonize to 755 2023-09-20T10:03:16,047 Successfully installed Cython-3.0.2 numpy-1.23.2 oldest-supported-numpy-2023.8.3 scipy-1.11.2 setuptools-68.2.2 versioneer-518-0.19 wheel-0.41.2 2023-09-20T10:03:16,736 Installing build dependencies: finished with status 'done' 2023-09-20T10:03:16,740 Getting requirements to build wheel: started 2023-09-20T10:03:16,741 Running command Getting requirements to build wheel 2023-09-20T10:03:38,568 warning: src/westpa/core/reweight/_reweight.pyx:351:13: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2023-09-20T10:03:38,568 warning: src/westpa/core/reweight/_reweight.pyx:351:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2023-09-20T10:03:38,568 warning: src/westpa/core/reweight/_reweight.pyx:351:32: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2023-09-20T10:03:38,569 warning: src/westpa/core/reweight/_reweight.pyx:352:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2023-09-20T10:03:38,569 warning: src/westpa/core/reweight/_reweight.pyx:352:24: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2023-09-20T10:03:38,570 warning: src/westpa/core/reweight/_reweight.pyx:352:35: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2023-09-20T10:03:38,571 warning: src/westpa/core/reweight/_reweight.pyx:352:46: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2023-09-20T10:03:38,572 warning: src/westpa/core/reweight/_reweight.pyx:352:54: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2023-09-20T10:03:52,860 Compiling src/westpa/fasthist/_fasthist.pyx because it changed. 2023-09-20T10:03:52,861 Compiling src/westpa/trajtree/_trajtree.pyx because it changed. 2023-09-20T10:03:52,862 Compiling src/westpa/mclib/_mclib.pyx because it changed. 2023-09-20T10:03:52,862 Compiling src/westpa/core/binning/_assign.pyx because it changed. 2023-09-20T10:03:52,863 Compiling src/westpa/core/kinetics/_kinetics.pyx because it changed. 2023-09-20T10:03:52,863 Compiling src/westpa/core/reweight/_reweight.pyx because it changed. 2023-09-20T10:03:52,864 [1/6] Cythonizing src/westpa/core/binning/_assign.pyx 2023-09-20T10:03:52,865 [2/6] Cythonizing src/westpa/core/kinetics/_kinetics.pyx 2023-09-20T10:03:52,865 [3/6] Cythonizing src/westpa/core/reweight/_reweight.pyx 2023-09-20T10:03:52,866 [4/6] Cythonizing src/westpa/fasthist/_fasthist.pyx 2023-09-20T10:03:52,866 [5/6] Cythonizing src/westpa/mclib/_mclib.pyx 2023-09-20T10:03:52,867 [6/6] Cythonizing src/westpa/trajtree/_trajtree.pyx 2023-09-20T10:03:52,915 /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:314: InformationOnly: Normalizing '2022.03' to '2022.3' 2023-09-20T10:03:52,915 self.metadata.version = self._normalize_version( 2023-09-20T10:03:52,947 running egg_info 2023-09-20T10:03:52,953 writing src/westpa.egg-info/PKG-INFO 2023-09-20T10:03:52,959 writing dependency_links to src/westpa.egg-info/dependency_links.txt 2023-09-20T10:03:52,962 writing entry points to src/westpa.egg-info/entry_points.txt 2023-09-20T10:03:52,965 writing requirements to src/westpa.egg-info/requires.txt 2023-09-20T10:03:52,966 writing top-level names to src/westpa.egg-info/top_level.txt 2023-09-20T10:03:53,009 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,010 dependency 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be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,012 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,013 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,014 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,014 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,015 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,016 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,016 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,017 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,017 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,018 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,019 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,019 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,020 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,020 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,021 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,021 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,022 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,022 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,023 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,023 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,024 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,024 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,025 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,025 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:53,026 reading manifest file 'src/westpa.egg-info/SOURCES.txt' 2023-09-20T10:03:53,028 reading manifest template 'MANIFEST.in' 2023-09-20T10:03:53,049 adding license file 'LICENSE' 2023-09-20T10:03:53,050 adding license file 'AUTHORS' 2023-09-20T10:03:53,057 writing manifest file 'src/westpa.egg-info/SOURCES.txt' 2023-09-20T10:03:53,599 Getting requirements to build wheel: finished with status 'done' 2023-09-20T10:03:53,609 Created temporary directory: /tmp/pip-modern-metadata-721z4462 2023-09-20T10:03:53,611 Preparing metadata (pyproject.toml): started 2023-09-20T10:03:53,613 Running command Preparing metadata (pyproject.toml) 2023-09-20T10:03:55,281 /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:314: InformationOnly: Normalizing '2022.03' to '2022.3' 2023-09-20T10:03:55,281 self.metadata.version = self._normalize_version( 2023-09-20T10:03:55,320 running dist_info 2023-09-20T10:03:55,323 creating /tmp/pip-modern-metadata-721z4462/westpa.egg-info 2023-09-20T10:03:55,328 writing /tmp/pip-modern-metadata-721z4462/westpa.egg-info/PKG-INFO 2023-09-20T10:03:55,335 writing dependency_links to /tmp/pip-modern-metadata-721z4462/westpa.egg-info/dependency_links.txt 2023-09-20T10:03:55,338 writing entry points to /tmp/pip-modern-metadata-721z4462/westpa.egg-info/entry_points.txt 2023-09-20T10:03:55,341 writing requirements to /tmp/pip-modern-metadata-721z4462/westpa.egg-info/requires.txt 2023-09-20T10:03:55,342 writing top-level names to /tmp/pip-modern-metadata-721z4462/westpa.egg-info/top_level.txt 2023-09-20T10:03:55,344 writing manifest file '/tmp/pip-modern-metadata-721z4462/westpa.egg-info/SOURCES.txt' 2023-09-20T10:03:55,369 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,369 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,370 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,370 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,371 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,371 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,372 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,373 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,373 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,374 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,375 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,375 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,376 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,376 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,377 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,378 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,378 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,379 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,379 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,380 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,380 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,381 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,381 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,382 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,383 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,383 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,384 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,384 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,385 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,386 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:03:55,387 reading manifest file '/tmp/pip-modern-metadata-721z4462/westpa.egg-info/SOURCES.txt' 2023-09-20T10:03:55,389 reading manifest template 'MANIFEST.in' 2023-09-20T10:03:55,410 adding license file 'LICENSE' 2023-09-20T10:03:55,411 adding license file 'AUTHORS' 2023-09-20T10:03:55,417 writing manifest file '/tmp/pip-modern-metadata-721z4462/westpa.egg-info/SOURCES.txt' 2023-09-20T10:03:55,422 creating '/tmp/pip-modern-metadata-721z4462/westpa-2022.3.dist-info' 2023-09-20T10:03:55,670 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-20T10:03:55,674 Source in /tmp/pip-wheel-m6b4ow2j/westpa_b431f197189a40688066403a8a911f61 has version 2022.3, which satisfies requirement westpa==2022.3 from https://files.pythonhosted.org/packages/a1/a5/e82ed1cf2a3d3edd0350329da58d166bfff5601c07174076f76d3b7f2628/westpa-2022.3.tar.gz 2023-09-20T10:03:55,675 Removed westpa==2022.3 from https://files.pythonhosted.org/packages/a1/a5/e82ed1cf2a3d3edd0350329da58d166bfff5601c07174076f76d3b7f2628/westpa-2022.3.tar.gz from build tracker '/tmp/pip-build-tracker-42965ihk' 2023-09-20T10:03:55,681 Created temporary directory: /tmp/pip-unpack-s3v20y6b 2023-09-20T10:03:55,682 Created temporary directory: /tmp/pip-unpack-r28rcre7 2023-09-20T10:03:55,719 Building wheels for collected packages: westpa 2023-09-20T10:03:55,723 Created temporary directory: /tmp/pip-wheel-i8ss5mc6 2023-09-20T10:03:55,724 Destination directory: /tmp/pip-wheel-i8ss5mc6 2023-09-20T10:03:55,726 Building wheel for westpa (pyproject.toml): started 2023-09-20T10:03:55,727 Running command Building wheel for westpa (pyproject.toml) 2023-09-20T10:03:57,303 /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:314: InformationOnly: Normalizing '2022.03' to '2022.3' 2023-09-20T10:03:57,303 self.metadata.version = self._normalize_version( 2023-09-20T10:03:57,375 running bdist_wheel 2023-09-20T10:03:57,391 running build 2023-09-20T10:03:57,391 running build_py 2023-09-20T10:03:57,395 creating build 2023-09-20T10:03:57,396 creating build/lib.linux-armv7l-cpython-311 2023-09-20T10:03:57,396 creating build/lib.linux-armv7l-cpython-311/westpa 2023-09-20T10:03:57,398 copying src/westpa/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa 2023-09-20T10:03:57,399 copying src/westpa/_version.py -> build/lib.linux-armv7l-cpython-311/westpa 2023-09-20T10:03:57,401 creating build/lib.linux-armv7l-cpython-311/westpa/westext 2023-09-20T10:03:57,402 copying src/westpa/westext/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/westext 2023-09-20T10:03:57,404 creating build/lib.linux-armv7l-cpython-311/westpa/cli 2023-09-20T10:03:57,405 copying src/westpa/cli/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/cli 2023-09-20T10:03:57,407 creating build/lib.linux-armv7l-cpython-311/westpa/tools 2023-09-20T10:03:57,408 copying src/westpa/tools/kinetics_tool.py -> build/lib.linux-armv7l-cpython-311/westpa/tools 2023-09-20T10:03:57,411 copying src/westpa/tools/progress.py -> build/lib.linux-armv7l-cpython-311/westpa/tools 2023-09-20T10:03:57,412 copying src/westpa/tools/binning.py -> build/lib.linux-armv7l-cpython-311/westpa/tools 2023-09-20T10:03:57,415 copying src/westpa/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/tools 2023-09-20T10:03:57,416 copying src/westpa/tools/data_reader.py -> build/lib.linux-armv7l-cpython-311/westpa/tools 2023-09-20T10:03:57,419 copying src/westpa/tools/wipi.py -> build/lib.linux-armv7l-cpython-311/westpa/tools 2023-09-20T10:03:57,421 copying src/westpa/tools/selected_segs.py -> build/lib.linux-armv7l-cpython-311/westpa/tools 2023-09-20T10:03:57,423 copying src/westpa/tools/dtypes.py -> build/lib.linux-armv7l-cpython-311/westpa/tools 2023-09-20T10:03:57,425 copying src/westpa/tools/iter_range.py -> build/lib.linux-armv7l-cpython-311/westpa/tools 2023-09-20T10:03:57,427 copying src/westpa/tools/plot.py -> build/lib.linux-armv7l-cpython-311/westpa/tools 2023-09-20T10:03:57,429 copying src/westpa/tools/core.py -> build/lib.linux-armv7l-cpython-311/westpa/tools 2023-09-20T10:03:57,432 creating build/lib.linux-armv7l-cpython-311/westpa/oldtools 2023-09-20T10:03:57,433 copying src/westpa/oldtools/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools 2023-09-20T10:03:57,435 copying src/westpa/oldtools/files.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools 2023-09-20T10:03:57,436 copying src/westpa/oldtools/miscfn.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools 2023-09-20T10:03:57,439 creating build/lib.linux-armv7l-cpython-311/westpa/analysis 2023-09-20T10:03:57,439 copying src/westpa/analysis/trajectories.py -> build/lib.linux-armv7l-cpython-311/westpa/analysis 2023-09-20T10:03:57,442 copying src/westpa/analysis/statistics.py -> build/lib.linux-armv7l-cpython-311/westpa/analysis 2023-09-20T10:03:57,443 copying src/westpa/analysis/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/analysis 2023-09-20T10:03:57,445 copying src/westpa/analysis/core.py -> build/lib.linux-armv7l-cpython-311/westpa/analysis 2023-09-20T10:03:57,448 creating build/lib.linux-armv7l-cpython-311/westpa/core 2023-09-20T10:03:57,449 copying src/westpa/core/yamlcfg.py -> build/lib.linux-armv7l-cpython-311/westpa/core 2023-09-20T10:03:57,451 copying src/westpa/core/progress.py -> build/lib.linux-armv7l-cpython-311/westpa/core 2023-09-20T10:03:57,454 copying src/westpa/core/h5io.py -> build/lib.linux-armv7l-cpython-311/westpa/core 2023-09-20T10:03:57,456 copying src/westpa/core/data_manager.py -> build/lib.linux-armv7l-cpython-311/westpa/core 2023-09-20T10:03:57,460 copying src/westpa/core/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/core 2023-09-20T10:03:57,461 copying src/westpa/core/extloader.py -> build/lib.linux-armv7l-cpython-311/westpa/core 2023-09-20T10:03:57,463 copying src/westpa/core/_rc.py -> build/lib.linux-armv7l-cpython-311/westpa/core 2023-09-20T10:03:57,466 copying src/westpa/core/we_driver.py -> build/lib.linux-armv7l-cpython-311/westpa/core 2023-09-20T10:03:57,469 copying src/westpa/core/states.py -> build/lib.linux-armv7l-cpython-311/westpa/core 2023-09-20T10:03:57,471 copying src/westpa/core/trajectory.py -> build/lib.linux-armv7l-cpython-311/westpa/core 2023-09-20T10:03:57,473 copying src/westpa/core/wm_ops.py -> build/lib.linux-armv7l-cpython-311/westpa/core 2023-09-20T10:03:57,475 copying src/westpa/core/systems.py -> build/lib.linux-armv7l-cpython-311/westpa/core 2023-09-20T10:03:57,477 copying src/westpa/core/textio.py -> build/lib.linux-armv7l-cpython-311/westpa/core 2023-09-20T10:03:57,478 copying src/westpa/core/sim_manager.py -> build/lib.linux-armv7l-cpython-311/westpa/core 2023-09-20T10:03:57,481 copying src/westpa/core/segment.py -> build/lib.linux-armv7l-cpython-311/westpa/core 2023-09-20T10:03:57,484 creating build/lib.linux-armv7l-cpython-311/westpa/fasthist 2023-09-20T10:03:57,485 copying src/westpa/fasthist/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/fasthist 2023-09-20T10:03:57,486 copying src/westpa/fasthist/__main__.py -> build/lib.linux-armv7l-cpython-311/westpa/fasthist 2023-09-20T10:03:57,489 creating build/lib.linux-armv7l-cpython-311/westpa/mclib 2023-09-20T10:03:57,490 copying src/westpa/mclib/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/mclib 2023-09-20T10:03:57,492 copying src/westpa/mclib/__main__.py -> build/lib.linux-armv7l-cpython-311/westpa/mclib 2023-09-20T10:03:57,494 creating build/lib.linux-armv7l-cpython-311/westpa/work_managers 2023-09-20T10:03:57,495 copying src/westpa/work_managers/threads.py -> build/lib.linux-armv7l-cpython-311/westpa/work_managers 2023-09-20T10:03:57,497 copying src/westpa/work_managers/mpi.py -> build/lib.linux-armv7l-cpython-311/westpa/work_managers 2023-09-20T10:03:57,499 copying src/westpa/work_managers/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/work_managers 2023-09-20T10:03:57,501 copying src/westpa/work_managers/serial.py -> build/lib.linux-armv7l-cpython-311/westpa/work_managers 2023-09-20T10:03:57,503 copying src/westpa/work_managers/processes.py -> build/lib.linux-armv7l-cpython-311/westpa/work_managers 2023-09-20T10:03:57,506 copying src/westpa/work_managers/environment.py -> build/lib.linux-armv7l-cpython-311/westpa/work_managers 2023-09-20T10:03:57,508 copying src/westpa/work_managers/core.py -> build/lib.linux-armv7l-cpython-311/westpa/work_managers 2023-09-20T10:03:57,511 creating build/lib.linux-armv7l-cpython-311/westpa/trajtree 2023-09-20T10:03:57,512 copying src/westpa/trajtree/trajtree.py -> build/lib.linux-armv7l-cpython-311/westpa/trajtree 2023-09-20T10:03:57,514 copying src/westpa/trajtree/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/trajtree 2023-09-20T10:03:57,516 creating build/lib.linux-armv7l-cpython-311/westpa/westext/hamsm_restarting 2023-09-20T10:03:57,517 copying src/westpa/westext/hamsm_restarting/example_overrides.py -> build/lib.linux-armv7l-cpython-311/westpa/westext/hamsm_restarting 2023-09-20T10:03:57,518 copying src/westpa/westext/hamsm_restarting/restart_driver.py -> build/lib.linux-armv7l-cpython-311/westpa/westext/hamsm_restarting 2023-09-20T10:03:57,521 copying src/westpa/westext/hamsm_restarting/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/westext/hamsm_restarting 2023-09-20T10:03:57,523 creating build/lib.linux-armv7l-cpython-311/westpa/westext/weed 2023-09-20T10:03:57,524 copying src/westpa/westext/weed/ProbAdjustEquil.py -> build/lib.linux-armv7l-cpython-311/westpa/westext/weed 2023-09-20T10:03:57,526 copying src/westpa/westext/weed/UncertMath.py -> build/lib.linux-armv7l-cpython-311/westpa/westext/weed 2023-09-20T10:03:57,528 copying src/westpa/westext/weed/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/westext/weed 2023-09-20T10:03:57,530 copying src/westpa/westext/weed/weed_driver.py -> build/lib.linux-armv7l-cpython-311/westpa/westext/weed 2023-09-20T10:03:57,532 copying src/westpa/westext/weed/BinCluster.py -> build/lib.linux-armv7l-cpython-311/westpa/westext/weed 2023-09-20T10:03:57,535 creating build/lib.linux-armv7l-cpython-311/westpa/westext/wess 2023-09-20T10:03:57,536 copying src/westpa/westext/wess/ProbAdjust.py -> build/lib.linux-armv7l-cpython-311/westpa/westext/wess 2023-09-20T10:03:57,539 copying src/westpa/westext/wess/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/westext/wess 2023-09-20T10:03:57,540 copying src/westpa/westext/wess/wess_driver.py -> build/lib.linux-armv7l-cpython-311/westpa/westext/wess 2023-09-20T10:03:57,544 creating build/lib.linux-armv7l-cpython-311/westpa/westext/adaptvoronoi 2023-09-20T10:03:57,545 copying src/westpa/westext/adaptvoronoi/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/westext/adaptvoronoi 2023-09-20T10:03:57,547 copying src/westpa/westext/adaptvoronoi/adaptVor_driver.py -> build/lib.linux-armv7l-cpython-311/westpa/westext/adaptvoronoi 2023-09-20T10:03:57,550 creating build/lib.linux-armv7l-cpython-311/westpa/westext/stringmethod 2023-09-20T10:03:57,551 copying src/westpa/westext/stringmethod/string_method.py -> build/lib.linux-armv7l-cpython-311/westpa/westext/stringmethod 2023-09-20T10:03:57,553 copying src/westpa/westext/stringmethod/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/westext/stringmethod 2023-09-20T10:03:57,555 copying src/westpa/westext/stringmethod/string_driver.py -> build/lib.linux-armv7l-cpython-311/westpa/westext/stringmethod 2023-09-20T10:03:57,557 copying src/westpa/westext/stringmethod/fourier_fitting.py -> build/lib.linux-armv7l-cpython-311/westpa/westext/stringmethod 2023-09-20T10:03:57,560 creating build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,561 copying src/westpa/cli/tools/w_trace.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,563 copying src/westpa/cli/tools/w_postanalysis_matrix.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,565 copying src/westpa/cli/tools/w_postanalysis_reweight.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,567 copying src/westpa/cli/tools/w_reweight.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,570 copying src/westpa/cli/tools/w_select.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,572 copying src/westpa/cli/tools/w_ntop.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,574 copying src/westpa/cli/tools/plothist.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,576 copying src/westpa/cli/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,578 copying src/westpa/cli/tools/w_crawl.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,580 copying src/westpa/cli/tools/w_assign.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,582 copying src/westpa/cli/tools/w_direct.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,584 copying src/westpa/cli/tools/ploterr.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,587 copying src/westpa/cli/tools/w_kinavg.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,588 copying src/westpa/cli/tools/w_bins.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,590 copying src/westpa/cli/tools/w_kinetics.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,592 copying src/westpa/cli/tools/w_fluxanl.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,594 copying src/westpa/cli/tools/w_dumpsegs.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,596 copying src/westpa/cli/tools/w_ipa.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,599 copying src/westpa/cli/tools/w_red.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,601 copying src/westpa/cli/tools/w_stateprobs.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,603 copying src/westpa/cli/tools/w_pdist.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,605 copying src/westpa/cli/tools/w_multi_west.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,607 copying src/westpa/cli/tools/w_eddist.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/tools 2023-09-20T10:03:57,610 creating build/lib.linux-armv7l-cpython-311/westpa/cli/core 2023-09-20T10:03:57,611 copying src/westpa/cli/core/w_succ.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/core 2023-09-20T10:03:57,613 copying src/westpa/cli/core/w_states.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/core 2023-09-20T10:03:57,615 copying src/westpa/cli/core/w_init.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/core 2023-09-20T10:03:57,618 copying src/westpa/cli/core/w_truncate.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/core 2023-09-20T10:03:57,619 copying src/westpa/cli/core/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/core 2023-09-20T10:03:57,621 copying src/westpa/cli/core/w_fork.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/core 2023-09-20T10:03:57,623 copying src/westpa/cli/core/w_run.py -> build/lib.linux-armv7l-cpython-311/westpa/cli/core 2023-09-20T10:03:57,625 creating build/lib.linux-armv7l-cpython-311/westpa/oldtools/stats 2023-09-20T10:03:57,626 copying src/westpa/oldtools/stats/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/stats 2023-09-20T10:03:57,628 copying src/westpa/oldtools/stats/mcbs.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/stats 2023-09-20T10:03:57,629 copying src/westpa/oldtools/stats/edfs.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/stats 2023-09-20T10:03:57,631 copying src/westpa/oldtools/stats/accumulator.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/stats 2023-09-20T10:03:57,633 creating build/lib.linux-armv7l-cpython-311/westpa/oldtools/cmds 2023-09-20T10:03:57,634 copying src/westpa/oldtools/cmds/w_ttimes.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/cmds 2023-09-20T10:03:57,637 copying src/westpa/oldtools/cmds/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/cmds 2023-09-20T10:03:57,639 creating build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe 2023-09-20T10:03:57,640 copying src/westpa/oldtools/aframe/plotting.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe 2023-09-20T10:03:57,642 copying src/westpa/oldtools/aframe/base_mixin.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe 2023-09-20T10:03:57,643 copying src/westpa/oldtools/aframe/output.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe 2023-09-20T10:03:57,645 copying src/westpa/oldtools/aframe/trajwalker.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe 2023-09-20T10:03:57,647 copying src/westpa/oldtools/aframe/binning.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe 2023-09-20T10:03:57,648 copying src/westpa/oldtools/aframe/transitions.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe 2023-09-20T10:03:57,651 copying src/westpa/oldtools/aframe/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe 2023-09-20T10:03:57,652 copying src/westpa/oldtools/aframe/mcbs.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe 2023-09-20T10:03:57,654 copying src/westpa/oldtools/aframe/data_reader.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe 2023-09-20T10:03:57,656 copying src/westpa/oldtools/aframe/kinetics.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe 2023-09-20T10:03:57,658 copying src/westpa/oldtools/aframe/atool.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe 2023-09-20T10:03:57,660 copying src/westpa/oldtools/aframe/iter_range.py -> build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe 2023-09-20T10:03:57,662 creating build/lib.linux-armv7l-cpython-311/westpa/core/binning 2023-09-20T10:03:57,663 copying src/westpa/core/binning/mab_driver.py -> build/lib.linux-armv7l-cpython-311/westpa/core/binning 2023-09-20T10:03:57,665 copying src/westpa/core/binning/binless.py -> build/lib.linux-armv7l-cpython-311/westpa/core/binning 2023-09-20T10:03:57,667 copying src/westpa/core/binning/binless_driver.py -> build/lib.linux-armv7l-cpython-311/westpa/core/binning 2023-09-20T10:03:57,668 copying src/westpa/core/binning/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/core/binning 2023-09-20T10:03:57,670 copying src/westpa/core/binning/mab_manager.py -> build/lib.linux-armv7l-cpython-311/westpa/core/binning 2023-09-20T10:03:57,672 copying src/westpa/core/binning/mab.py -> build/lib.linux-armv7l-cpython-311/westpa/core/binning 2023-09-20T10:03:57,675 copying src/westpa/core/binning/bins.py -> build/lib.linux-armv7l-cpython-311/westpa/core/binning 2023-09-20T10:03:57,676 copying src/westpa/core/binning/binless_manager.py -> build/lib.linux-armv7l-cpython-311/westpa/core/binning 2023-09-20T10:03:57,678 copying src/westpa/core/binning/assign.py -> build/lib.linux-armv7l-cpython-311/westpa/core/binning 2023-09-20T10:03:57,681 creating build/lib.linux-armv7l-cpython-311/westpa/core/propagators 2023-09-20T10:03:57,682 copying src/westpa/core/propagators/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/core/propagators 2023-09-20T10:03:57,684 copying src/westpa/core/propagators/executable.py -> build/lib.linux-armv7l-cpython-311/westpa/core/propagators 2023-09-20T10:03:57,687 creating build/lib.linux-armv7l-cpython-311/westpa/core/reweight 2023-09-20T10:03:57,688 copying src/westpa/core/reweight/matrix.py -> build/lib.linux-armv7l-cpython-311/westpa/core/reweight 2023-09-20T10:03:57,690 copying src/westpa/core/reweight/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/core/reweight 2023-09-20T10:03:57,692 creating build/lib.linux-armv7l-cpython-311/westpa/core/kinetics 2023-09-20T10:03:57,693 copying src/westpa/core/kinetics/events.py -> build/lib.linux-armv7l-cpython-311/westpa/core/kinetics 2023-09-20T10:03:57,695 copying src/westpa/core/kinetics/matrates.py -> build/lib.linux-armv7l-cpython-311/westpa/core/kinetics 2023-09-20T10:03:57,697 copying src/westpa/core/kinetics/rate_averaging.py -> build/lib.linux-armv7l-cpython-311/westpa/core/kinetics 2023-09-20T10:03:57,699 copying src/westpa/core/kinetics/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/core/kinetics 2023-09-20T10:03:57,701 creating build/lib.linux-armv7l-cpython-311/westpa/work_managers/zeromq 2023-09-20T10:03:57,702 copying src/westpa/work_managers/zeromq/worker.py -> build/lib.linux-armv7l-cpython-311/westpa/work_managers/zeromq 2023-09-20T10:03:57,705 copying src/westpa/work_managers/zeromq/work_manager.py -> build/lib.linux-armv7l-cpython-311/westpa/work_managers/zeromq 2023-09-20T10:03:57,708 copying src/westpa/work_managers/zeromq/__init__.py -> build/lib.linux-armv7l-cpython-311/westpa/work_managers/zeromq 2023-09-20T10:03:57,710 copying src/westpa/work_managers/zeromq/node.py -> build/lib.linux-armv7l-cpython-311/westpa/work_managers/zeromq 2023-09-20T10:03:57,712 copying src/westpa/work_managers/zeromq/core.py -> build/lib.linux-armv7l-cpython-311/westpa/work_managers/zeromq 2023-09-20T10:03:57,730 UPDATING build/lib.linux-armv7l-cpython-311/westpa/_version.py 2023-09-20T10:03:57,730 set build/lib.linux-armv7l-cpython-311/westpa/_version.py to '2022.03' 2023-09-20T10:03:57,731 running build_ext 2023-09-20T10:03:57,739 building 'westpa.fasthist._fasthist' extension 2023-09-20T10:03:57,739 creating build/temp.linux-armv7l-cpython-311 2023-09-20T10:03:57,740 creating build/temp.linux-armv7l-cpython-311/src 2023-09-20T10:03:57,740 creating build/temp.linux-armv7l-cpython-311/src/westpa 2023-09-20T10:03:57,741 creating build/temp.linux-armv7l-cpython-311/src/westpa/fasthist 2023-09-20T10:03:57,742 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/westpa/fasthist/_fasthist.c -o build/temp.linux-armv7l-cpython-311/src/westpa/fasthist/_fasthist.o -O3 2023-09-20T10:03:58,135 In file included from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-20T10:03:58,136 from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-20T10:03:58,136 from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-20T10:03:58,137 from src/westpa/fasthist/_fasthist.c:1179: 2023-09-20T10:03:58,138 /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-20T10:03:58,138 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-20T10:03:58,139 | ^~~~~~~ 2023-09-20T10:04:34,945 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/westpa/fasthist/_fasthist.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/westpa/fasthist/_fasthist.cpython-311-arm-linux-gnueabihf.so 2023-09-20T10:04:35,092 building 'westpa.trajtree._trajtree' extension 2023-09-20T10:04:35,092 creating build/temp.linux-armv7l-cpython-311/src/westpa/trajtree 2023-09-20T10:04:35,093 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/westpa/trajtree/_trajtree.c -o build/temp.linux-armv7l-cpython-311/src/westpa/trajtree/_trajtree.o -O3 2023-09-20T10:04:35,469 In file included from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-20T10:04:35,469 from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-20T10:04:35,470 from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-20T10:04:35,470 from src/westpa/trajtree/_trajtree.c:1179: 2023-09-20T10:04:35,471 /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-20T10:04:35,472 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-20T10:04:35,472 | ^~~~~~~ 2023-09-20T10:04:35,619 src/westpa/trajtree/_trajtree.c: In function ‘__pyx_f_6westpa_8trajtree_9_trajtree_14_trajtree_base__build_table’: 2023-09-20T10:04:35,624 src/westpa/trajtree/_trajtree.c:5898:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_5numpy_uint64_t’ {aka ‘long long unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-20T10:04:35,624 5898 | for (__pyx_t_22 = 0; __pyx_t_22 < __pyx_t_27; __pyx_t_22+=1) { 2023-09-20T10:04:35,625 | ^ 2023-09-20T10:04:35,648 src/westpa/trajtree/_trajtree.c: In function ‘__pyx_f_6westpa_8trajtree_9_trajtree_14_trajtree_base_count_roots’: 2023-09-20T10:04:35,654 src/westpa/trajtree/_trajtree.c:6356:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_5numpy_uint64_t’ {aka ‘long long unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-20T10:04:35,654 6356 | for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_8; __pyx_t_6+=1) { 2023-09-20T10:04:35,655 | ^ 2023-09-20T10:04:35,664 src/westpa/trajtree/_trajtree.c: In function ‘__pyx_f_6westpa_8trajtree_9_trajtree_14_trajtree_base_count_leaves’: 2023-09-20T10:04:35,670 src/westpa/trajtree/_trajtree.c:6656:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_5numpy_uint64_t’ {aka ‘long long unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-20T10:04:35,671 6656 | for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_8; __pyx_t_6+=1) { 2023-09-20T10:04:35,671 | ^ 2023-09-20T10:04:51,980 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/westpa/trajtree/_trajtree.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/westpa/trajtree/_trajtree.cpython-311-arm-linux-gnueabihf.so 2023-09-20T10:04:52,106 building 'westpa.mclib._mclib' extension 2023-09-20T10:04:52,106 creating build/temp.linux-armv7l-cpython-311/src/westpa/mclib 2023-09-20T10:04:52,107 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/westpa/mclib/_mclib.c -o build/temp.linux-armv7l-cpython-311/src/westpa/mclib/_mclib.o -O3 2023-09-20T10:04:52,493 In file included from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-20T10:04:52,494 from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-20T10:04:52,494 from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-20T10:04:52,495 from src/westpa/mclib/_mclib.c:1179: 2023-09-20T10:04:52,496 /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-20T10:04:52,496 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-20T10:04:52,497 | ^~~~~~~ 2023-09-20T10:05:29,985 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/westpa/mclib/_mclib.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/westpa/mclib/_mclib.cpython-311-arm-linux-gnueabihf.so 2023-09-20T10:05:30,128 building 'westpa.core.binning._assign' extension 2023-09-20T10:05:30,128 creating build/temp.linux-armv7l-cpython-311/src/westpa/core 2023-09-20T10:05:30,129 creating build/temp.linux-armv7l-cpython-311/src/westpa/core/binning 2023-09-20T10:05:30,130 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/westpa/core/binning/_assign.c -o build/temp.linux-armv7l-cpython-311/src/westpa/core/binning/_assign.o -O3 2023-09-20T10:05:30,518 In file included from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-20T10:05:30,519 from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-20T10:05:30,519 from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-20T10:05:30,520 from src/westpa/core/binning/_assign.c:1179: 2023-09-20T10:05:30,520 /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-20T10:05:30,521 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-20T10:05:30,521 | ^~~~~~~ 2023-09-20T10:06:01,350 In function ‘__pyx_f_6westpa_4core_7binning_7_assign_rectilinear_assign’, 2023-09-20T10:06:01,351 inlined from ‘__pyx_pf_6westpa_4core_7binning_7_assign_rectilinear_assign’ at src/westpa/core/binning/_assign.c:20445:15, 2023-09-20T10:06:01,351 inlined from ‘__pyx_pw_6westpa_4core_7binning_7_assign_1rectilinear_assign’ at src/westpa/core/binning/_assign.c:20402:13: 2023-09-20T10:06:01,369 src/westpa/core/binning/_assign.c:20173:165: warning: ‘__pyx_v_index’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-20T10:06:01,370 20173 | *((__pyx_t_6westpa_4core_7binning_7_assign_index_t *) ( /* dim=0 */ (__pyx_v_output.data + __pyx_t_15 * __pyx_v_output.strides[0]) )) += (__pyx_v_index * __pyx_v_stridefac); 2023-09-20T10:06:01,371 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2023-09-20T10:06:01,371 src/westpa/core/binning/_assign.c: In function ‘__pyx_pw_6westpa_4core_7binning_7_assign_1rectilinear_assign’: 2023-09-20T10:06:01,388 src/westpa/core/binning/_assign.c:19693:51: note: ‘__pyx_v_index’ was declared here 2023-09-20T10:06:01,388 19693 | __pyx_t_6westpa_4core_7binning_7_assign_index_t __pyx_v_index; 2023-09-20T10:06:01,389 | ^~~~~~~~~~~~~ 2023-09-20T10:06:09,814 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/westpa/core/binning/_assign.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/westpa/core/binning/_assign.cpython-311-arm-linux-gnueabihf.so 2023-09-20T10:06:09,960 building 'westpa.core.kinetics._kinetics' extension 2023-09-20T10:06:09,961 creating build/temp.linux-armv7l-cpython-311/src/westpa/core/kinetics 2023-09-20T10:06:09,961 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/westpa/core/kinetics/_kinetics.c -o build/temp.linux-armv7l-cpython-311/src/westpa/core/kinetics/_kinetics.o -O3 2023-09-20T10:06:10,347 In file included from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-20T10:06:10,348 from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-20T10:06:10,349 from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-20T10:06:10,349 from src/westpa/core/kinetics/_kinetics.c:1179: 2023-09-20T10:06:10,350 /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-20T10:06:10,350 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-20T10:06:10,350 | ^~~~~~~ 2023-09-20T10:06:59,376 src/westpa/core/kinetics/_kinetics.c: In function ‘__pyx_pw_6westpa_4core_8kinetics_9_kinetics_23sequence_macro_flux_to_rate’: 2023-09-20T10:06:59,378 src/westpa/core/kinetics/_kinetics.c:2443:79: warning: ‘__pyx_v_iiter’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-20T10:06:59,379 2443 | __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\ 2023-09-20T10:06:59,379 | ^~ 2023-09-20T10:06:59,380 2444 | (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\ 2023-09-20T10:06:59,381 | 2023-09-20T10:06:59,404 src/westpa/core/kinetics/_kinetics.c:25373:14: note: ‘__pyx_v_iiter’ was declared here 2023-09-20T10:06:59,404 25373 | Py_ssize_t __pyx_v_iiter; 2023-09-20T10:06:59,405 | ^~~~~~~~~~~~~ 2023-09-20T10:07:02,146 In function ‘__pyx_f_6westpa_4core_8kinetics_9_kinetics_find_macrostate_transitions’, 2023-09-20T10:07:02,147 inlined from ‘__pyx_pf_6westpa_4core_8kinetics_9_kinetics_26find_macrostate_transitions’ at src/westpa/core/kinetics/_kinetics.c:28099:15, 2023-09-20T10:07:02,147 inlined from ‘__pyx_pw_6westpa_4core_8kinetics_9_kinetics_27find_macrostate_transitions’ at src/westpa/core/kinetics/_kinetics.c:28063:13: 2023-09-20T10:07:02,172 src/westpa/core/kinetics/_kinetics.c:27786:105: warning: ‘__pyx_v_tm’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-20T10:07:02,172 27786 | *((double *) ( /* dim=0 */ (__pyx_v__last_time.data + __pyx_t_8 * __pyx_v__last_time.strides[0]) )) = __pyx_v_tm; 2023-09-20T10:07:02,173 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T10:07:02,174 src/westpa/core/kinetics/_kinetics.c: In function ‘__pyx_pw_6westpa_4core_8kinetics_9_kinetics_27find_macrostate_transitions’: 2023-09-20T10:07:02,199 src/westpa/core/kinetics/_kinetics.c:27314:10: note: ‘__pyx_v_tm’ was declared here 2023-09-20T10:07:02,200 27314 | double __pyx_v_tm; 2023-09-20T10:07:02,201 | ^~~~~~~~~~ 2023-09-20T10:07:06,145 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/westpa/core/kinetics/_kinetics.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/westpa/core/kinetics/_kinetics.cpython-311-arm-linux-gnueabihf.so 2023-09-20T10:07:06,321 building 'westpa.core.reweight._reweight' extension 2023-09-20T10:07:06,321 creating build/temp.linux-armv7l-cpython-311/src/westpa/core/reweight 2023-09-20T10:07:06,322 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/westpa/core/reweight/_reweight.c -o build/temp.linux-armv7l-cpython-311/src/westpa/core/reweight/_reweight.o -O3 2023-09-20T10:07:06,706 In file included from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-20T10:07:06,706 from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-20T10:07:06,707 from /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-20T10:07:06,707 from src/westpa/core/reweight/_reweight.c:1179: 2023-09-20T10:07:06,708 /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-20T10:07:06,708 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-20T10:07:06,709 | ^~~~~~~ 2023-09-20T10:07:52,559 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/westpa/core/reweight/_reweight.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/westpa/core/reweight/_reweight.cpython-311-arm-linux-gnueabihf.so 2023-09-20T10:07:52,727 UPDATING build/lib.linux-armv7l-cpython-311/westpa/_version.py 2023-09-20T10:07:52,728 set build/lib.linux-armv7l-cpython-311/westpa/_version.py to '2022.03' 2023-09-20T10:07:52,728 installing to build/bdist.linux-armv7l/wheel 2023-09-20T10:07:52,729 running install 2023-09-20T10:07:52,752 running install_lib 2023-09-20T10:07:52,760 creating build/bdist.linux-armv7l 2023-09-20T10:07:52,761 creating build/bdist.linux-armv7l/wheel 2023-09-20T10:07:52,763 creating build/bdist.linux-armv7l/wheel/westpa 2023-09-20T10:07:52,764 creating build/bdist.linux-armv7l/wheel/westpa/westext 2023-09-20T10:07:52,765 creating build/bdist.linux-armv7l/wheel/westpa/westext/hamsm_restarting 2023-09-20T10:07:52,766 copying build/lib.linux-armv7l-cpython-311/westpa/westext/hamsm_restarting/example_overrides.py -> build/bdist.linux-armv7l/wheel/westpa/westext/hamsm_restarting 2023-09-20T10:07:52,768 copying build/lib.linux-armv7l-cpython-311/westpa/westext/hamsm_restarting/restart_driver.py -> build/bdist.linux-armv7l/wheel/westpa/westext/hamsm_restarting 2023-09-20T10:07:52,772 copying build/lib.linux-armv7l-cpython-311/westpa/westext/hamsm_restarting/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/westext/hamsm_restarting 2023-09-20T10:07:52,773 copying build/lib.linux-armv7l-cpython-311/westpa/westext/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/westext 2023-09-20T10:07:52,775 creating build/bdist.linux-armv7l/wheel/westpa/westext/weed 2023-09-20T10:07:52,776 copying build/lib.linux-armv7l-cpython-311/westpa/westext/weed/ProbAdjustEquil.py -> build/bdist.linux-armv7l/wheel/westpa/westext/weed 2023-09-20T10:07:52,778 copying build/lib.linux-armv7l-cpython-311/westpa/westext/weed/UncertMath.py -> build/bdist.linux-armv7l/wheel/westpa/westext/weed 2023-09-20T10:07:52,780 copying build/lib.linux-armv7l-cpython-311/westpa/westext/weed/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/westext/weed 2023-09-20T10:07:52,782 copying build/lib.linux-armv7l-cpython-311/westpa/westext/weed/weed_driver.py -> build/bdist.linux-armv7l/wheel/westpa/westext/weed 2023-09-20T10:07:52,785 copying build/lib.linux-armv7l-cpython-311/westpa/westext/weed/BinCluster.py -> build/bdist.linux-armv7l/wheel/westpa/westext/weed 2023-09-20T10:07:52,787 creating build/bdist.linux-armv7l/wheel/westpa/westext/wess 2023-09-20T10:07:52,788 copying build/lib.linux-armv7l-cpython-311/westpa/westext/wess/ProbAdjust.py -> build/bdist.linux-armv7l/wheel/westpa/westext/wess 2023-09-20T10:07:52,791 copying build/lib.linux-armv7l-cpython-311/westpa/westext/wess/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/westext/wess 2023-09-20T10:07:52,792 copying build/lib.linux-armv7l-cpython-311/westpa/westext/wess/wess_driver.py -> build/bdist.linux-armv7l/wheel/westpa/westext/wess 2023-09-20T10:07:52,795 creating build/bdist.linux-armv7l/wheel/westpa/westext/adaptvoronoi 2023-09-20T10:07:52,796 copying build/lib.linux-armv7l-cpython-311/westpa/westext/adaptvoronoi/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/westext/adaptvoronoi 2023-09-20T10:07:52,798 copying build/lib.linux-armv7l-cpython-311/westpa/westext/adaptvoronoi/adaptVor_driver.py -> build/bdist.linux-armv7l/wheel/westpa/westext/adaptvoronoi 2023-09-20T10:07:52,800 creating build/bdist.linux-armv7l/wheel/westpa/westext/stringmethod 2023-09-20T10:07:52,801 copying build/lib.linux-armv7l-cpython-311/westpa/westext/stringmethod/string_method.py -> build/bdist.linux-armv7l/wheel/westpa/westext/stringmethod 2023-09-20T10:07:52,803 copying build/lib.linux-armv7l-cpython-311/westpa/westext/stringmethod/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/westext/stringmethod 2023-09-20T10:07:52,805 copying build/lib.linux-armv7l-cpython-311/westpa/westext/stringmethod/string_driver.py -> build/bdist.linux-armv7l/wheel/westpa/westext/stringmethod 2023-09-20T10:07:52,807 copying build/lib.linux-armv7l-cpython-311/westpa/westext/stringmethod/fourier_fitting.py -> build/bdist.linux-armv7l/wheel/westpa/westext/stringmethod 2023-09-20T10:07:52,809 creating build/bdist.linux-armv7l/wheel/westpa/cli 2023-09-20T10:07:52,811 creating build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,812 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_trace.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,814 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_postanalysis_matrix.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,816 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_postanalysis_reweight.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,818 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_reweight.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,821 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_select.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,823 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_ntop.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,826 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/plothist.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,828 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,830 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_crawl.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,832 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_assign.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,835 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_direct.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,837 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/ploterr.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,840 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_kinavg.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,842 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_bins.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,844 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_kinetics.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,846 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_fluxanl.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,848 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_dumpsegs.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,850 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_ipa.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,853 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_red.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,858 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_stateprobs.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,859 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_pdist.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,862 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_multi_west.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,864 copying build/lib.linux-armv7l-cpython-311/westpa/cli/tools/w_eddist.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2023-09-20T10:07:52,867 copying build/lib.linux-armv7l-cpython-311/westpa/cli/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/cli 2023-09-20T10:07:52,869 creating build/bdist.linux-armv7l/wheel/westpa/cli/core 2023-09-20T10:07:52,869 copying build/lib.linux-armv7l-cpython-311/westpa/cli/core/w_succ.py -> build/bdist.linux-armv7l/wheel/westpa/cli/core 2023-09-20T10:07:52,872 copying build/lib.linux-armv7l-cpython-311/westpa/cli/core/w_states.py -> build/bdist.linux-armv7l/wheel/westpa/cli/core 2023-09-20T10:07:52,874 copying build/lib.linux-armv7l-cpython-311/westpa/cli/core/w_init.py -> build/bdist.linux-armv7l/wheel/westpa/cli/core 2023-09-20T10:07:52,876 copying build/lib.linux-armv7l-cpython-311/westpa/cli/core/w_truncate.py -> build/bdist.linux-armv7l/wheel/westpa/cli/core 2023-09-20T10:07:52,878 copying build/lib.linux-armv7l-cpython-311/westpa/cli/core/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/cli/core 2023-09-20T10:07:52,879 copying build/lib.linux-armv7l-cpython-311/westpa/cli/core/w_fork.py -> build/bdist.linux-armv7l/wheel/westpa/cli/core 2023-09-20T10:07:52,881 copying build/lib.linux-armv7l-cpython-311/westpa/cli/core/w_run.py -> build/bdist.linux-armv7l/wheel/westpa/cli/core 2023-09-20T10:07:52,884 creating build/bdist.linux-armv7l/wheel/westpa/tools 2023-09-20T10:07:52,885 copying build/lib.linux-armv7l-cpython-311/westpa/tools/kinetics_tool.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2023-09-20T10:07:52,887 copying build/lib.linux-armv7l-cpython-311/westpa/tools/progress.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2023-09-20T10:07:52,889 copying build/lib.linux-armv7l-cpython-311/westpa/tools/binning.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2023-09-20T10:07:52,892 copying build/lib.linux-armv7l-cpython-311/westpa/tools/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2023-09-20T10:07:52,893 copying build/lib.linux-armv7l-cpython-311/westpa/tools/data_reader.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2023-09-20T10:07:52,896 copying build/lib.linux-armv7l-cpython-311/westpa/tools/wipi.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2023-09-20T10:07:52,898 copying build/lib.linux-armv7l-cpython-311/westpa/tools/selected_segs.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2023-09-20T10:07:52,901 copying build/lib.linux-armv7l-cpython-311/westpa/tools/dtypes.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2023-09-20T10:07:52,902 copying build/lib.linux-armv7l-cpython-311/westpa/tools/iter_range.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2023-09-20T10:07:52,905 copying build/lib.linux-armv7l-cpython-311/westpa/tools/plot.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2023-09-20T10:07:52,907 copying build/lib.linux-armv7l-cpython-311/westpa/tools/core.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2023-09-20T10:07:52,910 creating build/bdist.linux-armv7l/wheel/westpa/oldtools 2023-09-20T10:07:52,911 creating build/bdist.linux-armv7l/wheel/westpa/oldtools/stats 2023-09-20T10:07:52,912 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/stats/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/stats 2023-09-20T10:07:52,914 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/stats/mcbs.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/stats 2023-09-20T10:07:52,916 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/stats/edfs.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/stats 2023-09-20T10:07:52,917 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/stats/accumulator.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/stats 2023-09-20T10:07:52,919 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools 2023-09-20T10:07:52,921 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/files.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools 2023-09-20T10:07:52,923 creating build/bdist.linux-armv7l/wheel/westpa/oldtools/cmds 2023-09-20T10:07:52,924 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/cmds/w_ttimes.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/cmds 2023-09-20T10:07:52,926 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/cmds/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/cmds 2023-09-20T10:07:52,928 creating build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2023-09-20T10:07:52,929 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe/plotting.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2023-09-20T10:07:52,931 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe/base_mixin.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2023-09-20T10:07:52,932 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe/output.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2023-09-20T10:07:52,934 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe/trajwalker.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2023-09-20T10:07:52,936 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe/binning.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2023-09-20T10:07:52,939 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe/transitions.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2023-09-20T10:07:52,941 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2023-09-20T10:07:52,943 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe/mcbs.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2023-09-20T10:07:52,945 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe/data_reader.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2023-09-20T10:07:52,948 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe/kinetics.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2023-09-20T10:07:52,950 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe/atool.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2023-09-20T10:07:52,952 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/aframe/iter_range.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2023-09-20T10:07:52,954 copying build/lib.linux-armv7l-cpython-311/westpa/oldtools/miscfn.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools 2023-09-20T10:07:52,956 copying build/lib.linux-armv7l-cpython-311/westpa/__init__.py -> build/bdist.linux-armv7l/wheel/westpa 2023-09-20T10:07:52,958 creating build/bdist.linux-armv7l/wheel/westpa/analysis 2023-09-20T10:07:52,959 copying build/lib.linux-armv7l-cpython-311/westpa/analysis/trajectories.py -> build/bdist.linux-armv7l/wheel/westpa/analysis 2023-09-20T10:07:52,961 copying build/lib.linux-armv7l-cpython-311/westpa/analysis/statistics.py -> build/bdist.linux-armv7l/wheel/westpa/analysis 2023-09-20T10:07:52,963 copying build/lib.linux-armv7l-cpython-311/westpa/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/analysis 2023-09-20T10:07:52,965 copying build/lib.linux-armv7l-cpython-311/westpa/analysis/core.py -> build/bdist.linux-armv7l/wheel/westpa/analysis 2023-09-20T10:07:52,968 creating build/bdist.linux-armv7l/wheel/westpa/core 2023-09-20T10:07:52,969 copying build/lib.linux-armv7l-cpython-311/westpa/core/yamlcfg.py -> build/bdist.linux-armv7l/wheel/westpa/core 2023-09-20T10:07:52,971 creating build/bdist.linux-armv7l/wheel/westpa/core/binning 2023-09-20T10:07:52,972 copying build/lib.linux-armv7l-cpython-311/westpa/core/binning/_assign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2023-09-20T10:07:53,000 copying build/lib.linux-armv7l-cpython-311/westpa/core/binning/mab_driver.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2023-09-20T10:07:53,001 copying build/lib.linux-armv7l-cpython-311/westpa/core/binning/binless.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2023-09-20T10:07:53,003 copying build/lib.linux-armv7l-cpython-311/westpa/core/binning/binless_driver.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2023-09-20T10:07:53,005 copying build/lib.linux-armv7l-cpython-311/westpa/core/binning/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2023-09-20T10:07:53,007 copying build/lib.linux-armv7l-cpython-311/westpa/core/binning/mab_manager.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2023-09-20T10:07:53,009 copying build/lib.linux-armv7l-cpython-311/westpa/core/binning/mab.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2023-09-20T10:07:53,011 copying build/lib.linux-armv7l-cpython-311/westpa/core/binning/bins.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2023-09-20T10:07:53,012 copying build/lib.linux-armv7l-cpython-311/westpa/core/binning/binless_manager.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2023-09-20T10:07:53,015 copying build/lib.linux-armv7l-cpython-311/westpa/core/binning/assign.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2023-09-20T10:07:53,017 creating build/bdist.linux-armv7l/wheel/westpa/core/propagators 2023-09-20T10:07:53,018 copying build/lib.linux-armv7l-cpython-311/westpa/core/propagators/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/core/propagators 2023-09-20T10:07:53,020 copying build/lib.linux-armv7l-cpython-311/westpa/core/propagators/executable.py -> build/bdist.linux-armv7l/wheel/westpa/core/propagators 2023-09-20T10:07:53,023 copying build/lib.linux-armv7l-cpython-311/westpa/core/progress.py -> build/bdist.linux-armv7l/wheel/westpa/core 2023-09-20T10:07:53,026 copying build/lib.linux-armv7l-cpython-311/westpa/core/h5io.py -> build/bdist.linux-armv7l/wheel/westpa/core 2023-09-20T10:07:53,028 copying build/lib.linux-armv7l-cpython-311/westpa/core/data_manager.py -> build/bdist.linux-armv7l/wheel/westpa/core 2023-09-20T10:07:53,032 creating build/bdist.linux-armv7l/wheel/westpa/core/reweight 2023-09-20T10:07:53,033 copying build/lib.linux-armv7l-cpython-311/westpa/core/reweight/matrix.py -> build/bdist.linux-armv7l/wheel/westpa/core/reweight 2023-09-20T10:07:53,035 copying build/lib.linux-armv7l-cpython-311/westpa/core/reweight/_reweight.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/westpa/core/reweight 2023-09-20T10:07:53,059 copying build/lib.linux-armv7l-cpython-311/westpa/core/reweight/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/core/reweight 2023-09-20T10:07:53,061 copying build/lib.linux-armv7l-cpython-311/westpa/core/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/core 2023-09-20T10:07:53,062 copying build/lib.linux-armv7l-cpython-311/westpa/core/extloader.py -> build/bdist.linux-armv7l/wheel/westpa/core 2023-09-20T10:07:53,064 copying build/lib.linux-armv7l-cpython-311/westpa/core/_rc.py -> build/bdist.linux-armv7l/wheel/westpa/core 2023-09-20T10:07:53,067 copying build/lib.linux-armv7l-cpython-311/westpa/core/we_driver.py -> build/bdist.linux-armv7l/wheel/westpa/core 2023-09-20T10:07:53,069 copying build/lib.linux-armv7l-cpython-311/westpa/core/states.py -> build/bdist.linux-armv7l/wheel/westpa/core 2023-09-20T10:07:53,072 copying build/lib.linux-armv7l-cpython-311/westpa/core/trajectory.py -> build/bdist.linux-armv7l/wheel/westpa/core 2023-09-20T10:07:53,074 copying build/lib.linux-armv7l-cpython-311/westpa/core/wm_ops.py -> build/bdist.linux-armv7l/wheel/westpa/core 2023-09-20T10:07:53,076 copying build/lib.linux-armv7l-cpython-311/westpa/core/systems.py -> build/bdist.linux-armv7l/wheel/westpa/core 2023-09-20T10:07:53,078 creating build/bdist.linux-armv7l/wheel/westpa/core/kinetics 2023-09-20T10:07:53,079 copying build/lib.linux-armv7l-cpython-311/westpa/core/kinetics/events.py -> build/bdist.linux-armv7l/wheel/westpa/core/kinetics 2023-09-20T10:07:53,081 copying build/lib.linux-armv7l-cpython-311/westpa/core/kinetics/matrates.py -> build/bdist.linux-armv7l/wheel/westpa/core/kinetics 2023-09-20T10:07:53,083 copying build/lib.linux-armv7l-cpython-311/westpa/core/kinetics/rate_averaging.py -> build/bdist.linux-armv7l/wheel/westpa/core/kinetics 2023-09-20T10:07:53,085 copying build/lib.linux-armv7l-cpython-311/westpa/core/kinetics/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/core/kinetics 2023-09-20T10:07:53,087 copying build/lib.linux-armv7l-cpython-311/westpa/core/kinetics/_kinetics.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/westpa/core/kinetics 2023-09-20T10:07:53,119 copying build/lib.linux-armv7l-cpython-311/westpa/core/textio.py -> build/bdist.linux-armv7l/wheel/westpa/core 2023-09-20T10:07:53,121 copying build/lib.linux-armv7l-cpython-311/westpa/core/sim_manager.py -> build/bdist.linux-armv7l/wheel/westpa/core 2023-09-20T10:07:53,124 copying build/lib.linux-armv7l-cpython-311/westpa/core/segment.py -> build/bdist.linux-armv7l/wheel/westpa/core 2023-09-20T10:07:53,127 creating build/bdist.linux-armv7l/wheel/westpa/fasthist 2023-09-20T10:07:53,128 copying build/lib.linux-armv7l-cpython-311/westpa/fasthist/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/fasthist 2023-09-20T10:07:53,130 copying build/lib.linux-armv7l-cpython-311/westpa/fasthist/_fasthist.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/westpa/fasthist 2023-09-20T10:07:53,152 copying build/lib.linux-armv7l-cpython-311/westpa/fasthist/__main__.py -> build/bdist.linux-armv7l/wheel/westpa/fasthist 2023-09-20T10:07:53,155 creating build/bdist.linux-armv7l/wheel/westpa/mclib 2023-09-20T10:07:53,156 copying build/lib.linux-armv7l-cpython-311/westpa/mclib/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/mclib 2023-09-20T10:07:53,159 copying build/lib.linux-armv7l-cpython-311/westpa/mclib/_mclib.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/westpa/mclib 2023-09-20T10:07:53,183 copying build/lib.linux-armv7l-cpython-311/westpa/mclib/__main__.py -> build/bdist.linux-armv7l/wheel/westpa/mclib 2023-09-20T10:07:53,185 copying build/lib.linux-armv7l-cpython-311/westpa/_version.py -> build/bdist.linux-armv7l/wheel/westpa 2023-09-20T10:07:53,187 creating build/bdist.linux-armv7l/wheel/westpa/work_managers 2023-09-20T10:07:53,189 copying build/lib.linux-armv7l-cpython-311/westpa/work_managers/threads.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers 2023-09-20T10:07:53,191 copying build/lib.linux-armv7l-cpython-311/westpa/work_managers/mpi.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers 2023-09-20T10:07:53,194 creating build/bdist.linux-armv7l/wheel/westpa/work_managers/zeromq 2023-09-20T10:07:53,195 copying build/lib.linux-armv7l-cpython-311/westpa/work_managers/zeromq/worker.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers/zeromq 2023-09-20T10:07:53,198 copying build/lib.linux-armv7l-cpython-311/westpa/work_managers/zeromq/work_manager.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers/zeromq 2023-09-20T10:07:53,201 copying build/lib.linux-armv7l-cpython-311/westpa/work_managers/zeromq/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers/zeromq 2023-09-20T10:07:53,202 copying build/lib.linux-armv7l-cpython-311/westpa/work_managers/zeromq/node.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers/zeromq 2023-09-20T10:07:53,205 copying build/lib.linux-armv7l-cpython-311/westpa/work_managers/zeromq/core.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers/zeromq 2023-09-20T10:07:53,208 copying build/lib.linux-armv7l-cpython-311/westpa/work_managers/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers 2023-09-20T10:07:53,210 copying build/lib.linux-armv7l-cpython-311/westpa/work_managers/serial.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers 2023-09-20T10:07:53,212 copying build/lib.linux-armv7l-cpython-311/westpa/work_managers/processes.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers 2023-09-20T10:07:53,214 copying build/lib.linux-armv7l-cpython-311/westpa/work_managers/environment.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers 2023-09-20T10:07:53,216 copying build/lib.linux-armv7l-cpython-311/westpa/work_managers/core.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers 2023-09-20T10:07:53,219 creating build/bdist.linux-armv7l/wheel/westpa/trajtree 2023-09-20T10:07:53,221 copying build/lib.linux-armv7l-cpython-311/westpa/trajtree/trajtree.py -> build/bdist.linux-armv7l/wheel/westpa/trajtree 2023-09-20T10:07:53,223 copying build/lib.linux-armv7l-cpython-311/westpa/trajtree/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/trajtree 2023-09-20T10:07:53,225 copying build/lib.linux-armv7l-cpython-311/westpa/trajtree/_trajtree.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/westpa/trajtree 2023-09-20T10:07:53,241 running install_egg_info 2023-09-20T10:07:53,254 running egg_info 2023-09-20T10:07:53,260 writing src/westpa.egg-info/PKG-INFO 2023-09-20T10:07:53,266 writing dependency_links to src/westpa.egg-info/dependency_links.txt 2023-09-20T10:07:53,269 writing entry points to src/westpa.egg-info/entry_points.txt 2023-09-20T10:07:53,272 writing requirements to src/westpa.egg-info/requires.txt 2023-09-20T10:07:53,273 writing top-level names to src/westpa.egg-info/top_level.txt 2023-09-20T10:07:53,305 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,306 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,307 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,307 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,308 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,309 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,309 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,310 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,310 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,311 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,312 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,312 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,313 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,313 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,314 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,314 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,314 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,315 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,316 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,316 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,317 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,317 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,318 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,318 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,319 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,319 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,320 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,320 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,321 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,322 dependency /tmp/pip-build-env-j52h4v03/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-20T10:07:53,326 reading manifest file 'src/westpa.egg-info/SOURCES.txt' 2023-09-20T10:07:53,333 reading manifest template 'MANIFEST.in' 2023-09-20T10:07:53,397 adding license file 'LICENSE' 2023-09-20T10:07:53,397 adding license file 'AUTHORS' 2023-09-20T10:07:53,405 writing manifest file 'src/westpa.egg-info/SOURCES.txt' 2023-09-20T10:07:53,411 Copying src/westpa.egg-info to build/bdist.linux-armv7l/wheel/westpa-2022.3-py3.11.egg-info 2023-09-20T10:07:53,424 running install_scripts 2023-09-20T10:07:53,480 creating build/bdist.linux-armv7l/wheel/westpa-2022.3.dist-info/WHEEL 2023-09-20T10:07:53,483 creating '/tmp/pip-wheel-i8ss5mc6/.tmp-7jyat9k0/westpa-2022.3-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-20T10:07:53,485 adding 'westpa/__init__.py' 2023-09-20T10:07:53,487 adding 'westpa/_version.py' 2023-09-20T10:07:53,489 adding 'westpa/analysis/__init__.py' 2023-09-20T10:07:53,492 adding 'westpa/analysis/core.py' 2023-09-20T10:07:53,494 adding 'westpa/analysis/statistics.py' 2023-09-20T10:07:53,496 adding 'westpa/analysis/trajectories.py' 2023-09-20T10:07:53,498 adding 'westpa/cli/__init__.py' 2023-09-20T10:07:53,500 adding 'westpa/cli/core/__init__.py' 2023-09-20T10:07:53,502 adding 'westpa/cli/core/w_fork.py' 2023-09-20T10:07:53,504 adding 'westpa/cli/core/w_init.py' 2023-09-20T10:07:53,506 adding 'westpa/cli/core/w_run.py' 2023-09-20T10:07:53,508 adding 'westpa/cli/core/w_states.py' 2023-09-20T10:07:53,510 adding 'westpa/cli/core/w_succ.py' 2023-09-20T10:07:53,512 adding 'westpa/cli/core/w_truncate.py' 2023-09-20T10:07:53,513 adding 'westpa/cli/tools/__init__.py' 2023-09-20T10:07:53,516 adding 'westpa/cli/tools/ploterr.py' 2023-09-20T10:07:53,520 adding 'westpa/cli/tools/plothist.py' 2023-09-20T10:07:53,523 adding 'westpa/cli/tools/w_assign.py' 2023-09-20T10:07:53,526 adding 'westpa/cli/tools/w_bins.py' 2023-09-20T10:07:53,528 adding 'westpa/cli/tools/w_crawl.py' 2023-09-20T10:07:53,531 adding 'westpa/cli/tools/w_direct.py' 2023-09-20T10:07:53,533 adding 'westpa/cli/tools/w_dumpsegs.py' 2023-09-20T10:07:53,536 adding 'westpa/cli/tools/w_eddist.py' 2023-09-20T10:07:53,538 adding 'westpa/cli/tools/w_fluxanl.py' 2023-09-20T10:07:53,543 adding 'westpa/cli/tools/w_ipa.py' 2023-09-20T10:07:53,545 adding 'westpa/cli/tools/w_kinavg.py' 2023-09-20T10:07:53,547 adding 'westpa/cli/tools/w_kinetics.py' 2023-09-20T10:07:53,550 adding 'westpa/cli/tools/w_multi_west.py' 2023-09-20T10:07:53,552 adding 'westpa/cli/tools/w_ntop.py' 2023-09-20T10:07:53,555 adding 'westpa/cli/tools/w_pdist.py' 2023-09-20T10:07:53,557 adding 'westpa/cli/tools/w_postanalysis_matrix.py' 2023-09-20T10:07:53,559 adding 'westpa/cli/tools/w_postanalysis_reweight.py' 2023-09-20T10:07:53,562 adding 'westpa/cli/tools/w_red.py' 2023-09-20T10:07:53,566 adding 'westpa/cli/tools/w_reweight.py' 2023-09-20T10:07:53,568 adding 'westpa/cli/tools/w_select.py' 2023-09-20T10:07:53,570 adding 'westpa/cli/tools/w_stateprobs.py' 2023-09-20T10:07:53,574 adding 'westpa/cli/tools/w_trace.py' 2023-09-20T10:07:53,576 adding 'westpa/core/__init__.py' 2023-09-20T10:07:53,579 adding 'westpa/core/_rc.py' 2023-09-20T10:07:53,588 adding 'westpa/core/data_manager.py' 2023-09-20T10:07:53,590 adding 'westpa/core/extloader.py' 2023-09-20T10:07:53,595 adding 'westpa/core/h5io.py' 2023-09-20T10:07:53,597 adding 'westpa/core/progress.py' 2023-09-20T10:07:53,599 adding 'westpa/core/segment.py' 2023-09-20T10:07:53,604 adding 'westpa/core/sim_manager.py' 2023-09-20T10:07:53,607 adding 'westpa/core/states.py' 2023-09-20T10:07:53,608 adding 'westpa/core/systems.py' 2023-09-20T10:07:53,610 adding 'westpa/core/textio.py' 2023-09-20T10:07:53,612 adding 'westpa/core/trajectory.py' 2023-09-20T10:07:53,618 adding 'westpa/core/we_driver.py' 2023-09-20T10:07:53,620 adding 'westpa/core/wm_ops.py' 2023-09-20T10:07:53,622 adding 'westpa/core/yamlcfg.py' 2023-09-20T10:07:53,624 adding 'westpa/core/binning/__init__.py' 2023-09-20T10:07:53,917 adding 'westpa/core/binning/_assign.cpython-311-arm-linux-gnueabihf.so' 2023-09-20T10:07:53,931 adding 'westpa/core/binning/assign.py' 2023-09-20T10:07:53,933 adding 'westpa/core/binning/binless.py' 2023-09-20T10:07:53,935 adding 'westpa/core/binning/binless_driver.py' 2023-09-20T10:07:53,937 adding 'westpa/core/binning/binless_manager.py' 2023-09-20T10:07:53,938 adding 'westpa/core/binning/bins.py' 2023-09-20T10:07:53,940 adding 'westpa/core/binning/mab.py' 2023-09-20T10:07:53,942 adding 'westpa/core/binning/mab_driver.py' 2023-09-20T10:07:53,944 adding 'westpa/core/binning/mab_manager.py' 2023-09-20T10:07:53,946 adding 'westpa/core/kinetics/__init__.py' 2023-09-20T10:07:54,339 adding 'westpa/core/kinetics/_kinetics.cpython-311-arm-linux-gnueabihf.so' 2023-09-20T10:07:54,357 adding 'westpa/core/kinetics/events.py' 2023-09-20T10:07:54,359 adding 'westpa/core/kinetics/matrates.py' 2023-09-20T10:07:54,361 adding 'westpa/core/kinetics/rate_averaging.py' 2023-09-20T10:07:54,363 adding 'westpa/core/propagators/__init__.py' 2023-09-20T10:07:54,366 adding 'westpa/core/propagators/executable.py' 2023-09-20T10:07:54,368 adding 'westpa/core/reweight/__init__.py' 2023-09-20T10:07:54,665 adding 'westpa/core/reweight/_reweight.cpython-311-arm-linux-gnueabihf.so' 2023-09-20T10:07:54,679 adding 'westpa/core/reweight/matrix.py' 2023-09-20T10:07:54,681 adding 'westpa/fasthist/__init__.py' 2023-09-20T10:07:54,682 adding 'westpa/fasthist/__main__.py' 2023-09-20T10:07:54,970 adding 'westpa/fasthist/_fasthist.cpython-311-arm-linux-gnueabihf.so' 2023-09-20T10:07:54,984 adding 'westpa/mclib/__init__.py' 2023-09-20T10:07:54,986 adding 'westpa/mclib/__main__.py' 2023-09-20T10:07:55,277 adding 'westpa/mclib/_mclib.cpython-311-arm-linux-gnueabihf.so' 2023-09-20T10:07:55,289 adding 'westpa/oldtools/__init__.py' 2023-09-20T10:07:55,291 adding 'westpa/oldtools/files.py' 2023-09-20T10:07:55,292 adding 'westpa/oldtools/miscfn.py' 2023-09-20T10:07:55,294 adding 'westpa/oldtools/aframe/__init__.py' 2023-09-20T10:07:55,295 adding 'westpa/oldtools/aframe/atool.py' 2023-09-20T10:07:55,297 adding 'westpa/oldtools/aframe/base_mixin.py' 2023-09-20T10:07:55,299 adding 'westpa/oldtools/aframe/binning.py' 2023-09-20T10:07:55,302 adding 'westpa/oldtools/aframe/data_reader.py' 2023-09-20T10:07:55,304 adding 'westpa/oldtools/aframe/iter_range.py' 2023-09-20T10:07:55,305 adding 'westpa/oldtools/aframe/kinetics.py' 2023-09-20T10:07:55,307 adding 'westpa/oldtools/aframe/mcbs.py' 2023-09-20T10:07:55,309 adding 'westpa/oldtools/aframe/output.py' 2023-09-20T10:07:55,310 adding 'westpa/oldtools/aframe/plotting.py' 2023-09-20T10:07:55,312 adding 'westpa/oldtools/aframe/trajwalker.py' 2023-09-20T10:07:55,315 adding 'westpa/oldtools/aframe/transitions.py' 2023-09-20T10:07:55,316 adding 'westpa/oldtools/cmds/__init__.py' 2023-09-20T10:07:55,319 adding 'westpa/oldtools/cmds/w_ttimes.py' 2023-09-20T10:07:55,320 adding 'westpa/oldtools/stats/__init__.py' 2023-09-20T10:07:55,322 adding 'westpa/oldtools/stats/accumulator.py' 2023-09-20T10:07:55,323 adding 'westpa/oldtools/stats/edfs.py' 2023-09-20T10:07:55,325 adding 'westpa/oldtools/stats/mcbs.py' 2023-09-20T10:07:55,327 adding 'westpa/tools/__init__.py' 2023-09-20T10:07:55,330 adding 'westpa/tools/binning.py' 2023-09-20T10:07:55,332 adding 'westpa/tools/core.py' 2023-09-20T10:07:55,334 adding 'westpa/tools/data_reader.py' 2023-09-20T10:07:55,335 adding 'westpa/tools/dtypes.py' 2023-09-20T10:07:55,337 adding 'westpa/tools/iter_range.py' 2023-09-20T10:07:55,339 adding 'westpa/tools/kinetics_tool.py' 2023-09-20T10:07:55,341 adding 'westpa/tools/plot.py' 2023-09-20T10:07:55,342 adding 'westpa/tools/progress.py' 2023-09-20T10:07:55,344 adding 'westpa/tools/selected_segs.py' 2023-09-20T10:07:55,347 adding 'westpa/tools/wipi.py' 2023-09-20T10:07:55,349 adding 'westpa/trajtree/__init__.py' 2023-09-20T10:07:55,488 adding 'westpa/trajtree/_trajtree.cpython-311-arm-linux-gnueabihf.so' 2023-09-20T10:07:55,495 adding 'westpa/trajtree/trajtree.py' 2023-09-20T10:07:55,496 adding 'westpa/westext/__init__.py' 2023-09-20T10:07:55,498 adding 'westpa/westext/adaptvoronoi/__init__.py' 2023-09-20T10:07:55,499 adding 'westpa/westext/adaptvoronoi/adaptVor_driver.py' 2023-09-20T10:07:55,501 adding 'westpa/westext/hamsm_restarting/__init__.py' 2023-09-20T10:07:55,502 adding 'westpa/westext/hamsm_restarting/example_overrides.py' 2023-09-20T10:07:55,508 adding 'westpa/westext/hamsm_restarting/restart_driver.py' 2023-09-20T10:07:55,510 adding 'westpa/westext/stringmethod/__init__.py' 2023-09-20T10:07:55,511 adding 'westpa/westext/stringmethod/fourier_fitting.py' 2023-09-20T10:07:55,513 adding 'westpa/westext/stringmethod/string_driver.py' 2023-09-20T10:07:55,514 adding 'westpa/westext/stringmethod/string_method.py' 2023-09-20T10:07:55,516 adding 'westpa/westext/weed/BinCluster.py' 2023-09-20T10:07:55,518 adding 'westpa/westext/weed/ProbAdjustEquil.py' 2023-09-20T10:07:55,519 adding 'westpa/westext/weed/UncertMath.py' 2023-09-20T10:07:55,521 adding 'westpa/westext/weed/__init__.py' 2023-09-20T10:07:55,522 adding 'westpa/westext/weed/weed_driver.py' 2023-09-20T10:07:55,524 adding 'westpa/westext/wess/ProbAdjust.py' 2023-09-20T10:07:55,525 adding 'westpa/westext/wess/__init__.py' 2023-09-20T10:07:55,527 adding 'westpa/westext/wess/wess_driver.py' 2023-09-20T10:07:55,528 adding 'westpa/work_managers/__init__.py' 2023-09-20T10:07:55,530 adding 'westpa/work_managers/core.py' 2023-09-20T10:07:55,532 adding 'westpa/work_managers/environment.py' 2023-09-20T10:07:55,534 adding 'westpa/work_managers/mpi.py' 2023-09-20T10:07:55,535 adding 'westpa/work_managers/processes.py' 2023-09-20T10:07:55,537 adding 'westpa/work_managers/serial.py' 2023-09-20T10:07:55,538 adding 'westpa/work_managers/threads.py' 2023-09-20T10:07:55,539 adding 'westpa/work_managers/zeromq/__init__.py' 2023-09-20T10:07:55,542 adding 'westpa/work_managers/zeromq/core.py' 2023-09-20T10:07:55,544 adding 'westpa/work_managers/zeromq/node.py' 2023-09-20T10:07:55,546 adding 'westpa/work_managers/zeromq/work_manager.py' 2023-09-20T10:07:55,548 adding 'westpa/work_managers/zeromq/worker.py' 2023-09-20T10:07:55,551 adding 'westpa-2022.3.dist-info/AUTHORS' 2023-09-20T10:07:55,552 adding 'westpa-2022.3.dist-info/LICENSE' 2023-09-20T10:07:55,553 adding 'westpa-2022.3.dist-info/METADATA' 2023-09-20T10:07:55,554 adding 'westpa-2022.3.dist-info/WHEEL' 2023-09-20T10:07:55,555 adding 'westpa-2022.3.dist-info/entry_points.txt' 2023-09-20T10:07:55,556 adding 'westpa-2022.3.dist-info/top_level.txt' 2023-09-20T10:07:55,559 adding 'westpa-2022.3.dist-info/RECORD' 2023-09-20T10:07:55,601 removing build/bdist.linux-armv7l/wheel 2023-09-20T10:07:55,810 Building wheel for westpa (pyproject.toml): finished with status 'done' 2023-09-20T10:07:55,893 Created wheel for westpa: filename=westpa-2022.3-cp311-cp311-linux_armv7l.whl size=3815249 sha256=272241d7a53fe3a05244e6544515f6e7378dc1b002621d4368cee157816ab9a5 2023-09-20T10:07:55,894 Stored in directory: /tmp/pip-ephem-wheel-cache-vnu8siyg/wheels/43/47/eb/c6417fe5241cdee15e92f47db8baa0156c0c9566dd3e50bc29 2023-09-20T10:07:55,911 Successfully built westpa 2023-09-20T10:07:56,014 Removed build tracker: '/tmp/pip-build-tracker-42965ihk'