2023-09-22T21:18:57,596 Created temporary directory: /tmp/pip-build-tracker-vfdznrad 2023-09-22T21:18:57,597 Initialized build tracking at /tmp/pip-build-tracker-vfdznrad 2023-09-22T21:18:57,598 Created build tracker: /tmp/pip-build-tracker-vfdznrad 2023-09-22T21:18:57,598 Entered build tracker: /tmp/pip-build-tracker-vfdznrad 2023-09-22T21:18:57,599 Created temporary directory: /tmp/pip-wheel-rzn_7vee 2023-09-22T21:18:57,602 Created temporary directory: /tmp/pip-ephem-wheel-cache-2cb1dpk1 2023-09-22T21:18:57,624 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-22T21:18:57,628 2 location(s) to search for versions of napari-bacseg: 2023-09-22T21:18:57,628 * https://pypi.org/simple/napari-bacseg/ 2023-09-22T21:18:57,628 * https://www.piwheels.org/simple/napari-bacseg/ 2023-09-22T21:18:57,628 Fetching project page and analyzing links: https://pypi.org/simple/napari-bacseg/ 2023-09-22T21:18:57,629 Getting page https://pypi.org/simple/napari-bacseg/ 2023-09-22T21:18:57,631 Found index url https://pypi.org/simple/ 2023-09-22T21:18:57,847 Fetched page https://pypi.org/simple/napari-bacseg/ as application/vnd.pypi.simple.v1+json 2023-09-22T21:18:57,853 Found link https://files.pythonhosted.org/packages/45/85/fc51f80f1a04202590c5f6710e5ad9c2324fb37d6653685fadd3cddbb67c/napari-bacseg-1.0.0.tar.gz (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9), version: 1.0.0 2023-09-22T21:18:57,854 Skipping link: No binaries permitted for napari-bacseg: https://files.pythonhosted.org/packages/0e/5a/6890fc35b8b307abf558d96a14d6ea8a08c518d1d0097f92cb02c789d01f/napari_bacseg-1.0.0-py3-none-any.whl (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:57,855 Found link https://files.pythonhosted.org/packages/f5/ef/c1e72fb189125312c0de794fc0c0f2bbf0e71139049997577171e1a10ab1/napari-bacseg-1.0.1.tar.gz (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9), version: 1.0.1 2023-09-22T21:18:57,855 Skipping link: No binaries permitted for napari-bacseg: https://files.pythonhosted.org/packages/88/85/92a8f05a2f8a9a06c1fde56d717dd8712b44eb706d8e0cd9f29844576154/napari_bacseg-1.0.1-py3-none-any.whl (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:57,856 Found link https://files.pythonhosted.org/packages/d1/f7/38b7707c512dca0cf60e088408f290a80e822e1de57128b6e7bd3175aa8c/napari-bacseg-1.0.2.tar.gz (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9), version: 1.0.2 2023-09-22T21:18:57,857 Skipping link: No binaries permitted for napari-bacseg: https://files.pythonhosted.org/packages/df/4c/2f8f43aaf75676de5071c7dc4a34e11986728a7962740c71cfb04baefe0d/napari_bacseg-1.0.2-py3-none-any.whl (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:57,858 Found link https://files.pythonhosted.org/packages/99/59/64ef76535888414b6f5dee806bd696ccc8cf0fd6f73154899376a16f1247/napari-bacseg-1.0.4.tar.gz (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9), version: 1.0.4 2023-09-22T21:18:57,859 Skipping link: No binaries permitted for napari-bacseg: https://files.pythonhosted.org/packages/cd/6b/c868a9b13729b2be887daf9674e06e5e6aaf02172721c85f09b17d42d534/napari_bacseg-1.0.4-py3-none-any.whl (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:57,859 Found link https://files.pythonhosted.org/packages/79/5c/e00a146c5636aba3eb65b51315b589f6a32f1a1af2e3976e9052b201e5d0/napari-bacseg-1.0.5.tar.gz (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9), version: 1.0.5 2023-09-22T21:18:57,860 Skipping link: No binaries permitted for napari-bacseg: https://files.pythonhosted.org/packages/e1/d7/3dd27bd96a1bd9968d6234f714f0e4bedc2fe6c403752cf1c613af906e85/napari_bacseg-1.0.5-py3-none-any.whl (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:57,861 Found link https://files.pythonhosted.org/packages/a2/12/ccdc9271461d3f8ff3ddd03039a6617fe5803299349c426a15ad56441efe/napari-bacseg-1.0.6.tar.gz (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9), version: 1.0.6 2023-09-22T21:18:57,862 Skipping link: No binaries permitted for napari-bacseg: https://files.pythonhosted.org/packages/bb/bc/d21f242fe33a8bac5ceea989891cd679da6438f2314eef7396cc0974e5a6/napari_bacseg-1.0.6-py3-none-any.whl (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:57,863 Found link https://files.pythonhosted.org/packages/ee/f3/100b9f77738690adff2eca73479c36744c7587ab461a6ae24d11aa96139f/napari-bacseg-1.0.7.tar.gz (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9), version: 1.0.7 2023-09-22T21:18:57,863 Skipping link: No binaries permitted for napari-bacseg: https://files.pythonhosted.org/packages/1b/28/b605d119eafad92bd3802e885373213a9d89315fc41ddeb9a9b11d050697/napari_bacseg-1.0.7-py3-none-any.whl (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:57,864 Found link https://files.pythonhosted.org/packages/1e/de/a79f5826f760ad0f833b16fe0aa1a69c7a472967eb9ddee24399079f2c34/napari-bacseg-1.0.7.1.tar.gz (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9), version: 1.0.7.1 2023-09-22T21:18:57,865 Skipping link: No binaries permitted for napari-bacseg: https://files.pythonhosted.org/packages/03/ee/33fb80ea653fe6e6809e450d3ffd9412ce40814231018026c0a9d583e570/napari_bacseg-1.0.7.1-py3-none-any.whl (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:57,865 Found link https://files.pythonhosted.org/packages/c0/9a/a77a1b8348f5377b156b54a542dde3e2d31767524a654005c3e59963bb91/napari-bacseg-1.0.8.tar.gz (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9), version: 1.0.8 2023-09-22T21:18:57,866 Skipping link: No binaries permitted for napari-bacseg: https://files.pythonhosted.org/packages/ba/d5/fb119b3ddcc7464293b5eb449015e1caeaa04404c3341ab1093243b46dc4/napari_bacseg-1.0.8-py3-none-any.whl (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:57,867 Found link https://files.pythonhosted.org/packages/4d/f0/51f49c111d07b80049adfa59e7bdf1fb465be62799ecdaac8aa48640e766/napari-bacseg-1.0.9.tar.gz (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9), version: 1.0.9 2023-09-22T21:18:57,867 Skipping link: No binaries permitted for napari-bacseg: https://files.pythonhosted.org/packages/fc/dd/4f4a7d2b2cb0549bc2728ceed84b042f31de8b1c6c1f739169f84bf45f1d/napari_bacseg-1.0.9-py3-none-any.whl (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:57,868 Found link https://files.pythonhosted.org/packages/a0/34/72afc7867dce3911cbdfee4c3a6d2bd648232b8617fc6382e2d2ddf54cba/napari-bacseg-1.0.10.tar.gz (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9), version: 1.0.10 2023-09-22T21:18:57,869 Skipping link: No binaries permitted for napari-bacseg: https://files.pythonhosted.org/packages/dd/cc/502d49d04d18bdd179828c1c641f17fca62b038b19aaf7737f8fcd612599/napari_bacseg-1.0.10-py3-none-any.whl (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:57,870 Found link https://files.pythonhosted.org/packages/6f/49/57a810e3b7a5e0179f0ea9fd8167ea8580ac515b301cde6bdd72e48e792a/napari-bacseg-1.0.11.tar.gz (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9), version: 1.0.11 2023-09-22T21:18:57,870 Skipping link: No binaries permitted for napari-bacseg: https://files.pythonhosted.org/packages/20/82/a9ad27154d2e6c65e98df5f5b210b5f1dfa4b9f9beb0f8cb4d0bc25b5854/napari_bacseg-1.0.11-py3-none-any.whl (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:57,871 Found link https://files.pythonhosted.org/packages/68/c8/7aba800fb2d03ed3c99db04f9920b8941284a947251456b365d6873b619a/napari-bacseg-1.0.12.tar.gz (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9), version: 1.0.12 2023-09-22T21:18:57,872 Skipping link: No binaries permitted for napari-bacseg: https://files.pythonhosted.org/packages/fe/7f/408754ee07d759c14909d9b9dbdc922763750c1740b637ac776f6715603b/napari_bacseg-1.0.12-py3-none-any.whl (from https://pypi.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:57,872 Fetching project page and analyzing links: https://www.piwheels.org/simple/napari-bacseg/ 2023-09-22T21:18:57,873 Getting page https://www.piwheels.org/simple/napari-bacseg/ 2023-09-22T21:18:57,874 Found index url https://www.piwheels.org/simple/ 2023-09-22T21:18:58,036 Fetched page https://www.piwheels.org/simple/napari-bacseg/ as text/html 2023-09-22T21:18:58,040 Skipping link: No binaries permitted for napari-bacseg: https://www.piwheels.org/simple/napari-bacseg/napari_bacseg-1.0.10-py3-none-any.whl#sha256=8ecbc1258e5f4d0a9f46009f33437d35577435b8d3411a229eeccd2b1a1122ef (from https://www.piwheels.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:58,041 Skipping link: No binaries permitted for napari-bacseg: https://www.piwheels.org/simple/napari-bacseg/napari_bacseg-1.0.9-py3-none-any.whl#sha256=b5fb966688543cd9a951253e7a3490ecf41aa4d4c55811a05653dade3671ab4d (from https://www.piwheels.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:58,041 Skipping link: No binaries permitted for napari-bacseg: https://www.piwheels.org/simple/napari-bacseg/napari_bacseg-1.0.8-py3-none-any.whl#sha256=a23684423892e9dc50136de7f70b5ef659df335eb2feffc9a93f2c88d006a0fa (from https://www.piwheels.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:58,042 Skipping link: No binaries permitted for napari-bacseg: https://www.piwheels.org/simple/napari-bacseg/napari_bacseg-1.0.7.1-py3-none-any.whl#sha256=1b4a2f91632731d48dfca6906455c124dc7163650807719e34b7bc66c46f7143 (from https://www.piwheels.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:58,042 Skipping link: No binaries permitted for napari-bacseg: https://www.piwheels.org/simple/napari-bacseg/napari_bacseg-1.0.7-py3-none-any.whl#sha256=b0fda0bbc9bfa5aae0551425a006f2bc21fe255b307d1ee26529c40b7c6c4681 (from https://www.piwheels.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:58,042 Skipping link: No binaries permitted for napari-bacseg: https://www.piwheels.org/simple/napari-bacseg/napari_bacseg-1.0.6-py3-none-any.whl#sha256=04f7a29e1264284094c20d71bfdd2797321bc86bb0d215a7c4911e4f7c2b1d6c (from https://www.piwheels.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:58,043 Skipping link: No binaries permitted for napari-bacseg: https://www.piwheels.org/simple/napari-bacseg/napari_bacseg-1.0.5-py3-none-any.whl#sha256=b97bc9d712391b5db443870fa7caac21eb321274490e7af0fa981c95f455ecd0 (from https://www.piwheels.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:58,044 Skipping link: No binaries permitted for napari-bacseg: https://www.piwheels.org/simple/napari-bacseg/napari_bacseg-1.0.2-py3-none-any.whl#sha256=2f124001ab815f319da0d21abb25ea362a7f005171981ba22da81977c910868c (from https://www.piwheels.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:58,044 Skipping link: No binaries permitted for napari-bacseg: https://www.piwheels.org/simple/napari-bacseg/napari_bacseg-1.0.1-py3-none-any.whl#sha256=884b1d291b29108cab11cddb0b5ad814f51122647fa314642e48d366563c80f0 (from https://www.piwheels.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:58,044 Skipping link: No binaries permitted for napari-bacseg: https://www.piwheels.org/simple/napari-bacseg/napari_bacseg-1.0.0-py3-none-any.whl#sha256=4372a3b7570dbfa2640afaf4582ef6a24ebe7a94f3e01d57c87d7b0d1f3058e8 (from https://www.piwheels.org/simple/napari-bacseg/) (requires-python:>=3.9) 2023-09-22T21:18:58,045 Skipping link: not a file: https://www.piwheels.org/simple/napari-bacseg/ 2023-09-22T21:18:58,046 Skipping link: not a file: https://pypi.org/simple/napari-bacseg/ 2023-09-22T21:18:58,066 Given no hashes to check 1 links for project 'napari-bacseg': discarding no candidates 2023-09-22T21:18:58,084 Collecting napari-bacseg==1.0.4 2023-09-22T21:18:58,086 Created temporary directory: /tmp/pip-unpack-x88b4n2s 2023-09-22T21:18:58,306 Downloading napari-bacseg-1.0.4.tar.gz (237 kB) 2023-09-22T21:18:58,596 Added napari-bacseg==1.0.4 from https://files.pythonhosted.org/packages/99/59/64ef76535888414b6f5dee806bd696ccc8cf0fd6f73154899376a16f1247/napari-bacseg-1.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-vfdznrad' 2023-09-22T21:18:58,602 Created temporary directory: /tmp/pip-build-env-eink2_6m 2023-09-22T21:18:58,607 Installing build dependencies: started 2023-09-22T21:18:58,608 Running command pip subprocess to install build dependencies 2023-09-22T21:18:59,766 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-22T21:19:00,254 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-22T21:19:01,822 Collecting setuptools>=42.0.0 2023-09-22T21:19:01,823 Obtaining dependency information for setuptools>=42.0.0 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-22T21:19:01,829 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-22T21:19:02,038 Collecting wheel 2023-09-22T21:19:02,053 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-22T21:19:02,349 Collecting setuptools_scm 2023-09-22T21:19:02,350 Obtaining dependency information for setuptools_scm from https://files.pythonhosted.org/packages/ca/04/4ea91c627355ae6d976bf7f1fc2815372a96b1b87bf290c8d726d10a08a1/setuptools_scm-8.0.3-py3-none-any.whl.metadata 2023-09-22T21:19:02,357 Using cached setuptools_scm-8.0.3-py3-none-any.whl.metadata (6.1 kB) 2023-09-22T21:19:02,704 Collecting packaging>=20 (from setuptools_scm) 2023-09-22T21:19:02,720 Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB) 2023-09-22T21:19:02,750 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-22T21:19:02,773 Using cached setuptools_scm-8.0.3-py3-none-any.whl (41 kB) 2023-09-22T21:19:05,475 Installing collected packages: wheel, setuptools, packaging, setuptools_scm 2023-09-22T21:19:05,698 Creating /tmp/pip-build-env-eink2_6m/overlay/local/bin 2023-09-22T21:19:05,700 changing mode of /tmp/pip-build-env-eink2_6m/overlay/local/bin/wheel to 755 2023-09-22T21:19:08,237 Successfully installed packaging-23.1 setuptools-68.2.2 setuptools_scm-8.0.3 wheel-0.41.2 2023-09-22T21:19:08,767 Installing build dependencies: finished with status 'done' 2023-09-22T21:19:08,771 Getting requirements to build wheel: started 2023-09-22T21:19:08,772 Running command Getting requirements to build wheel 2023-09-22T21:19:09,350 Getting requirements to build wheel: finished with status 'done' 2023-09-22T21:19:09,372 Created temporary directory: /tmp/pip-modern-metadata-ui9e5rjf 2023-09-22T21:19:09,375 Preparing metadata (pyproject.toml): started 2023-09-22T21:19:09,376 Running command Preparing metadata (pyproject.toml) 2023-09-22T21:19:10,237 /tmp/pip-build-env-eink2_6m/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:73: _WouldIgnoreField: `license` defined outside of `pyproject.toml` would be ignored. 2023-09-22T21:19:10,237 !! 2023-09-22T21:19:10,239 ******************************************************************************** 2023-09-22T21:19:10,239 ########################################################################## 2023-09-22T21:19:10,240 # configuration would be ignored/result in error due to `pyproject.toml` # 2023-09-22T21:19:10,240 ########################################################################## 2023-09-22T21:19:10,242 The following seems to be defined outside of `pyproject.toml`: 2023-09-22T21:19:10,243 `license = 'BSD-3-Clause'` 2023-09-22T21:19:10,244 According to the spec (see the link below), however, setuptools CANNOT 2023-09-22T21:19:10,245 consider this value unless `license` is listed as `dynamic`. 2023-09-22T21:19:10,246 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2023-09-22T21:19:10,247 For the time being, `setuptools` will still consider the given value (as a 2023-09-22T21:19:10,248 **transitional** measure), but please note that future releases of setuptools will 2023-09-22T21:19:10,248 follow strictly the standard. 2023-09-22T21:19:10,249 To prevent this warning, you can list `license` under `dynamic` or alternatively 2023-09-22T21:19:10,249 remove the `[project]` table from your file and rely entirely on other means of 2023-09-22T21:19:10,250 configuration. 2023-09-22T21:19:10,251 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-09-22T21:19:10,251 or your builds will no longer be supported. 2023-09-22T21:19:10,252 ******************************************************************************** 2023-09-22T21:19:10,253 !! 2023-09-22T21:19:10,253 _handle_missing_dynamic(dist, project_table) 2023-09-22T21:19:10,254 /tmp/pip-build-env-eink2_6m/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:73: _WouldIgnoreField: `entry-points` defined outside of `pyproject.toml` would be ignored. 2023-09-22T21:19:10,254 !! 2023-09-22T21:19:10,255 ******************************************************************************** 2023-09-22T21:19:10,256 ########################################################################## 2023-09-22T21:19:10,256 # configuration would be ignored/result in error due to `pyproject.toml` # 2023-09-22T21:19:10,257 ########################################################################## 2023-09-22T21:19:10,258 The following seems to be defined outside of `pyproject.toml`: 2023-09-22T21:19:10,259 `entry-points = {'napari.manifest': ['napari-bacseg = napari_bacseg:napari.yaml']}` 2023-09-22T21:19:10,260 According to the spec (see the link below), however, setuptools CANNOT 2023-09-22T21:19:10,260 consider this value unless `entry-points` is listed as `dynamic`. 2023-09-22T21:19:10,261 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2023-09-22T21:19:10,263 For the time being, `setuptools` will still consider the given value (as a 2023-09-22T21:19:10,263 **transitional** measure), but please note that future releases of setuptools will 2023-09-22T21:19:10,264 follow strictly the standard. 2023-09-22T21:19:10,265 To prevent this warning, you can list `entry-points` under `dynamic` or alternatively 2023-09-22T21:19:10,266 remove the `[project]` table from your file and rely entirely on other means of 2023-09-22T21:19:10,266 configuration. 2023-09-22T21:19:10,267 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-09-22T21:19:10,268 or your builds will no longer be supported. 2023-09-22T21:19:10,269 ******************************************************************************** 2023-09-22T21:19:10,270 !! 2023-09-22T21:19:10,271 _handle_missing_dynamic(dist, project_table) 2023-09-22T21:19:10,271 /tmp/pip-build-env-eink2_6m/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:73: _WouldIgnoreField: `dependencies` defined outside of `pyproject.toml` would be ignored. 2023-09-22T21:19:10,272 !! 2023-09-22T21:19:10,273 ******************************************************************************** 2023-09-22T21:19:10,274 ########################################################################## 2023-09-22T21:19:10,275 # configuration would be ignored/result in error due to `pyproject.toml` # 2023-09-22T21:19:10,275 ########################################################################## 2023-09-22T21:19:10,277 The following seems to be defined outside of `pyproject.toml`: 2023-09-22T21:19:10,278 `dependencies = ['napari >= 0.4.17', 'numpy == 1.23.5', 'qtpy', 'cellpose[all] >= 2.1.1', 'numba>=0.43.1', 'scipy', 'torch', 'opencv-python-headless', 'natsort', 'tqdm', 'imagecodecs', 'tifffile', 'pandas', 'mat4py', 'glob2', 'matplotlib', 'scikit-image', 'roifile', 'openpyxl', 'shapely', 'colicoords', 'scikit-image', 'shapely', 'psutil', 'xmltodict', 'astropy', 'tiler', 'imageio-ffmpeg', 'matplotlib']` 2023-09-22T21:19:10,280 According to the spec (see the link below), however, setuptools CANNOT 2023-09-22T21:19:10,280 consider this value unless `dependencies` is listed as `dynamic`. 2023-09-22T21:19:10,281 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2023-09-22T21:19:10,283 For the time being, `setuptools` will still consider the given value (as a 2023-09-22T21:19:10,284 **transitional** measure), but please note that future releases of setuptools will 2023-09-22T21:19:10,284 follow strictly the standard. 2023-09-22T21:19:10,285 To prevent this warning, you can list `dependencies` under `dynamic` or alternatively 2023-09-22T21:19:10,286 remove the `[project]` table from your file and rely entirely on other means of 2023-09-22T21:19:10,287 configuration. 2023-09-22T21:19:10,288 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-09-22T21:19:10,289 or your builds will no longer be supported. 2023-09-22T21:19:10,289 ******************************************************************************** 2023-09-22T21:19:10,292 !! 2023-09-22T21:19:10,294 _handle_missing_dynamic(dist, project_table) 2023-09-22T21:19:10,296 /tmp/pip-build-env-eink2_6m/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:73: _WouldIgnoreField: `optional-dependencies` defined outside of `pyproject.toml` would be ignored. 2023-09-22T21:19:10,299 !! 2023-09-22T21:19:10,303 ******************************************************************************** 2023-09-22T21:19:10,305 ########################################################################## 2023-09-22T21:19:10,307 # configuration would be ignored/result in error due to `pyproject.toml` # 2023-09-22T21:19:10,309 ########################################################################## 2023-09-22T21:19:10,314 The following seems to be defined outside of `pyproject.toml`: 2023-09-22T21:19:10,318 `optional-dependencies = {'testing': ['tox', 'pytest # https://docs.pytest.org/en/latest/contents.html', 'pytest-cov # https://pytest-cov.readthedocs.io/en/latest/', 'pytest-qt # https://pytest-qt.readthedocs.io/en/latest/', 'napari', 'pyqt5']}` 2023-09-22T21:19:10,321 According to the spec (see the link below), however, setuptools CANNOT 2023-09-22T21:19:10,321 consider this value unless `optional-dependencies` is listed as `dynamic`. 2023-09-22T21:19:10,322 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2023-09-22T21:19:10,323 For the time being, `setuptools` will still consider the given value (as a 2023-09-22T21:19:10,324 **transitional** measure), but please note that future releases of setuptools will 2023-09-22T21:19:10,325 follow strictly the standard. 2023-09-22T21:19:10,326 To prevent this warning, you can list `optional-dependencies` under `dynamic` or alternatively 2023-09-22T21:19:10,327 remove the `[project]` table from your file and rely entirely on other means of 2023-09-22T21:19:10,328 configuration. 2023-09-22T21:19:10,330 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-09-22T21:19:10,331 or your builds will no longer be supported. 2023-09-22T21:19:10,331 ******************************************************************************** 2023-09-22T21:19:10,334 !! 2023-09-22T21:19:10,335 _handle_missing_dynamic(dist, project_table) 2023-09-22T21:19:10,640 running dist_info 2023-09-22T21:19:10,646 creating /tmp/pip-modern-metadata-ui9e5rjf/napari_bacseg.egg-info 2023-09-22T21:19:10,651 writing /tmp/pip-modern-metadata-ui9e5rjf/napari_bacseg.egg-info/PKG-INFO 2023-09-22T21:19:10,657 writing dependency_links to /tmp/pip-modern-metadata-ui9e5rjf/napari_bacseg.egg-info/dependency_links.txt 2023-09-22T21:19:10,658 writing entry points to /tmp/pip-modern-metadata-ui9e5rjf/napari_bacseg.egg-info/entry_points.txt 2023-09-22T21:19:10,661 writing requirements to /tmp/pip-modern-metadata-ui9e5rjf/napari_bacseg.egg-info/requires.txt 2023-09-22T21:19:10,662 writing top-level names to /tmp/pip-modern-metadata-ui9e5rjf/napari_bacseg.egg-info/top_level.txt 2023-09-22T21:19:10,664 writing manifest file '/tmp/pip-modern-metadata-ui9e5rjf/napari_bacseg.egg-info/SOURCES.txt' 2023-09-22T21:19:10,704 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-09-22T21:19:10,708 reading manifest file '/tmp/pip-modern-metadata-ui9e5rjf/napari_bacseg.egg-info/SOURCES.txt' 2023-09-22T21:19:10,710 reading manifest template 'MANIFEST.in' 2023-09-22T21:19:10,711 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-09-22T21:19:10,712 warning: no previously-included files matching '*.py[co]' found under directory '*' 2023-09-22T21:19:10,713 adding license file 'LICENSE' 2023-09-22T21:19:10,716 writing manifest file '/tmp/pip-modern-metadata-ui9e5rjf/napari_bacseg.egg-info/SOURCES.txt' 2023-09-22T21:19:10,717 creating '/tmp/pip-modern-metadata-ui9e5rjf/napari_bacseg-1.0.4.dist-info' 2023-09-22T21:19:10,890 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-22T21:19:10,896 Source in /tmp/pip-wheel-rzn_7vee/napari-bacseg_ca6c522ba4b84c0586189505737a77df has version 1.0.4, which satisfies requirement napari-bacseg==1.0.4 from https://files.pythonhosted.org/packages/99/59/64ef76535888414b6f5dee806bd696ccc8cf0fd6f73154899376a16f1247/napari-bacseg-1.0.4.tar.gz 2023-09-22T21:19:10,896 Removed napari-bacseg==1.0.4 from https://files.pythonhosted.org/packages/99/59/64ef76535888414b6f5dee806bd696ccc8cf0fd6f73154899376a16f1247/napari-bacseg-1.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-vfdznrad' 2023-09-22T21:19:10,902 Created temporary directory: /tmp/pip-unpack-m97tm42f 2023-09-22T21:19:10,904 Created temporary directory: /tmp/pip-unpack-wxqw8xoa 2023-09-22T21:19:10,946 Building wheels for collected packages: napari-bacseg 2023-09-22T21:19:10,950 Created temporary directory: /tmp/pip-wheel-yb4929gi 2023-09-22T21:19:10,951 Destination directory: /tmp/pip-wheel-yb4929gi 2023-09-22T21:19:10,953 Building wheel for napari-bacseg (pyproject.toml): started 2023-09-22T21:19:10,955 Running command Building wheel for napari-bacseg (pyproject.toml) 2023-09-22T21:19:11,530 /tmp/pip-build-env-eink2_6m/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:73: _WouldIgnoreField: `license` defined outside of `pyproject.toml` would be ignored. 2023-09-22T21:19:11,530 !! 2023-09-22T21:19:11,531 ******************************************************************************** 2023-09-22T21:19:11,532 ########################################################################## 2023-09-22T21:19:11,532 # configuration would be ignored/result in error due to `pyproject.toml` # 2023-09-22T21:19:11,533 ########################################################################## 2023-09-22T21:19:11,534 The following seems to be defined outside of `pyproject.toml`: 2023-09-22T21:19:11,536 `license = 'BSD-3-Clause'` 2023-09-22T21:19:11,537 According to the spec (see the link below), however, setuptools CANNOT 2023-09-22T21:19:11,537 consider this value unless `license` is listed as `dynamic`. 2023-09-22T21:19:11,539 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2023-09-22T21:19:11,540 For the time being, `setuptools` will still consider the given value (as a 2023-09-22T21:19:11,540 **transitional** measure), but please note that future releases of setuptools will 2023-09-22T21:19:11,541 follow strictly the standard. 2023-09-22T21:19:11,542 To prevent this warning, you can list `license` under `dynamic` or alternatively 2023-09-22T21:19:11,542 remove the `[project]` table from your file and rely entirely on other means of 2023-09-22T21:19:11,543 configuration. 2023-09-22T21:19:11,543 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-09-22T21:19:11,544 or your builds will no longer be supported. 2023-09-22T21:19:11,544 ******************************************************************************** 2023-09-22T21:19:11,545 !! 2023-09-22T21:19:11,546 _handle_missing_dynamic(dist, project_table) 2023-09-22T21:19:11,546 /tmp/pip-build-env-eink2_6m/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:73: _WouldIgnoreField: `entry-points` defined outside of `pyproject.toml` would be ignored. 2023-09-22T21:19:11,547 !! 2023-09-22T21:19:11,548 ******************************************************************************** 2023-09-22T21:19:11,548 ########################################################################## 2023-09-22T21:19:11,549 # configuration would be ignored/result in error due to `pyproject.toml` # 2023-09-22T21:19:11,549 ########################################################################## 2023-09-22T21:19:11,550 The following seems to be defined outside of `pyproject.toml`: 2023-09-22T21:19:11,551 `entry-points = {'napari.manifest': ['napari-bacseg = napari_bacseg:napari.yaml']}` 2023-09-22T21:19:11,553 According to the spec (see the link below), however, setuptools CANNOT 2023-09-22T21:19:11,553 consider this value unless `entry-points` is listed as `dynamic`. 2023-09-22T21:19:11,554 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2023-09-22T21:19:11,556 For the time being, `setuptools` will still consider the given value (as a 2023-09-22T21:19:11,556 **transitional** measure), but please note that future releases of setuptools will 2023-09-22T21:19:11,557 follow strictly the standard. 2023-09-22T21:19:11,558 To prevent this warning, you can list `entry-points` under `dynamic` or alternatively 2023-09-22T21:19:11,559 remove the `[project]` table from your file and rely entirely on other means of 2023-09-22T21:19:11,559 configuration. 2023-09-22T21:19:11,560 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-09-22T21:19:11,561 or your builds will no longer be supported. 2023-09-22T21:19:11,561 ******************************************************************************** 2023-09-22T21:19:11,563 !! 2023-09-22T21:19:11,563 _handle_missing_dynamic(dist, project_table) 2023-09-22T21:19:11,564 /tmp/pip-build-env-eink2_6m/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:73: _WouldIgnoreField: `dependencies` defined outside of `pyproject.toml` would be ignored. 2023-09-22T21:19:11,564 !! 2023-09-22T21:19:11,565 ******************************************************************************** 2023-09-22T21:19:11,566 ########################################################################## 2023-09-22T21:19:11,567 # configuration would be ignored/result in error due to `pyproject.toml` # 2023-09-22T21:19:11,567 ########################################################################## 2023-09-22T21:19:11,569 The following seems to be defined outside of `pyproject.toml`: 2023-09-22T21:19:11,570 `dependencies = ['napari >= 0.4.17', 'numpy == 1.23.5', 'qtpy', 'cellpose[all] >= 2.1.1', 'numba>=0.43.1', 'scipy', 'torch', 'opencv-python-headless', 'natsort', 'tqdm', 'imagecodecs', 'tifffile', 'pandas', 'mat4py', 'glob2', 'matplotlib', 'scikit-image', 'roifile', 'openpyxl', 'shapely', 'colicoords', 'scikit-image', 'shapely', 'psutil', 'xmltodict', 'astropy', 'tiler', 'imageio-ffmpeg', 'matplotlib']` 2023-09-22T21:19:11,571 According to the spec (see the link below), however, setuptools CANNOT 2023-09-22T21:19:11,572 consider this value unless `dependencies` is listed as `dynamic`. 2023-09-22T21:19:11,573 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2023-09-22T21:19:11,574 For the time being, `setuptools` will still consider the given value (as a 2023-09-22T21:19:11,574 **transitional** measure), but please note that future releases of setuptools will 2023-09-22T21:19:11,575 follow strictly the standard. 2023-09-22T21:19:11,576 To prevent this warning, you can list `dependencies` under `dynamic` or alternatively 2023-09-22T21:19:11,576 remove the `[project]` table from your file and rely entirely on other means of 2023-09-22T21:19:11,576 configuration. 2023-09-22T21:19:11,578 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-09-22T21:19:11,578 or your builds will no longer be supported. 2023-09-22T21:19:11,578 ******************************************************************************** 2023-09-22T21:19:11,579 !! 2023-09-22T21:19:11,580 _handle_missing_dynamic(dist, project_table) 2023-09-22T21:19:11,581 /tmp/pip-build-env-eink2_6m/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:73: _WouldIgnoreField: `optional-dependencies` defined outside of `pyproject.toml` would be ignored. 2023-09-22T21:19:11,581 !! 2023-09-22T21:19:11,583 ******************************************************************************** 2023-09-22T21:19:11,583 ########################################################################## 2023-09-22T21:19:11,584 # configuration would be ignored/result in error due to `pyproject.toml` # 2023-09-22T21:19:11,585 ########################################################################## 2023-09-22T21:19:11,586 The following seems to be defined outside of `pyproject.toml`: 2023-09-22T21:19:11,587 `optional-dependencies = {'testing': ['tox', 'pytest # https://docs.pytest.org/en/latest/contents.html', 'pytest-cov # https://pytest-cov.readthedocs.io/en/latest/', 'pytest-qt # https://pytest-qt.readthedocs.io/en/latest/', 'napari', 'pyqt5']}` 2023-09-22T21:19:11,589 According to the spec (see the link below), however, setuptools CANNOT 2023-09-22T21:19:11,589 consider this value unless `optional-dependencies` is listed as `dynamic`. 2023-09-22T21:19:11,590 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2023-09-22T21:19:11,592 For the time being, `setuptools` will still consider the given value (as a 2023-09-22T21:19:11,592 **transitional** measure), but please note that future releases of setuptools will 2023-09-22T21:19:11,593 follow strictly the standard. 2023-09-22T21:19:11,594 To prevent this warning, you can list `optional-dependencies` under `dynamic` or alternatively 2023-09-22T21:19:11,594 remove the `[project]` table from your file and rely entirely on other means of 2023-09-22T21:19:11,595 configuration. 2023-09-22T21:19:11,596 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-09-22T21:19:11,597 or your builds will no longer be supported. 2023-09-22T21:19:11,598 ******************************************************************************** 2023-09-22T21:19:11,599 !! 2023-09-22T21:19:11,599 _handle_missing_dynamic(dist, project_table) 2023-09-22T21:19:11,831 running bdist_wheel 2023-09-22T21:19:11,854 running build 2023-09-22T21:19:11,854 running build_py 2023-09-22T21:19:11,860 creating build 2023-09-22T21:19:11,861 creating build/lib 2023-09-22T21:19:11,861 creating build/lib/napari_bacseg 2023-09-22T21:19:11,862 copying src/napari_bacseg/_utils_imagej.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,864 copying src/napari_bacseg/napari_ui.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,866 copying src/napari_bacseg/_utils_tiler.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,868 copying src/napari_bacseg/_utils_refine.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,869 copying src/napari_bacseg/__init__.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,871 copying src/napari_bacseg/_utils_cellpose.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,873 copying src/napari_bacseg/_utils_database_IO.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,876 copying src/napari_bacseg/bacseg_ui.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,880 copying src/napari_bacseg/_version.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,882 copying src/napari_bacseg/_utils_oufti.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,884 copying src/napari_bacseg/_utils_database.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,887 copying src/napari_bacseg/_utils.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,890 copying src/napari_bacseg/_utils_json.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,892 copying src/napari_bacseg/_utils_interface_events.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,895 copying src/napari_bacseg/_utils_colicoords.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,898 copying src/napari_bacseg/gapseq_ui.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,899 copying src/napari_bacseg/_widget.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,903 copying src/napari_bacseg/_utils_statistics.py -> build/lib/napari_bacseg 2023-09-22T21:19:11,908 creating build/lib/_dev 2023-09-22T21:19:11,909 copying src/_dev/omnipose_train.py -> build/lib/_dev 2023-09-22T21:19:11,911 copying src/_dev/process_alex_datadump_clinical.py -> build/lib/_dev 2023-09-22T21:19:11,914 copying src/_dev/fits_dev.py -> build/lib/_dev 2023-09-22T21:19:11,916 copying src/_dev/oufti_dilate_with_midlines.py -> build/lib/_dev 2023-09-22T21:19:11,919 copying src/_dev/akseg_dev2.py -> build/lib/_dev 2023-09-22T21:19:11,921 copying src/_dev/autocontast_dev.py -> build/lib/_dev 2023-09-22T21:19:11,924 copying src/_dev/cellposedev.py -> build/lib/_dev 2023-09-22T21:19:11,926 copying src/_dev/video_iamges.py -> build/lib/_dev 2023-09-22T21:19:11,928 copying src/_dev/generate_scanr_movie.py -> build/lib/_dev 2023-09-22T21:19:11,930 copying src/_dev/process_conor_datadump.py -> build/lib/_dev 2023-09-22T21:19:11,933 copying src/_dev/get_akseg_stats.py -> build/lib/_dev 2023-09-22T21:19:11,936 copying src/_dev/colicoords_cellldist_dev.py -> build/lib/_dev 2023-09-22T21:19:11,938 copying src/_dev/omnipose_dev.py -> build/lib/_dev 2023-09-22T21:19:11,940 copying src/_dev/omnipose_midlines.py -> build/lib/_dev 2023-09-22T21:19:11,942 copying src/_dev/edit_database_columns.py -> build/lib/_dev 2023-09-22T21:19:11,944 copying src/_dev/__init__.py -> build/lib/_dev 2023-09-22T21:19:11,946 copying src/_dev/sort_midlines.py -> build/lib/_dev 2023-09-22T21:19:11,948 copying src/_dev/rebuild_usermeta.py -> build/lib/_dev 2023-09-22T21:19:11,951 copying src/_dev/akseg_dev.py -> build/lib/_dev 2023-09-22T21:19:11,954 copying src/_dev/align_alex_datadump.py -> build/lib/_dev 2023-09-22T21:19:11,956 copying src/_dev/recreate_user_metadata.py -> build/lib/_dev 2023-09-22T21:19:11,958 copying src/_dev/move_pillar_data.py -> build/lib/_dev 2023-09-22T21:19:11,961 copying src/_dev/move_AluGasketDFP.py -> build/lib/_dev 2023-09-22T21:19:11,964 copying src/_dev/akseg_db_stats.py -> build/lib/_dev 2023-09-22T21:19:11,966 copying src/_dev/Export Masks to AKSEG v5 dev.py -> build/lib/_dev 2023-09-22T21:19:11,968 copying src/_dev/rebuild_usermeta_2.py -> build/lib/_dev 2023-09-22T21:19:11,970 copying src/_dev/process_gramstain_datadump.py -> build/lib/_dev 2023-09-22T21:19:11,972 copying src/_dev/zooniverse_upload.py -> build/lib/_dev 2023-09-22T21:19:11,975 copying src/_dev/fix_alison_missing_file_list.py -> build/lib/_dev 2023-09-22T21:19:11,977 copying src/_dev/process_alex_datadump.py -> build/lib/_dev 2023-09-22T21:19:11,979 copying src/_dev/zooniverse.py -> build/lib/_dev 2023-09-22T21:19:11,981 copying src/_dev/stelios_stats.py -> build/lib/_dev 2023-09-22T21:19:11,983 copying src/_dev/new_read_akseg_directory.py -> build/lib/_dev 2023-09-22T21:19:11,985 copying src/_dev/move_unlearning_files.py -> build/lib/_dev 2023-09-22T21:19:11,988 copying src/_dev/zooniverse_titrations.py -> build/lib/_dev 2023-09-22T21:19:11,990 copying src/_dev/cellposeshapely.py -> build/lib/_dev 2023-09-22T21:19:11,992 copying src/_dev/tile_meta_check.py -> build/lib/_dev 2023-09-22T21:19:11,993 copying src/_dev/update_img_metadata.py -> build/lib/_dev 2023-09-22T21:19:11,995 copying src/_dev/akseg_txt_metadata.py -> build/lib/_dev 2023-09-22T21:19:11,997 copying src/_dev/get_species_info.py -> build/lib/_dev 2023-09-22T21:19:11,999 copying src/_dev/updade_akseg_metadata.py -> build/lib/_dev 2023-09-22T21:19:12,000 copying src/_dev/zooniverse_move_titrations.py -> build/lib/_dev 2023-09-22T21:19:12,002 copying src/_dev/move_conor_nim_dfp_data.py -> build/lib/_dev 2023-09-22T21:19:12,005 copying src/_dev/ScanR dev.py -> build/lib/_dev 2023-09-22T21:19:12,007 copying src/_dev/read_non_tif.py -> build/lib/_dev 2023-09-22T21:19:12,008 copying src/_dev/matplotlib_Events.py -> build/lib/_dev 2023-09-22T21:19:12,010 copying src/_dev/Troodos dev.py -> build/lib/_dev 2023-09-22T21:19:12,012 copying src/_dev/tiler_dev.py -> build/lib/_dev 2023-09-22T21:19:12,014 copying src/_dev/move_pillar_zstack_data.py -> build/lib/_dev 2023-09-22T21:19:12,017 copying src/_dev/nim_dev.py -> build/lib/_dev 2023-09-22T21:19:12,019 copying src/_dev/oufti_dilate.py -> build/lib/_dev 2023-09-22T21:19:12,022 copying src/_dev/check_metadata.py -> build/lib/_dev 2023-09-22T21:19:12,024 copying src/_dev/zooniverse_move.py -> build/lib/_dev 2023-09-22T21:19:12,026 copying src/_dev/alison_datadump.py -> build/lib/_dev 2023-09-22T21:19:12,028 copying src/_dev/new_metadata2.pickle.py -> build/lib/_dev 2023-09-22T21:19:12,030 copying src/_dev/colicoords_ldist_dev.py -> build/lib/_dev 2023-09-22T21:19:12,032 copying src/_dev/luke__script.py -> build/lib/_dev 2023-09-22T21:19:12,034 copying src/_dev/zooniverse_titration_upload.py -> build/lib/_dev 2023-09-22T21:19:12,037 copying src/_dev/database_dev.py -> build/lib/_dev 2023-09-22T21:19:12,040 creating build/lib/napari_bacseg/_tests 2023-09-22T21:19:12,041 copying src/napari_bacseg/_tests/__init__.py -> build/lib/napari_bacseg/_tests 2023-09-22T21:19:12,042 copying src/napari_bacseg/_tests/test_bacseg.py -> build/lib/napari_bacseg/_tests 2023-09-22T21:19:12,045 copying src/napari_bacseg/_tests/test_widget.py -> build/lib/napari_bacseg/_tests 2023-09-22T21:19:12,046 running egg_info 2023-09-22T21:19:12,051 writing src/napari_bacseg.egg-info/PKG-INFO 2023-09-22T21:19:12,056 writing dependency_links to src/napari_bacseg.egg-info/dependency_links.txt 2023-09-22T21:19:12,058 writing entry points to src/napari_bacseg.egg-info/entry_points.txt 2023-09-22T21:19:12,061 writing requirements to src/napari_bacseg.egg-info/requires.txt 2023-09-22T21:19:12,062 writing top-level names to src/napari_bacseg.egg-info/top_level.txt 2023-09-22T21:19:12,093 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-09-22T21:19:12,096 reading manifest file 'src/napari_bacseg.egg-info/SOURCES.txt' 2023-09-22T21:19:12,101 reading manifest template 'MANIFEST.in' 2023-09-22T21:19:12,102 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-09-22T21:19:12,103 warning: no previously-included files matching '*.py[co]' found under directory '*' 2023-09-22T21:19:12,104 adding license file 'LICENSE' 2023-09-22T21:19:12,109 writing manifest file 'src/napari_bacseg.egg-info/SOURCES.txt' 2023-09-22T21:19:12,113 copying src/napari_bacseg/bacseg_ui.ui -> build/lib/napari_bacseg 2023-09-22T21:19:12,123 copying src/napari_bacseg/napari.yaml -> build/lib/napari_bacseg 2023-09-22T21:19:12,138 installing to build/bdist.linux-armv7l/wheel 2023-09-22T21:19:12,138 running install 2023-09-22T21:19:12,162 running install_lib 2023-09-22T21:19:12,168 creating build/bdist.linux-armv7l 2023-09-22T21:19:12,168 creating build/bdist.linux-armv7l/wheel 2023-09-22T21:19:12,170 creating build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,171 copying build/lib/napari_bacseg/_utils_imagej.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,173 copying build/lib/napari_bacseg/napari_ui.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,174 copying build/lib/napari_bacseg/bacseg_ui.ui -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,179 copying build/lib/napari_bacseg/_utils_tiler.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,181 copying build/lib/napari_bacseg/_utils_refine.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,183 copying build/lib/napari_bacseg/__init__.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,185 copying build/lib/napari_bacseg/_utils_cellpose.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,188 copying build/lib/napari_bacseg/_utils_database_IO.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,191 copying build/lib/napari_bacseg/bacseg_ui.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,195 copying build/lib/napari_bacseg/napari.yaml -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,197 copying build/lib/napari_bacseg/_version.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,198 copying build/lib/napari_bacseg/_utils_oufti.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,201 copying build/lib/napari_bacseg/_utils_database.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,204 copying build/lib/napari_bacseg/_utils.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,207 copying build/lib/napari_bacseg/_utils_json.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,209 copying build/lib/napari_bacseg/_utils_interface_events.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,212 creating build/bdist.linux-armv7l/wheel/napari_bacseg/_tests 2023-09-22T21:19:12,213 copying build/lib/napari_bacseg/_tests/__init__.py -> build/bdist.linux-armv7l/wheel/napari_bacseg/_tests 2023-09-22T21:19:12,215 copying build/lib/napari_bacseg/_tests/test_bacseg.py -> build/bdist.linux-armv7l/wheel/napari_bacseg/_tests 2023-09-22T21:19:12,217 copying build/lib/napari_bacseg/_tests/test_widget.py -> build/bdist.linux-armv7l/wheel/napari_bacseg/_tests 2023-09-22T21:19:12,219 copying build/lib/napari_bacseg/_utils_colicoords.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,221 copying build/lib/napari_bacseg/gapseq_ui.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,223 copying build/lib/napari_bacseg/_widget.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,226 copying build/lib/napari_bacseg/_utils_statistics.py -> build/bdist.linux-armv7l/wheel/napari_bacseg 2023-09-22T21:19:12,230 creating build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,231 copying build/lib/_dev/omnipose_train.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,232 copying build/lib/_dev/process_alex_datadump_clinical.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,235 copying build/lib/_dev/fits_dev.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,237 copying build/lib/_dev/oufti_dilate_with_midlines.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,239 copying build/lib/_dev/akseg_dev2.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,241 copying build/lib/_dev/autocontast_dev.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,243 copying build/lib/_dev/cellposedev.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,245 copying build/lib/_dev/video_iamges.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,247 copying build/lib/_dev/generate_scanr_movie.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,248 copying build/lib/_dev/process_conor_datadump.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,251 copying build/lib/_dev/get_akseg_stats.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,253 copying build/lib/_dev/colicoords_cellldist_dev.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,255 copying build/lib/_dev/omnipose_dev.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,257 copying build/lib/_dev/omnipose_midlines.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,258 copying build/lib/_dev/edit_database_columns.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,260 copying build/lib/_dev/__init__.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,261 copying build/lib/_dev/sort_midlines.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,264 copying build/lib/_dev/rebuild_usermeta.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,266 copying build/lib/_dev/akseg_dev.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,268 copying build/lib/_dev/align_alex_datadump.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,270 copying build/lib/_dev/recreate_user_metadata.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,271 copying build/lib/_dev/move_pillar_data.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,274 copying build/lib/_dev/move_AluGasketDFP.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,276 copying build/lib/_dev/akseg_db_stats.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,278 copying build/lib/_dev/Export Masks to AKSEG v5 dev.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,280 copying build/lib/_dev/rebuild_usermeta_2.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,282 copying build/lib/_dev/process_gramstain_datadump.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,284 copying build/lib/_dev/zooniverse_upload.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,287 copying build/lib/_dev/fix_alison_missing_file_list.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,289 copying build/lib/_dev/process_alex_datadump.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,292 copying build/lib/_dev/zooniverse.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,294 copying build/lib/_dev/stelios_stats.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,296 copying build/lib/_dev/new_read_akseg_directory.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,298 copying build/lib/_dev/move_unlearning_files.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,301 copying build/lib/_dev/zooniverse_titrations.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,303 copying build/lib/_dev/cellposeshapely.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,305 copying build/lib/_dev/tile_meta_check.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,306 copying build/lib/_dev/update_img_metadata.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,308 copying build/lib/_dev/akseg_txt_metadata.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,310 copying build/lib/_dev/get_species_info.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,312 copying build/lib/_dev/updade_akseg_metadata.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,314 copying build/lib/_dev/zooniverse_move_titrations.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,316 copying build/lib/_dev/move_conor_nim_dfp_data.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,318 copying build/lib/_dev/ScanR dev.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,321 copying build/lib/_dev/read_non_tif.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,322 copying build/lib/_dev/matplotlib_Events.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,324 copying build/lib/_dev/Troodos dev.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,325 copying build/lib/_dev/tiler_dev.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,327 copying build/lib/_dev/move_pillar_zstack_data.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,329 copying build/lib/_dev/nim_dev.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,331 copying build/lib/_dev/oufti_dilate.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,334 copying build/lib/_dev/check_metadata.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,336 copying build/lib/_dev/zooniverse_move.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,338 copying build/lib/_dev/alison_datadump.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,340 copying build/lib/_dev/new_metadata2.pickle.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,342 copying build/lib/_dev/colicoords_ldist_dev.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,344 copying build/lib/_dev/luke__script.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,346 copying build/lib/_dev/zooniverse_titration_upload.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,348 copying build/lib/_dev/database_dev.py -> build/bdist.linux-armv7l/wheel/_dev 2023-09-22T21:19:12,350 running install_egg_info 2023-09-22T21:19:12,355 Copying src/napari_bacseg.egg-info to build/bdist.linux-armv7l/wheel/napari_bacseg-1.0.4-py3.11.egg-info 2023-09-22T21:19:12,366 running install_scripts 2023-09-22T21:19:12,388 creating build/bdist.linux-armv7l/wheel/napari_bacseg-1.0.4.dist-info/WHEEL 2023-09-22T21:19:12,390 creating '/tmp/pip-wheel-yb4929gi/.tmp-wgor2dfi/napari_bacseg-1.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-22T21:19:12,393 adding '_dev/Export Masks to AKSEG v5 dev.py' 2023-09-22T21:19:12,395 adding '_dev/ScanR dev.py' 2023-09-22T21:19:12,397 adding '_dev/Troodos dev.py' 2023-09-22T21:19:12,398 adding '_dev/__init__.py' 2023-09-22T21:19:12,399 adding '_dev/akseg_db_stats.py' 2023-09-22T21:19:12,401 adding '_dev/akseg_dev.py' 2023-09-22T21:19:12,403 adding '_dev/akseg_dev2.py' 2023-09-22T21:19:12,405 adding '_dev/akseg_txt_metadata.py' 2023-09-22T21:19:12,406 adding '_dev/align_alex_datadump.py' 2023-09-22T21:19:12,410 adding '_dev/alison_datadump.py' 2023-09-22T21:19:12,412 adding '_dev/autocontast_dev.py' 2023-09-22T21:19:12,413 adding '_dev/cellposedev.py' 2023-09-22T21:19:12,414 adding '_dev/cellposeshapely.py' 2023-09-22T21:19:12,416 adding '_dev/check_metadata.py' 2023-09-22T21:19:12,417 adding '_dev/colicoords_cellldist_dev.py' 2023-09-22T21:19:12,418 adding '_dev/colicoords_ldist_dev.py' 2023-09-22T21:19:12,420 adding '_dev/database_dev.py' 2023-09-22T21:19:12,421 adding '_dev/edit_database_columns.py' 2023-09-22T21:19:12,423 adding '_dev/fits_dev.py' 2023-09-22T21:19:12,424 adding '_dev/fix_alison_missing_file_list.py' 2023-09-22T21:19:12,426 adding '_dev/generate_scanr_movie.py' 2023-09-22T21:19:12,429 adding '_dev/get_akseg_stats.py' 2023-09-22T21:19:12,430 adding '_dev/get_species_info.py' 2023-09-22T21:19:12,432 adding '_dev/luke__script.py' 2023-09-22T21:19:12,434 adding '_dev/matplotlib_Events.py' 2023-09-22T21:19:12,438 adding '_dev/move_AluGasketDFP.py' 2023-09-22T21:19:12,442 adding '_dev/move_conor_nim_dfp_data.py' 2023-09-22T21:19:12,446 adding '_dev/move_pillar_data.py' 2023-09-22T21:19:12,450 adding '_dev/move_pillar_zstack_data.py' 2023-09-22T21:19:12,456 adding '_dev/move_unlearning_files.py' 2023-09-22T21:19:12,458 adding '_dev/new_metadata2.pickle.py' 2023-09-22T21:19:12,459 adding '_dev/new_read_akseg_directory.py' 2023-09-22T21:19:12,461 adding '_dev/nim_dev.py' 2023-09-22T21:19:12,462 adding '_dev/omnipose_dev.py' 2023-09-22T21:19:12,464 adding '_dev/omnipose_midlines.py' 2023-09-22T21:19:12,465 adding '_dev/omnipose_train.py' 2023-09-22T21:19:12,468 adding '_dev/oufti_dilate.py' 2023-09-22T21:19:12,473 adding '_dev/oufti_dilate_with_midlines.py' 2023-09-22T21:19:12,476 adding '_dev/process_alex_datadump.py' 2023-09-22T21:19:12,480 adding '_dev/process_alex_datadump_clinical.py' 2023-09-22T21:19:12,484 adding '_dev/process_conor_datadump.py' 2023-09-22T21:19:12,487 adding '_dev/process_gramstain_datadump.py' 2023-09-22T21:19:12,488 adding '_dev/read_non_tif.py' 2023-09-22T21:19:12,490 adding '_dev/rebuild_usermeta.py' 2023-09-22T21:19:12,492 adding '_dev/rebuild_usermeta_2.py' 2023-09-22T21:19:12,493 adding '_dev/recreate_user_metadata.py' 2023-09-22T21:19:12,496 adding '_dev/sort_midlines.py' 2023-09-22T21:19:12,498 adding '_dev/stelios_stats.py' 2023-09-22T21:19:12,499 adding '_dev/tile_meta_check.py' 2023-09-22T21:19:12,500 adding '_dev/tiler_dev.py' 2023-09-22T21:19:12,501 adding '_dev/updade_akseg_metadata.py' 2023-09-22T21:19:12,502 adding '_dev/update_img_metadata.py' 2023-09-22T21:19:12,504 adding '_dev/video_iamges.py' 2023-09-22T21:19:12,506 adding '_dev/zooniverse.py' 2023-09-22T21:19:12,507 adding '_dev/zooniverse_move.py' 2023-09-22T21:19:12,508 adding '_dev/zooniverse_move_titrations.py' 2023-09-22T21:19:12,512 adding '_dev/zooniverse_titration_upload.py' 2023-09-22T21:19:12,514 adding '_dev/zooniverse_titrations.py' 2023-09-22T21:19:12,517 adding '_dev/zooniverse_upload.py' 2023-09-22T21:19:12,519 adding 'napari_bacseg/__init__.py' 2023-09-22T21:19:12,527 adding 'napari_bacseg/_utils.py' 2023-09-22T21:19:12,530 adding 'napari_bacseg/_utils_cellpose.py' 2023-09-22T21:19:12,532 adding 'napari_bacseg/_utils_colicoords.py' 2023-09-22T21:19:12,534 adding 'napari_bacseg/_utils_database.py' 2023-09-22T21:19:12,539 adding 'napari_bacseg/_utils_database_IO.py' 2023-09-22T21:19:12,540 adding 'napari_bacseg/_utils_imagej.py' 2023-09-22T21:19:12,544 adding 'napari_bacseg/_utils_interface_events.py' 2023-09-22T21:19:12,547 adding 'napari_bacseg/_utils_json.py' 2023-09-22T21:19:12,551 adding 'napari_bacseg/_utils_oufti.py' 2023-09-22T21:19:12,553 adding 'napari_bacseg/_utils_refine.py' 2023-09-22T21:19:12,556 adding 'napari_bacseg/_utils_statistics.py' 2023-09-22T21:19:12,557 adding 'napari_bacseg/_utils_tiler.py' 2023-09-22T21:19:12,558 adding 'napari_bacseg/_version.py' 2023-09-22T21:19:12,565 adding 'napari_bacseg/_widget.py' 2023-09-22T21:19:12,575 adding 'napari_bacseg/bacseg_ui.py' 2023-09-22T21:19:12,582 adding 'napari_bacseg/bacseg_ui.ui' 2023-09-22T21:19:12,585 adding 'napari_bacseg/gapseq_ui.py' 2023-09-22T21:19:12,586 adding 'napari_bacseg/napari.yaml' 2023-09-22T21:19:12,587 adding 'napari_bacseg/napari_ui.py' 2023-09-22T21:19:12,588 adding 'napari_bacseg/_tests/__init__.py' 2023-09-22T21:19:12,591 adding 'napari_bacseg/_tests/test_bacseg.py' 2023-09-22T21:19:12,593 adding 'napari_bacseg/_tests/test_widget.py' 2023-09-22T21:19:12,595 adding 'napari_bacseg-1.0.4.dist-info/LICENSE' 2023-09-22T21:19:12,596 adding 'napari_bacseg-1.0.4.dist-info/METADATA' 2023-09-22T21:19:12,597 adding 'napari_bacseg-1.0.4.dist-info/WHEEL' 2023-09-22T21:19:12,598 adding 'napari_bacseg-1.0.4.dist-info/entry_points.txt' 2023-09-22T21:19:12,599 adding 'napari_bacseg-1.0.4.dist-info/top_level.txt' 2023-09-22T21:19:12,601 adding 'napari_bacseg-1.0.4.dist-info/RECORD' 2023-09-22T21:19:12,606 removing build/bdist.linux-armv7l/wheel 2023-09-22T21:19:12,750 Building wheel for napari-bacseg (pyproject.toml): finished with status 'done' 2023-09-22T21:19:12,763 Created wheel for napari-bacseg: filename=napari_bacseg-1.0.4-py3-none-any.whl size=283423 sha256=cf1bd0fa7236286ed508e141cb30769c1e9c1abff190a63729b05fa38d3b74f8 2023-09-22T21:19:12,765 Stored in directory: /tmp/pip-ephem-wheel-cache-2cb1dpk1/wheels/e8/b0/88/3541548c21747997088f7dcdf6ba657a28f949097f685f365d 2023-09-22T21:19:12,779 Successfully built napari-bacseg 2023-09-22T21:19:12,794 Removed build tracker: '/tmp/pip-build-tracker-vfdznrad'