2023-09-25T04:13:36,897 Created temporary directory: /tmp/pip-build-tracker-_qk0upx8 2023-09-25T04:13:36,898 Initialized build tracking at /tmp/pip-build-tracker-_qk0upx8 2023-09-25T04:13:36,899 Created build tracker: /tmp/pip-build-tracker-_qk0upx8 2023-09-25T04:13:36,899 Entered build tracker: /tmp/pip-build-tracker-_qk0upx8 2023-09-25T04:13:36,900 Created temporary directory: /tmp/pip-wheel-z8gdjydx 2023-09-25T04:13:36,903 Created temporary directory: /tmp/pip-ephem-wheel-cache-5bj_ybbo 2023-09-25T04:13:36,927 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-25T04:13:36,931 2 location(s) to search for versions of splam: 2023-09-25T04:13:36,931 * https://pypi.org/simple/splam/ 2023-09-25T04:13:36,931 * https://www.piwheels.org/simple/splam/ 2023-09-25T04:13:36,932 Fetching project page and analyzing links: https://pypi.org/simple/splam/ 2023-09-25T04:13:36,934 Getting page https://pypi.org/simple/splam/ 2023-09-25T04:13:36,935 Found index url https://pypi.org/simple/ 2023-09-25T04:13:37,079 Fetched page https://pypi.org/simple/splam/ as application/vnd.pypi.simple.v1+json 2023-09-25T04:13:37,089 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/57/2a/d68f86c46b3152c9072975cb1c8b3f2345e0f71cea763c0635ca8c5e0261/splam-0.2.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,090 Found link https://files.pythonhosted.org/packages/ba/e8/4cf0f802bf26fd6587829e3688109caef6d26e13d19ce003ac876212da15/splam-0.2.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.9 2023-09-25T04:13:37,090 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f0/97/c31f00ac8a786213c4a50dd993cd04e61af08766e9559f244fb9c3929178/splam-0.2.10-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,091 Found link https://files.pythonhosted.org/packages/72/d1/671663c98d0cfca3218b880633390493fcebf9972175a7c4d2752259f2ea/splam-0.2.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.10 2023-09-25T04:13:37,092 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/ad/36/84239a43f206dfbfe07c6e6f76ef8c54235439210640aeacc8cb20e24c2e/splam-0.2.11-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,093 Found link https://files.pythonhosted.org/packages/c7/b3/96a175c203358d735694d7d5fd9261ef8683af968e14e473e823d159cee1/splam-0.2.11.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.11 2023-09-25T04:13:37,094 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/a5/f5/e15307ccb65ec9c225b7f1af65ee2c8880ba8eb049d386f4c9da459b2e1e/splam-0.2.12-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,095 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ba/88/6cac004352d4aa92aabdfd31f9b96919f8044db486185d3fd3c924583bc8/splam-0.2.12-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,096 Found link https://files.pythonhosted.org/packages/32/fa/a9795e9df88e8ea6c6788ae171702d5f9d8ce2c3472408ab0784f08a7b91/splam-0.2.12.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.12 2023-09-25T04:13:37,097 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/59/88/fefee12f8e44d6879a0970d37b42fc4dc54010f78b1ee91f6db366c1f125/splam-0.2.13-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,098 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/64/13/d601e5e99b31891d95bc0a6201367dab38f12faaadcb6aedbee7725dca71/splam-0.2.13-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,099 Found link https://files.pythonhosted.org/packages/cf/fb/2e5425fcdb2e5fd7ff963b174b1582816154fd0373bbc96edf4e851d272d/splam-0.2.13.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.13 2023-09-25T04:13:37,100 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/da/65/a129eabb1d673da72f1d7dfd3495c01c89da78569b7f2dba2c746a0c0f29/splam-0.2.14-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,100 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/79/2fdaa68664126c8c71bac526b41e1e35e4195879170c8129a8d482f3ae7b/splam-0.2.14-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,101 Found link https://files.pythonhosted.org/packages/9b/3f/d7dd2411528494ed5062665c3b5d5d7d8422fd11fa181d5fc01ea67d7dbf/splam-0.2.14.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.14 2023-09-25T04:13:37,102 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f4/9a/e7d1f5f16d77888ac5d0935e180fa2210e875ff487909519d6871e1301da/splam-0.2.15-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,103 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/40/b6/eda61824794c736e52c09353dfbbd70eea4d0f0ab31896f3688d269ab64b/splam-0.2.15-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,104 Found link https://files.pythonhosted.org/packages/29/d0/5e9ef93e49636308cb56b70a06c8932321cb60a4aae678d8bb1d213b52b5/splam-0.2.15.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.15 2023-09-25T04:13:37,104 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e5/17/caa4b05a6370f2d197ec174fe1968f63acc357db5923efca0860b3a5e141/splam-0.2.16-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,105 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fe/a5/d90a02293e34acf5515a8f435ae90afeb823336d6232a7bedf01436a00f9/splam-0.2.17-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,106 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ef/af/7db5183d8c36a250bb4547c58610624b4d1067ea0eb119addc8986ce6ec1/splam-0.2.17-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,107 Found link https://files.pythonhosted.org/packages/26/3a/0e89dd56f9617853061d7c4ed6a220a414a01bba9f0005e54da52a1ad22e/splam-0.2.17.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.17 2023-09-25T04:13:37,107 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/bd/50/ae02dcd9e7c53df59acc9ad83ac389a886e55254cd6953614d43f0eaac60/splam-0.3.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,108 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/78/0b/8b0b45b16922007f88c9b81357cde8b84f9ea45327104b00724024e722ec/splam-0.3.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,109 Found link https://files.pythonhosted.org/packages/e5/c7/4bf13e849aefc7cfdd94f142e6267e4937c61d7fb9fbfe1119953f6a5e72/splam-0.3.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.3.0 2023-09-25T04:13:37,110 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/55/d8079e937d1f568ac9358237871b9d4d6d28abf1e8e8ec2b8073db7b166a/splam-0.3.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,110 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6d/9f/5e7c396bd04da9866f89f51574bd3fec1e691b279116e4d4de92b75b6538/splam-1.0.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,111 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/56/ae/c9e443ec09db88b2b2aaa18ebc6b12751b321d731ce21964ee188067bb0f/splam-1.0.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,112 Found link https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.0 2023-09-25T04:13:37,113 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/43/45/27c64605655d3127bf6155bc060f98fb565e631553e4f0e0a53d3922ebf3/splam-1.0.1-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,113 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/4d/0b5427df4d5d74ba5a98e28805b45fee4b15d2cad1e9aa91069306c29da7/splam-1.0.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,114 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/da/e1/11ee65eb50a2f628f92249d84cd72eddbc1386afbc82c7410fceb627d995/splam-1.0.1-py3.9-linux-x86_64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,115 Found link https://files.pythonhosted.org/packages/ad/3c/5a2fcc44ca9afa6bc1cb4fe6a30ba6495f9c1359c6b610536cb6c7998ca1/splam-1.0.1.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.1 2023-09-25T04:13:37,115 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6a/e7/e7827b0d637f018ef8d18ea969985ce37ffa520fd1bf6d0e8d43d72b749e/splam-1.0.2-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,116 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f2/ba/94da0985b6db88ba663b4e56a395d74d04283a79d0fdf476763251f5679f/splam-1.0.2-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,117 Found link https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.2 2023-09-25T04:13:37,118 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/30/c9/23c10c8ee217996cc58e6f16ffc732657d1cb3011f7cbc41ebb51927bbbb/splam-1.0.3-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,119 Found link https://files.pythonhosted.org/packages/b3/80/1ff08f5e516c2ce233a75e61e8ce3dacc34b00bd2cae4fae0d01b0d758e9/splam-1.0.3.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.3 2023-09-25T04:13:37,119 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/70/bd/3aacba5a589a5a8d4688781f1376a822b1df05526355738a85f10a6f0c86/splam-1.0.4-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,120 Found link https://files.pythonhosted.org/packages/b3/ef/1c49f24a396880a7ac6773041c067d1418ca533df5018de37f1fb49f512a/splam-1.0.4.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.4 2023-09-25T04:13:37,121 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/54/7e/ce14252ed5cbc26ad69ffe8ec6909d91f2bed9f97749fb5ba0f43a935479/splam-1.0.5-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,122 Found link https://files.pythonhosted.org/packages/5f/dd/ac054961585d4e5d71c889e8840dc096a847ac38b04295f38dbe524718e5/splam-1.0.5.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.5 2023-09-25T04:13:37,123 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f7/1e/02d35d67ba3f32f629f40824705e8ef82b6a80914fef3ffa59bcea67c965/splam-1.0.6-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,124 Found link https://files.pythonhosted.org/packages/b2/7d/e8f8b51f071b0bc4e2a1a0cc31db50c9acecb68271cd5bd5e113c7442fed/splam-1.0.6.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.6 2023-09-25T04:13:37,125 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/1d/57/3fbf056633d3332ab938f761553161346599e27c5f5c66f605c08b4fb2b3/splam-1.0.7-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,125 Found link https://files.pythonhosted.org/packages/a5/b6/ffa6c7c753ce7d9989d0e3adcb5310ecf29429dce73ffe51f2b63434c9fc/splam-1.0.7.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.7 2023-09-25T04:13:37,126 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/35/fa/76bf21536e4f60a1caae0132889ab74457d9c75a9476c3d0ec7b578870af/splam-1.0.8-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,127 Found link https://files.pythonhosted.org/packages/a5/ad/6d3495d79895726b6df06f3cd667006e5316fa3235e6919b841057f6e666/splam-1.0.8.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.8 2023-09-25T04:13:37,127 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fc/24/c13538db2c354993494537d33e4138e39d65e83f947f55d6f9d599e12a63/splam-1.0.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,128 Found link https://files.pythonhosted.org/packages/4d/2c/303bafdffb18df8357ea5c7f2bc00f9e4afd9667b9f10b411091c3adc293/splam-1.0.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.9 2023-09-25T04:13:37,129 Fetching project page and analyzing links: https://www.piwheels.org/simple/splam/ 2023-09-25T04:13:37,130 Getting page https://www.piwheels.org/simple/splam/ 2023-09-25T04:13:37,132 Found index url https://www.piwheels.org/simple/ 2023-09-25T04:13:37,305 Fetched page https://www.piwheels.org/simple/splam/ as text/html 2023-09-25T04:13:37,316 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=7453657a38dcf0d7c2daaf93faf6a2938e28d036a3910105918ccff02dc54ca0 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,317 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=7453657a38dcf0d7c2daaf93faf6a2938e28d036a3910105918ccff02dc54ca0 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,318 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=c708c1c8ebbbb979a2a34a938458ac9a9555c23555f3385e0dd5b014a62f7c27 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,318 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=c708c1c8ebbbb979a2a34a938458ac9a9555c23555f3385e0dd5b014a62f7c27 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,319 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=dfd90ff647e7d082d2fc0c7fb31267ff57904b1f695afa56a45f1edfbe66dd36 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,320 Skipping link: No binaries permitted for splam: 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https://www.piwheels.org/simple/splam/splam-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=1df2348f054c2c94911b9f0f12cb53ffd0d73bbb7a08e64ea0c6783ceee0aff8 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,323 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=a8181a29dd75196ac29a057a71ae8aa567d3180e65dbefd5f00ffc44d6ceaabb (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,324 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=a8181a29dd75196ac29a057a71ae8aa567d3180e65dbefd5f00ffc44d6ceaabb (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,324 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=db7f7a90b02b4b219de50c195ee1ca9b24be11aa7f75c3972daa508e5af03ed7 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,325 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=db7f7a90b02b4b219de50c195ee1ca9b24be11aa7f75c3972daa508e5af03ed7 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,325 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp39-cp39-linux_armv7l.whl#sha256=c3a1b0ed2154e6f57b99c5dc2f09741faf5870038b8f86b488481cbc1cea6038 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,326 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp39-cp39-linux_armv6l.whl#sha256=c3a1b0ed2154e6f57b99c5dc2f09741faf5870038b8f86b488481cbc1cea6038 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,327 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp37-cp37m-linux_armv7l.whl#sha256=e995d4cf8f5f1d21c7acb05a431d0a13318d1dfb4fff327949db624e7b3d4406 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,327 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp37-cp37m-linux_armv6l.whl#sha256=e995d4cf8f5f1d21c7acb05a431d0a13318d1dfb4fff327949db624e7b3d4406 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,328 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp39-cp39-linux_armv7l.whl#sha256=61b2ad768b658cf35de2ec1cadc48174bba190e551c2f6e110cef152a0538d0f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,329 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp39-cp39-linux_armv6l.whl#sha256=61b2ad768b658cf35de2ec1cadc48174bba190e551c2f6e110cef152a0538d0f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,329 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp37-cp37m-linux_armv7l.whl#sha256=0a4fa9a067616033f881d9c22e1276e29cc4428f1241db0d262c13609379e2cf (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,330 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp37-cp37m-linux_armv6l.whl#sha256=0a4fa9a067616033f881d9c22e1276e29cc4428f1241db0d262c13609379e2cf (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,330 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv7l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,330 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv6l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,331 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp37-cp37m-linux_armv7l.whl#sha256=198f24795b97dfeeb87bfd8760ef5894be763c7c872f489ea0c4292c781067b6 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,331 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp37-cp37m-linux_armv6l.whl#sha256=198f24795b97dfeeb87bfd8760ef5894be763c7c872f489ea0c4292c781067b6 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,332 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv7l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,333 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv6l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,333 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv7l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,334 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv6l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,334 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv7l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,335 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv6l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,336 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv7l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,336 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv6l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,337 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv7l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,337 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv6l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,338 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv7l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,338 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv6l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-25T04:13:37,339 Skipping link: not a file: https://www.piwheels.org/simple/splam/ 2023-09-25T04:13:37,339 Skipping link: not a file: https://pypi.org/simple/splam/ 2023-09-25T04:13:37,360 Given no hashes to check 1 links for project 'splam': discarding no candidates 2023-09-25T04:13:37,378 Collecting splam==0.2.13 2023-09-25T04:13:37,380 Created temporary directory: /tmp/pip-unpack-yixkthi3 2023-09-25T04:13:37,519 Downloading splam-0.2.13.tar.gz (40.5 MB) 2023-09-25T04:13:45,031 Added splam==0.2.13 from https://files.pythonhosted.org/packages/cf/fb/2e5425fcdb2e5fd7ff963b174b1582816154fd0373bbc96edf4e851d272d/splam-0.2.13.tar.gz to build tracker '/tmp/pip-build-tracker-_qk0upx8' 2023-09-25T04:13:45,033 Running setup.py (path:/tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/setup.py) egg_info for package splam 2023-09-25T04:13:45,034 Created temporary directory: /tmp/pip-pip-egg-info-cu9pl74b 2023-09-25T04:13:45,034 Preparing metadata (setup.py): started 2023-09-25T04:13:45,036 Running command python setup.py egg_info 2023-09-25T04:13:46,061 running egg_info 2023-09-25T04:13:46,062 creating /tmp/pip-pip-egg-info-cu9pl74b/splam.egg-info 2023-09-25T04:13:46,086 writing /tmp/pip-pip-egg-info-cu9pl74b/splam.egg-info/PKG-INFO 2023-09-25T04:13:46,090 writing dependency_links to /tmp/pip-pip-egg-info-cu9pl74b/splam.egg-info/dependency_links.txt 2023-09-25T04:13:46,092 writing entry points to /tmp/pip-pip-egg-info-cu9pl74b/splam.egg-info/entry_points.txt 2023-09-25T04:13:46,094 writing requirements to /tmp/pip-pip-egg-info-cu9pl74b/splam.egg-info/requires.txt 2023-09-25T04:13:46,095 writing top-level names to /tmp/pip-pip-egg-info-cu9pl74b/splam.egg-info/top_level.txt 2023-09-25T04:13:46,096 writing manifest file '/tmp/pip-pip-egg-info-cu9pl74b/splam.egg-info/SOURCES.txt' 2023-09-25T04:13:46,174 reading manifest file '/tmp/pip-pip-egg-info-cu9pl74b/splam.egg-info/SOURCES.txt' 2023-09-25T04:13:46,176 reading manifest template 'MANIFEST.in' 2023-09-25T04:13:46,369 adding license file 'LICENSE' 2023-09-25T04:13:46,403 writing manifest file '/tmp/pip-pip-egg-info-cu9pl74b/splam.egg-info/SOURCES.txt' 2023-09-25T04:13:46,512 Preparing metadata (setup.py): finished with status 'done' 2023-09-25T04:13:46,515 Source in /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a has version 0.2.13, which satisfies requirement splam==0.2.13 from https://files.pythonhosted.org/packages/cf/fb/2e5425fcdb2e5fd7ff963b174b1582816154fd0373bbc96edf4e851d272d/splam-0.2.13.tar.gz 2023-09-25T04:13:46,516 Removed splam==0.2.13 from https://files.pythonhosted.org/packages/cf/fb/2e5425fcdb2e5fd7ff963b174b1582816154fd0373bbc96edf4e851d272d/splam-0.2.13.tar.gz from build tracker '/tmp/pip-build-tracker-_qk0upx8' 2023-09-25T04:13:46,521 Created temporary directory: /tmp/pip-unpack-1jumhkuk 2023-09-25T04:13:46,522 Created temporary directory: /tmp/pip-unpack-nw7a1kej 2023-09-25T04:13:46,531 Building wheels for collected packages: splam 2023-09-25T04:13:46,535 Created temporary directory: /tmp/pip-wheel-zfrln8a9 2023-09-25T04:13:46,535 Building wheel for splam (setup.py): started 2023-09-25T04:13:46,536 Destination directory: /tmp/pip-wheel-zfrln8a9 2023-09-25T04:13:46,537 Running command python setup.py bdist_wheel 2023-09-25T04:13:47,523 running bdist_wheel 2023-09-25T04:13:47,595 running build 2023-09-25T04:13:47,596 running build_py 2023-09-25T04:13:47,623 creating build 2023-09-25T04:13:47,623 creating build/lib.linux-armv7l-cpython-311 2023-09-25T04:13:47,624 creating build/lib.linux-armv7l-cpython-311/splam 2023-09-25T04:13:47,625 copying splam/prediction.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-25T04:13:47,628 copying splam/__init__.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-25T04:13:47,629 copying splam/test.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-25T04:13:47,631 copying splam/helper.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-25T04:13:47,633 copying splam/extract_gff.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-25T04:13:47,635 copying splam/parse.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-25T04:13:47,637 copying splam/config.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-25T04:13:47,638 copying splam/splam.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-25T04:13:47,641 copying splam/chr_size.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-25T04:13:47,644 running build_ext 2023-09-25T04:13:47,973 -- The C compiler identification is GNU 12.2.0 2023-09-25T04:13:48,403 -- The CXX compiler identification is GNU 12.2.0 2023-09-25T04:13:48,492 -- Detecting C compiler ABI info 2023-09-25T04:13:48,855 -- Detecting C compiler ABI info - done 2023-09-25T04:13:48,901 -- Check for working C compiler: /usr/bin/cc - skipped 2023-09-25T04:13:48,902 -- Detecting C compile features 2023-09-25T04:13:48,905 -- Detecting C compile features - done 2023-09-25T04:13:48,925 -- Detecting CXX compiler ABI info 2023-09-25T04:13:49,375 -- Detecting CXX compiler ABI info - done 2023-09-25T04:13:49,423 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-09-25T04:13:49,425 -- Detecting CXX compile features 2023-09-25T04:13:49,428 -- Detecting CXX compile features - done 2023-09-25T04:13:49,453 -- pybind11 v2.11.0 dev1 2023-09-25T04:13:49,531 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.6") 2023-09-25T04:13:49,613 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.11.so 2023-09-25T04:13:49,622 -- Performing Test HAS_FLTO 2023-09-25T04:13:50,250 -- Performing Test HAS_FLTO - Success 2023-09-25T04:13:50,301 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 2023-09-25T04:13:50,302 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/htslib 2023-09-25T04:13:50,302 LIBRARY_OUTPUT_DIRECTORY: 2023-09-25T04:13:50,387 -- Configuring done 2023-09-25T04:13:50,474 -- Generating done 2023-09-25T04:13:50,488 -- Build files have been written to: /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/build/temp.linux-armv7l-cpython-311/splam_extract 2023-09-25T04:13:50,732 [ 2%] Creating directories for 'htslib' 2023-09-25T04:13:50,860 [ 5%] No download step for 'htslib' 2023-09-25T04:13:51,022 [ 8%] No update step for 'htslib' 2023-09-25T04:13:51,185 [ 11%] No patch step for 'htslib' 2023-09-25T04:13:51,344 [ 13%] Performing configure step for 'htslib' 2023-09-25T04:13:57,405 checking for gcc... gcc 2023-09-25T04:13:57,679 checking whether the C compiler works... yes 2023-09-25T04:13:57,680 checking for C compiler default output file name... a.out 2023-09-25T04:13:57,864 checking for suffix of executables... 2023-09-25T04:13:58,060 checking whether we are cross compiling... no 2023-09-25T04:13:58,142 checking for suffix of object files... o 2023-09-25T04:13:58,215 checking whether the compiler supports GNU C... yes 2023-09-25T04:13:58,288 checking whether gcc accepts -g... yes 2023-09-25T04:13:58,450 checking for gcc option to enable C11 features... none needed 2023-09-25T04:13:58,453 checking for ranlib... ranlib 2023-09-25T04:13:58,461 checking for grep that handles long lines and -e... /usr/bin/grep 2023-09-25T04:13:58,535 checking for C compiler warning flags... -Wall 2023-09-25T04:13:58,737 checking for gcc options needed to detect all undeclared functions... none needed 2023-09-25T04:13:58,825 checking for stdio.h... yes 2023-09-25T04:13:59,149 checking for stdlib.h... yes 2023-09-25T04:13:59,266 checking for string.h... yes 2023-09-25T04:13:59,385 checking for inttypes.h... yes 2023-09-25T04:13:59,534 checking for stdint.h... yes 2023-09-25T04:13:59,653 checking for strings.h... yes 2023-09-25T04:13:59,775 checking for sys/stat.h... yes 2023-09-25T04:13:59,900 checking for sys/types.h... yes 2023-09-25T04:14:00,265 checking for unistd.h... yes 2023-09-25T04:14:00,472 checking for sys/param.h... yes 2023-09-25T04:14:00,645 checking whether _XOPEN_SOURCE is declared... no 2023-09-25T04:14:00,819 checking C compiler flags needed for ssse3... none 2023-09-25T04:14:00,992 checking C compiler flags needed for popcnt... none 2023-09-25T04:14:01,183 checking C compiler flags needed for sse4.1... none 2023-09-25T04:14:01,427 checking C compiler flags needed for avx2... none 2023-09-25T04:14:01,604 checking C compiler flags needed for avx512f... none 2023-09-25T04:14:01,607 checking for pkg-config... /usr/bin/pkg-config 2023-09-25T04:14:01,614 checking pkg-config is at least version 0.9.0... yes 2023-09-25T04:14:01,617 checking for special C compiler options needed for large files... no 2023-09-25T04:14:01,796 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-09-25T04:14:01,807 checking shared library type for unknown-Linux... plain .so 2023-09-25T04:14:01,982 checking whether the linker supports versioned symbols... yes 2023-09-25T04:14:02,161 checking whether the compiler accepts -fvisibility=hidden... yes 2023-09-25T04:14:02,459 checking build system type... armv7l-unknown-linux-gnueabihf 2023-09-25T04:14:02,460 checking host system type... armv7l-unknown-linux-gnueabihf 2023-09-25T04:14:02,644 checking for getpagesize... yes 2023-09-25T04:14:02,974 checking for working mmap... yes 2023-09-25T04:14:03,190 checking for gmtime_r... yes 2023-09-25T04:14:03,375 checking for fsync... yes 2023-09-25T04:14:03,564 checking for drand48... yes 2023-09-25T04:14:03,766 checking for srand48_deterministic... no 2023-09-25T04:14:03,959 checking whether fdatasync is declared... yes 2023-09-25T04:14:04,143 checking for fdatasync... yes 2023-09-25T04:14:04,543 checking for library containing log... -lm 2023-09-25T04:14:04,645 checking for zlib.h... yes 2023-09-25T04:14:04,863 checking for inflate in -lz... yes 2023-09-25T04:14:05,045 checking for library containing recv... none required 2023-09-25T04:14:05,132 checking for bzlib.h... yes 2023-09-25T04:14:05,313 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-09-25T04:14:05,415 checking whether htscodecs files are present... yes 2023-09-25T04:14:05,417 configure: WARNING: GCS support not enabled: requires libcurl support 2023-09-25T04:14:05,417 configure: WARNING: S3 support not enabled: requires libcurl support 2023-09-25T04:14:05,637 checking for library containing regcomp... none required 2023-09-25T04:14:05,715 configure: creating ./config.status 2023-09-25T04:14:06,023 config.status: creating config.mk 2023-09-25T04:14:06,062 config.status: creating htslib.pc.tmp 2023-09-25T04:14:06,105 config.status: creating config.h 2023-09-25T04:14:06,136 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-09-25T04:14:06,309 [ 16%] Performing build step for 'htslib' 2023-09-25T04:14:22,806 Updating htscodecs/htscodecs/version.h : #define HTSCODECS_VERSION_TEXT "1.5.0-5-g109f069" 2023-09-25T04:19:10,517 [ 19%] No install step for 'htslib' 2023-09-25T04:19:10,637 [ 22%] Completed 'htslib' 2023-09-25T04:19:10,798 [ 22%] Built target htslib 2023-09-25T04:19:10,901 [ 25%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-09-25T04:19:23,115 [ 27%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-09-25T04:19:27,734 [ 30%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-09-25T04:19:30,949 [ 33%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-09-25T04:19:35,968 [ 36%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-09-25T04:19:41,109 [ 38%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-09-25T04:19:43,227 [ 41%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-09-25T04:19:44,575 [ 44%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-09-25T04:19:45,563 [ 47%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-09-25T04:19:46,753 [ 50%] Linking CXX shared module /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so 2023-09-25T04:19:48,098 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-25T04:19:48,099 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-25T04:19:55,360 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-09-25T04:19:55,362 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GVec.hh:107:24: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-09-25T04:19:55,363 107 | fArray=new OBJ[NewCapacity]; 2023-09-25T04:19:55,363 | ^ 2023-09-25T04:19:55,364 /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-09-25T04:19:55,364 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-09-25T04:19:55,365 | ^ 2023-09-25T04:19:58,696 In member function ‘Push’, 2023-09-25T04:19:58,697 inlined from ‘fgetline’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.cpp:530:11, 2023-09-25T04:19:58,697 inlined from ‘start’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/tmerge.cpp:329:28, 2023-09-25T04:19:58,698 inlined from ‘splam_extract’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_extract.cpp:175:37: 2023-09-25T04:19:58,698 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-25T04:19:58,699 564 | GDynArray_ADD(item); 2023-09-25T04:19:58,699 | ^ 2023-09-25T04:19:58,700 In function ‘GRealloc’, 2023-09-25T04:19:58,701 inlined from ‘Clear’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:633:6, 2023-09-25T04:19:58,701 inlined from ‘growTo’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:577:28, 2023-09-25T04:19:58,702 inlined from ‘Grow’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:544:12, 2023-09-25T04:19:58,702 inlined from ‘Push’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:564:6, 2023-09-25T04:19:58,703 inlined from ‘fgetline’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.cpp:530:11, 2023-09-25T04:19:58,703 inlined from ‘start’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/tmerge.cpp:329:28, 2023-09-25T04:19:58,704 inlined from ‘splam_extract’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_extract.cpp:175:37: 2023-09-25T04:19:58,704 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:280:21: note: at offset -1 into destination object of size 16 allocated by ‘realloc’ 2023-09-25T04:19:58,705 280 | void *p=realloc(*ptr,size); 2023-09-25T04:19:58,705 | ^ 2023-09-25T04:19:58,706 In member function ‘Push’, 2023-09-25T04:19:58,706 inlined from ‘fgetline’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.cpp:530:11, 2023-09-25T04:19:58,706 inlined from ‘start’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/tmerge.cpp:329:28, 2023-09-25T04:19:58,707 inlined from ‘splam_extract’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_extract.cpp:175:37: 2023-09-25T04:19:58,708 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-25T04:19:58,708 564 | GDynArray_ADD(item); 2023-09-25T04:19:58,709 | ^ 2023-09-25T04:19:58,709 In function ‘GRealloc’, 2023-09-25T04:19:58,710 inlined from ‘Clear’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:633:6, 2023-09-25T04:19:58,711 inlined from ‘growTo’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:577:28, 2023-09-25T04:19:58,711 inlined from ‘Grow’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:544:12, 2023-09-25T04:19:58,712 inlined from ‘Push’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:564:6, 2023-09-25T04:19:58,712 inlined from ‘fgetline’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.cpp:530:11, 2023-09-25T04:19:58,713 inlined from ‘start’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/tmerge.cpp:329:28, 2023-09-25T04:19:58,713 inlined from ‘splam_extract’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_extract.cpp:175:37: 2023-09-25T04:19:58,714 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:272:20: note: at offset -1 into destination object of size 16 allocated by ‘malloc’ 2023-09-25T04:19:58,715 272 | void *p=malloc(size); 2023-09-25T04:19:58,715 | ^ 2023-09-25T04:20:10,493 [ 50%] Built target splam_extract 2023-09-25T04:20:10,598 [ 52%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-09-25T04:20:16,822 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-09-25T04:20:16,822 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:319:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,823 319 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-25T04:20:16,823 | ^~~~~~~~~~ 2023-09-25T04:20:16,824 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:319:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,824 319 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-25T04:20:16,825 | ^~~~~~ 2023-09-25T04:20:16,825 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:319:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,826 319 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-25T04:20:16,826 | ^~~~ 2023-09-25T04:20:16,827 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:319:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,827 319 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-25T04:20:16,828 | ^~~~ 2023-09-25T04:20:16,829 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:329:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,830 329 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-25T04:20:16,830 | ^~~~~~~~~~ 2023-09-25T04:20:16,831 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:329:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,832 329 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-25T04:20:16,832 | ^~~~~~ 2023-09-25T04:20:16,833 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:329:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,833 329 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-25T04:20:16,834 | ^~~~ 2023-09-25T04:20:16,835 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:329:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,835 329 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-25T04:20:16,836 | ^~~~ 2023-09-25T04:20:16,837 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:336:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,837 336 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-25T04:20:16,838 | ^~~~~~~~~~ 2023-09-25T04:20:16,838 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:336:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,839 336 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-25T04:20:16,839 | ^~~~~~~ 2023-09-25T04:20:16,840 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:336:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,840 336 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-25T04:20:16,841 | ^~~~ 2023-09-25T04:20:16,841 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:336:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,842 336 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-25T04:20:16,842 | ^~~~ 2023-09-25T04:20:16,843 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:336:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,844 336 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-25T04:20:16,844 | ^~~~ 2023-09-25T04:20:16,845 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:354:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,845 354 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-25T04:20:16,846 | ^~~~~~~~~~ 2023-09-25T04:20:16,847 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:354:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,847 354 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-25T04:20:16,848 | ^~~~~~~ 2023-09-25T04:20:16,849 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:354:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,850 354 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-25T04:20:16,850 | ^~~~ 2023-09-25T04:20:16,851 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:354:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,851 354 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-25T04:20:16,852 | ^~~~ 2023-09-25T04:20:16,852 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:354:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:20:16,853 354 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-25T04:20:16,853 | ^~~~ 2023-09-25T04:20:22,901 [ 55%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-09-25T04:20:32,500 [ 58%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-09-25T04:20:33,283 [ 61%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-09-25T04:20:33,887 [ 63%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-09-25T04:20:34,226 [ 66%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-09-25T04:20:36,353 [ 69%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-09-25T04:20:39,587 [ 72%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-09-25T04:20:44,195 [ 75%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/predict.cpp.o 2023-09-25T04:20:49,551 [ 77%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-09-25T04:20:54,888 [ 80%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-09-25T04:20:59,759 [ 83%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-09-25T04:21:04,514 [ 86%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-09-25T04:21:08,185 [ 88%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-09-25T04:21:10,276 [ 91%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-09-25T04:21:11,627 [ 94%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-09-25T04:21:12,610 [ 97%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-09-25T04:21:13,803 [100%] Linking CXX shared module /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so 2023-09-25T04:21:14,826 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-25T04:21:14,827 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-25T04:21:36,128 [100%] Built target splam_clean 2023-09-25T04:21:36,517 -- The C compiler identification is GNU 12.2.0 2023-09-25T04:21:36,850 -- The CXX compiler identification is GNU 12.2.0 2023-09-25T04:21:36,902 -- Detecting C compiler ABI info 2023-09-25T04:21:37,273 -- Detecting C compiler ABI info - done 2023-09-25T04:21:37,333 -- Check for working C compiler: /usr/bin/cc - skipped 2023-09-25T04:21:37,335 -- Detecting C compile features 2023-09-25T04:21:37,338 -- Detecting C compile features - done 2023-09-25T04:21:37,368 -- Detecting CXX compiler ABI info 2023-09-25T04:21:37,799 -- Detecting CXX compiler ABI info - done 2023-09-25T04:21:37,847 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-09-25T04:21:37,849 -- Detecting CXX compile features 2023-09-25T04:21:37,852 -- Detecting CXX compile features - done 2023-09-25T04:21:37,878 -- pybind11 v2.11.0 dev1 2023-09-25T04:21:37,961 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.6") 2023-09-25T04:21:38,042 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.11.so 2023-09-25T04:21:38,051 -- Performing Test HAS_FLTO 2023-09-25T04:21:38,696 -- Performing Test HAS_FLTO - Success 2023-09-25T04:21:38,747 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 2023-09-25T04:21:38,747 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/htslib 2023-09-25T04:21:38,748 LIBRARY_OUTPUT_DIRECTORY: 2023-09-25T04:21:38,839 -- Configuring done 2023-09-25T04:21:38,950 -- Generating done 2023-09-25T04:21:38,970 -- Build files have been written to: /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/build/temp.linux-armv7l-cpython-311/splam_clean 2023-09-25T04:21:39,287 [ 2%] Creating directories for 'htslib' 2023-09-25T04:21:39,408 [ 5%] No download step for 'htslib' 2023-09-25T04:21:39,525 [ 8%] No update step for 'htslib' 2023-09-25T04:21:39,643 [ 11%] No patch step for 'htslib' 2023-09-25T04:21:39,759 [ 13%] Performing configure step for 'htslib' 2023-09-25T04:21:44,502 checking for gcc... gcc 2023-09-25T04:21:45,341 checking whether the C compiler works... yes 2023-09-25T04:21:45,341 checking for C compiler default output file name... a.out 2023-09-25T04:21:45,506 checking for suffix of executables... 2023-09-25T04:21:45,693 checking whether we are cross compiling... no 2023-09-25T04:21:45,776 checking for suffix of object files... o 2023-09-25T04:21:45,849 checking whether the compiler supports GNU C... yes 2023-09-25T04:21:45,922 checking whether gcc accepts -g... yes 2023-09-25T04:21:46,124 checking for gcc option to enable C11 features... none needed 2023-09-25T04:21:46,127 checking for ranlib... ranlib 2023-09-25T04:21:46,134 checking for grep that handles long lines and -e... /usr/bin/grep 2023-09-25T04:21:46,210 checking for C compiler warning flags... -Wall 2023-09-25T04:21:46,374 checking for gcc options needed to detect all undeclared functions... none needed 2023-09-25T04:21:46,461 checking for stdio.h... yes 2023-09-25T04:21:46,569 checking for stdlib.h... yes 2023-09-25T04:21:46,689 checking for string.h... yes 2023-09-25T04:21:46,821 checking for inttypes.h... yes 2023-09-25T04:21:46,994 checking for stdint.h... yes 2023-09-25T04:21:47,116 checking for strings.h... yes 2023-09-25T04:21:47,239 checking for sys/stat.h... yes 2023-09-25T04:21:47,362 checking for sys/types.h... yes 2023-09-25T04:21:47,496 checking for unistd.h... yes 2023-09-25T04:21:47,653 checking for sys/param.h... yes 2023-09-25T04:21:47,864 checking whether _XOPEN_SOURCE is declared... no 2023-09-25T04:21:48,037 checking C compiler flags needed for ssse3... none 2023-09-25T04:21:48,209 checking C compiler flags needed for popcnt... none 2023-09-25T04:21:48,382 checking C compiler flags needed for sse4.1... none 2023-09-25T04:21:48,571 checking C compiler flags needed for avx2... none 2023-09-25T04:21:48,754 checking C compiler flags needed for avx512f... none 2023-09-25T04:21:48,757 checking for pkg-config... /usr/bin/pkg-config 2023-09-25T04:21:48,762 checking pkg-config is at least version 0.9.0... yes 2023-09-25T04:21:48,765 checking for special C compiler options needed for large files... no 2023-09-25T04:21:49,153 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-09-25T04:21:49,166 checking shared library type for unknown-Linux... plain .so 2023-09-25T04:21:49,352 checking whether the linker supports versioned symbols... yes 2023-09-25T04:21:49,554 checking whether the compiler accepts -fvisibility=hidden... yes 2023-09-25T04:21:49,784 checking build system type... armv7l-unknown-linux-gnueabihf 2023-09-25T04:21:49,785 checking host system type... armv7l-unknown-linux-gnueabihf 2023-09-25T04:21:49,969 checking for getpagesize... yes 2023-09-25T04:21:50,330 checking for working mmap... yes 2023-09-25T04:21:50,517 checking for gmtime_r... yes 2023-09-25T04:21:50,703 checking for fsync... yes 2023-09-25T04:21:50,886 checking for drand48... yes 2023-09-25T04:21:51,119 checking for srand48_deterministic... no 2023-09-25T04:21:51,281 checking whether fdatasync is declared... yes 2023-09-25T04:21:51,466 checking for fdatasync... yes 2023-09-25T04:21:51,897 checking for library containing log... -lm 2023-09-25T04:21:51,997 checking for zlib.h... yes 2023-09-25T04:21:52,180 checking for inflate in -lz... yes 2023-09-25T04:21:52,363 checking for library containing recv... none required 2023-09-25T04:21:52,449 checking for bzlib.h... yes 2023-09-25T04:21:52,657 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-09-25T04:21:52,758 checking whether htscodecs files are present... yes 2023-09-25T04:21:52,759 configure: WARNING: GCS support not enabled: requires libcurl support 2023-09-25T04:21:52,760 configure: WARNING: S3 support not enabled: requires libcurl support 2023-09-25T04:21:52,946 checking for library containing regcomp... none required 2023-09-25T04:21:53,012 configure: creating ./config.status 2023-09-25T04:21:53,352 config.status: creating config.mk 2023-09-25T04:21:53,412 config.status: creating htslib.pc.tmp 2023-09-25T04:21:53,477 config.status: creating config.h 2023-09-25T04:21:53,504 config.status: config.h is unchanged 2023-09-25T04:21:53,512 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-09-25T04:21:53,757 [ 16%] Performing build step for 'htslib' 2023-09-25T04:21:54,246 [ 19%] No install step for 'htslib' 2023-09-25T04:21:54,365 [ 22%] Completed 'htslib' 2023-09-25T04:21:54,523 [ 22%] Built target htslib 2023-09-25T04:21:54,624 [ 25%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-09-25T04:22:06,819 [ 27%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-09-25T04:22:11,436 [ 30%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-09-25T04:22:14,677 [ 33%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-09-25T04:22:19,420 [ 36%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-09-25T04:22:23,092 [ 38%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-09-25T04:22:25,192 [ 41%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-09-25T04:22:26,584 [ 44%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-09-25T04:22:27,576 [ 47%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-09-25T04:22:29,422 [ 50%] Linking CXX shared module /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so 2023-09-25T04:22:30,707 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-25T04:22:30,707 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-25T04:22:37,900 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-09-25T04:22:37,901 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GVec.hh:107:24: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-09-25T04:22:37,902 107 | fArray=new OBJ[NewCapacity]; 2023-09-25T04:22:37,903 | ^ 2023-09-25T04:22:37,903 /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-09-25T04:22:37,904 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-09-25T04:22:37,904 | ^ 2023-09-25T04:22:41,219 In member function ‘Push’, 2023-09-25T04:22:41,219 inlined from ‘fgetline’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.cpp:530:11, 2023-09-25T04:22:41,220 inlined from ‘start’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/tmerge.cpp:329:28, 2023-09-25T04:22:41,220 inlined from ‘splam_extract’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_extract.cpp:175:37: 2023-09-25T04:22:41,221 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-25T04:22:41,221 564 | GDynArray_ADD(item); 2023-09-25T04:22:41,222 | ^ 2023-09-25T04:22:41,223 In function ‘GRealloc’, 2023-09-25T04:22:41,223 inlined from ‘Clear’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:633:6, 2023-09-25T04:22:41,224 inlined from ‘growTo’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:577:28, 2023-09-25T04:22:41,224 inlined from ‘Grow’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:544:12, 2023-09-25T04:22:41,225 inlined from ‘Push’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:564:6, 2023-09-25T04:22:41,226 inlined from ‘fgetline’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.cpp:530:11, 2023-09-25T04:22:41,226 inlined from ‘start’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/tmerge.cpp:329:28, 2023-09-25T04:22:41,227 inlined from ‘splam_extract’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_extract.cpp:175:37: 2023-09-25T04:22:41,228 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:280:21: note: at offset -1 into destination object of size 16 allocated by ‘realloc’ 2023-09-25T04:22:41,229 280 | void *p=realloc(*ptr,size); 2023-09-25T04:22:41,229 | ^ 2023-09-25T04:22:41,230 In member function ‘Push’, 2023-09-25T04:22:41,231 inlined from ‘fgetline’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.cpp:530:11, 2023-09-25T04:22:41,231 inlined from ‘start’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/tmerge.cpp:329:28, 2023-09-25T04:22:41,232 inlined from ‘splam_extract’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_extract.cpp:175:37: 2023-09-25T04:22:41,232 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-25T04:22:41,233 564 | GDynArray_ADD(item); 2023-09-25T04:22:41,234 | ^ 2023-09-25T04:22:41,234 In function ‘GRealloc’, 2023-09-25T04:22:41,235 inlined from ‘Clear’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:633:6, 2023-09-25T04:22:41,236 inlined from ‘growTo’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:577:28, 2023-09-25T04:22:41,236 inlined from ‘Grow’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:544:12, 2023-09-25T04:22:41,237 inlined from ‘Push’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:564:6, 2023-09-25T04:22:41,238 inlined from ‘fgetline’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.cpp:530:11, 2023-09-25T04:22:41,239 inlined from ‘start’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/tmerge.cpp:329:28, 2023-09-25T04:22:41,239 inlined from ‘splam_extract’ at /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_extract.cpp:175:37: 2023-09-25T04:22:41,240 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/include/gclib/GBase.h:272:20: note: at offset -1 into destination object of size 16 allocated by ‘malloc’ 2023-09-25T04:22:41,240 272 | void *p=malloc(size); 2023-09-25T04:22:41,241 | ^ 2023-09-25T04:22:54,162 [ 50%] Built target splam_extract 2023-09-25T04:22:54,273 [ 52%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-09-25T04:23:00,485 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-09-25T04:23:00,485 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:319:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,486 319 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-25T04:23:00,487 | ^~~~~~~~~~ 2023-09-25T04:23:00,487 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:319:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,488 319 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-25T04:23:00,489 | ^~~~~~ 2023-09-25T04:23:00,489 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:319:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,490 319 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-25T04:23:00,491 | ^~~~ 2023-09-25T04:23:00,491 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:319:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,492 319 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-25T04:23:00,493 | ^~~~ 2023-09-25T04:23:00,493 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:329:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,494 329 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-25T04:23:00,495 | ^~~~~~~~~~ 2023-09-25T04:23:00,495 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:329:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,496 329 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-25T04:23:00,497 | ^~~~~~ 2023-09-25T04:23:00,498 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:329:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,498 329 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-25T04:23:00,499 | ^~~~ 2023-09-25T04:23:00,499 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:329:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,500 329 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-25T04:23:00,500 | ^~~~ 2023-09-25T04:23:00,501 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:336:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,501 336 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-25T04:23:00,502 | ^~~~~~~~~~ 2023-09-25T04:23:00,503 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:336:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,504 336 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-25T04:23:00,504 | ^~~~~~~ 2023-09-25T04:23:00,505 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:336:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,506 336 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-25T04:23:00,506 | ^~~~ 2023-09-25T04:23:00,507 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:336:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,508 336 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-25T04:23:00,508 | ^~~~ 2023-09-25T04:23:00,509 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:336:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,522 336 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-25T04:23:00,559 | ^~~~ 2023-09-25T04:23:00,559 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:354:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,563 354 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-25T04:23:00,575 | ^~~~~~~~~~ 2023-09-25T04:23:00,583 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:354:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,584 354 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-25T04:23:00,591 | ^~~~~~~ 2023-09-25T04:23:00,591 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:354:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,592 354 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-25T04:23:00,593 | ^~~~ 2023-09-25T04:23:00,594 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:354:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,599 354 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-25T04:23:00,599 | ^~~~ 2023-09-25T04:23:00,606 /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/splam/module/splam_clean.cpp:354:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-25T04:23:00,607 354 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-25T04:23:00,608 | ^~~~ 2023-09-25T04:23:06,545 [ 55%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-09-25T04:23:16,092 [ 58%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-09-25T04:23:16,653 [ 61%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-09-25T04:23:17,240 [ 63%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-09-25T04:23:17,580 [ 66%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-09-25T04:23:19,715 [ 69%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-09-25T04:23:22,959 [ 72%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-09-25T04:23:27,556 [ 75%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/predict.cpp.o 2023-09-25T04:23:32,359 [ 77%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-09-25T04:23:37,718 [ 80%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-09-25T04:23:42,564 [ 83%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-09-25T04:23:47,319 [ 86%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-09-25T04:23:51,036 [ 88%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-09-25T04:23:53,153 [ 91%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-09-25T04:23:54,727 [ 94%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-09-25T04:23:55,711 [ 97%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-09-25T04:23:56,905 [100%] Linking CXX shared module /tmp/pip-wheel-z8gdjydx/splam_8ec0d659a303434bb6207924565a5f5a/build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so 2023-09-25T04:23:57,908 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-25T04:23:57,908 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-25T04:24:19,221 [100%] Built target splam_clean 2023-09-25T04:24:19,315 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-25T04:24:19,315 !! 2023-09-25T04:24:19,316 ******************************************************************************** 2023-09-25T04:24:19,317 Please avoid running ``setup.py`` directly. 2023-09-25T04:24:19,317 Instead, use pypa/build, pypa/installer or other 2023-09-25T04:24:19,318 standards-based tools. 2023-09-25T04:24:19,318 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-25T04:24:19,319 ******************************************************************************** 2023-09-25T04:24:19,320 !! 2023-09-25T04:24:19,321 self.initialize_options() 2023-09-25T04:24:19,339 installing to build/bdist.linux-armv7l/wheel 2023-09-25T04:24:19,340 running install 2023-09-25T04:24:19,364 running install_lib 2023-09-25T04:24:19,388 creating build/bdist.linux-armv7l 2023-09-25T04:24:19,389 creating build/bdist.linux-armv7l/wheel 2023-09-25T04:24:19,390 copying build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-09-25T04:24:19,397 creating build/bdist.linux-armv7l/wheel/splam 2023-09-25T04:24:19,398 copying build/lib.linux-armv7l-cpython-311/splam/prediction.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-25T04:24:19,401 copying build/lib.linux-armv7l-cpython-311/splam/__init__.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-25T04:24:19,403 copying build/lib.linux-armv7l-cpython-311/splam/test.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-25T04:24:19,405 copying build/lib.linux-armv7l-cpython-311/splam/helper.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-25T04:24:19,407 copying build/lib.linux-armv7l-cpython-311/splam/extract_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-25T04:24:19,409 copying build/lib.linux-armv7l-cpython-311/splam/parse.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-25T04:24:19,411 copying build/lib.linux-armv7l-cpython-311/splam/config.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-25T04:24:19,413 copying build/lib.linux-armv7l-cpython-311/splam/splam.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-25T04:24:19,415 copying build/lib.linux-armv7l-cpython-311/splam/chr_size.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-25T04:24:19,418 copying build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-09-25T04:24:19,431 running install_egg_info 2023-09-25T04:24:19,494 running egg_info 2023-09-25T04:24:19,521 writing splam.egg-info/PKG-INFO 2023-09-25T04:24:19,524 writing dependency_links to splam.egg-info/dependency_links.txt 2023-09-25T04:24:19,526 writing entry points to splam.egg-info/entry_points.txt 2023-09-25T04:24:19,527 writing requirements to splam.egg-info/requires.txt 2023-09-25T04:24:19,529 writing top-level names to splam.egg-info/top_level.txt 2023-09-25T04:24:19,557 reading manifest file 'splam.egg-info/SOURCES.txt' 2023-09-25T04:24:19,730 reading manifest template 'MANIFEST.in' 2023-09-25T04:24:19,978 adding license file 'LICENSE' 2023-09-25T04:24:20,033 writing manifest file 'splam.egg-info/SOURCES.txt' 2023-09-25T04:24:20,036 Copying splam.egg-info to build/bdist.linux-armv7l/wheel/splam-0.2.13-py3.11.egg-info 2023-09-25T04:24:20,049 running install_scripts 2023-09-25T04:24:20,102 creating build/bdist.linux-armv7l/wheel/splam-0.2.13.dist-info/WHEEL 2023-09-25T04:24:20,104 creating '/tmp/pip-wheel-zfrln8a9/splam-0.2.13-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-25T04:24:20,183 adding 'splam_clean.cpython-311-arm-linux-gnueabihf.so' 2023-09-25T04:24:20,237 adding 'splam_extract.cpython-311-arm-linux-gnueabihf.so' 2023-09-25T04:24:20,240 adding 'splam/__init__.py' 2023-09-25T04:24:20,244 adding 'splam/chr_size.py' 2023-09-25T04:24:20,245 adding 'splam/config.py' 2023-09-25T04:24:20,246 adding 'splam/extract_gff.py' 2023-09-25T04:24:20,248 adding 'splam/helper.py' 2023-09-25T04:24:20,250 adding 'splam/parse.py' 2023-09-25T04:24:20,252 adding 'splam/prediction.py' 2023-09-25T04:24:20,254 adding 'splam/splam.py' 2023-09-25T04:24:20,255 adding 'splam/test.py' 2023-09-25T04:24:20,257 adding 'splam-0.2.13.dist-info/LICENSE' 2023-09-25T04:24:20,258 adding 'splam-0.2.13.dist-info/METADATA' 2023-09-25T04:24:20,259 adding 'splam-0.2.13.dist-info/WHEEL' 2023-09-25T04:24:20,260 adding 'splam-0.2.13.dist-info/entry_points.txt' 2023-09-25T04:24:20,261 adding 'splam-0.2.13.dist-info/top_level.txt' 2023-09-25T04:24:20,262 adding 'splam-0.2.13.dist-info/RECORD' 2023-09-25T04:24:20,267 removing build/bdist.linux-armv7l/wheel 2023-09-25T04:24:20,384 Building wheel for splam (setup.py): finished with status 'done' 2023-09-25T04:24:20,391 Created wheel for splam: filename=splam-0.2.13-cp311-cp311-linux_armv7l.whl size=301080 sha256=3358137f046748462107e305dd9d042c880d1ac8e4b165f0ba3872db24bc2175 2023-09-25T04:24:20,392 Stored in directory: /tmp/pip-ephem-wheel-cache-5bj_ybbo/wheels/5f/60/b1/4673de655ec0b41a9380810453f49458f321fca59e78fce730 2023-09-25T04:24:20,402 Successfully built splam 2023-09-25T04:24:20,417 Removed build tracker: '/tmp/pip-build-tracker-_qk0upx8'