2023-09-25T16:22:05,672 Created temporary directory: /tmp/pip-build-tracker-o2s6pcgi 2023-09-25T16:22:05,673 Initialized build tracking at /tmp/pip-build-tracker-o2s6pcgi 2023-09-25T16:22:05,674 Created build tracker: /tmp/pip-build-tracker-o2s6pcgi 2023-09-25T16:22:05,674 Entered build tracker: /tmp/pip-build-tracker-o2s6pcgi 2023-09-25T16:22:05,675 Created temporary directory: /tmp/pip-wheel-trpj7r5s 2023-09-25T16:22:05,678 Created temporary directory: /tmp/pip-ephem-wheel-cache-4hwksdy4 2023-09-25T16:22:05,700 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-25T16:22:05,703 2 location(s) to search for versions of viennarna: 2023-09-25T16:22:05,703 * https://pypi.org/simple/viennarna/ 2023-09-25T16:22:05,703 * https://www.piwheels.org/simple/viennarna/ 2023-09-25T16:22:05,704 Fetching project page and analyzing links: https://pypi.org/simple/viennarna/ 2023-09-25T16:22:05,705 Getting page https://pypi.org/simple/viennarna/ 2023-09-25T16:22:05,706 Found index url https://pypi.org/simple/ 2023-09-25T16:22:05,924 Fetched page https://pypi.org/simple/viennarna/ as application/vnd.pypi.simple.v1+json 2023-09-25T16:22:05,935 Found link https://files.pythonhosted.org/packages/77/72/75bb8baeebb7112f80e8561a3e31edef5d108309900e6cc409d4ced943cf/ViennaRNA-2.5.0a5.tar.gz (from https://pypi.org/simple/viennarna/), version: 2.5.0a5 2023-09-25T16:22:05,936 Found link https://files.pythonhosted.org/packages/82/c0/576a5423bb28d496f75bedad46a8edeafaef439c2573d56d2340c525dc8e/ViennaRNA-2.6.2a0.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2a0 2023-09-25T16:22:05,937 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/56/d7/4be5f10eed2081a3bd54b8ba051159d3d05432eecd58c83b72f535b76e21/ViennaRNA-2.6.2-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,937 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/89/fa/1b4d9474cff058f4e23ce3dffc2c8cc6fa7aa980782f44324fbeeabb55f0/ViennaRNA-2.6.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,938 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/b2/9eeacfc00e825ca78aabc27ead72c32b2056e74d784846e66c80549f8bc3/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,938 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a5/f3/9c602f1c4e7cf2bb95c31bba8b4908f2ddf862204aceb999377b1e76a263/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,939 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b9/50/273d56b829109ec99f52a3250d5975969ea92f8a1d1fe569460a8505a067/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,940 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/4e/c3/d1d4388ce289b97970f762a68cfd7821971b80e2c2a56c3e7c091485c966/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,940 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/fa/c1/b794e68d98c1b7a204e4e5da625e9953f83a3c554d19689d9a1108a1d9fb/ViennaRNA-2.6.2-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,941 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/de/45/e9b08e19992bec9300ffb94cd49f7ea974912cee94de5d4dd0b10697d0d7/ViennaRNA-2.6.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,941 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/38/c8/71736f66a09668eaef822836989f72781dd8ae12f4d0303170445429889c/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,942 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/70/56/bf9b92ad84d1aa0b31265d9a14c58ffcaa236ae460c4365737145bb12489/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,943 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ba/69/db7732e6870f2f25c62edbc619cffc645394a8d54e6f8a928961036d78e1/ViennaRNA-2.6.2-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,943 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/04/c1/f5c82621ad6b749fd552d59de22f520f908277dd976f4d5a33f367d30de8/ViennaRNA-2.6.2-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,944 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f3/3e/5b5dec4d557b9f654c71b89f7aad42a7f9fc4c7c87f1a9fa68e5a51b3163/ViennaRNA-2.6.2-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,944 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c9/b9/89a9e6c7c919b641718d3a60d15cbf4b66862df180079ca0e5a8f418a6f0/ViennaRNA-2.6.2-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,945 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/47/04/470fb66f45780ae342dcd0c39fd3cb01e4fc59ea95066ba04c3d5e5f0f7d/ViennaRNA-2.6.2-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,945 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/76/ce/2ada9ed900e320fa7ed9bac4fb2a505e16b83a9116e21ec66958885b5f90/ViennaRNA-2.6.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,946 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3b/5e/16bbe0cda15be9dd038dbe30b3fb53d8f8edc21c5121f67bc594934b196c/ViennaRNA-2.6.2-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,946 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/66/7f/56eb458650c056b8c1ed6e22185238926e7836b5701d357ef896ce5abb33/ViennaRNA-2.6.2-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,947 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/1c/ef/3297531f48acfdeeb4f10083d0d7d7e5f7af06e7905ac2061344ccac6022/ViennaRNA-2.6.2-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,948 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/36/44/ac509347ec8f9b9c5cb69f4adc993b6f782bab7ed63639a1645450bb5d1c/ViennaRNA-2.6.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,948 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b8/34/89df39d5162afa18e7f487cb110d8aa8ae936d909b42e3be398e1c41b758/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,949 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/bb/0f/c33a98d884ada4b9c7478bed87eb0c66de9da9ecc45babf7604e652d7e36/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,949 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e6/57/7f28f32fa5b43507cd5d4b871fa8d5a43645db2acaf94a028c31b7dd1d8b/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,950 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/a7/fe40da076361a3c71467bcdbba0fc42bab89b4561869c966ffa2539dc942/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,951 Found link https://files.pythonhosted.org/packages/b3/73/44904c687790f2d9e151caf4dc6f1a97eb1beb5da1d089a79784abefa4a2/ViennaRNA-2.6.2.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2 2023-09-25T16:22:05,951 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a3/9e/1e2ae50082ea8589f06adc18fd9d4ba5d5eceeaf11fdb00a507a7633a6c5/ViennaRNA-2.6.3-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,952 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/5f/8f/c4b456b1d535ca3a5f5647e038f5ec9fab5925482fb538fcba51f2bc6a44/ViennaRNA-2.6.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,952 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/24/86/ceb1b342925dedb6a9e5fd4eddf3c66f3c511e42c4a8e34aa20aa04b6ed5/ViennaRNA-2.6.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,953 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/6c/c7/373786745bf38c4a76662c103222151f55d33f7a0862bf557fdb95578526/ViennaRNA-2.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,953 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/08/05/67326020bf4fb1f0b1326933453e8e41a36c3bfdea6b8cf87a07bcb3daf4/ViennaRNA-2.6.3-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,954 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/48/2f/e59a3b66f4ca9abc6e2aa2cd8ec21d1539d133756ebfbe8dfd2f3b591199/ViennaRNA-2.6.3-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,955 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7a/9f/8c2cb862e732bd3c2d8920a912cf8924605c62e97bcbcda002f83d533ff6/ViennaRNA-2.6.3-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,955 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/59/aa/b2280bcc389c924dc72a72c1ae8028fe695c4a245f41b2ab1eb8681d91bd/ViennaRNA-2.6.3-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,956 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/46/b4/70c9716977d6e0019246b03d258802c568d6fa5b3cd0987deeac778dc262/ViennaRNA-2.6.3-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,956 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b9/75/d9bbc8fb67bd585dc719c34ac4439a2bed0a92015c3548f9727b968612d4/ViennaRNA-2.6.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,957 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/6c/0f/0e8ab6395909f664f52e969308655ba73a5e76e0f39892bdae7da5348f1c/ViennaRNA-2.6.3-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,958 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c0/8b/042597cb78def0a5d3b60fd7d38b68b840831409035ce6a42a3910642b2a/ViennaRNA-2.6.3-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,958 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/55/61/7b341f99bd59f00ba5e6646a86409530c24802961ec2394d258eb3faffd5/ViennaRNA-2.6.3-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,959 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c8/0d/8b2999d3263215abd044039a2a7bede2211569f73da3015e2be1566d63db/ViennaRNA-2.6.3-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,959 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c2/34/0dbb99607323989dd0c085a539ce0a256c5f3f0d9acc10dda20a11b7e81e/ViennaRNA-2.6.3-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,960 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/cf/6f/95878bb677b6accc109fc47a6b94e1e590b3fefecce2fd8f241e477f3433/ViennaRNA-2.6.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,960 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3c/8b/9bbe373989b50478d4b0440c6e5262330fa653426c5b305a353e2a58113a/ViennaRNA-2.6.3-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,961 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/46/3a/f24fda11d092c8f67ce31b2ecd790ae788045df5a3ab4497b1fd57d8272e/ViennaRNA-2.6.3-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,961 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7b/85/3291c8de1dc632df62d74f99ffc7d5de990b293d61e14afbd72ca54f0776/ViennaRNA-2.6.3-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,962 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f5/14/8a958e38331b63c35f688645a7c8ca789e016290d25ef26faf9d34ea6d72/ViennaRNA-2.6.3-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,962 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b7/9c/e433da3ed44a34fef8aa9710e6838ef44ddb314455fc4b1a071edb952f23/ViennaRNA-2.6.3-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,963 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e3/90/8324e8a078d271eea60e30163e0097f40b5fffcfc2f22ebc60af685cb4ce/ViennaRNA-2.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,963 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/23/08/678c1fa8bd1c355fecfd9375434cfb452bdf1d9d5eb67147c2a8f2f0b85f/ViennaRNA-2.6.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,964 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/08/71/4cf098294da264cadbd1e35e25f5664b37278ce4640ff983f9a48a4b442f/ViennaRNA-2.6.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:22:05,965 Found link https://files.pythonhosted.org/packages/3b/c9/0f29227b21be07188d7eca38fdc1d4a8f5aff444e2301f635b48c5a9212a/ViennaRNA-2.6.3.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.3 2023-09-25T16:22:05,966 Fetching project page and analyzing links: https://www.piwheels.org/simple/viennarna/ 2023-09-25T16:22:05,968 Getting page https://www.piwheels.org/simple/viennarna/ 2023-09-25T16:22:05,970 Found index url https://www.piwheels.org/simple/ 2023-09-25T16:22:06,124 Fetched page https://www.piwheels.org/simple/viennarna/ as text/html 2023-09-25T16:22:06,125 Skipping link: not a file: https://www.piwheels.org/simple/viennarna/ 2023-09-25T16:22:06,125 Skipping link: not a file: https://pypi.org/simple/viennarna/ 2023-09-25T16:22:06,144 Given no hashes to check 1 links for project 'viennarna': discarding no candidates 2023-09-25T16:22:06,162 Collecting viennarna==2.6.2a0 2023-09-25T16:22:06,164 Created temporary directory: /tmp/pip-unpack-77lxpxcy 2023-09-25T16:22:06,381 Downloading ViennaRNA-2.6.2a0.tar.gz (4.8 MB) 2023-09-25T16:22:11,807 Added viennarna==2.6.2a0 from https://files.pythonhosted.org/packages/82/c0/576a5423bb28d496f75bedad46a8edeafaef439c2573d56d2340c525dc8e/ViennaRNA-2.6.2a0.tar.gz to build tracker '/tmp/pip-build-tracker-o2s6pcgi' 2023-09-25T16:22:11,812 Created temporary directory: /tmp/pip-build-env-u3074ylo 2023-09-25T16:22:11,816 Installing build dependencies: started 2023-09-25T16:22:11,817 Running command pip subprocess to install build dependencies 2023-09-25T16:22:12,966 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-25T16:22:13,474 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-25T16:22:15,002 Collecting setuptools>=61.0 2023-09-25T16:22:15,004 Obtaining dependency information for setuptools>=61.0 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-25T16:22:15,010 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-25T16:22:15,179 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-25T16:22:17,617 Installing collected packages: setuptools 2023-09-25T16:22:19,870 Successfully installed setuptools-68.2.2 2023-09-25T16:22:20,391 Installing build dependencies: finished with status 'done' 2023-09-25T16:22:20,394 Getting requirements to build wheel: started 2023-09-25T16:22:20,395 Running command Getting requirements to build wheel 2023-09-25T16:22:21,214 running egg_info 2023-09-25T16:22:21,217 writing ViennaRNA.egg-info/PKG-INFO 2023-09-25T16:22:21,221 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2023-09-25T16:22:21,223 writing top-level names to ViennaRNA.egg-info/top_level.txt 2023-09-25T16:22:21,244 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T16:22:21,427 reading manifest template 'MANIFEST.in' 2023-09-25T16:22:22,359 adding license file 'COPYING' 2023-09-25T16:22:22,361 adding license file 'AUTHORS' 2023-09-25T16:22:22,434 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T16:22:22,572 Getting requirements to build wheel: finished with status 'done' 2023-09-25T16:22:22,580 Installing backend dependencies: started 2023-09-25T16:22:22,581 Running command pip subprocess to install backend dependencies 2023-09-25T16:22:23,929 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-25T16:22:24,442 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-25T16:22:24,972 Collecting wheel 2023-09-25T16:22:24,988 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-25T16:22:27,187 Installing collected packages: wheel 2023-09-25T16:22:27,409 Creating /tmp/pip-build-env-u3074ylo/normal/local/bin 2023-09-25T16:22:27,411 changing mode of /tmp/pip-build-env-u3074ylo/normal/local/bin/wheel to 755 2023-09-25T16:22:27,422 Successfully installed wheel-0.41.2 2023-09-25T16:22:27,905 Installing backend dependencies: finished with status 'done' 2023-09-25T16:22:27,907 Created temporary directory: /tmp/pip-modern-metadata-3__z8a0r 2023-09-25T16:22:27,909 Preparing metadata (pyproject.toml): started 2023-09-25T16:22:27,910 Running command Preparing metadata (pyproject.toml) 2023-09-25T16:22:28,771 running dist_info 2023-09-25T16:22:28,776 creating /tmp/pip-modern-metadata-3__z8a0r/ViennaRNA.egg-info 2023-09-25T16:22:28,779 writing /tmp/pip-modern-metadata-3__z8a0r/ViennaRNA.egg-info/PKG-INFO 2023-09-25T16:22:28,783 writing dependency_links to /tmp/pip-modern-metadata-3__z8a0r/ViennaRNA.egg-info/dependency_links.txt 2023-09-25T16:22:28,785 writing top-level names to /tmp/pip-modern-metadata-3__z8a0r/ViennaRNA.egg-info/top_level.txt 2023-09-25T16:22:28,786 writing manifest file '/tmp/pip-modern-metadata-3__z8a0r/ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T16:22:28,822 reading manifest file '/tmp/pip-modern-metadata-3__z8a0r/ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T16:22:28,824 reading manifest template 'MANIFEST.in' 2023-09-25T16:22:29,620 adding license file 'COPYING' 2023-09-25T16:22:29,620 adding license file 'AUTHORS' 2023-09-25T16:22:29,668 writing manifest file '/tmp/pip-modern-metadata-3__z8a0r/ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T16:22:29,670 creating '/tmp/pip-modern-metadata-3__z8a0r/ViennaRNA-2.6.2a0.dist-info' 2023-09-25T16:22:29,835 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-25T16:22:29,841 Source in /tmp/pip-wheel-trpj7r5s/viennarna_dd81a0b1e96443ce8e0e89778f71d861 has version 2.6.2a0, which satisfies requirement viennarna==2.6.2a0 from https://files.pythonhosted.org/packages/82/c0/576a5423bb28d496f75bedad46a8edeafaef439c2573d56d2340c525dc8e/ViennaRNA-2.6.2a0.tar.gz 2023-09-25T16:22:29,842 Removed viennarna==2.6.2a0 from https://files.pythonhosted.org/packages/82/c0/576a5423bb28d496f75bedad46a8edeafaef439c2573d56d2340c525dc8e/ViennaRNA-2.6.2a0.tar.gz from build tracker '/tmp/pip-build-tracker-o2s6pcgi' 2023-09-25T16:22:29,849 Created temporary directory: /tmp/pip-unpack-git_m0dv 2023-09-25T16:22:29,850 Created temporary directory: /tmp/pip-unpack-8sl03h_7 2023-09-25T16:22:29,855 Building wheels for collected packages: viennarna 2023-09-25T16:22:29,859 Created temporary directory: /tmp/pip-wheel-73sm66oy 2023-09-25T16:22:29,860 Destination directory: /tmp/pip-wheel-73sm66oy 2023-09-25T16:22:29,862 Building wheel for viennarna (pyproject.toml): started 2023-09-25T16:22:29,864 Running command Building wheel for viennarna (pyproject.toml) 2023-09-25T16:22:30,644 running bdist_wheel 2023-09-25T16:22:30,659 running build 2023-09-25T16:22:30,659 running build_py 2023-09-25T16:22:30,663 creating build 2023-09-25T16:22:30,664 creating build/lib.linux-armv7l-cpython-311 2023-09-25T16:22:30,664 creating build/lib.linux-armv7l-cpython-311/RNA 2023-09-25T16:22:30,665 copying interfaces/Python/RNA/__init__.py -> build/lib.linux-armv7l-cpython-311/RNA 2023-09-25T16:22:30,668 copying interfaces/Python/RNA/RNA.py -> build/lib.linux-armv7l-cpython-311/RNA 2023-09-25T16:22:30,678 creating build/lib.linux-armv7l-cpython-311/ViennaRNA 2023-09-25T16:22:30,679 copying interfaces/Python/ViennaRNA/__init__.py -> build/lib.linux-armv7l-cpython-311/ViennaRNA 2023-09-25T16:22:30,682 running egg_info 2023-09-25T16:22:30,685 writing ViennaRNA.egg-info/PKG-INFO 2023-09-25T16:22:30,688 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2023-09-25T16:22:30,690 writing top-level names to ViennaRNA.egg-info/top_level.txt 2023-09-25T16:22:30,700 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T16:22:30,731 reading manifest template 'MANIFEST.in' 2023-09-25T16:22:31,617 adding license file 'COPYING' 2023-09-25T16:22:31,618 adding license file 'AUTHORS' 2023-09-25T16:22:31,679 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T16:22:31,730 running build_ext 2023-09-25T16:22:31,736 building 'RNA._RNA' extension 2023-09-25T16:22:31,739 creating build/temp.linux-armv7l-cpython-311 2023-09-25T16:22:31,739 creating build/temp.linux-armv7l-cpython-311/interfaces 2023-09-25T16:22:31,740 creating build/temp.linux-armv7l-cpython-311/interfaces/Python 2023-09-25T16:22:31,741 creating build/temp.linux-armv7l-cpython-311/src 2023-09-25T16:22:31,741 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA 2023-09-25T16:22:31,743 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints 2023-09-25T16:22:31,744 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures 2023-09-25T16:22:31,745 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io 2023-09-25T16:22:31,746 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape 2023-09-25T16:22:31,747 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops 2023-09-25T16:22:31,748 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params 2023-09-25T16:22:31,749 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting 2023-09-25T16:22:31,750 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler 2023-09-25T16:22:31,750 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/naview 2023-09-25T16:22:31,751 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/search 2023-09-25T16:22:31,752 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils 2023-09-25T16:22:31,753 creating build/temp.linux-armv7l-cpython-311/src/cephes 2023-09-25T16:22:31,754 creating build/temp.linux-armv7l-cpython-311/src/json 2023-09-25T16:22:31,755 creating build/temp.linux-armv7l-cpython-311/src/libsvm-3.31 2023-09-25T16:22:31,755 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c interfaces/Python/RNA_wrap.cpp -o build/temp.linux-armv7l-cpython-311/interfaces/Python/RNA_wrap.o -fopenmp 2023-09-25T16:22:46,332 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned char var_array_Sl_unsigned_SS_char_Sg____getitem__(const var_array*, int)’: 2023-09-25T16:22:46,333 interfaces/Python/RNA_wrap.cpp:7536:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:22:46,334 7536 | (i >= max_i)) 2023-09-25T16:22:46,334 | ~~^~~~~~~~ 2023-09-25T16:22:46,336 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned char var_array_Sl_unsigned_SS_char_Sg____setitem__(const var_array*, int, unsigned char)’: 2023-09-25T16:22:46,336 interfaces/Python/RNA_wrap.cpp:7576:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:22:46,337 7576 | (i >= max_i)) 2023-09-25T16:22:46,338 | ~~^~~~~~~~ 2023-09-25T16:22:46,354 interfaces/Python/RNA_wrap.cpp: In function ‘const char var_array_Sl_char_Sg____getitem__(const var_array*, int)’: 2023-09-25T16:22:46,355 interfaces/Python/RNA_wrap.cpp:7655:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:22:46,356 7655 | (i >= max_i)) 2023-09-25T16:22:46,356 | ~~^~~~~~~~ 2023-09-25T16:22:46,357 interfaces/Python/RNA_wrap.cpp: In function ‘const char var_array_Sl_char_Sg____setitem__(const var_array*, int, char)’: 2023-09-25T16:22:46,358 interfaces/Python/RNA_wrap.cpp:7672:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:22:46,358 7672 | (i >= max_i)) 2023-09-25T16:22:46,359 | ~~^~~~~~~~ 2023-09-25T16:22:46,378 interfaces/Python/RNA_wrap.cpp: In function ‘const short int var_array_Sl_short_Sg____getitem__(const var_array*, int)’: 2023-09-25T16:22:46,378 interfaces/Python/RNA_wrap.cpp:7751:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:22:46,379 7751 | (i >= max_i)) 2023-09-25T16:22:46,379 | ~~^~~~~~~~ 2023-09-25T16:22:46,381 interfaces/Python/RNA_wrap.cpp: In function ‘const short int var_array_Sl_short_Sg____setitem__(const var_array*, int, short int)’: 2023-09-25T16:22:46,381 interfaces/Python/RNA_wrap.cpp:7768:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:22:46,382 7768 | (i >= max_i)) 2023-09-25T16:22:46,382 | ~~^~~~~~~~ 2023-09-25T16:22:46,395 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned int var_array_Sl_unsigned_SS_int_Sg____getitem__(const var_array*, int)’: 2023-09-25T16:22:46,395 interfaces/Python/RNA_wrap.cpp:7870:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:22:46,396 7870 | (i >= max_i)) 2023-09-25T16:22:46,396 | ~~^~~~~~~~ 2023-09-25T16:22:46,398 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned int var_array_Sl_unsigned_SS_int_Sg____setitem__(const var_array*, int, unsigned int)’: 2023-09-25T16:22:46,398 interfaces/Python/RNA_wrap.cpp:7887:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:22:46,399 7887 | (i >= max_i)) 2023-09-25T16:22:46,400 | ~~^~~~~~~~ 2023-09-25T16:22:46,410 interfaces/Python/RNA_wrap.cpp: In function ‘const int var_array_Sl_int_Sg____getitem__(const var_array*, int)’: 2023-09-25T16:22:46,410 interfaces/Python/RNA_wrap.cpp:7966:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:22:46,411 7966 | (i >= max_i)) 2023-09-25T16:22:46,411 | ~~^~~~~~~~ 2023-09-25T16:22:46,413 interfaces/Python/RNA_wrap.cpp: In function ‘const int var_array_Sl_int_Sg____setitem__(const var_array*, int, int)’: 2023-09-25T16:22:46,414 interfaces/Python/RNA_wrap.cpp:7983:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:22:46,414 7983 | (i >= max_i)) 2023-09-25T16:22:46,415 | ~~^~~~~~~~ 2023-09-25T16:22:46,425 interfaces/Python/RNA_wrap.cpp: In function ‘const FLT_OR_DBL var_array_Sl_FLT_OR_DBL_Sg____getitem__(const var_array*, int)’: 2023-09-25T16:22:46,426 interfaces/Python/RNA_wrap.cpp:8062:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:22:46,426 8062 | (i >= max_i)) 2023-09-25T16:22:46,427 | ~~^~~~~~~~ 2023-09-25T16:22:46,429 interfaces/Python/RNA_wrap.cpp: In function ‘const FLT_OR_DBL var_array_Sl_FLT_OR_DBL_Sg____setitem__(const var_array*, int, FLT_OR_DBL)’: 2023-09-25T16:22:46,429 interfaces/Python/RNA_wrap.cpp:8079:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:22:46,430 8079 | (i >= max_i)) 2023-09-25T16:22:46,431 | ~~^~~~~~~~ 2023-09-25T16:22:46,508 interfaces/Python/RNA_wrap.cpp: In function ‘var_array* my_ptable(std::string, unsigned int)’: 2023-09-25T16:22:46,509 interfaces/Python/RNA_wrap.cpp:8527:21: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T16:22:46,510 8527 | int i; 2023-09-25T16:22:46,510 | ^ 2023-09-25T16:22:46,511 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_pt_pk_remove(std::vector >, unsigned int)’: 2023-09-25T16:22:46,511 interfaces/Python/RNA_wrap.cpp:8581:15: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:22:46,512 8581 | if (pt[0] != pt.size() - 1) 2023-09-25T16:22:46,524 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_loopidx_from_ptable(std::vector >)’: 2023-09-25T16:22:46,525 interfaces/Python/RNA_wrap.cpp:8733:25: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T16:22:46,525 8733 | int i, *idx; 2023-09-25T16:22:46,526 | ^ 2023-09-25T16:22:46,585 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, float*)’: 2023-09-25T16:22:46,585 interfaces/Python/RNA_wrap.cpp:9746:11: warning: unused variable ‘s’ [-Wunused-variable] 2023-09-25T16:22:46,586 9746 | char *s, **tok, **ptr, *struc, *sequence; 2023-09-25T16:22:46,586 | ^ 2023-09-25T16:22:46,588 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, char*, float*)’: 2023-09-25T16:22:46,589 interfaces/Python/RNA_wrap.cpp:9797:11: warning: unused variable ‘s’ [-Wunused-variable] 2023-09-25T16:22:46,590 9797 | char *s, **tok, **ptr, *struc, *sequence; 2023-09-25T16:22:46,590 | ^ 2023-09-25T16:22:46,600 interfaces/Python/RNA_wrap.cpp: In function ‘double my_pf_add(double, double, double)’: 2023-09-25T16:22:46,601 interfaces/Python/RNA_wrap.cpp:10050:12: warning: unused variable ‘result’ [-Wunused-variable] 2023-09-25T16:22:46,601 10050 | double result = 0; 2023-09-25T16:22:46,602 | ^~~~~~ 2023-09-25T16:22:46,667 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_command_s* my_file_commands_read(std::string, unsigned int)’: 2023-09-25T16:22:46,667 interfaces/Python/RNA_wrap.cpp:10825:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T16:22:46,668 10825 | int i; 2023-09-25T16:22:46,669 | ^ 2023-09-25T16:22:46,780 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_sc_f_callback(int, int, int, int, unsigned char, void*)’: 2023-09-25T16:22:46,781 interfaces/Python/RNA_wrap.cpp:12184:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:22:46,782 12184 | PyObject *func, *arglist, *result, *err; 2023-09-25T16:22:46,782 | ^~~~~~~ 2023-09-25T16:22:46,786 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_basepair_t* py_wrap_sc_bt_callback(int, int, int, int, unsigned char, void*)’: 2023-09-25T16:22:46,787 interfaces/Python/RNA_wrap.cpp:12256:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:22:46,788 12256 | PyObject *func, *arglist, *result, *bp, *err; 2023-09-25T16:22:46,788 | ^~~~~~~ 2023-09-25T16:22:46,790 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_sc_exp_f_callback(int, int, int, int, unsigned char, void*)’: 2023-09-25T16:22:46,791 interfaces/Python/RNA_wrap.cpp:12375:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:22:46,792 12375 | PyObject *func, *arglist, *result, *err; 2023-09-25T16:22:46,792 | ^~~~~~~ 2023-09-25T16:22:46,805 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_ud_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2023-09-25T16:22:46,805 interfaces/Python/RNA_wrap.cpp:12815:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:22:46,806 12815 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2023-09-25T16:22:46,807 | ^~~~~~~ 2023-09-25T16:22:46,809 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_exp_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2023-09-25T16:22:46,810 interfaces/Python/RNA_wrap.cpp:12875:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:22:46,810 12875 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2023-09-25T16:22:46,811 | ^~~~~~~ 2023-09-25T16:22:46,813 interfaces/Python/RNA_wrap.cpp: In function ‘void py_wrap_ud_prob_add(vrna_fold_compound_t*, int, int, unsigned int, FLT_OR_DBL, void*)’: 2023-09-25T16:22:46,814 interfaces/Python/RNA_wrap.cpp:12935:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:22:46,814 12935 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_prob; 2023-09-25T16:22:46,815 | ^~~~~~~ 2023-09-25T16:22:46,817 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_prob_get(vrna_fold_compound_t*, int, int, unsigned int, int, void*)’: 2023-09-25T16:22:46,818 interfaces/Python/RNA_wrap.cpp:12994:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:22:46,819 12994 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_motif; 2023-09-25T16:22:46,819 | ^~~~~~~ 2023-09-25T16:22:46,822 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_subopt_cb(const char*, float, void*)’: 2023-09-25T16:22:46,823 interfaces/Python/RNA_wrap.cpp:13096:37: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:22:46,823 13096 | PyObject *func, *arglist, *result, *err, *py_structure, *py_energy; 2023-09-25T16:22:46,824 | ^~~~~~~ 2023-09-25T16:22:46,826 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_bs_cb(const char*, void*)’: 2023-09-25T16:22:46,827 interfaces/Python/RNA_wrap.cpp:13182:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:22:46,827 13182 | PyObject *func, *arglist, *result, *err; 2023-09-25T16:22:46,828 | ^~~~~~~ 2023-09-25T16:22:46,829 interfaces/Python/RNA_wrap.cpp:13187:28: warning: unused variable ‘py_energy’ [-Wunused-variable] 2023-09-25T16:22:46,829 13187 | PyObject *py_structure, *py_energy; 2023-09-25T16:22:46,830 | ^~~~~~~~~ 2023-09-25T16:22:46,830 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_cb(int, int, const char*, float, void*)’: 2023-09-25T16:22:46,831 interfaces/Python/RNA_wrap.cpp:13281:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:22:46,832 13281 | PyObject *func, *arglist, *result, *err; 2023-09-25T16:22:46,832 | ^~~~~~~ 2023-09-25T16:22:46,833 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_zscore_cb(int, int, const char*, float, float, void*)’: 2023-09-25T16:22:46,834 interfaces/Python/RNA_wrap.cpp:13335:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:22:46,834 13335 | PyObject *func, *arglist, *result, *err; 2023-09-25T16:22:46,835 | ^~~~~~~ 2023-09-25T16:22:46,841 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_pf_window_cb(FLT_OR_DBL*, int, int, int, unsigned int, void*)’: 2023-09-25T16:22:46,841 interfaces/Python/RNA_wrap.cpp:13487:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:22:46,842 13487 | PyObject *func, *arglist, *result, *pr_list, *err; 2023-09-25T16:22:46,843 | ^~~~~~~ 2023-09-25T16:22:46,846 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_heat_capacity_cb(float, float, void*)’: 2023-09-25T16:22:46,846 interfaces/Python/RNA_wrap.cpp:13646:43: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:22:46,847 13646 | PyObject *func, *arglist, *result, *err, *py_temp, *py_hc; 2023-09-25T16:22:46,848 | ^~~~~~~ 2023-09-25T16:22:46,850 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_move_update_cb(vrna_fold_compound_t*, vrna_move_t, unsigned int, void*)’: 2023-09-25T16:22:46,851 interfaces/Python/RNA_wrap.cpp:13740:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:22:46,851 13740 | PyObject *func, *arglist, *result, *err, *py_fc, *py_neighbor, *py_state; 2023-09-25T16:22:46,852 | ^~~~~~~ 2023-09-25T16:22:46,882 interfaces/Python/RNA_wrap.cpp: In function ‘double vrna_fold_compound_t_exp_E_ext_stem(vrna_fold_compound_t*, int, int)’: 2023-09-25T16:22:46,882 interfaces/Python/RNA_wrap.cpp:14100:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:22:46,883 14100 | if (j < self->length) 2023-09-25T16:22:46,883 | ~~^~~~~~~~~~~~~~ 2023-09-25T16:22:46,918 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2023-09-25T16:22:46,918 interfaces/Python/RNA_wrap.cpp:14533:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T16:22:46,919 14533 | int i; 2023-09-25T16:22:46,920 | ^ 2023-09-25T16:22:46,923 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_gradient__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int)’: 2023-09-25T16:22:46,924 interfaces/Python/RNA_wrap.cpp:14577:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T16:22:46,925 14577 | int i; 2023-09-25T16:22:46,925 | ^ 2023-09-25T16:22:46,928 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_random__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2023-09-25T16:22:46,929 interfaces/Python/RNA_wrap.cpp:14621:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T16:22:46,930 14621 | int i; 2023-09-25T16:22:46,930 | ^ 2023-09-25T16:22:49,410 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_temperature_set(PyObject*)’: 2023-09-25T16:22:49,411 interfaces/Python/RNA_wrap.cpp:53225:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,412 53225 | fail: 2023-09-25T16:22:49,412 | ^~~~ 2023-09-25T16:22:49,413 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_dangles_set(PyObject*)’: 2023-09-25T16:22:49,414 interfaces/Python/RNA_wrap.cpp:53245:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,414 53245 | fail: 2023-09-25T16:22:49,415 | ^~~~ 2023-09-25T16:22:49,416 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_betaScale_set(PyObject*)’: 2023-09-25T16:22:49,416 interfaces/Python/RNA_wrap.cpp:53265:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,417 53265 | fail: 2023-09-25T16:22:49,418 | ^~~~ 2023-09-25T16:22:49,418 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_pf_smooth_set(PyObject*)’: 2023-09-25T16:22:49,419 interfaces/Python/RNA_wrap.cpp:53285:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,420 53285 | fail: 2023-09-25T16:22:49,421 | ^~~~ 2023-09-25T16:22:49,421 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_tetra_loop_set(PyObject*)’: 2023-09-25T16:22:49,422 interfaces/Python/RNA_wrap.cpp:53305:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,422 53305 | fail: 2023-09-25T16:22:49,423 | ^~~~ 2023-09-25T16:22:49,423 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_special_hp_set(PyObject*)’: 2023-09-25T16:22:49,423 interfaces/Python/RNA_wrap.cpp:53325:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,424 53325 | fail: 2023-09-25T16:22:49,425 | ^~~~ 2023-09-25T16:22:49,425 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLonelyPairs_set(PyObject*)’: 2023-09-25T16:22:49,425 interfaces/Python/RNA_wrap.cpp:53345:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,426 53345 | fail: 2023-09-25T16:22:49,426 | ^~~~ 2023-09-25T16:22:49,427 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLP_set(PyObject*)’: 2023-09-25T16:22:49,428 interfaces/Python/RNA_wrap.cpp:53365:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,428 53365 | fail: 2023-09-25T16:22:49,429 | ^~~~ 2023-09-25T16:22:49,429 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGU_set(PyObject*)’: 2023-09-25T16:22:49,430 interfaces/Python/RNA_wrap.cpp:53385:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,430 53385 | fail: 2023-09-25T16:22:49,431 | ^~~~ 2023-09-25T16:22:49,432 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_no_closingGU_set(PyObject*)’: 2023-09-25T16:22:49,432 interfaces/Python/RNA_wrap.cpp:53405:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,433 53405 | fail: 2023-09-25T16:22:49,434 | ^~~~ 2023-09-25T16:22:49,435 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGUclosure_set(PyObject*)’: 2023-09-25T16:22:49,436 interfaces/Python/RNA_wrap.cpp:53425:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,436 53425 | fail: 2023-09-25T16:22:49,437 | ^~~~ 2023-09-25T16:22:49,438 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_logML_set(PyObject*)’: 2023-09-25T16:22:49,439 interfaces/Python/RNA_wrap.cpp:53445:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,439 53445 | fail: 2023-09-25T16:22:49,440 | ^~~~ 2023-09-25T16:22:49,441 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_circ_set(PyObject*)’: 2023-09-25T16:22:49,441 interfaces/Python/RNA_wrap.cpp:53465:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,442 53465 | fail: 2023-09-25T16:22:49,443 | ^~~~ 2023-09-25T16:22:49,443 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_gquad_set(PyObject*)’: 2023-09-25T16:22:49,444 interfaces/Python/RNA_wrap.cpp:53485:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,445 53485 | fail: 2023-09-25T16:22:49,445 | ^~~~ 2023-09-25T16:22:49,446 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_uniq_ML_set(PyObject*)’: 2023-09-25T16:22:49,447 interfaces/Python/RNA_wrap.cpp:53505:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,448 53505 | fail: 2023-09-25T16:22:49,448 | ^~~~ 2023-09-25T16:22:49,449 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_energy_set_set(PyObject*)’: 2023-09-25T16:22:49,450 interfaces/Python/RNA_wrap.cpp:53525:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,450 53525 | fail: 2023-09-25T16:22:49,451 | ^~~~ 2023-09-25T16:22:49,452 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_backtrack_set(PyObject*)’: 2023-09-25T16:22:49,452 interfaces/Python/RNA_wrap.cpp:53545:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,453 53545 | fail: 2023-09-25T16:22:49,453 | ^~~~ 2023-09-25T16:22:49,454 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_do_backtrack_set(PyObject*)’: 2023-09-25T16:22:49,454 interfaces/Python/RNA_wrap.cpp:53588:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,455 53588 | fail: 2023-09-25T16:22:49,455 | ^~~~ 2023-09-25T16:22:49,456 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_compute_bpp_set(PyObject*)’: 2023-09-25T16:22:49,456 interfaces/Python/RNA_wrap.cpp:53608:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,457 53608 | fail: 2023-09-25T16:22:49,457 | ^~~~ 2023-09-25T16:22:49,458 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_max_bp_span_set(PyObject*)’: 2023-09-25T16:22:49,459 interfaces/Python/RNA_wrap.cpp:53628:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,459 53628 | fail: 2023-09-25T16:22:49,460 | ^~~~ 2023-09-25T16:22:49,460 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_min_loop_size_set(PyObject*)’: 2023-09-25T16:22:49,461 interfaces/Python/RNA_wrap.cpp:53648:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,461 53648 | fail: 2023-09-25T16:22:49,462 | ^~~~ 2023-09-25T16:22:49,462 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_window_size_set(PyObject*)’: 2023-09-25T16:22:49,463 interfaces/Python/RNA_wrap.cpp:53668:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,463 53668 | fail: 2023-09-25T16:22:49,464 | ^~~~ 2023-09-25T16:22:49,465 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_ribo_set(PyObject*)’: 2023-09-25T16:22:49,466 interfaces/Python/RNA_wrap.cpp:53711:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,466 53711 | fail: 2023-09-25T16:22:49,467 | ^~~~ 2023-09-25T16:22:49,468 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_cv_fact_set(PyObject*)’: 2023-09-25T16:22:49,468 interfaces/Python/RNA_wrap.cpp:53731:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,469 53731 | fail: 2023-09-25T16:22:49,470 | ^~~~ 2023-09-25T16:22:49,470 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_nc_fact_set(PyObject*)’: 2023-09-25T16:22:49,471 interfaces/Python/RNA_wrap.cpp:53751:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,472 53751 | fail: 2023-09-25T16:22:49,473 | ^~~~ 2023-09-25T16:22:49,473 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_sfact_set(PyObject*)’: 2023-09-25T16:22:49,474 interfaces/Python/RNA_wrap.cpp:53771:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,474 53771 | fail: 2023-09-25T16:22:49,475 | ^~~~ 2023-09-25T16:22:49,476 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_salt_set(PyObject*)’: 2023-09-25T16:22:49,476 interfaces/Python/RNA_wrap.cpp:53791:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,477 53791 | fail: 2023-09-25T16:22:49,478 | ^~~~ 2023-09-25T16:22:49,478 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInit_set(PyObject*)’: 2023-09-25T16:22:49,479 interfaces/Python/RNA_wrap.cpp:53811:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,480 53811 | fail: 2023-09-25T16:22:49,480 | ^~~~ 2023-09-25T16:22:49,481 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInitFact_set(PyObject*)’: 2023-09-25T16:22:49,482 interfaces/Python/RNA_wrap.cpp:53831:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:22:49,483 53831 | fail: 2023-09-25T16:22:49,484 | ^~~~ 2023-09-25T16:22:51,370 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:22:51,371 interfaces/Python/RNA_wrap.cpp:84236:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T16:22:51,371 84236 | PyObject *o, *o2, *o3; 2023-09-25T16:22:51,372 | ^~ 2023-09-25T16:22:51,376 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:22:51,376 interfaces/Python/RNA_wrap.cpp:84318:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T16:22:51,377 84318 | PyObject *o, *o2, *o3; 2023-09-25T16:22:51,378 | ^~ 2023-09-25T16:22:51,382 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:22:51,383 interfaces/Python/RNA_wrap.cpp:84408:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T16:22:51,383 84408 | PyObject *o, *o2, *o3; 2023-09-25T16:22:51,384 | ^~ 2023-09-25T16:22:51,518 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:22:51,519 interfaces/Python/RNA_wrap.cpp:86668:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T16:22:51,519 86668 | PyObject *o, *o2, *o3; 2023-09-25T16:22:51,520 | ^~ 2023-09-25T16:22:51,530 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:22:51,530 interfaces/Python/RNA_wrap.cpp:86913:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T16:22:51,531 86913 | PyObject *o, *o2, *o3; 2023-09-25T16:22:51,532 | ^~ 2023-09-25T16:22:51,543 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:22:51,544 interfaces/Python/RNA_wrap.cpp:87196:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T16:22:51,544 87196 | PyObject *o, *o2, *o3; 2023-09-25T16:22:51,545 | ^~ 2023-09-25T16:23:30,334 In file included from /usr/include/c++/12/vector:70, 2023-09-25T16:23:30,335 from interfaces/Python/RNA_wrap.cpp:4335: 2023-09-25T16:23:30,335 /usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T16:23:30,336 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:23:30,337 739 | vector<_Tp, _Alloc>:: 2023-09-25T16:23:30,337 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:23:30,338 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:23:30,339 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:23:30,904 /usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’: 2023-09-25T16:23:30,905 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:23:30,906 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:23:30,907 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:00,481 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:24:00,482 interfaces/Python/RNA_wrap.cpp:1084:82: warning: ‘retval5’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:24:00,482 1084 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T16:24:00,483 | ^ 2023-09-25T16:24:00,489 interfaces/Python/RNA_wrap.cpp:86616:26: note: ‘retval5’ was declared here 2023-09-25T16:24:00,490 86616 | vrna_pbacktrack_mem_t *retval5 ; 2023-09-25T16:24:00,491 | ^~~~~~~ 2023-09-25T16:24:00,592 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:24:00,593 interfaces/Python/RNA_wrap.cpp:1084:82: warning: ‘retval6’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:24:00,593 1084 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T16:24:00,594 | ^ 2023-09-25T16:24:00,601 interfaces/Python/RNA_wrap.cpp:86856:26: note: ‘retval6’ was declared here 2023-09-25T16:24:00,602 86856 | vrna_pbacktrack_mem_t *retval6 ; 2023-09-25T16:24:00,603 | ^~~~~~~ 2023-09-25T16:24:00,716 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:24:00,717 interfaces/Python/RNA_wrap.cpp:1084:82: warning: ‘retval7’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:24:00,717 1084 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T16:24:00,718 | ^ 2023-09-25T16:24:00,725 interfaces/Python/RNA_wrap.cpp:87134:26: note: ‘retval7’ was declared here 2023-09-25T16:24:00,725 87134 | vrna_pbacktrack_mem_t *retval7 ; 2023-09-25T16:24:00,726 | ^~~~~~~ 2023-09-25T16:24:37,426 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-25T16:24:37,426 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:24:37,427 439 | vector<_Tp, _Alloc>:: 2023-09-25T16:24:37,427 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:37,468 In file included from /usr/include/c++/12/vector:64: 2023-09-25T16:24:37,468 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:24:37,469 inlined from ‘PyObject* _wrap_DoubleVector_push_back(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23425:24: 2023-09-25T16:24:37,470 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:37,471 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:24:37,471 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:24:37,548 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:24:37,549 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4985:30: 2023-09-25T16:24:37,549 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:37,550 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:24:37,550 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:24:37,551 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:24:37,552 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5000:28: 2023-09-25T16:24:37,552 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:37,553 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:24:37,553 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:24:37,622 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:24:37,623 inlined from ‘void std_vector_Sl_double_Sg__append(std::vector >*, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6132:22, 2023-09-25T16:24:37,624 inlined from ‘PyObject* _wrap_DoubleVector_append(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:22724:38: 2023-09-25T16:24:37,624 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:37,625 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:24:37,626 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:24:37,661 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]’: 2023-09-25T16:24:37,662 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:24:37,663 175 | vector<_Tp, _Alloc>:: 2023-09-25T16:24:37,664 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:37,676 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = double; _Alloc = std::allocator]’: 2023-09-25T16:24:37,676 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:24:37,677 189 | vector<_Tp, _Alloc>:: 2023-09-25T16:24:37,677 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:37,678 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:24:37,717 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:24:37,718 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5084:20: 2023-09-25T16:24:37,719 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:37,719 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T16:24:37,720 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:37,720 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:24:37,721 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5089:27: 2023-09-25T16:24:37,721 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:37,722 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T16:24:37,722 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:37,723 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:24:37,723 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5101:33: 2023-09-25T16:24:37,724 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:37,725 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T16:24:37,725 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:37,826 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:24:37,827 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-09-25T16:24:37,827 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5025:23: 2023-09-25T16:24:37,828 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:24:37,829 1779 | _M_range_insert(__pos, __first, __last, 2023-09-25T16:24:37,830 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:37,830 1780 | std::__iterator_category(__first)); 2023-09-25T16:24:37,831 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:37,831 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:37,832 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:24:37,832 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5032:22: 2023-09-25T16:24:37,833 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:37,833 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T16:24:37,834 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:37,834 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:24:37,835 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-09-25T16:24:37,836 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5035:23: 2023-09-25T16:24:37,836 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:24:37,837 1779 | _M_range_insert(__pos, __first, __last, 2023-09-25T16:24:37,838 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:37,838 1780 | std::__iterator_category(__first)); 2023-09-25T16:24:37,839 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:37,839 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:37,929 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:24:37,929 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5084:20, 2023-09-25T16:24:37,930 inlined from ‘void std_vector_Sl_double_Sg____delslice__(std::vector >*, std::vector >::difference_type, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:6069:21, 2023-09-25T16:24:37,931 inlined from ‘PyObject* _wrap_DoubleVector___delslice__(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:22186:46: 2023-09-25T16:24:37,931 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:37,932 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T16:24:37,932 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:37,980 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(iterator, _Arg&&) [with _Arg = double; _Tp = double; _Alloc = std::allocator]’: 2023-09-25T16:24:37,981 /usr/include/c++/12/bits/vector.tcc:407:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:24:37,981 407 | vector<_Tp, _Alloc>:: 2023-09-25T16:24:37,982 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:38,039 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2023-09-25T16:24:38,039 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:24:38,040 523 | vector<_Tp, _Alloc>:: 2023-09-25T16:24:38,041 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:46,642 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const vrna_path_s&}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T16:24:46,643 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:24:46,644 439 | vector<_Tp, _Alloc>:: 2023-09-25T16:24:46,644 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:46,686 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:24:46,686 inlined from ‘std::vector > my_get_path(std::string, std::string, std::string, int)’ at interfaces/Python/RNA_wrap.cpp:11274:20: 2023-09-25T16:24:46,687 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:46,688 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:24:46,689 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:24:46,755 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:24:46,756 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4985:30: 2023-09-25T16:24:46,757 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:46,758 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:24:46,758 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:24:46,759 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:24:46,760 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5000:28: 2023-09-25T16:24:46,761 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:46,761 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:24:46,762 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:24:46,836 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:24:46,836 inlined from ‘void std_vector_Sl_vrna_path_t_Sg__append(std::vector >*, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:7238:22, 2023-09-25T16:24:46,837 inlined from ‘PyObject* _wrap_PathVector_append(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:41872:43: 2023-09-25T16:24:46,837 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:46,838 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:24:46,838 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:24:46,887 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:24:46,888 inlined from ‘PyObject* _wrap_PathVector_push_back(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42573:24: 2023-09-25T16:24:46,888 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:46,889 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:24:46,889 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:24:46,932 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T16:24:46,932 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:24:46,933 175 | vector<_Tp, _Alloc>:: 2023-09-25T16:24:46,933 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:46,946 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T16:24:46,946 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:24:46,947 189 | vector<_Tp, _Alloc>:: 2023-09-25T16:24:46,948 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:46,948 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:24:46,987 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:24:46,988 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5084:20: 2023-09-25T16:24:46,989 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:46,990 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T16:24:46,990 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:46,991 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:24:46,992 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5089:27: 2023-09-25T16:24:46,993 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:46,993 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T16:24:46,994 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:46,995 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:24:46,996 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5101:33: 2023-09-25T16:24:46,996 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:46,997 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T16:24:46,998 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:47,095 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:24:47,097 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-09-25T16:24:47,099 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5025:23: 2023-09-25T16:24:47,101 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:24:47,103 1779 | _M_range_insert(__pos, __first, __last, 2023-09-25T16:24:47,104 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:47,106 1780 | std::__iterator_category(__first)); 2023-09-25T16:24:47,107 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:47,109 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:47,111 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:24:47,114 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5032:22: 2023-09-25T16:24:47,115 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:47,117 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T16:24:47,118 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:47,118 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:24:47,119 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-09-25T16:24:47,119 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5035:23: 2023-09-25T16:24:47,120 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:24:47,120 1779 | _M_range_insert(__pos, __first, __last, 2023-09-25T16:24:47,121 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:47,121 1780 | std::__iterator_category(__first)); 2023-09-25T16:24:47,122 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:47,123 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:47,205 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:24:47,207 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5084:20, 2023-09-25T16:24:47,208 inlined from ‘void std_vector_Sl_vrna_path_t_Sg____delslice__(std::vector >*, std::vector >::difference_type, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:7175:21, 2023-09-25T16:24:47,209 inlined from ‘PyObject* _wrap_PathVector___delslice__(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:41334:51: 2023-09-25T16:24:47,209 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:47,210 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T16:24:47,210 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:47,256 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(iterator, _Arg&&) [with _Arg = vrna_path_s; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T16:24:47,257 /usr/include/c++/12/bits/vector.tcc:407:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:24:47,258 407 | vector<_Tp, _Alloc>:: 2023-09-25T16:24:47,258 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:47,321 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T16:24:47,322 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:24:47,323 523 | vector<_Tp, _Alloc>:: 2023-09-25T16:24:47,323 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:55,336 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-25T16:24:55,337 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:24:55,337 439 | vector<_Tp, _Alloc>:: 2023-09-25T16:24:55,338 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:55,386 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:24:55,386 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-25T16:24:55,387 inlined from ‘std::vector > my_aln_conservation_struct(std::vector, std::allocator > >, std::string, vrna_md_t*)’ at interfaces/Python/RNA_wrap.cpp:8999:31: 2023-09-25T16:24:55,388 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:55,388 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-25T16:24:55,389 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:55,429 In file included from /usr/include/c++/12/algorithm:61, 2023-09-25T16:24:55,430 from interfaces/Python/RNA_wrap.cpp:4332: 2023-09-25T16:24:55,430 /usr/include/c++/12/bits/stl_algo.h: In function ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = back_insert_iterator > >; _UnaryOperation = double (*)(const double&)]’: 2023-09-25T16:24:55,431 /usr/include/c++/12/bits/stl_algo.h:4252:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:55,431 4252 | transform(_InputIterator __first, _InputIterator __last, 2023-09-25T16:24:55,432 | ^~~~~~~~~ 2023-09-25T16:24:55,433 /usr/include/c++/12/bits/stl_algo.h:4252:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:55,434 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:24:55,434 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-25T16:24:55,435 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(typename _Container::value_type&&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:743:22, 2023-09-25T16:24:55,435 inlined from ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = back_insert_iterator > >; _UnaryOperation = double (*)(const double&)]’ at /usr/include/c++/12/bits/stl_algo.h:4263:12: 2023-09-25T16:24:55,436 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:55,436 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-25T16:24:55,437 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:55,501 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:24:55,502 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-25T16:24:55,503 inlined from ‘std::vector >, std::allocator > > > pfl_fold_up(std::string, int, int, int)’ at interfaces/Python/RNA_wrap.cpp:10281:20: 2023-09-25T16:24:55,503 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:55,504 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-25T16:24:55,505 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:55,505 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:24:55,506 inlined from ‘std::vector >, std::allocator > > > pfl_fold_up(std::string, int, int, int)’ at interfaces/Python/RNA_wrap.cpp:10285:22: 2023-09-25T16:24:55,507 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:55,507 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:24:55,508 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:24:55,835 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:24:55,835 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-25T16:24:55,836 inlined from ‘std::vector > my_aln_conservation_col(std::vector, std::allocator > >, vrna_md_t*, unsigned int)’ at interfaces/Python/RNA_wrap.cpp:9022:31: 2023-09-25T16:24:55,837 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:55,837 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-25T16:24:55,838 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:56,238 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:24:56,239 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-25T16:24:56,240 inlined from ‘std::vector >, std::allocator > > > vrna_fold_compound_t_bpp(vrna_fold_compound_t*)’ at interfaces/Python/RNA_wrap.cpp:14233:37, 2023-09-25T16:24:56,240 inlined from ‘PyObject* _wrap_fold_compound_bpp(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:83741:40: 2023-09-25T16:24:56,241 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:24:56,242 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-25T16:24:56,242 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:24:56,671 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:24:56,672 interfaces/Python/RNA_wrap.cpp:1084:82: warning: ‘retval5’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:24:56,672 1084 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T16:24:56,673 | ^ 2023-09-25T16:24:56,674 interfaces/Python/RNA_wrap.cpp:84356:26: note: ‘retval5’ was declared here 2023-09-25T16:24:56,675 84356 | vrna_pbacktrack_mem_t *retval5 ; 2023-09-25T16:24:56,676 | ^~~~~~~ 2023-09-25T16:24:57,668 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:24:57,669 interfaces/Python/RNA_wrap.cpp:1084:82: warning: ‘retval3’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:24:57,669 1084 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T16:24:57,670 | ^ 2023-09-25T16:24:57,677 interfaces/Python/RNA_wrap.cpp:84194:26: note: ‘retval3’ was declared here 2023-09-25T16:24:57,678 84194 | vrna_pbacktrack_mem_t *retval3 ; 2023-09-25T16:24:57,679 | ^~~~~~~ 2023-09-25T16:24:58,358 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:24:58,358 interfaces/Python/RNA_wrap.cpp:1084:82: warning: ‘retval4’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:24:58,359 1084 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T16:24:58,359 | ^ 2023-09-25T16:24:58,367 interfaces/Python/RNA_wrap.cpp:84271:26: note: ‘retval4’ was declared here 2023-09-25T16:24:58,368 84271 | vrna_pbacktrack_mem_t *retval4 ; 2023-09-25T16:24:58,368 | ^~~~~~~ 2023-09-25T16:25:00,125 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:25:00,126 inlined from ‘std::vector > vrna_fold_compound_t_path_direct(vrna_fold_compound_t*, std::string, std::string, int, vrna_path_options_s*)’ at interfaces/Python/RNA_wrap.cpp:14684:24, 2023-09-25T16:25:00,126 inlined from ‘PyObject* _wrap_fold_compound_path_direct(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:85846:48: 2023-09-25T16:25:00,127 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:00,127 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:25:00,128 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:25:00,128 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:25:00,129 inlined from ‘std::vector > vrna_fold_compound_t_path_direct(vrna_fold_compound_t*, std::string, std::string, int, vrna_path_options_s*)’ at interfaces/Python/RNA_wrap.cpp:14693:24, 2023-09-25T16:25:00,129 inlined from ‘PyObject* _wrap_fold_compound_path_direct(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:85846:48: 2023-09-25T16:25:00,130 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:00,130 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:25:00,131 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:25:00,410 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:25:00,411 inlined from ‘std::vector > vrna_fold_compound_t_path_findpath(vrna_fold_compound_t*, std::string, std::string, int, int)’ at interfaces/Python/RNA_wrap.cpp:14664:24, 2023-09-25T16:25:00,412 inlined from ‘PyObject* _wrap_fold_compound_path_findpath(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:85771:50: 2023-09-25T16:25:00,413 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:00,413 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:25:00,414 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:25:10,703 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:25:10,704 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2023-09-25T16:25:10,705 inlined from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = SwigPySequence_Cont; Seq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5636:18, 2023-09-25T16:25:10,706 inlined from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, sequence**) [with Seq = std::vector >; T = double]’ at interfaces/Python/RNA_wrap.cpp:5658:12: 2023-09-25T16:25:10,706 /usr/include/c++/12/bits/vector.tcc:364:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:10,707 364 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-09-25T16:25:10,707 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:10,708 /usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:10,708 366 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-09-25T16:25:10,709 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:11,065 In function ‘int vrna_fold_compound_t_sc_set_up(vrna_fold_compound_t*, std::vector >, unsigned int)’, 2023-09-25T16:25:11,066 inlined from ‘PyObject* _wrap_fold_compound_sc_set_up(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:79857:51: 2023-09-25T16:25:11,066 interfaces/Python/RNA_wrap.cpp:13918:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:11,067 13918 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-09-25T16:25:11,067 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:11,457 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:25:11,457 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__erase__SWIG_0(std::vector >*, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:6134:167, 2023-09-25T16:25:11,458 inlined from ‘PyObject* _wrap_DoubleVector_erase__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:23184:54, 2023-09-25T16:25:11,459 inlined from ‘PyObject* _wrap_DoubleVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23270:48: 2023-09-25T16:25:11,459 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:11,460 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T16:25:11,460 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:11,461 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:25:11,462 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__erase__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:6135:206, 2023-09-25T16:25:11,462 inlined from ‘PyObject* _wrap_DoubleVector_erase__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:23240:54, 2023-09-25T16:25:11,463 inlined from ‘PyObject* _wrap_DoubleVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23287:50: 2023-09-25T16:25:11,464 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:11,464 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T16:25:11,465 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:11,741 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:25:11,751 inlined from ‘void swig::erase(Sequence*, const typename Sequence::iterator&) [with Sequence = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4955:15, 2023-09-25T16:25:11,752 inlined from ‘void std_vector_Sl_double_Sg____delitem____SWIG_0(std::vector >*, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:6072:18, 2023-09-25T16:25:11,753 inlined from ‘PyObject* _wrap_DoubleVector___delitem____SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:22226:53, 2023-09-25T16:25:11,753 inlined from ‘PyObject* _wrap_DoubleVector___delitem__(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:22446:54: 2023-09-25T16:25:11,754 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:11,755 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T16:25:11,755 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:11,886 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:25:11,887 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__insert__SWIG_0(std::vector >*, std::vector >::iterator, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6136:212, 2023-09-25T16:25:11,887 inlined from ‘PyObject* _wrap_DoubleVector_insert__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:23682:55, 2023-09-25T16:25:11,888 inlined from ‘PyObject* _wrap_DoubleVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23775:51: 2023-09-25T16:25:11,888 /usr/include/c++/12/bits/vector.tcc:157:26: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:11,889 157 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-09-25T16:25:11,890 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:11,890 /usr/include/c++/12/bits/vector.tcc:164:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:11,891 164 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-09-25T16:25:11,892 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:11,892 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:25:11,893 inlined from ‘void std_vector_Sl_double_Sg__insert__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::size_type, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6137:213, 2023-09-25T16:25:11,893 inlined from ‘PyObject* _wrap_DoubleVector_insert__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:23741:46, 2023-09-25T16:25:11,894 inlined from ‘PyObject* _wrap_DoubleVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23799:53: 2023-09-25T16:25:11,895 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:11,896 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2023-09-25T16:25:11,896 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:12,065 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:25:12,065 inlined from ‘PyObject* _wrap_DoubleVector_resize__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:23579:21, 2023-09-25T16:25:12,066 inlined from ‘PyObject* _wrap_DoubleVector_resize(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23628:51: 2023-09-25T16:25:12,066 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:12,067 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2023-09-25T16:25:12,067 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:12,186 In function ‘int vrna_fold_compound_t_sc_add_stack__SWIG_1(vrna_fold_compound_t*, int, std::vector >, unsigned int)’, 2023-09-25T16:25:12,186 inlined from ‘PyObject* _wrap_fold_compound_sc_add_stack__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:80121:62: 2023-09-25T16:25:12,187 interfaces/Python/RNA_wrap.cpp:13955:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:12,187 13955 | transform(energies.begin(), energies.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-09-25T16:25:12,188 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:13,133 In function ‘int vrna_fold_compound_t_sc_set_stack__SWIG_0(vrna_fold_compound_t*, std::vector >, unsigned int)’, 2023-09-25T16:25:13,134 inlined from ‘PyObject* _wrap_fold_compound_sc_set_stack__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:79904:62: 2023-09-25T16:25:13,135 interfaces/Python/RNA_wrap.cpp:13923:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:13,135 13923 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-09-25T16:25:13,136 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:42,123 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {vrna_path_s}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T16:25:42,124 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:25:42,194 439 | vector<_Tp, _Alloc>:: 2023-09-25T16:25:42,247 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:42,249 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:25:42,344 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2023-09-25T16:25:42,494 inlined from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = SwigPySequence_Cont; Seq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5636:18, 2023-09-25T16:25:42,558 inlined from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, sequence**) [with Seq = std::vector >; T = vrna_path_s]’ at interfaces/Python/RNA_wrap.cpp:5658:12: 2023-09-25T16:25:42,563 /usr/include/c++/12/bits/vector.tcc:364:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:42,563 364 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-09-25T16:25:42,564 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:42,565 /usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:42,565 366 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-09-25T16:25:42,566 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:42,567 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:25:42,567 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__insert__SWIG_0(std::vector >*, std::vector >::iterator, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:7242:237, 2023-09-25T16:25:42,568 inlined from ‘PyObject* _wrap_PathVector_insert__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:42831:60, 2023-09-25T16:25:42,569 inlined from ‘PyObject* _wrap_PathVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42923:49: 2023-09-25T16:25:42,570 /usr/include/c++/12/bits/vector.tcc:157:26: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:42,570 157 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-09-25T16:25:42,571 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:42,572 /usr/include/c++/12/bits/vector.tcc:164:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:42,572 164 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-09-25T16:25:42,573 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:42,574 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:25:42,575 inlined from ‘void std_vector_Sl_vrna_path_t_Sg__insert__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::size_type, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:7243:238, 2023-09-25T16:25:42,576 inlined from ‘PyObject* _wrap_PathVector_insert__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:42891:51, 2023-09-25T16:25:42,576 inlined from ‘PyObject* _wrap_PathVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42945:51: 2023-09-25T16:25:42,577 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:42,578 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2023-09-25T16:25:42,579 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:42,600 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:25:42,601 inlined from ‘PyObject* _wrap_PathVector_resize__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:42729:21, 2023-09-25T16:25:42,601 inlined from ‘PyObject* _wrap_PathVector_resize(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42776:49: 2023-09-25T16:25:42,602 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:42,602 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2023-09-25T16:25:42,603 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:42,726 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:25:42,727 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__erase__SWIG_0(std::vector >*, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:7240:187, 2023-09-25T16:25:42,728 inlined from ‘PyObject* _wrap_PathVector_erase__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:42332:59, 2023-09-25T16:25:42,728 inlined from ‘PyObject* _wrap_PathVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42418:46: 2023-09-25T16:25:42,729 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:42,730 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T16:25:42,731 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:42,732 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:25:42,733 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__erase__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:7241:231, 2023-09-25T16:25:42,733 inlined from ‘PyObject* _wrap_PathVector_erase__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:42388:59, 2023-09-25T16:25:42,734 inlined from ‘PyObject* _wrap_PathVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42435:48: 2023-09-25T16:25:42,735 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:42,735 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T16:25:42,736 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:25:43,014 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:25:43,015 inlined from ‘void swig::erase(Sequence*, const typename Sequence::iterator&) [with Sequence = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4955:15, 2023-09-25T16:25:43,015 inlined from ‘void std_vector_Sl_vrna_path_t_Sg____delitem____SWIG_0(std::vector >*, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:7178:18, 2023-09-25T16:25:43,016 inlined from ‘PyObject* _wrap_PathVector___delitem____SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:41374:58, 2023-09-25T16:25:43,017 inlined from ‘PyObject* _wrap_PathVector___delitem__(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:41594:52: 2023-09-25T16:25:43,017 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:25:43,018 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T16:25:43,018 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:26:08,221 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/2Dfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/2Dfold.o -fopenmp 2023-09-25T16:26:08,468 src/ViennaRNA/2Dfold.c: In function ‘vrna_mfe_TwoD’: 2023-09-25T16:26:08,469 src/ViennaRNA/2Dfold.c:325:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,470 325 | if ((d1 >= ((md->circ) ? matrices->k_min_Fc : matrices->k_min_F5[length])) 2023-09-25T16:26:08,470 | ^~ 2023-09-25T16:26:08,471 src/ViennaRNA/2Dfold.c:326:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,471 326 | && (d1 <= ((md->circ) ? matrices->k_max_Fc : matrices->k_max_F5[length]))) { 2023-09-25T16:26:08,472 | ^~ 2023-09-25T16:26:08,472 src/ViennaRNA/2Dfold.c:328:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,473 328 | d2 <= ((md->circ) ? matrices->l_max_Fc[d1] : matrices->l_max_F5[length][d1]); 2023-09-25T16:26:08,473 | ^~ 2023-09-25T16:26:08,475 src/ViennaRNA/2Dfold.c: In function ‘vrna_backtrack5_TwoD’: 2023-09-25T16:26:08,476 src/ViennaRNA/2Dfold.c:400:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,477 400 | if (j < vc->params->model_details.min_loop_size + 2) 2023-09-25T16:26:08,477 | ^ 2023-09-25T16:26:08,481 src/ViennaRNA/2Dfold.c: In function ‘mfe_linear’: 2023-09-25T16:26:08,482 src/ViennaRNA/2Dfold.c:596:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,483 596 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2023-09-25T16:26:08,483 | ^~ 2023-09-25T16:26:08,484 src/ViennaRNA/2Dfold.c:596:64: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,484 596 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2023-09-25T16:26:08,485 | ^~ 2023-09-25T16:26:08,490 src/ViennaRNA/2Dfold.c:712:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,490 712 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2023-09-25T16:26:08,491 | ^~ 2023-09-25T16:26:08,491 src/ViennaRNA/2Dfold.c:712:80: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,492 712 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2023-09-25T16:26:08,492 | ^~ 2023-09-25T16:26:08,501 src/ViennaRNA/2Dfold.c:1032:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,502 1032 | if (j > turn + 2) { 2023-09-25T16:26:08,502 | ^ 2023-09-25T16:26:08,517 src/ViennaRNA/2Dfold.c:1402:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,518 1402 | for (cnt1 = seq_length; cnt1 >= seq_length - turn - 1; cnt1--) { 2023-09-25T16:26:08,519 | ^~ 2023-09-25T16:26:08,526 src/ViennaRNA/2Dfold.c: In function ‘backtrack_f5’: 2023-09-25T16:26:08,528 src/ViennaRNA/2Dfold.c:1622:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,528 1622 | if (j < turn + 2) 2023-09-25T16:26:08,529 | ^ 2023-09-25T16:26:08,531 src/ViennaRNA/2Dfold.c:1648:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,532 1648 | } else if ((k >= da) && (l >= db)) { 2023-09-25T16:26:08,532 | ^~ 2023-09-25T16:26:08,534 src/ViennaRNA/2Dfold.c:1648:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,534 1648 | } else if ((k >= da) && (l >= db)) { 2023-09-25T16:26:08,535 | ^~ 2023-09-25T16:26:08,536 src/ViennaRNA/2Dfold.c:1650:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,537 1650 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2023-09-25T16:26:08,537 | ^~ 2023-09-25T16:26:08,539 src/ViennaRNA/2Dfold.c:1650:50: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,539 1650 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2023-09-25T16:26:08,540 | ^~ 2023-09-25T16:26:08,541 src/ViennaRNA/2Dfold.c:1651:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,541 1651 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2023-09-25T16:26:08,542 | ^~ 2023-09-25T16:26:08,543 src/ViennaRNA/2Dfold.c:1651:60: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,544 1651 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2023-09-25T16:26:08,545 | ^~ 2023-09-25T16:26:08,550 src/ViennaRNA/2Dfold.c:1756:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,551 1756 | } else if ((k >= d1a) && (l >= d1b)) { 2023-09-25T16:26:08,551 | ^~ 2023-09-25T16:26:08,553 src/ViennaRNA/2Dfold.c:1756:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,553 1756 | } else if ((k >= d1a) && (l >= d1b)) { 2023-09-25T16:26:08,553 | ^~ 2023-09-25T16:26:08,555 In file included from src/ViennaRNA/2Dfold.c:17: 2023-09-25T16:26:08,555 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,556 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,556 | ^ 2023-09-25T16:26:08,556 src/ViennaRNA/2Dfold.c:1757:23: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,557 1757 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2023-09-25T16:26:08,557 | ^~~~ 2023-09-25T16:26:08,558 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:08,558 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,558 | ^~~ 2023-09-25T16:26:08,559 src/ViennaRNA/2Dfold.c:1757:23: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,559 1757 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2023-09-25T16:26:08,560 | ^~~~ 2023-09-25T16:26:08,560 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,561 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,562 | ^ 2023-09-25T16:26:08,562 src/ViennaRNA/2Dfold.c:1760:25: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,563 1760 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2023-09-25T16:26:08,564 | ^~~~ 2023-09-25T16:26:08,564 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:08,565 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,566 | ^~~ 2023-09-25T16:26:08,566 src/ViennaRNA/2Dfold.c:1760:25: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,567 1760 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2023-09-25T16:26:08,567 | ^~~~ 2023-09-25T16:26:08,568 src/ViennaRNA/2Dfold.c: In function ‘backtrack_c’: 2023-09-25T16:26:08,568 src/ViennaRNA/2Dfold.c:1864:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,569 1864 | if ((unsigned int)base_d1 == k) 2023-09-25T16:26:08,570 | ^~ 2023-09-25T16:26:08,570 src/ViennaRNA/2Dfold.c:1865:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,571 1865 | if ((unsigned int)base_d2 == l) 2023-09-25T16:26:08,571 | ^~ 2023-09-25T16:26:08,572 src/ViennaRNA/2Dfold.c:1910:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,572 1910 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2023-09-25T16:26:08,573 | ^ 2023-09-25T16:26:08,574 src/ViennaRNA/2Dfold.c:1910:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,574 1910 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2023-09-25T16:26:08,575 | ^ 2023-09-25T16:26:08,580 src/ViennaRNA/2Dfold.c:2018:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,580 2018 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2023-09-25T16:26:08,581 | ^ 2023-09-25T16:26:08,582 src/ViennaRNA/2Dfold.c:2018:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,582 2018 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2023-09-25T16:26:08,583 | ^ 2023-09-25T16:26:08,592 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m’: 2023-09-25T16:26:08,594 src/ViennaRNA/2Dfold.c:2293:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,594 2293 | if (d1 <= k && d2 <= l) { 2023-09-25T16:26:08,595 | ^~ 2023-09-25T16:26:08,596 src/ViennaRNA/2Dfold.c:2293:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,596 2293 | if (d1 <= k && d2 <= l) { 2023-09-25T16:26:08,597 | ^~ 2023-09-25T16:26:08,598 src/ViennaRNA/2Dfold.c:2294:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,599 2294 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2023-09-25T16:26:08,599 | ^~ 2023-09-25T16:26:08,601 src/ViennaRNA/2Dfold.c:2294:63: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,601 2294 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2023-09-25T16:26:08,602 | ^~ 2023-09-25T16:26:08,603 src/ViennaRNA/2Dfold.c:2295:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,603 2295 | if ((l - d2 >= l_min_M[my_iindx[i + 1] - j][k - d1]) && 2023-09-25T16:26:08,604 | ^~ 2023-09-25T16:26:08,605 src/ViennaRNA/2Dfold.c:2296:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,606 2296 | (l - d2 <= l_max_M[my_iindx[i + 1] - j][k - d1])) { 2023-09-25T16:26:08,606 | ^~ 2023-09-25T16:26:08,608 src/ViennaRNA/2Dfold.c:2310:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,608 2310 | if (d1 <= k && d2 <= l) { 2023-09-25T16:26:08,609 | ^~ 2023-09-25T16:26:08,610 src/ViennaRNA/2Dfold.c:2310:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,611 2310 | if (d1 <= k && d2 <= l) { 2023-09-25T16:26:08,611 | ^~ 2023-09-25T16:26:08,612 src/ViennaRNA/2Dfold.c:2311:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,613 2311 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2023-09-25T16:26:08,614 | ^~ 2023-09-25T16:26:08,615 src/ViennaRNA/2Dfold.c:2311:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,615 2311 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2023-09-25T16:26:08,616 | ^~ 2023-09-25T16:26:08,617 src/ViennaRNA/2Dfold.c:2312:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,617 2312 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2023-09-25T16:26:08,618 | ^~ 2023-09-25T16:26:08,619 src/ViennaRNA/2Dfold.c:2312:62: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,620 2312 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2023-09-25T16:26:08,620 | ^~ 2023-09-25T16:26:08,625 src/ViennaRNA/2Dfold.c:2364:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,625 2364 | if (d1 <= k && d2 <= l) { 2023-09-25T16:26:08,626 | ^~ 2023-09-25T16:26:08,627 src/ViennaRNA/2Dfold.c:2364:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,628 2364 | if (d1 <= k && d2 <= l) { 2023-09-25T16:26:08,628 | ^~ 2023-09-25T16:26:08,629 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,630 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,630 | ^ 2023-09-25T16:26:08,631 src/ViennaRNA/2Dfold.c:2365:55: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,631 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-09-25T16:26:08,632 | ^~~~ 2023-09-25T16:26:08,633 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:08,633 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,634 | ^~~ 2023-09-25T16:26:08,634 src/ViennaRNA/2Dfold.c:2365:55: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,635 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-09-25T16:26:08,636 | ^~~~ 2023-09-25T16:26:08,636 src/ViennaRNA/2Dfold.c:2365:52: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,637 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-09-25T16:26:08,637 | ^~ 2023-09-25T16:26:08,638 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,638 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,639 | ^ 2023-09-25T16:26:08,639 src/ViennaRNA/2Dfold.c:2368:24: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,640 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-09-25T16:26:08,641 | ^~~~ 2023-09-25T16:26:08,641 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:08,642 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,642 | ^~~ 2023-09-25T16:26:08,643 src/ViennaRNA/2Dfold.c:2368:24: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,643 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-09-25T16:26:08,644 | ^~~~ 2023-09-25T16:26:08,644 src/ViennaRNA/2Dfold.c:2368:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,644 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-09-25T16:26:08,645 | ^~ 2023-09-25T16:26:08,645 src/ViennaRNA/2Dfold.c:2369:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,645 2369 | if ((k - d1 - cnt1 >= k_min_C[my_iindx[u + 1] - j]) && 2023-09-25T16:26:08,646 | ^~ 2023-09-25T16:26:08,647 src/ViennaRNA/2Dfold.c:2370:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,647 2370 | (k - d1 - cnt1 <= k_max_C[my_iindx[u + 1] - j])) { 2023-09-25T16:26:08,648 | ^~ 2023-09-25T16:26:08,649 src/ViennaRNA/2Dfold.c:2371:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,650 2371 | if ((l - d2 - cnt2 >= l_min_C[my_iindx[u + 1] - j][k - d1 - cnt1]) && 2023-09-25T16:26:08,650 | ^~ 2023-09-25T16:26:08,651 src/ViennaRNA/2Dfold.c:2372:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,652 2372 | (l - d2 - cnt2 <= l_max_C[my_iindx[u + 1] - j][k - d1 - cnt1])) { 2023-09-25T16:26:08,653 | ^~ 2023-09-25T16:26:08,655 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m1’: 2023-09-25T16:26:08,657 src/ViennaRNA/2Dfold.c:2492:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,658 2492 | if (d1 <= k && d2 <= l) { 2023-09-25T16:26:08,658 | ^~ 2023-09-25T16:26:08,660 src/ViennaRNA/2Dfold.c:2492:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,660 2492 | if (d1 <= k && d2 <= l) { 2023-09-25T16:26:08,661 | ^~ 2023-09-25T16:26:08,662 src/ViennaRNA/2Dfold.c:2493:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,663 2493 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2023-09-25T16:26:08,663 | ^~ 2023-09-25T16:26:08,665 src/ViennaRNA/2Dfold.c:2493:51: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,665 2493 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2023-09-25T16:26:08,666 | ^~ 2023-09-25T16:26:08,667 src/ViennaRNA/2Dfold.c:2494:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,668 2494 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2023-09-25T16:26:08,668 | ^~ 2023-09-25T16:26:08,670 src/ViennaRNA/2Dfold.c:2494:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,670 2494 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2023-09-25T16:26:08,671 | ^~ 2023-09-25T16:26:08,673 src/ViennaRNA/2Dfold.c: In function ‘backtrack_fc’: 2023-09-25T16:26:08,675 src/ViennaRNA/2Dfold.c:2614:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,676 2614 | if (u < turn) 2023-09-25T16:26:08,676 | ^ 2023-09-25T16:26:08,681 src/ViennaRNA/2Dfold.c:2668:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,681 2668 | if (u < turn) 2023-09-25T16:26:08,682 | ^ 2023-09-25T16:26:08,689 src/ViennaRNA/2Dfold.c:2778:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,690 2778 | if (seq_length > 2 * turn) { 2023-09-25T16:26:08,690 | ^ 2023-09-25T16:26:08,696 src/ViennaRNA/2Dfold.c:2863:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,696 2863 | if ((k == referenceBPs1[my_iindx[1] - seq_length]) && 2023-09-25T16:26:08,696 | ^~ 2023-09-25T16:26:08,698 src/ViennaRNA/2Dfold.c:2864:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,699 2864 | (l == referenceBPs2[my_iindx[1] - seq_length])) 2023-09-25T16:26:08,699 | ^~ 2023-09-25T16:26:08,703 src/ViennaRNA/2Dfold.c:2881:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,703 2881 | if (u < turn) 2023-09-25T16:26:08,704 | ^ 2023-09-25T16:26:08,708 src/ViennaRNA/2Dfold.c:2904:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,708 2904 | if ((k >= d1) && (l >= d2)) { 2023-09-25T16:26:08,709 | ^~ 2023-09-25T16:26:08,710 src/ViennaRNA/2Dfold.c:2904:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,711 2904 | if ((k >= d1) && (l >= d2)) { 2023-09-25T16:26:08,712 | ^~ 2023-09-25T16:26:08,713 src/ViennaRNA/2Dfold.c:2905:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,714 2905 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2023-09-25T16:26:08,714 | ^~ 2023-09-25T16:26:08,716 src/ViennaRNA/2Dfold.c:2905:56: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,717 2905 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2023-09-25T16:26:08,717 | ^~ 2023-09-25T16:26:08,719 src/ViennaRNA/2Dfold.c:2906:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,719 2906 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2023-09-25T16:26:08,720 | ^~ 2023-09-25T16:26:08,722 src/ViennaRNA/2Dfold.c:2906:66: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,723 2906 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2023-09-25T16:26:08,724 | ^~ 2023-09-25T16:26:08,726 src/ViennaRNA/2Dfold.c:2932:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,726 2932 | if (u < turn) 2023-09-25T16:26:08,727 | ^ 2023-09-25T16:26:08,733 src/ViennaRNA/2Dfold.c:2975:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,734 2975 | if ((k >= d1) && (l >= d2)) { 2023-09-25T16:26:08,734 | ^~ 2023-09-25T16:26:08,736 src/ViennaRNA/2Dfold.c:2975:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,737 2975 | if ((k >= d1) && (l >= d2)) { 2023-09-25T16:26:08,737 | ^~ 2023-09-25T16:26:08,739 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,739 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,740 | ^ 2023-09-25T16:26:08,740 src/ViennaRNA/2Dfold.c:2976:54: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,741 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-09-25T16:26:08,741 | ^~~~ 2023-09-25T16:26:08,742 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:08,743 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,743 | ^~~ 2023-09-25T16:26:08,744 src/ViennaRNA/2Dfold.c:2976:54: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,744 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-09-25T16:26:08,745 | ^~~~ 2023-09-25T16:26:08,745 src/ViennaRNA/2Dfold.c:2976:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,746 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-09-25T16:26:08,747 | ^~ 2023-09-25T16:26:08,748 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,749 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,749 | ^ 2023-09-25T16:26:08,750 src/ViennaRNA/2Dfold.c:2977:62: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,750 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-09-25T16:26:08,751 | ^~~~ 2023-09-25T16:26:08,751 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:08,752 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,753 | ^~~ 2023-09-25T16:26:08,753 src/ViennaRNA/2Dfold.c:2977:62: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,754 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-09-25T16:26:08,754 | ^~~~ 2023-09-25T16:26:08,755 src/ViennaRNA/2Dfold.c:2977:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,755 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-09-25T16:26:08,756 | ^~ 2023-09-25T16:26:08,757 src/ViennaRNA/2Dfold.c:2979:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,758 2979 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2023-09-25T16:26:08,758 | ^~ 2023-09-25T16:26:08,760 src/ViennaRNA/2Dfold.c:2979:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,761 2979 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2023-09-25T16:26:08,761 | ^~ 2023-09-25T16:26:08,763 src/ViennaRNA/2Dfold.c:2980:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,764 2980 | if ((l - d2 - cnt2 >= l_min_C[pq][k - d1 - cnt1]) && 2023-09-25T16:26:08,764 | ^~ 2023-09-25T16:26:08,766 src/ViennaRNA/2Dfold.c:2981:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,767 2981 | (l - d2 - cnt2 <= l_max_C[pq][k - d1 - cnt1])) { 2023-09-25T16:26:08,767 | ^~ 2023-09-25T16:26:08,769 src/ViennaRNA/2Dfold.c:3002:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,770 3002 | if (seq_length > 2 * turn) { 2023-09-25T16:26:08,771 | ^ 2023-09-25T16:26:08,774 src/ViennaRNA/2Dfold.c:3018:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,774 3018 | if ((k >= d1) && (l >= d2)) { 2023-09-25T16:26:08,775 | ^~ 2023-09-25T16:26:08,777 src/ViennaRNA/2Dfold.c:3018:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,777 3018 | if ((k >= d1) && (l >= d2)) { 2023-09-25T16:26:08,778 | ^~ 2023-09-25T16:26:08,780 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,780 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,781 | ^ 2023-09-25T16:26:08,781 src/ViennaRNA/2Dfold.c:3020:58: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,782 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-09-25T16:26:08,782 | ^~~~ 2023-09-25T16:26:08,783 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:08,784 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,784 | ^~~ 2023-09-25T16:26:08,785 src/ViennaRNA/2Dfold.c:3020:58: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,785 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-09-25T16:26:08,786 | ^~~~ 2023-09-25T16:26:08,786 src/ViennaRNA/2Dfold.c:3020:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,787 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-09-25T16:26:08,787 | ^~ 2023-09-25T16:26:08,789 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,790 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,790 | ^ 2023-09-25T16:26:08,790 src/ViennaRNA/2Dfold.c:3023:32: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,791 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-09-25T16:26:08,791 | ^~~~ 2023-09-25T16:26:08,792 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:08,793 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,793 | ^~~ 2023-09-25T16:26:08,794 src/ViennaRNA/2Dfold.c:3023:32: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,794 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-09-25T16:26:08,795 | ^~~~ 2023-09-25T16:26:08,796 src/ViennaRNA/2Dfold.c:3023:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,796 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-09-25T16:26:08,797 | ^~ 2023-09-25T16:26:08,799 src/ViennaRNA/2Dfold.c:3024:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,799 3024 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2023-09-25T16:26:08,800 | ^~ 2023-09-25T16:26:08,802 src/ViennaRNA/2Dfold.c:3024:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,802 3024 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2023-09-25T16:26:08,803 | ^~ 2023-09-25T16:26:08,805 src/ViennaRNA/2Dfold.c:3025:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,805 3025 | if ((l - d2 - cnt2 >= l_min_M2[i + 1][k - d1 - cnt1]) && 2023-09-25T16:26:08,806 | ^~ 2023-09-25T16:26:08,807 src/ViennaRNA/2Dfold.c:3026:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,808 3026 | (l - d2 - cnt2 <= l_max_M2[i + 1][k - d1 - cnt1])) { 2023-09-25T16:26:08,809 | ^~ 2023-09-25T16:26:08,815 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m2’: 2023-09-25T16:26:08,818 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,818 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,819 | ^ 2023-09-25T16:26:08,819 src/ViennaRNA/2Dfold.c:3173:41: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,820 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-09-25T16:26:08,820 | ^~~~ 2023-09-25T16:26:08,821 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:08,822 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,822 | ^~~ 2023-09-25T16:26:08,822 src/ViennaRNA/2Dfold.c:3173:41: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,823 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-09-25T16:26:08,823 | ^~~~ 2023-09-25T16:26:08,824 src/ViennaRNA/2Dfold.c:3173:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,825 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-09-25T16:26:08,825 | ^~ 2023-09-25T16:26:08,827 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,828 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,828 | ^ 2023-09-25T16:26:08,829 src/ViennaRNA/2Dfold.c:3174:49: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,830 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-09-25T16:26:08,830 | ^~~~ 2023-09-25T16:26:08,831 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:08,831 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:08,832 | ^~~ 2023-09-25T16:26:08,832 src/ViennaRNA/2Dfold.c:3174:49: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:08,833 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-09-25T16:26:08,834 | ^~~~ 2023-09-25T16:26:08,834 src/ViennaRNA/2Dfold.c:3174:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:08,835 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-09-25T16:26:08,835 | ^~ 2023-09-25T16:26:08,837 src/ViennaRNA/2Dfold.c:3175:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,838 3175 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2023-09-25T16:26:08,838 | ^~ 2023-09-25T16:26:08,840 src/ViennaRNA/2Dfold.c:3175:65: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,841 3175 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2023-09-25T16:26:08,842 | ^~ 2023-09-25T16:26:08,844 src/ViennaRNA/2Dfold.c:3176:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,844 3176 | if ((l - d2 - cnt2 >= l_min_M1[j3][k - d1 - cnt1]) && 2023-09-25T16:26:08,845 | ^~ 2023-09-25T16:26:08,847 src/ViennaRNA/2Dfold.c:3177:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,847 3177 | (l - d2 - cnt2 <= l_max_M1[j3][k - d1 - cnt1])) { 2023-09-25T16:26:08,848 | ^~ 2023-09-25T16:26:08,857 src/ViennaRNA/2Dfold.c: In function ‘mfe_circ’: 2023-09-25T16:26:08,860 src/ViennaRNA/2Dfold.c:3557:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,861 3557 | if (u < turn) 2023-09-25T16:26:08,861 | ^ 2023-09-25T16:26:08,869 src/ViennaRNA/2Dfold.c:3631:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,870 3631 | if (u < turn) 2023-09-25T16:26:08,870 | ^ 2023-09-25T16:26:08,885 src/ViennaRNA/2Dfold.c:3796:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:08,886 3796 | if (seq_length > 2 * turn) { 2023-09-25T16:26:08,887 | ^ 2023-09-25T16:26:19,354 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/2Dpfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/2Dpfold.o -fopenmp 2023-09-25T16:26:19,591 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear’: 2023-09-25T16:26:19,591 src/ViennaRNA/2Dpfold.c:431:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,592 431 | for (i = (j > turn ? (j - turn) : 1); i <= j; i++) { 2023-09-25T16:26:19,593 | ^ 2023-09-25T16:26:19,596 src/ViennaRNA/2Dpfold.c:583:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,596 583 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:26:19,597 | ^~ 2023-09-25T16:26:19,598 src/ViennaRNA/2Dpfold.c:583:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,598 583 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:26:19,599 | ^~ 2023-09-25T16:26:19,601 src/ViennaRNA/2Dpfold.c:666:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,602 666 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T16:26:19,602 | ^~ 2023-09-25T16:26:19,603 src/ViennaRNA/2Dpfold.c:666:78: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,604 666 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T16:26:19,604 | ^~ 2023-09-25T16:26:19,606 src/ViennaRNA/2Dpfold.c:796:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,607 796 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:26:19,607 | ^~ 2023-09-25T16:26:19,608 src/ViennaRNA/2Dpfold.c:796:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,608 796 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:26:19,609 | ^~ 2023-09-25T16:26:19,610 src/ViennaRNA/2Dpfold.c:828:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,610 828 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:26:19,611 | ^~ 2023-09-25T16:26:19,611 src/ViennaRNA/2Dpfold.c:828:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,612 828 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:26:19,612 | ^~ 2023-09-25T16:26:19,616 src/ViennaRNA/2Dpfold.c:952:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,616 952 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:26:19,617 | ^~ 2023-09-25T16:26:19,617 src/ViennaRNA/2Dpfold.c:952:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,618 952 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:26:19,619 | ^~ 2023-09-25T16:26:19,620 src/ViennaRNA/2Dpfold.c:991:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,620 991 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T16:26:19,621 | ^~ 2023-09-25T16:26:19,622 src/ViennaRNA/2Dpfold.c:991:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,622 991 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T16:26:19,623 | ^~ 2023-09-25T16:26:19,626 src/ViennaRNA/2Dpfold.c:1121:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,627 1121 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:26:19,627 | ^~ 2023-09-25T16:26:19,628 src/ViennaRNA/2Dpfold.c:1121:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,629 1121 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:26:19,629 | ^~ 2023-09-25T16:26:19,632 src/ViennaRNA/2Dpfold.c:1203:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,633 1203 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T16:26:19,633 | ^~ 2023-09-25T16:26:19,634 src/ViennaRNA/2Dpfold.c:1203:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,635 1203 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T16:26:19,635 | ^~ 2023-09-25T16:26:19,643 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_circ’: 2023-09-25T16:26:19,644 src/ViennaRNA/2Dpfold.c:1631:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,645 1631 | if (u < turn) 2023-09-25T16:26:19,645 | ^ 2023-09-25T16:26:19,656 src/ViennaRNA/2Dpfold.c:1849:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,656 1849 | if (seq_length > 2 * turn - 3) { 2023-09-25T16:26:19,657 | ^ 2023-09-25T16:26:19,672 src/ViennaRNA/2Dpfold.c: In function ‘vrna_pbacktrack5_TwoD’: 2023-09-25T16:26:19,674 src/ViennaRNA/2Dpfold.c:2300:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,675 2300 | if ((d1 == referenceBPs1[sn]) 2023-09-25T16:26:19,675 | ^~ 2023-09-25T16:26:19,676 src/ViennaRNA/2Dpfold.c:2301:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,677 2301 | && (d2 == referenceBPs2[sn])) { 2023-09-25T16:26:19,677 | ^~ 2023-09-25T16:26:19,679 src/ViennaRNA/2Dpfold.c:2312:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,680 2312 | if (d1 >= da && d2 >= db) { 2023-09-25T16:26:19,680 | ^~ 2023-09-25T16:26:19,682 src/ViennaRNA/2Dpfold.c:2312:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,682 2312 | if (d1 >= da && d2 >= db) { 2023-09-25T16:26:19,683 | ^~ 2023-09-25T16:26:19,684 src/ViennaRNA/2Dpfold.c:2314:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,685 2314 | (d1 - da >= k_min_Q[my_iindx[i + 1] - length]) 2023-09-25T16:26:19,685 | ^~ 2023-09-25T16:26:19,687 src/ViennaRNA/2Dpfold.c:2315:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,687 2315 | && (d1 - da <= k_max_Q[my_iindx[i + 1] - length])) { 2023-09-25T16:26:19,688 | ^~ 2023-09-25T16:26:19,689 src/ViennaRNA/2Dpfold.c:2317:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,690 2317 | (d2 - db >= l_min_Q[my_iindx[i + 1] - length][d1 - da]) 2023-09-25T16:26:19,690 | ^~ 2023-09-25T16:26:19,692 src/ViennaRNA/2Dpfold.c:2318:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,693 2318 | && (d2 - db <= l_max_Q[my_iindx[i + 1] - length][d1 - da])) 2023-09-25T16:26:19,693 | ^~ 2023-09-25T16:26:19,696 src/ViennaRNA/2Dpfold.c:2346:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,697 2346 | if ((d1 >= da) 2023-09-25T16:26:19,697 | ^~ 2023-09-25T16:26:19,698 src/ViennaRNA/2Dpfold.c:2347:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,699 2347 | && (d2 >= db) 2023-09-25T16:26:19,700 | ^~ 2023-09-25T16:26:19,701 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-09-25T16:26:19,702 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,703 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:19,703 | ^ 2023-09-25T16:26:19,704 src/ViennaRNA/2Dpfold.c:2351:26: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:19,704 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-09-25T16:26:19,705 | ^~~~ 2023-09-25T16:26:19,705 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:19,705 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:19,706 | ^~~ 2023-09-25T16:26:19,706 src/ViennaRNA/2Dpfold.c:2351:26: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:19,707 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-09-25T16:26:19,707 | ^~~~ 2023-09-25T16:26:19,708 src/ViennaRNA/2Dpfold.c:2351:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,708 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-09-25T16:26:19,709 | ^~ 2023-09-25T16:26:19,709 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,710 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:19,710 | ^ 2023-09-25T16:26:19,711 src/ViennaRNA/2Dpfold.c:2354:28: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:19,711 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-09-25T16:26:19,712 | ^~~~ 2023-09-25T16:26:19,712 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:19,713 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:19,714 | ^~~ 2023-09-25T16:26:19,714 src/ViennaRNA/2Dpfold.c:2354:28: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:19,715 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-09-25T16:26:19,715 | ^~~~ 2023-09-25T16:26:19,716 src/ViennaRNA/2Dpfold.c:2354:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,716 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-09-25T16:26:19,717 | ^~ 2023-09-25T16:26:19,718 src/ViennaRNA/2Dpfold.c:2356:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,718 2356 | if ((d1 - da - cnt1 >= k_min_Q[my_iindx[j + 1] - length]) 2023-09-25T16:26:19,719 | ^~ 2023-09-25T16:26:19,719 src/ViennaRNA/2Dpfold.c:2357:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,720 2357 | && (d1 - da - cnt1 <= k_max_Q[my_iindx[j + 1] - length])) { 2023-09-25T16:26:19,720 | ^~ 2023-09-25T16:26:19,722 src/ViennaRNA/2Dpfold.c:2358:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,722 2358 | if ((d2 - db - cnt2 >= l_min_Q[my_iindx[j + 1] - length][d1 - da - cnt1]) 2023-09-25T16:26:19,723 | ^~ 2023-09-25T16:26:19,724 src/ViennaRNA/2Dpfold.c:2359:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,725 2359 | && (d2 - db - cnt2 <= l_max_Q[my_iindx[j + 1] - length][d1 - da - cnt1])) { 2023-09-25T16:26:19,725 | ^~ 2023-09-25T16:26:19,727 src/ViennaRNA/2Dpfold.c:2383:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,728 2383 | if (d1 >= da && d2 >= db) { 2023-09-25T16:26:19,729 | ^~ 2023-09-25T16:26:19,730 src/ViennaRNA/2Dpfold.c:2383:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,730 2383 | if (d1 >= da && d2 >= db) { 2023-09-25T16:26:19,731 | ^~ 2023-09-25T16:26:19,735 src/ViennaRNA/2Dpfold.c: In function ‘pbacktrack_circ’: 2023-09-25T16:26:19,738 src/ViennaRNA/2Dpfold.c:2542:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,738 2542 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2023-09-25T16:26:19,739 | ^~ 2023-09-25T16:26:19,740 src/ViennaRNA/2Dpfold.c:2542:83: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,741 2542 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2023-09-25T16:26:19,742 | ^~ 2023-09-25T16:26:19,748 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcH’: 2023-09-25T16:26:19,751 src/ViennaRNA/2Dpfold.c:2746:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,751 2746 | if (((cnt1 + da) == d1) 2023-09-25T16:26:19,752 | ^~ 2023-09-25T16:26:19,753 src/ViennaRNA/2Dpfold.c:2747:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,754 2747 | && ((cnt2 + db) == d2)) { 2023-09-25T16:26:19,755 | ^~ 2023-09-25T16:26:19,768 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcI’: 2023-09-25T16:26:19,770 src/ViennaRNA/2Dpfold.c:3025:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,771 3025 | if (((cnt1 + cnt3 + da) == d1) 2023-09-25T16:26:19,772 | ^~ 2023-09-25T16:26:19,773 src/ViennaRNA/2Dpfold.c:3026:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,774 3026 | && ((cnt2 + cnt4 + db) == d2)) { 2023-09-25T16:26:19,775 | ^~ 2023-09-25T16:26:19,778 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcM’: 2023-09-25T16:26:19,781 src/ViennaRNA/2Dpfold.c:3211:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,782 3211 | if (((cnt1 + cnt3 + da) == d1) 2023-09-25T16:26:19,782 | ^~ 2023-09-25T16:26:19,784 src/ViennaRNA/2Dpfold.c:3212:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,785 3212 | && ((cnt2 + cnt4 + db) == d2)) { 2023-09-25T16:26:19,786 | ^~ 2023-09-25T16:26:19,792 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm2’: 2023-09-25T16:26:19,795 src/ViennaRNA/2Dpfold.c:3383:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,796 3383 | if (((cnt1 + cnt3 + da) == d1) 2023-09-25T16:26:19,796 | ^~ 2023-09-25T16:26:19,798 src/ViennaRNA/2Dpfold.c:3384:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,799 3384 | && ((cnt2 + cnt4 + db) == d2)) { 2023-09-25T16:26:19,799 | ^~ 2023-09-25T16:26:19,808 src/ViennaRNA/2Dpfold.c: In function ‘backtrack’: 2023-09-25T16:26:19,811 src/ViennaRNA/2Dpfold.c:3578:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,812 3578 | if ((da == d1) && (db == d2)) 2023-09-25T16:26:19,812 | ^~ 2023-09-25T16:26:19,815 src/ViennaRNA/2Dpfold.c:3578:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,815 3578 | if ((da == d1) && (db == d2)) 2023-09-25T16:26:19,816 | ^~ 2023-09-25T16:26:19,822 src/ViennaRNA/2Dpfold.c:3613:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,823 3613 | if (d1 >= da && d2 >= db) { 2023-09-25T16:26:19,823 | ^~ 2023-09-25T16:26:19,826 src/ViennaRNA/2Dpfold.c:3613:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,827 3613 | if (d1 >= da && d2 >= db) { 2023-09-25T16:26:19,827 | ^~ 2023-09-25T16:26:19,829 src/ViennaRNA/2Dpfold.c:3614:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,830 3614 | if ((d1 - da >= k_min_Q_B[my_iindx[k] - l]) && 2023-09-25T16:26:19,830 | ^~ 2023-09-25T16:26:19,833 src/ViennaRNA/2Dpfold.c:3615:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,833 3615 | (d1 - da <= k_max_Q_B[my_iindx[k] - l])) { 2023-09-25T16:26:19,834 | ^~ 2023-09-25T16:26:19,836 src/ViennaRNA/2Dpfold.c:3616:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,837 3616 | if ((d2 - db >= l_min_Q_B[my_iindx[k] - l][d1 - da]) && 2023-09-25T16:26:19,837 | ^~ 2023-09-25T16:26:19,840 src/ViennaRNA/2Dpfold.c:3617:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,840 3617 | (d2 - db <= l_max_Q_B[my_iindx[k] - l][d1 - da])) { 2023-09-25T16:26:19,841 | ^~ 2023-09-25T16:26:19,851 src/ViennaRNA/2Dpfold.c:3789:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,852 3789 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-09-25T16:26:19,852 | ^~ 2023-09-25T16:26:19,855 src/ViennaRNA/2Dpfold.c:3789:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,856 3789 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-09-25T16:26:19,856 | ^~ 2023-09-25T16:26:19,859 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,859 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:19,860 | ^ 2023-09-25T16:26:19,860 src/ViennaRNA/2Dpfold.c:3790:54: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:19,861 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T16:26:19,861 | ^~~~ 2023-09-25T16:26:19,863 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:19,863 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:19,864 | ^~~ 2023-09-25T16:26:19,864 src/ViennaRNA/2Dpfold.c:3790:54: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:19,865 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T16:26:19,865 | ^~~~ 2023-09-25T16:26:19,867 src/ViennaRNA/2Dpfold.c:3790:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,867 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T16:26:19,868 | ^~ 2023-09-25T16:26:19,871 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,871 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:19,872 | ^ 2023-09-25T16:26:19,872 src/ViennaRNA/2Dpfold.c:3792:26: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:19,873 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:26:19,873 | ^~~~ 2023-09-25T16:26:19,875 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:19,876 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:19,876 | ^~~ 2023-09-25T16:26:19,877 src/ViennaRNA/2Dpfold.c:3792:26: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:19,877 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:26:19,878 | ^~~~ 2023-09-25T16:26:19,879 src/ViennaRNA/2Dpfold.c:3792:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,880 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:26:19,880 | ^~ 2023-09-25T16:26:19,883 src/ViennaRNA/2Dpfold.c:3793:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,883 3793 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2023-09-25T16:26:19,884 | ^~ 2023-09-25T16:26:19,886 src/ViennaRNA/2Dpfold.c:3793:77: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,887 3793 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2023-09-25T16:26:19,888 | ^~ 2023-09-25T16:26:19,890 src/ViennaRNA/2Dpfold.c:3794:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,891 3794 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2023-09-25T16:26:19,891 | ^~ 2023-09-25T16:26:19,894 src/ViennaRNA/2Dpfold.c:3795:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,894 3795 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) 2023-09-25T16:26:19,895 | ^~ 2023-09-25T16:26:19,898 src/ViennaRNA/2Dpfold.c:3806:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,898 3806 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-09-25T16:26:19,899 | ^~ 2023-09-25T16:26:19,902 src/ViennaRNA/2Dpfold.c:3806:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,902 3806 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-09-25T16:26:19,903 | ^~ 2023-09-25T16:26:19,906 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,906 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:19,907 | ^ 2023-09-25T16:26:19,907 src/ViennaRNA/2Dpfold.c:3807:54: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:19,907 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T16:26:19,908 | ^~~~ 2023-09-25T16:26:19,910 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:19,910 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:19,911 | ^~~ 2023-09-25T16:26:19,911 src/ViennaRNA/2Dpfold.c:3807:54: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:19,912 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T16:26:19,913 | ^~~~ 2023-09-25T16:26:19,914 src/ViennaRNA/2Dpfold.c:3807:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,914 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T16:26:19,915 | ^~ 2023-09-25T16:26:19,918 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,918 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:19,919 | ^ 2023-09-25T16:26:19,919 src/ViennaRNA/2Dpfold.c:3809:26: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:19,920 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:26:19,920 | ^~~~ 2023-09-25T16:26:19,922 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:19,922 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:19,923 | ^~~ 2023-09-25T16:26:19,924 src/ViennaRNA/2Dpfold.c:3809:26: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:19,924 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:26:19,924 | ^~~~ 2023-09-25T16:26:19,926 src/ViennaRNA/2Dpfold.c:3809:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,926 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:26:19,927 | ^~ 2023-09-25T16:26:19,929 src/ViennaRNA/2Dpfold.c:3810:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,930 3810 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && 2023-09-25T16:26:19,930 | ^~ 2023-09-25T16:26:19,933 src/ViennaRNA/2Dpfold.c:3811:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,934 3811 | (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) { 2023-09-25T16:26:19,934 | ^~ 2023-09-25T16:26:19,937 src/ViennaRNA/2Dpfold.c:3812:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,937 3812 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2023-09-25T16:26:19,938 | ^~ 2023-09-25T16:26:19,940 src/ViennaRNA/2Dpfold.c:3813:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,941 3813 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) { 2023-09-25T16:26:19,941 | ^~ 2023-09-25T16:26:19,945 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm1’: 2023-09-25T16:26:19,949 src/ViennaRNA/2Dpfold.c:3940:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,949 3940 | if (d1 >= da && d2 >= db) { 2023-09-25T16:26:19,950 | ^~ 2023-09-25T16:26:19,953 src/ViennaRNA/2Dpfold.c:3940:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,953 3940 | if (d1 >= da && d2 >= db) { 2023-09-25T16:26:19,954 | ^~ 2023-09-25T16:26:19,956 src/ViennaRNA/2Dpfold.c:3941:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,957 3941 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2023-09-25T16:26:19,958 | ^~ 2023-09-25T16:26:19,961 src/ViennaRNA/2Dpfold.c:3941:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,961 3941 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2023-09-25T16:26:19,962 | ^~ 2023-09-25T16:26:19,964 src/ViennaRNA/2Dpfold.c:3942:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,965 3942 | if ((d2 - db >= l_min_Q_B[ii - l][d1 - da]) && 2023-09-25T16:26:19,966 | ^~ 2023-09-25T16:26:19,968 src/ViennaRNA/2Dpfold.c:3943:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,969 3943 | (d2 - db <= l_max_Q_B[ii - l][d1 - da])) { 2023-09-25T16:26:19,969 | ^~ 2023-09-25T16:26:19,978 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm’: 2023-09-25T16:26:19,982 src/ViennaRNA/2Dpfold.c:4157:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,982 4157 | if (d1 >= da2 && d2 >= db2) { 2023-09-25T16:26:19,983 | ^~ 2023-09-25T16:26:19,986 src/ViennaRNA/2Dpfold.c:4157:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:19,987 4157 | if (d1 >= da2 && d2 >= db2) { 2023-09-25T16:26:19,987 | ^~ 2023-09-25T16:26:19,990 src/ViennaRNA/2Dpfold.c:4158:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,990 4158 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2023-09-25T16:26:19,991 | ^~ 2023-09-25T16:26:19,994 src/ViennaRNA/2Dpfold.c:4158:69: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,995 4158 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2023-09-25T16:26:19,995 | ^~ 2023-09-25T16:26:19,998 src/ViennaRNA/2Dpfold.c:4159:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:19,999 4159 | if ((d2 - db2 >= l_min_Q_M1[jindx[j] + k][d1 - da2]) && 2023-09-25T16:26:19,999 | ^~ 2023-09-25T16:26:20,002 src/ViennaRNA/2Dpfold.c:4160:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:20,003 4160 | (d2 - db2 <= l_max_Q_M1[jindx[j] + k][d1 - da2])) { 2023-09-25T16:26:20,003 | ^~ 2023-09-25T16:26:20,006 src/ViennaRNA/2Dpfold.c:4173:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:20,007 4173 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2023-09-25T16:26:20,007 | ^~ 2023-09-25T16:26:20,011 src/ViennaRNA/2Dpfold.c:4173:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:20,011 4173 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2023-09-25T16:26:20,012 | ^~ 2023-09-25T16:26:20,015 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:20,016 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:20,016 | ^ 2023-09-25T16:26:20,017 src/ViennaRNA/2Dpfold.c:4175:26: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:20,017 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-09-25T16:26:20,018 | ^~~~ 2023-09-25T16:26:20,019 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:20,020 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:20,021 | ^~~ 2023-09-25T16:26:20,021 src/ViennaRNA/2Dpfold.c:4175:26: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:20,022 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-09-25T16:26:20,023 | ^~~~ 2023-09-25T16:26:20,024 src/ViennaRNA/2Dpfold.c:4175:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:20,024 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-09-25T16:26:20,025 | ^~ 2023-09-25T16:26:20,028 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:20,029 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:20,029 | ^ 2023-09-25T16:26:20,030 src/ViennaRNA/2Dpfold.c:4177:28: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:20,030 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:26:20,030 | ^~~~ 2023-09-25T16:26:20,033 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:26:20,033 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:26:20,034 | ^~~ 2023-09-25T16:26:20,034 src/ViennaRNA/2Dpfold.c:4177:28: note: in expansion of macro ‘MIN2’ 2023-09-25T16:26:20,034 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:26:20,035 | ^~~~ 2023-09-25T16:26:20,037 src/ViennaRNA/2Dpfold.c:4177:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:20,038 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:26:20,038 | ^~ 2023-09-25T16:26:20,041 src/ViennaRNA/2Dpfold.c:4178:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:20,042 4178 | if ((d1 - da - cnt1 >= k_min_Q_M1[jindx[j] + k]) && 2023-09-25T16:26:20,042 | ^~ 2023-09-25T16:26:20,045 src/ViennaRNA/2Dpfold.c:4179:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:20,045 4179 | (d1 - da - cnt1 <= k_max_Q_M1[jindx[j] + k])) { 2023-09-25T16:26:20,046 | ^~ 2023-09-25T16:26:20,049 src/ViennaRNA/2Dpfold.c:4180:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:20,049 4180 | if ((d2 - db - cnt2 >= l_min_Q_M1[jindx[j] + k][d1 - da - cnt1]) && 2023-09-25T16:26:20,050 | ^~ 2023-09-25T16:26:20,053 src/ViennaRNA/2Dpfold.c:4181:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:20,054 4181 | (d2 - db - cnt2 <= l_max_Q_M1[jindx[j] + k][d1 - da - cnt1])) { 2023-09-25T16:26:20,054 | ^~ 2023-09-25T16:26:20,059 src/ViennaRNA/2Dpfold.c:4212:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:20,060 4212 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2023-09-25T16:26:20,060 | ^~ 2023-09-25T16:26:20,063 src/ViennaRNA/2Dpfold.c:4212:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:20,064 4212 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2023-09-25T16:26:20,065 | ^~ 2023-09-25T16:26:26,982 In function ‘updatePosteriorBoundaries’, 2023-09-25T16:26:26,982 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:587:21: 2023-09-25T16:26:26,984 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post_b’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:26,985 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-09-25T16:26:26,985 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T16:26:26,985 src/ViennaRNA/2Dpfold.c:467:57: note: ‘l_max_post_b’ was declared here 2023-09-25T16:26:26,986 467 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2023-09-25T16:26:26,986 | ^~~~~~~~~~~~ 2023-09-25T16:26:26,987 In function ‘updatePosteriorBoundaries’, 2023-09-25T16:26:26,987 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:587:21: 2023-09-25T16:26:26,988 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post_b’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:26,988 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-09-25T16:26:26,988 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T16:26:26,989 src/ViennaRNA/2Dpfold.c:467:42: note: ‘l_min_post_b’ was declared here 2023-09-25T16:26:26,989 467 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2023-09-25T16:26:26,990 | ^~~~~~~~~~~~ 2023-09-25T16:26:26,991 In function ‘updatePosteriorBoundaries’, 2023-09-25T16:26:26,991 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:1210:21: 2023-09-25T16:26:26,992 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:26,992 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-09-25T16:26:26,993 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T16:26:26,993 src/ViennaRNA/2Dpfold.c:1041:49: note: ‘l_max_post’ was declared here 2023-09-25T16:26:26,994 1041 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2023-09-25T16:26:26,995 | ^~~~~~~~~~ 2023-09-25T16:26:26,995 In function ‘updatePosteriorBoundaries’, 2023-09-25T16:26:26,996 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:1210:21: 2023-09-25T16:26:26,996 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:26,997 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-09-25T16:26:26,998 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T16:26:26,998 src/ViennaRNA/2Dpfold.c:1041:36: note: ‘l_min_post’ was declared here 2023-09-25T16:26:26,999 1041 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2023-09-25T16:26:26,999 | ^~~~~~~~~~ 2023-09-25T16:26:27,000 In function ‘updatePosteriorBoundaries’, 2023-09-25T16:26:27,000 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:958:17: 2023-09-25T16:26:27,001 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post_m’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:27,002 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-09-25T16:26:27,002 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T16:26:27,003 src/ViennaRNA/2Dpfold.c:711:55: note: ‘l_max_post_m’ was declared here 2023-09-25T16:26:27,004 711 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2023-09-25T16:26:27,004 | ^~~~~~~~~~~~ 2023-09-25T16:26:27,005 In function ‘updatePosteriorBoundaries’, 2023-09-25T16:26:27,006 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:958:17: 2023-09-25T16:26:27,007 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post_m’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:27,007 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-09-25T16:26:27,008 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T16:26:27,008 src/ViennaRNA/2Dpfold.c:711:40: note: ‘l_min_post_m’ was declared here 2023-09-25T16:26:27,009 711 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2023-09-25T16:26:27,009 | ^~~~~~~~~~~~ 2023-09-25T16:26:30,980 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/LPfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/LPfold.o -fopenmp 2023-09-25T16:26:31,443 src/ViennaRNA/LPfold.c: In function ‘free_dp_matrices’: 2023-09-25T16:26:31,443 src/ViennaRNA/LPfold.c:514:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:26:31,444 514 | if (n > winSize + MAXLOOP) 2023-09-25T16:26:31,444 | ^ 2023-09-25T16:26:31,447 src/ViennaRNA/LPfold.c: In function ‘rotate_constraints’: 2023-09-25T16:26:31,447 src/ViennaRNA/LPfold.c:667:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:31,448 667 | if (j + 1 <= fc->length) { 2023-09-25T16:26:31,449 | ^~ 2023-09-25T16:26:35,068 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/Lfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/Lfold.o -fopenmp 2023-09-25T16:26:35,283 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/MEA.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/MEA.o -fopenmp 2023-09-25T16:26:35,535 src/ViennaRNA/MEA.c: In function ‘prune_sort’: 2023-09-25T16:26:35,535 src/ViennaRNA/MEA.c:321:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:35,536 321 | for (i = pc->i; i <= pc->j; i++) 2023-09-25T16:26:35,537 | ^~ 2023-09-25T16:26:35,537 src/ViennaRNA/MEA.c:342:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:35,538 342 | for (i = pc->i; i <= pc->j; i++) 2023-09-25T16:26:35,539 | ^~ 2023-09-25T16:26:35,539 src/ViennaRNA/MEA.c:349:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:35,540 349 | if (pc->i > n) 2023-09-25T16:26:35,541 | ^ 2023-09-25T16:26:35,542 src/ViennaRNA/MEA.c:358:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:35,543 358 | for (i = pc->i; i <= pc->j; i++) 2023-09-25T16:26:35,544 | ^~ 2023-09-25T16:26:36,117 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/ProfileAln.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ProfileAln.o -fopenmp 2023-09-25T16:26:36,938 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/ProfileDist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ProfileDist.o -fopenmp 2023-09-25T16:26:37,242 src/ViennaRNA/ProfileDist.c: In function ‘PrfEditCost’: 2023-09-25T16:26:37,243 src/ViennaRNA/ProfileDist.c:199:10: warning: ‘dist’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:37,244 199 | return dist; 2023-09-25T16:26:37,244 | ^~~~ 2023-09-25T16:26:37,245 src/ViennaRNA/ProfileDist.c:180:11: note: ‘dist’ was declared here 2023-09-25T16:26:37,245 180 | double dist; 2023-09-25T16:26:37,246 | ^~~~ 2023-09-25T16:26:37,606 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/RNAstruct.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/RNAstruct.o -fopenmp 2023-09-25T16:26:37,764 src/ViennaRNA/RNAstruct.c: In function ‘b2Shapiro’: 2023-09-25T16:26:37,765 src/ViennaRNA/RNAstruct.c:302:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:26:37,765 302 | for (k = 0; k < strlen(tt); k++) 2023-09-25T16:26:37,766 | ^ 2023-09-25T16:26:37,767 src/ViennaRNA/RNAstruct.c:305:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:26:37,768 305 | for (k = 0; k < strlen(tt); k++) 2023-09-25T16:26:37,768 | ^ 2023-09-25T16:26:37,769 src/ViennaRNA/RNAstruct.c: In function ‘expand_Shapiro’: 2023-09-25T16:26:37,770 src/ViennaRNA/RNAstruct.c:445:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:26:37,771 445 | while (i < strlen(structure) - 1) { 2023-09-25T16:26:37,771 | ^ 2023-09-25T16:26:37,773 src/ViennaRNA/RNAstruct.c: In function ‘unexpand_aligned_F’: 2023-09-25T16:26:37,773 src/ViennaRNA/RNAstruct.c:599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:26:37,774 599 | for (i = 0, l = 0; i < strlen(align[0]); i++) { 2023-09-25T16:26:37,775 | ^ 2023-09-25T16:26:38,570 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/ali_plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ali_plex.o -fopenmp 2023-09-25T16:26:38,809 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold’: 2023-09-25T16:26:38,810 src/ViennaRNA/ali_plex.c:230:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:26:38,810 230 | if (strlen(s1[s]) != n3) 2023-09-25T16:26:38,811 | ^~ 2023-09-25T16:26:38,812 src/ViennaRNA/ali_plex.c:233:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:26:38,812 233 | if (strlen(s2[s]) != n4) 2023-09-25T16:26:38,813 | ^~ 2023-09-25T16:26:38,820 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2023-09-25T16:26:38,820 src/ViennaRNA/ali_plex.c:509:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:26:38,821 509 | if (strlen(s1[s]) != n1) 2023-09-25T16:26:38,821 | ^~ 2023-09-25T16:26:38,822 src/ViennaRNA/ali_plex.c:512:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:26:38,822 512 | if (strlen(s2[s]) != n2) 2023-09-25T16:26:38,823 | ^~ 2023-09-25T16:26:40,364 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold_XS’: 2023-09-25T16:26:40,365 src/ViennaRNA/ali_plex.c:1032:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:26:40,365 1032 | if (strlen(s1[s]) != n3) 2023-09-25T16:26:40,366 | ^~ 2023-09-25T16:26:40,366 src/ViennaRNA/ali_plex.c:1035:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:26:40,367 1035 | if (strlen(s2[s]) != n4) 2023-09-25T16:26:40,368 | ^~ 2023-09-25T16:26:40,382 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-09-25T16:26:40,383 src/ViennaRNA/ali_plex.c:1347:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:26:40,384 1347 | if (strlen(s1[s]) != n1) 2023-09-25T16:26:40,384 | ^~ 2023-09-25T16:26:40,385 src/ViennaRNA/ali_plex.c:1350:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:26:40,385 1350 | if (strlen(s2[s]) != n2) 2023-09-25T16:26:40,386 | ^~ 2023-09-25T16:26:44,588 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2023-09-25T16:26:44,589 src/ViennaRNA/ali_plex.c:950:62: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:44,590 950 | int end_q = MIN2(n2 - 10, max_pos_j + alignment_length - 1); 2023-09-25T16:26:44,590 | ^ 2023-09-25T16:26:44,591 src/ViennaRNA/ali_plex.c:466:9: note: ‘max_pos_j’ was declared here 2023-09-25T16:26:44,591 466 | int max_pos_j; 2023-09-25T16:26:44,592 | ^~~~~~~~~ 2023-09-25T16:26:44,593 src/ViennaRNA/ali_plex.c:947:57: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:44,593 947 | int begin_t = MAX2(11, max_pos - alignment_length + 1); 2023-09-25T16:26:44,594 | ^ 2023-09-25T16:26:44,595 src/ViennaRNA/ali_plex.c:465:9: note: ‘max_pos’ was declared here 2023-09-25T16:26:44,596 465 | int max_pos; /* get position of the best hit */ 2023-09-25T16:26:44,596 | ^~~~~~~ 2023-09-25T16:26:44,597 src/ViennaRNA/ali_plex.c:787:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:44,598 787 | position_j[i + delta] = min_j_colonne; 2023-09-25T16:26:44,599 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T16:26:44,599 src/ViennaRNA/ali_plex.c:468:9: note: ‘min_j_colonne’ was declared here 2023-09-25T16:26:44,600 468 | int min_j_colonne; 2023-09-25T16:26:44,601 | ^~~~~~~~~~~~~ 2023-09-25T16:26:45,842 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-09-25T16:26:45,844 src/ViennaRNA/ali_plex.c:1818:64: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:45,844 1818 | int end_q = MIN2(n2 - 10, max_pos_j + alignment_length - 1); 2023-09-25T16:26:45,845 | ^ 2023-09-25T16:26:45,845 src/ViennaRNA/ali_plex.c:1295:9: note: ‘max_pos_j’ was declared here 2023-09-25T16:26:45,846 1295 | int max_pos_j; 2023-09-25T16:26:45,846 | ^~~~~~~~~ 2023-09-25T16:26:45,847 In function ‘aliplot_max_XS’, 2023-09-25T16:26:45,847 inlined from ‘aliLduplexfold_XS’ at src/ViennaRNA/ali_plex.c:1659:3: 2023-09-25T16:26:45,848 src/ViennaRNA/ali_plex.c:1812:5: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:45,848 1812 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-09-25T16:26:45,849 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:26:45,849 1813 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-09-25T16:26:45,850 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:26:45,850 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-09-25T16:26:45,851 src/ViennaRNA/ali_plex.c:1294:9: note: ‘max_pos’ was declared here 2023-09-25T16:26:45,851 1294 | int max_pos; /* get position of the best hit */ 2023-09-25T16:26:45,852 | ^~~~~~~ 2023-09-25T16:26:45,853 src/ViennaRNA/ali_plex.c:1636:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:45,853 1636 | position_j[i + delta] = min_j_colonne; 2023-09-25T16:26:45,854 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T16:26:45,855 src/ViennaRNA/ali_plex.c:1297:9: note: ‘min_j_colonne’ was declared here 2023-09-25T16:26:45,855 1297 | int min_j_colonne; 2023-09-25T16:26:45,856 | ^~~~~~~~~~~~~ 2023-09-25T16:26:46,937 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/alifold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/alifold.o -fopenmp 2023-09-25T16:26:47,425 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/alipfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/alipfold.o -fopenmp 2023-09-25T16:26:47,667 src/ViennaRNA/alipfold.c: In function ‘wrap_alipf_fold’: 2023-09-25T16:26:47,668 src/ViennaRNA/alipfold.c:155:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:47,669 155 | for (n_seq = 0; n_seq < backward_compat_compound->n_seq; n_seq++) 2023-09-25T16:26:47,669 | ^ 2023-09-25T16:26:47,670 src/ViennaRNA/alipfold.c:166:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:47,671 166 | for (n_seq = 0; n_seq < vc->n_seq; n_seq++) { 2023-09-25T16:26:47,673 | ^ 2023-09-25T16:26:47,674 src/ViennaRNA/alipfold.c:169:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:47,674 169 | for (i = 1; i <= vc->length; i++) 2023-09-25T16:26:47,675 | ^~ 2023-09-25T16:26:47,926 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/alphabet.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/alphabet.o -fopenmp 2023-09-25T16:26:48,636 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/boltzmann_sampling.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/boltzmann_sampling.o -fopenmp 2023-09-25T16:26:48,908 In file included from src/ViennaRNA/boltzmann_sampling.c:29: 2023-09-25T16:26:48,908 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-09-25T16:26:48,909 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:48,909 224 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:26:48,910 | ^ 2023-09-25T16:26:48,910 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-09-25T16:26:48,911 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:48,912 265 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:26:48,912 | ^ 2023-09-25T16:26:48,913 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-09-25T16:26:48,914 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:48,914 320 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:26:48,915 | ^ 2023-09-25T16:26:48,916 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-09-25T16:26:48,916 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:48,917 385 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:26:48,917 | ^ 2023-09-25T16:26:48,918 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-09-25T16:26:48,919 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:48,919 414 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:26:48,920 | ^ 2023-09-25T16:26:48,921 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-09-25T16:26:48,921 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:48,922 463 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:26:48,923 | ^ 2023-09-25T16:26:48,924 In file included from src/ViennaRNA/boltzmann_sampling.c:30: 2023-09-25T16:26:48,924 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-09-25T16:26:48,925 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:48,925 73 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:26:48,926 | ^ 2023-09-25T16:26:48,926 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-09-25T16:26:48,927 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:48,927 112 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:26:48,928 | ^ 2023-09-25T16:26:48,928 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-09-25T16:26:48,929 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:48,929 143 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:26:48,930 | ^ 2023-09-25T16:26:48,930 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-09-25T16:26:48,931 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:48,931 185 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:26:48,932 | ^ 2023-09-25T16:26:48,933 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-09-25T16:26:48,933 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:48,934 224 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:26:48,934 | ^ 2023-09-25T16:26:48,937 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-09-25T16:26:48,938 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:48,938 730 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:26:48,939 | ^ 2023-09-25T16:26:48,940 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-09-25T16:26:48,941 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:26:48,941 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T16:26:48,942 | ^~ 2023-09-25T16:26:48,942 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-09-25T16:26:48,943 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:48,944 784 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:26:48,944 | ^ 2023-09-25T16:26:48,945 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-09-25T16:26:48,945 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:26:48,946 825 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:26:48,946 | ^ 2023-09-25T16:26:48,967 In file included from src/ViennaRNA/boltzmann_sampling.c:33: 2023-09-25T16:26:48,968 src/ViennaRNA/data_structures_nonred.inc: In function ‘free_all_nrll’: 2023-09-25T16:26:48,969 src/ViennaRNA/data_structures_nonred.inc:1153:7: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T16:26:48,969 1153 | int i; 2023-09-25T16:26:48,970 | ^ 2023-09-25T16:26:52,778 src/ViennaRNA/boltzmann_sampling.c: In function ‘backtrack’: 2023-09-25T16:26:52,779 src/ViennaRNA/boltzmann_sampling.c:1306:25: warning: ‘type’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:52,780 1306 | q_temp *= exp_E_IntLoop(u1, 2023-09-25T16:26:52,780 | ^~~~~~~~~~~~~~~~~ 2023-09-25T16:26:52,781 1307 | u2, 2023-09-25T16:26:52,781 | ~~~ 2023-09-25T16:26:52,782 1308 | type, 2023-09-25T16:26:52,783 | ~~~~~ 2023-09-25T16:26:52,783 1309 | type_2, 2023-09-25T16:26:52,784 | ~~~~~~~ 2023-09-25T16:26:52,784 1310 | S1[i + 1], 2023-09-25T16:26:52,785 | ~~~~~~~~~~ 2023-09-25T16:26:52,785 1311 | S1[j - 1], 2023-09-25T16:26:52,786 | ~~~~~~~~~~ 2023-09-25T16:26:52,786 1312 | S1[k - 1], 2023-09-25T16:26:52,787 | ~~~~~~~~~~ 2023-09-25T16:26:52,788 1313 | S1[l + 1], 2023-09-25T16:26:52,788 | ~~~~~~~~~~ 2023-09-25T16:26:52,789 1314 | pf_params); 2023-09-25T16:26:52,790 | ~~~~~~~~~~ 2023-09-25T16:26:52,790 src/ViennaRNA/boltzmann_sampling.c:1125:45: note: ‘type’ was declared here 2023-09-25T16:26:52,791 1125 | unsigned int **a2s, s, n_seq, n, type, type_2, *types, u1_local, u2_local; 2023-09-25T16:26:52,792 | ^~~~ 2023-09-25T16:26:54,362 In function ‘pbacktrack_circ’, 2023-09-25T16:26:54,363 inlined from ‘vrna_pbacktrack_sub_resume_cb’ at src/ViennaRNA/boltzmann_sampling.c:258:11: 2023-09-25T16:26:54,363 src/ViennaRNA/boltzmann_sampling.c:1659:32: warning: ‘type’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:54,364 1659 | q_temp *= exp_E_IntLoop(ln2 + ln3, 2023-09-25T16:26:54,364 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:26:54,365 1660 | ln1, 2023-09-25T16:26:54,365 | ~~~~ 2023-09-25T16:26:54,366 1661 | type2, 2023-09-25T16:26:54,367 | ~~~~~~ 2023-09-25T16:26:54,367 1662 | type, 2023-09-25T16:26:54,368 | ~~~~~ 2023-09-25T16:26:54,369 1663 | S1[l + 1], 2023-09-25T16:26:54,369 | ~~~~~~~~~~ 2023-09-25T16:26:54,370 1664 | S1[k - 1], 2023-09-25T16:26:54,370 | ~~~~~~~~~~ 2023-09-25T16:26:54,371 1665 | S1[i - 1], 2023-09-25T16:26:54,373 | ~~~~~~~~~~ 2023-09-25T16:26:54,374 1666 | S1[j + 1], 2023-09-25T16:26:54,375 | ~~~~~~~~~~ 2023-09-25T16:26:54,376 1667 | pf_params); 2023-09-25T16:26:54,377 | ~~~~~~~~~~ 2023-09-25T16:26:54,378 src/ViennaRNA/boltzmann_sampling.c: In function ‘vrna_pbacktrack_sub_resume_cb’: 2023-09-25T16:26:54,379 src/ViennaRNA/boltzmann_sampling.c:1524:25: note: ‘type’ was declared here 2023-09-25T16:26:54,380 1524 | unsigned int type, type2, *tt, s, n_seq, **a2s, u1_local, 2023-09-25T16:26:54,380 | ^~~~ 2023-09-25T16:26:55,073 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/bs_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/bs_wrappers.o -fopenmp 2023-09-25T16:26:55,447 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/c_plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/c_plex.o -fopenmp 2023-09-25T16:26:55,694 src/ViennaRNA/c_plex.c: In function ‘duplexfold_CXS’: 2023-09-25T16:26:55,695 src/ViennaRNA/c_plex.c:358:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:26:55,696 358 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2023-09-25T16:26:55,696 | ^~~~~~~ 2023-09-25T16:26:55,719 src/ViennaRNA/c_plex.c: In function ‘find_max_CXS’: 2023-09-25T16:26:55,720 src/ViennaRNA/c_plex.c:942:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:26:55,721 942 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-09-25T16:26:55,722 | ^~ 2023-09-25T16:26:55,724 src/ViennaRNA/c_plex.c: In function ‘plot_max_CXS’: 2023-09-25T16:26:55,725 src/ViennaRNA/c_plex.c:993:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:26:55,727 993 | if (dL <= strlen(test.structure) - l1 - 1) 2023-09-25T16:26:55,728 | ^~ 2023-09-25T16:26:55,730 src/ViennaRNA/c_plex.c: In function ‘duplexfold_C’: 2023-09-25T16:26:55,731 src/ViennaRNA/c_plex.c:1014:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:26:55,732 1014 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T16:26:55,734 | ^~ 2023-09-25T16:26:55,756 src/ViennaRNA/c_plex.c: In function ‘find_max_C’: 2023-09-25T16:26:55,758 src/ViennaRNA/c_plex.c:1622:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:26:55,758 1622 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-09-25T16:26:55,759 | ^~ 2023-09-25T16:26:55,760 src/ViennaRNA/c_plex.c: In function ‘plot_max_C’: 2023-09-25T16:26:55,761 src/ViennaRNA/c_plex.c:1676:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:26:55,762 1676 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-09-25T16:26:55,762 | ^~ 2023-09-25T16:26:58,248 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2023-09-25T16:26:58,249 src/ViennaRNA/c_plex.c:978:73: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:58,249 978 | int end_q = MIN2(n2 - 9, max_pos_j + alignment_length - 2); 2023-09-25T16:26:58,250 | ^ 2023-09-25T16:26:58,251 src/ViennaRNA/c_plex.c:533:13: note: ‘max_pos_j’ was declared here 2023-09-25T16:26:58,251 533 | int max_pos_j; 2023-09-25T16:26:58,252 | ^~~~~~~~~ 2023-09-25T16:26:58,252 In function ‘plot_max_CXS’, 2023-09-25T16:26:58,253 inlined from ‘Lduplexfold_CXS’ at src/ViennaRNA/c_plex.c:825:5: 2023-09-25T16:26:58,253 src/ViennaRNA/c_plex.c:972:5: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:58,254 972 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", max_pos - 3, max_pos_j, 2023-09-25T16:26:58,254 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:26:58,255 973 | ((double)max) / 100); 2023-09-25T16:26:58,256 | ~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:26:58,256 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2023-09-25T16:26:58,257 src/ViennaRNA/c_plex.c:532:13: note: ‘max_pos’ was declared here 2023-09-25T16:26:58,257 532 | int max_pos; /* get position of the best hit */ 2023-09-25T16:26:58,258 | ^~~~~~~ 2023-09-25T16:26:58,258 src/ViennaRNA/c_plex.c:801:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:58,259 801 | position_j[i + delta] = min_j_colonne; 2023-09-25T16:26:58,259 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T16:26:58,260 src/ViennaRNA/c_plex.c:535:13: note: ‘min_j_colonne’ was declared here 2023-09-25T16:26:58,261 535 | int min_j_colonne; 2023-09-25T16:26:58,262 | ^~~~~~~~~~~~~ 2023-09-25T16:26:59,630 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_C’: 2023-09-25T16:26:59,632 src/ViennaRNA/c_plex.c:1659:69: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:26:59,632 1659 | int begin_t = MAX2(11, max_pos - alignment_length + 1); 2023-09-25T16:26:59,633 | ^ 2023-09-25T16:26:59,633 src/ViennaRNA/c_plex.c:1271:7: note: ‘max_pos’ was declared here 2023-09-25T16:26:59,634 1271 | int max_pos; /* get position of the best hit */ 2023-09-25T16:26:59,635 | ^~~~~~~ 2023-09-25T16:27:00,583 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/centroid.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/centroid.o -fopenmp 2023-09-25T16:27:01,086 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/cofold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/cofold.o -fopenmp 2023-09-25T16:27:01,456 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/combinatorics.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/combinatorics.o -fopenmp 2023-09-25T16:27:01,793 src/ViennaRNA/combinatorics.c: In function ‘sawada_fast’: 2023-09-25T16:27:01,795 src/ViennaRNA/combinatorics.c:727:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:01,795 727 | if (content[k - 1].count == n - t + 1) { 2023-09-25T16:27:01,796 | ^~ 2023-09-25T16:27:01,797 src/ViennaRNA/combinatorics.c:728:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:01,797 728 | if ((content[k - 1].count == r[t - p]) && (n % p == 0)) 2023-09-25T16:27:01,798 | ^~ 2023-09-25T16:27:01,799 src/ViennaRNA/combinatorics.c:730:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:01,800 730 | else if (content[k - 1].count > r[t - p]) 2023-09-25T16:27:01,800 | ^ 2023-09-25T16:27:01,801 src/ViennaRNA/combinatorics.c:732:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:01,802 732 | } else if (content[0].count != (n - t + 1)) { 2023-09-25T16:27:01,802 | ^~ 2023-09-25T16:27:02,445 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/commands.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/commands.o -fopenmp 2023-09-25T16:27:02,661 src/ViennaRNA/commands.c: In function ‘parse_constraints_line’: 2023-09-25T16:27:02,662 src/ViennaRNA/commands.c:822:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:27:02,663 822 | if (pp == strlen(buf)) { 2023-09-25T16:27:02,663 | ^~ 2023-09-25T16:27:02,664 src/ViennaRNA/commands.c:830:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:27:02,664 830 | if (pp == strlen(buf)) { 2023-09-25T16:27:02,665 | ^~ 2023-09-25T16:27:02,666 src/ViennaRNA/commands.c:840:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:27:02,666 840 | if (pp == strlen(buf)) { 2023-09-25T16:27:02,667 | ^~ 2023-09-25T16:27:02,668 src/ViennaRNA/commands.c:851:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:27:02,668 851 | if (pp == strlen(buf)) { 2023-09-25T16:27:02,669 | ^~ 2023-09-25T16:27:02,669 src/ViennaRNA/commands.c:857:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:27:02,670 857 | if (pp == strlen(buf)) { 2023-09-25T16:27:02,672 | ^~ 2023-09-25T16:27:02,672 src/ViennaRNA/commands.c:869:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:27:02,673 869 | if (pp == strlen(buf)) { 2023-09-25T16:27:02,674 | ^~ 2023-09-25T16:27:02,674 src/ViennaRNA/commands.c:886:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:27:02,675 886 | if (pp == strlen(buf)) { 2023-09-25T16:27:02,676 | ^~ 2023-09-25T16:27:02,677 src/ViennaRNA/commands.c:895:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:27:02,677 895 | if (pp == strlen(buf)) { 2023-09-25T16:27:02,678 | ^~ 2023-09-25T16:27:03,362 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/concentrations.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/concentrations.o -fopenmp 2023-09-25T16:27:03,573 src/ViennaRNA/concentrations.c:229:1: warning: ‘conc_complexes’ defined but not used [-Wunused-function] 2023-09-25T16:27:03,574 229 | conc_complexes(double *L, 2023-09-25T16:27:03,574 | ^~~~~~~~~~~~~~ 2023-09-25T16:27:03,727 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/SHAPE.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/SHAPE.o -fopenmp 2023-09-25T16:27:03,946 src/ViennaRNA/constraints/SHAPE.c: In function ‘vrna_sc_add_SHAPE_deigan’: 2023-09-25T16:27:03,947 src/ViennaRNA/constraints/SHAPE.c:327:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:03,948 327 | for (i = 1; i <= vc->length; ++i) 2023-09-25T16:27:03,949 | ^~ 2023-09-25T16:27:03,950 src/ViennaRNA/constraints/SHAPE.c: In function ‘vrna_sc_add_SHAPE_deigan_ali’: 2023-09-25T16:27:03,950 src/ViennaRNA/constraints/SHAPE.c:410:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:03,952 410 | for (i = 1; i <= vc->length; i++) 2023-09-25T16:27:03,952 | ^~ 2023-09-25T16:27:03,953 src/ViennaRNA/constraints/SHAPE.c:418:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:03,954 418 | } else if (position > vc->length) { 2023-09-25T16:27:03,955 | ^ 2023-09-25T16:27:03,956 src/ViennaRNA/constraints/SHAPE.c:456:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:03,958 456 | for (gaps = 0, i = 1; i <= vc->length; i++) { 2023-09-25T16:27:03,959 | ^~ 2023-09-25T16:27:04,599 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/constraints.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/constraints.o -fopenmp 2023-09-25T16:27:04,859 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/hard.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/hard.o -fopenmp 2023-09-25T16:27:05,083 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_up’: 2023-09-25T16:27:05,084 src/ViennaRNA/constraints/hard.c:303:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:05,085 303 | if ((i <= 0) || (i > fc->length)) { 2023-09-25T16:27:05,085 | ^ 2023-09-25T16:27:05,086 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_up_batch’: 2023-09-25T16:27:05,086 src/ViennaRNA/constraints/hard.c:375:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:05,087 375 | if ((pos <= 0) || (pos > fc->length)) 2023-09-25T16:27:05,087 | ^ 2023-09-25T16:27:05,088 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp_nonspecific’: 2023-09-25T16:27:05,088 src/ViennaRNA/constraints/hard.c:455:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:05,089 455 | if ((i <= 0) || (i > vc->length)) { 2023-09-25T16:27:05,089 | ^ 2023-09-25T16:27:05,090 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp_strand’: 2023-09-25T16:27:05,090 src/ViennaRNA/constraints/hard.c:513:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:05,091 513 | ((j - i - 1) < turn)) 2023-09-25T16:27:05,091 | ^ 2023-09-25T16:27:05,092 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp’: 2023-09-25T16:27:05,092 src/ViennaRNA/constraints/hard.c:549:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:05,093 549 | if ((i <= 0) || (j <= i) || (j > vc->length)) { 2023-09-25T16:27:05,093 | ^ 2023-09-25T16:27:05,094 src/ViennaRNA/constraints/hard.c: In function ‘default_pair_constraint’: 2023-09-25T16:27:05,095 src/ViennaRNA/constraints/hard.c:727:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:05,095 727 | (j < fc->length) && 2023-09-25T16:27:05,096 | ^ 2023-09-25T16:27:05,096 src/ViennaRNA/constraints/hard.c:760:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:05,097 760 | (j < fc->length) && 2023-09-25T16:27:05,098 | ^ 2023-09-25T16:27:05,116 src/ViennaRNA/constraints/hard.c: In function ‘populate_hc_bp’: 2023-09-25T16:27:05,117 src/ViennaRNA/constraints/hard.c:1076:51: warning: variable ‘turn’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:27:05,117 1076 | unsigned int max_span, maxdist, j, k, p, n, l, turn, strand, sj, sl, actual_i, actual_j, 2023-09-25T16:27:05,118 | ^~~~ 2023-09-25T16:27:05,122 In file included from src/ViennaRNA/constraints/hard.c:18: 2023-09-25T16:27:05,123 src/ViennaRNA/constraints/hard.c: In function ‘apply_DB_constraint’: 2023-09-25T16:27:05,124 src/ViennaRNA/utils/basic.h:111:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:05,124 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-09-25T16:27:05,125 | ^ 2023-09-25T16:27:05,125 src/ViennaRNA/constraints/hard.c:1656:24: note: in expansion of macro ‘MAX2’ 2023-09-25T16:27:05,125 1656 | for (l = MAX2(j + min_loop_size, cut); l <= length; l++) { 2023-09-25T16:27:05,126 | ^~~~ 2023-09-25T16:27:05,127 src/ViennaRNA/utils/basic.h:111:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:27:05,127 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-09-25T16:27:05,128 | ^~~ 2023-09-25T16:27:05,128 src/ViennaRNA/constraints/hard.c:1656:24: note: in expansion of macro ‘MAX2’ 2023-09-25T16:27:05,128 1656 | for (l = MAX2(j + min_loop_size, cut); l <= length; l++) { 2023-09-25T16:27:05,129 | ^~~~ 2023-09-25T16:27:05,129 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:05,130 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:05,130 | ^ 2023-09-25T16:27:05,131 src/ViennaRNA/constraints/hard.c:1670:31: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:05,131 1670 | for (l = 1; l < MIN2(cut, j - min_loop_size); l++) { 2023-09-25T16:27:05,132 | ^~~~ 2023-09-25T16:27:05,132 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:27:05,132 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:05,133 | ^~~ 2023-09-25T16:27:05,133 src/ViennaRNA/constraints/hard.c:1670:31: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:05,134 1670 | for (l = 1; l < MIN2(cut, j - min_loop_size); l++) { 2023-09-25T16:27:05,134 | ^~~~ 2023-09-25T16:27:05,135 src/ViennaRNA/constraints/hard.c:1695:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:05,135 1695 | for (l = 1; l < j; l++) { 2023-09-25T16:27:05,136 | ^ 2023-09-25T16:27:05,136 src/ViennaRNA/constraints/hard.c:1709:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:05,137 1709 | for (l = j + 1; l < cut; l++) { 2023-09-25T16:27:05,138 | ^ 2023-09-25T16:27:05,138 src/ViennaRNA/constraints/hard.c:1723:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:05,139 1723 | for (l = cut; l < j; l++) { 2023-09-25T16:27:05,139 | ^ 2023-09-25T16:27:05,140 src/ViennaRNA/constraints/hard.c:1779:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:05,141 1779 | for (i = 0; i < num_bp_unspecific; i++) 2023-09-25T16:27:05,141 | ^ 2023-09-25T16:27:05,142 src/ViennaRNA/constraints/hard.c:1786:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:05,142 1786 | for (i = 0; i < num_bp; i++) 2023-09-25T16:27:05,143 | ^ 2023-09-25T16:27:05,143 src/ViennaRNA/constraints/hard.c: In function ‘hc_update_up’: 2023-09-25T16:27:05,145 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:05,145 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:05,146 | ^ 2023-09-25T16:27:05,146 src/ViennaRNA/constraints/hard.c:1873:29: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:05,147 1873 | hc->up_ext[i] = MIN2(n, 1 + hc->up_ext[i + 1]); 2023-09-25T16:27:05,147 | ^~~~ 2023-09-25T16:27:05,148 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:27:05,149 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:05,149 | ^~~ 2023-09-25T16:27:05,150 src/ViennaRNA/constraints/hard.c:1873:29: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:05,150 1873 | hc->up_ext[i] = MIN2(n, 1 + hc->up_ext[i + 1]); 2023-09-25T16:27:05,151 | ^~~~ 2023-09-25T16:27:05,151 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:05,152 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:05,152 | ^ 2023-09-25T16:27:05,152 src/ViennaRNA/constraints/hard.c:1883:28: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:05,153 1883 | hc->up_hp[i] = MIN2(n, 1 + hc->up_hp[i + 1]); 2023-09-25T16:27:05,153 | ^~~~ 2023-09-25T16:27:05,153 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:27:05,154 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:05,154 | ^~~ 2023-09-25T16:27:05,155 src/ViennaRNA/constraints/hard.c:1883:28: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:05,155 1883 | hc->up_hp[i] = MIN2(n, 1 + hc->up_hp[i + 1]); 2023-09-25T16:27:05,156 | ^~~~ 2023-09-25T16:27:05,156 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:05,157 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:05,157 | ^ 2023-09-25T16:27:05,158 src/ViennaRNA/constraints/hard.c:1893:29: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:05,158 1893 | hc->up_int[i] = MIN2(n, 1 + hc->up_int[i + 1]); 2023-09-25T16:27:05,159 | ^~~~ 2023-09-25T16:27:05,160 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:27:05,160 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:05,161 | ^~~ 2023-09-25T16:27:05,162 src/ViennaRNA/constraints/hard.c:1893:29: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:05,162 1893 | hc->up_int[i] = MIN2(n, 1 + hc->up_int[i + 1]); 2023-09-25T16:27:05,163 | ^~~~ 2023-09-25T16:27:05,163 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:05,164 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:05,164 | ^ 2023-09-25T16:27:05,165 src/ViennaRNA/constraints/hard.c:1903:28: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:05,165 1903 | hc->up_ml[i] = MIN2(n, 1 + hc->up_ml[i + 1]); 2023-09-25T16:27:05,166 | ^~~~ 2023-09-25T16:27:05,166 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:27:05,167 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:05,168 | ^~~ 2023-09-25T16:27:05,168 src/ViennaRNA/constraints/hard.c:1903:28: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:05,169 1903 | hc->up_ml[i] = MIN2(n, 1 + hc->up_ml[i + 1]); 2023-09-25T16:27:05,170 | ^~~~ 2023-09-25T16:27:08,068 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/ligand.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/ligand.o -fopenmp 2023-09-25T16:27:09,034 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod.o -fopenmp 2023-09-25T16:27:09,215 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘vrna_sc_mod’: 2023-09-25T16:27:09,216 src/ViennaRNA/constraints/sc_cb_mod.c:479:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:09,217 479 | ((msite - j - 1) >= md->min_loop_size)) { 2023-09-25T16:27:09,217 | ^~ 2023-09-25T16:27:09,218 src/ViennaRNA/constraints/sc_cb_mod.c:482:42: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:09,218 482 | if (fc->sequence_encoding[j] == pp_enc) { 2023-09-25T16:27:09,219 | ^~ 2023-09-25T16:27:09,220 src/ViennaRNA/constraints/sc_cb_mod.c:493:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:09,220 493 | ((j - msite - 1) >= md->min_loop_size)) { 2023-09-25T16:27:09,221 | ^~ 2023-09-25T16:27:09,221 src/ViennaRNA/constraints/sc_cb_mod.c:496:42: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:09,222 496 | if (fc->sequence_encoding[j] == pp_enc) { 2023-09-25T16:27:09,223 | ^~ 2023-09-25T16:27:09,223 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_stacks’: 2023-09-25T16:27:09,224 src/ViennaRNA/constraints/sc_cb_mod.c:761:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:27:09,225 761 | char nt[MAX_ALPHABET] = { 2023-09-25T16:27:09,225 | ^~ 2023-09-25T16:27:09,226 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_mismatches’: 2023-09-25T16:27:09,227 src/ViennaRNA/constraints/sc_cb_mod.c:856:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:27:09,228 856 | char nt[MAX_ALPHABET] = { 2023-09-25T16:27:09,228 | ^~ 2023-09-25T16:27:09,229 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_dangles’: 2023-09-25T16:27:09,229 src/ViennaRNA/constraints/sc_cb_mod.c:985:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:27:09,230 985 | char nt[MAX_ALPHABET] = { 2023-09-25T16:27:09,231 | ^~ 2023-09-25T16:27:09,232 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_terminal’: 2023-09-25T16:27:09,232 src/ViennaRNA/constraints/sc_cb_mod.c:1149:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:27:09,233 1149 | char nt[MAX_ALPHABET] = { 2023-09-25T16:27:09,234 | ^~ 2023-09-25T16:27:11,618 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod_parser.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod_parser.o -fopenmp 2023-09-25T16:27:12,314 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod_wrappers.o -fopenmp 2023-09-25T16:27:22,820 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/soft.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/soft.o -fopenmp 2023-09-25T16:27:23,048 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_bp’: 2023-09-25T16:27:23,049 src/ViennaRNA/constraints/soft.c:401:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:23,049 401 | (i > fc->length) || 2023-09-25T16:27:23,050 | ^ 2023-09-25T16:27:23,051 src/ViennaRNA/constraints/soft.c:403:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:23,051 403 | (j > fc->length)) { 2023-09-25T16:27:23,052 | ^ 2023-09-25T16:27:23,053 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_up’: 2023-09-25T16:27:23,054 src/ViennaRNA/constraints/soft.c:452:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:23,054 452 | if ((i < 1) || (i > fc->length)) { 2023-09-25T16:27:23,055 | ^ 2023-09-25T16:27:23,056 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_stack’: 2023-09-25T16:27:23,056 src/ViennaRNA/constraints/soft.c:547:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:23,057 547 | if ((i < 1) || (i > fc->length)) { 2023-09-25T16:27:23,058 | ^ 2023-09-25T16:27:23,058 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_stack_comparative’: 2023-09-25T16:27:23,059 src/ViennaRNA/constraints/soft.c:582:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:23,060 582 | if ((i < 1) || (i > fc->length)) { 2023-09-25T16:27:23,060 | ^ 2023-09-25T16:27:23,075 src/ViennaRNA/constraints/soft.c: In function ‘prepare_sc_stack_pf’: 2023-09-25T16:27:23,076 src/ViennaRNA/constraints/soft.c:1416:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:23,077 1416 | for (i = 0; i <= fc->length; ++i) 2023-09-25T16:27:23,078 | ^~ 2023-09-25T16:27:23,078 src/ViennaRNA/constraints/soft.c:1420:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:23,079 1420 | for (i = 1; i <= fc->length; ++i) 2023-09-25T16:27:23,080 | ^~ 2023-09-25T16:27:23,080 src/ViennaRNA/constraints/soft.c:1436:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:23,081 1436 | for (i = 0; i <= fc->a2s[s][fc->length]; i++) 2023-09-25T16:27:23,081 | ^~ 2023-09-25T16:27:23,082 src/ViennaRNA/constraints/soft.c:1440:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:23,082 1440 | for (i = 1; i <= fc->a2s[s][fc->length]; ++i) 2023-09-25T16:27:23,083 | ^~ 2023-09-25T16:27:24,548 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/soft_cb_multi.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/soft_cb_multi.o -fopenmp 2023-09-25T16:27:25,042 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/array.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/array.o -fopenmp 2023-09-25T16:27:25,225 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/basic_datastructures.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/basic_datastructures.o -fopenmp 2023-09-25T16:27:25,395 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/char_stream.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/char_stream.o -fopenmp 2023-09-25T16:27:25,577 src/ViennaRNA/datastructures/char_stream.c: In function ‘vrna_cstr_vprintf’: 2023-09-25T16:27:25,578 src/ViennaRNA/datastructures/char_stream.c:195:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:25,579 195 | if ((size_new > 0) && (l1 < SIZE_MAX) && ((SIZE_MAX - l1) > l2)) { 2023-09-25T16:27:25,579 | ^ 2023-09-25T16:27:25,580 src/ViennaRNA/datastructures/char_stream.c:195:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:25,581 195 | if ((size_new > 0) && (l1 < SIZE_MAX) && ((SIZE_MAX - l1) > l2)) { 2023-09-25T16:27:25,581 | ^ 2023-09-25T16:27:26,050 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/hash_tables.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/hash_tables.o -fopenmp 2023-09-25T16:27:26,211 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_get’: 2023-09-25T16:27:26,212 src/ViennaRNA/datastructures/hash_tables.c:126:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T16:27:26,212 126 | for (i = 0; i < entries->length; i++) { 2023-09-25T16:27:26,213 | ^ 2023-09-25T16:27:26,213 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_insert’: 2023-09-25T16:27:26,214 src/ViennaRNA/datastructures/hash_tables.c:157:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T16:27:26,214 157 | for (i = 0; i < entries->length; i++) { 2023-09-25T16:27:26,215 | ^ 2023-09-25T16:27:26,216 src/ViennaRNA/datastructures/hash_tables.c:165:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T16:27:26,216 165 | if (i >= entries->length) { 2023-09-25T16:27:26,217 | ^~ 2023-09-25T16:27:26,217 src/ViennaRNA/datastructures/hash_tables.c:166:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T16:27:26,218 166 | if (i >= entries->allocated_length) { 2023-09-25T16:27:26,219 | ^~ 2023-09-25T16:27:26,220 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_clear’: 2023-09-25T16:27:26,220 src/ViennaRNA/datastructures/hash_tables.c:204:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T16:27:26,221 204 | for (i = 0; i < entries->length; i++) { 2023-09-25T16:27:26,222 | ^ 2023-09-25T16:27:26,222 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_remove’: 2023-09-25T16:27:26,224 src/ViennaRNA/datastructures/hash_tables.c:249:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T16:27:26,224 249 | for (i = 0; i < entries->length; i++) { 2023-09-25T16:27:26,225 | ^ 2023-09-25T16:27:26,226 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_db_hash_func’: 2023-09-25T16:27:26,227 src/ViennaRNA/datastructures/hash_tables.c:339:7: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign] 2023-09-25T16:27:26,227 339 | k = ((vrna_ht_entry_db_t *)x)->structure; 2023-09-25T16:27:26,228 | ^ 2023-09-25T16:27:26,229 src/ViennaRNA/datastructures/hash_tables.c:340:39: warning: pointer targets in passing argument 1 of ‘strlen’ differ in signedness [-Wpointer-sign] 2023-09-25T16:27:26,230 340 | len = length = (unsigned int)strlen(k); 2023-09-25T16:27:26,230 | ^ 2023-09-25T16:27:26,231 | | 2023-09-25T16:27:26,232 | unsigned char * 2023-09-25T16:27:26,232 In file included from src/ViennaRNA/datastructures/hash_tables.c:6: 2023-09-25T16:27:26,233 /usr/include/string.h:407:35: note: expected ‘const char *’ but argument is of type ‘unsigned char *’ 2023-09-25T16:27:26,234 407 | extern size_t strlen (const char *__s) 2023-09-25T16:27:26,234 | ~~~~~~~~~~~~^~~ 2023-09-25T16:27:26,536 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/heap.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/heap.o -fopenmp 2023-09-25T16:27:27,023 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/lists.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/lists.o -fopenmp 2023-09-25T16:27:27,315 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/stream_output.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/stream_output.o -fopenmp 2023-09-25T16:27:27,636 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/string.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/string.o -fopenmp 2023-09-25T16:27:27,761 src/ViennaRNA/datastructures/string.c: In function ‘vrna_string_make_space_for’: 2023-09-25T16:27:27,761 src/ViennaRNA/datastructures/string.c:91:21: warning: variable ‘old_size’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:27:27,762 91 | size_t available, old_size, new_size; 2023-09-25T16:27:27,763 | ^~~~~~~~ 2023-09-25T16:27:27,876 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/dist_vars.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/dist_vars.o -fopenmp 2023-09-25T16:27:27,930 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/dp_matrices.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/dp_matrices.o -fopenmp 2023-09-25T16:27:29,925 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/duplex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/duplex.o -fopenmp 2023-09-25T16:27:30,180 src/ViennaRNA/duplex.c: In function ‘aliduplexfold_cu’: 2023-09-25T16:27:30,181 src/ViennaRNA/duplex.c:435:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:27:30,182 435 | if (strlen(s1[s]) != n1) 2023-09-25T16:27:30,182 | ^~ 2023-09-25T16:27:30,183 src/ViennaRNA/duplex.c:438:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:27:30,184 438 | if (strlen(s2[s]) != n2) 2023-09-25T16:27:30,185 | ^~ 2023-09-25T16:27:30,187 src/ViennaRNA/duplex.c: In function ‘aliduplex_subopt’: 2023-09-25T16:27:30,188 src/ViennaRNA/duplex.c:556:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:27:30,189 556 | if (strlen(s1[s]) != n1) 2023-09-25T16:27:30,190 | ^~ 2023-09-25T16:27:30,190 src/ViennaRNA/duplex.c:559:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:27:30,190 559 | if (strlen(s2[s]) != n2) 2023-09-25T16:27:30,191 | ^~ 2023-09-25T16:27:32,594 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/equilibrium_probs.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/equilibrium_probs.o -fopenmp 2023-09-25T16:27:32,902 In file included from src/ViennaRNA/equilibrium_probs.c:37: 2023-09-25T16:27:32,903 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-09-25T16:27:32,904 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,904 224 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:27:32,905 | ^ 2023-09-25T16:27:32,905 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-09-25T16:27:32,906 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,907 265 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:27:32,907 | ^ 2023-09-25T16:27:32,908 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-09-25T16:27:32,909 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,909 320 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:27:32,910 | ^ 2023-09-25T16:27:32,911 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-09-25T16:27:32,911 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,912 385 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:27:32,912 | ^ 2023-09-25T16:27:32,913 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-09-25T16:27:32,914 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,914 414 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:27:32,915 | ^ 2023-09-25T16:27:32,915 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-09-25T16:27:32,916 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,917 463 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:27:32,917 | ^ 2023-09-25T16:27:32,925 In file included from src/ViennaRNA/equilibrium_probs.c:39: 2023-09-25T16:27:32,926 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-09-25T16:27:32,926 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,927 73 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:27:32,928 | ^ 2023-09-25T16:27:32,928 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-09-25T16:27:32,929 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,929 112 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:27:32,930 | ^ 2023-09-25T16:27:32,930 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-09-25T16:27:32,931 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,931 143 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:27:32,932 | ^ 2023-09-25T16:27:32,932 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-09-25T16:27:32,933 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,933 185 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:27:32,934 | ^ 2023-09-25T16:27:32,934 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-09-25T16:27:32,935 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,935 224 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:27:32,936 | ^ 2023-09-25T16:27:32,938 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-09-25T16:27:32,939 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,939 730 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:27:32,940 | ^ 2023-09-25T16:27:32,941 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-09-25T16:27:32,942 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:32,942 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T16:27:32,943 | ^~ 2023-09-25T16:27:32,944 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-09-25T16:27:32,944 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,945 784 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:27:32,945 | ^ 2023-09-25T16:27:32,946 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-09-25T16:27:32,947 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,947 825 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:27:32,948 | ^ 2023-09-25T16:27:32,969 src/ViennaRNA/equilibrium_probs.c: In function ‘vrna_ensemble_defect_pt’: 2023-09-25T16:27:32,970 src/ViennaRNA/equilibrium_probs.c:406:14: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:32,970 406 | (pt[0] == fc->length) && 2023-09-25T16:27:32,971 | ^~ 2023-09-25T16:27:32,972 src/ViennaRNA/equilibrium_probs.c:428:22: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:32,973 428 | else if (pt[i] > i) 2023-09-25T16:27:32,973 | ^ 2023-09-25T16:27:32,982 src/ViennaRNA/equilibrium_probs.c: In function ‘get_ml_helper_arrays’: 2023-09-25T16:27:32,982 src/ViennaRNA/equilibrium_probs.c:958:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,983 958 | for (u = 0; u < domains_up->uniq_motif_count; u++) 2023-09-25T16:27:32,983 | ^ 2023-09-25T16:27:32,984 src/ViennaRNA/equilibrium_probs.c:959:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:32,984 959 | if (ml_helpers->ud_max_size < domains_up->uniq_motif_size[u]) 2023-09-25T16:27:32,985 | ^ 2023-09-25T16:27:32,985 src/ViennaRNA/equilibrium_probs.c:965:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,986 965 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-09-25T16:27:32,986 | ^~ 2023-09-25T16:27:32,986 src/ViennaRNA/equilibrium_probs.c:971:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,987 971 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-09-25T16:27:32,988 | ^~ 2023-09-25T16:27:32,988 src/ViennaRNA/equilibrium_probs.c: In function ‘free_ml_helper_arrays’: 2023-09-25T16:27:32,989 src/ViennaRNA/equilibrium_probs.c:989:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,989 989 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-09-25T16:27:32,990 | ^~ 2023-09-25T16:27:32,990 src/ViennaRNA/equilibrium_probs.c: In function ‘rotate_ml_helper_arrays_outer’: 2023-09-25T16:27:32,991 src/ViennaRNA/equilibrium_probs.c:1019:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:32,992 1019 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-09-25T16:27:32,992 | ^~ 2023-09-25T16:27:33,026 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_update_Y5’: 2023-09-25T16:27:33,028 src/ViennaRNA/equilibrium_probs.c:2281:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:33,029 2281 | if ((se[s] < l) && 2023-09-25T16:27:33,029 | ^ 2023-09-25T16:27:33,033 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_update_Y3’: 2023-09-25T16:27:33,035 src/ViennaRNA/equilibrium_probs.c:2391:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:33,035 2391 | if (start == l + 1) { 2023-09-25T16:27:33,036 | ^~ 2023-09-25T16:27:33,040 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_contrib’: 2023-09-25T16:27:33,042 src/ViennaRNA/equilibrium_probs.c:2505:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:33,042 2505 | else if (start == l + 1) 2023-09-25T16:27:33,043 | ^~ 2023-09-25T16:27:33,044 src/ViennaRNA/equilibrium_probs.c:2507:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:33,045 2507 | else if ((start > l + 1) && 2023-09-25T16:27:33,045 | ^ 2023-09-25T16:27:33,048 src/ViennaRNA/equilibrium_probs.c:2475:27: warning: variable ‘sc_split’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:27:33,048 2475 | sc_ext_exp_split sc_split; 2023-09-25T16:27:33,049 | ^~~~~~~~ 2023-09-25T16:27:33,067 src/ViennaRNA/equilibrium_probs.c: In function ‘ud_outside_mb_loops’: 2023-09-25T16:27:33,069 src/ViennaRNA/equilibrium_probs.c:3147:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:33,070 3147 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-09-25T16:27:33,070 | ^ 2023-09-25T16:27:33,086 src/ViennaRNA/equilibrium_probs.c: In function ‘ud_outside_mb_loops2’: 2023-09-25T16:27:33,089 src/ViennaRNA/equilibrium_probs.c:3443:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:33,089 3443 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-09-25T16:27:33,090 | ^ 2023-09-25T16:27:44,414 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/eval.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval.o -fopenmp 2023-09-25T16:27:44,715 src/ViennaRNA/eval.c: In function ‘energy_of_extLoop_pt’: 2023-09-25T16:27:44,715 src/ViennaRNA/eval.c:653:34: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:44,716 653 | if ((pt[i] != 0) && (pt[i] > i)) { 2023-09-25T16:27:44,717 | ^ 2023-09-25T16:27:44,722 src/ViennaRNA/eval.c: In function ‘energy_of_ext_loop_components’: 2023-09-25T16:27:44,723 src/ViennaRNA/eval.c:919:19: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:44,724 919 | if (pt[i] > i) { 2023-09-25T16:27:44,724 | ^ 2023-09-25T16:27:44,737 src/ViennaRNA/eval.c: In function ‘energy_of_ml_pt’: 2023-09-25T16:27:44,738 src/ViennaRNA/eval.c:1673:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:44,739 1673 | for (ss = 0; ss < n_seq; ss++) 2023-09-25T16:27:44,739 | ^ 2023-09-25T16:27:44,740 src/ViennaRNA/eval.c:1711:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:44,741 1711 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T16:27:44,742 | ^ 2023-09-25T16:27:44,742 src/ViennaRNA/eval.c:1719:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:44,743 1719 | for (ss = 0; ss < n_seq; ss++) 2023-09-25T16:27:44,744 | ^ 2023-09-25T16:27:44,745 src/ViennaRNA/eval.c:1741:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:44,745 1741 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T16:27:44,746 | ^ 2023-09-25T16:27:44,747 src/ViennaRNA/eval.c:1756:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:44,747 1756 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T16:27:44,748 | ^ 2023-09-25T16:27:44,749 src/ViennaRNA/eval.c:1764:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:44,749 1764 | for (ss = 0; ss < n_seq; ss++) 2023-09-25T16:27:44,750 | ^ 2023-09-25T16:27:44,750 src/ViennaRNA/eval.c:1772:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:44,751 1772 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T16:27:44,751 | ^ 2023-09-25T16:27:44,753 src/ViennaRNA/eval.c:1824:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:44,753 1824 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T16:27:44,754 | ^ 2023-09-25T16:27:44,755 src/ViennaRNA/eval.c:1841:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:44,756 1841 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T16:27:44,756 | ^ 2023-09-25T16:27:44,757 src/ViennaRNA/eval.c:1849:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:44,758 1849 | for (ss = 0; ss < n_seq; ss++) 2023-09-25T16:27:44,758 | ^ 2023-09-25T16:27:44,759 src/ViennaRNA/eval.c:1856:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:44,759 1856 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T16:27:44,760 | ^ 2023-09-25T16:27:44,763 src/ViennaRNA/eval.c:1935:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:44,764 1935 | while (p <= (unsigned int)pt[0] && pt[p] == 0) 2023-09-25T16:27:44,764 | ^~ 2023-09-25T16:27:44,766 src/ViennaRNA/eval.c:1946:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:44,766 1946 | if (p == (unsigned int)pt[0] + 1) { 2023-09-25T16:27:44,767 | ^~ 2023-09-25T16:27:44,768 src/ViennaRNA/eval.c:1962:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:44,769 1962 | if ((sn[i1] == sn[i1 + 1]) && (i1 < (unsigned int)s[0])) 2023-09-25T16:27:44,769 | ^ 2023-09-25T16:27:44,771 src/ViennaRNA/eval.c:2010:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:44,772 2010 | if (i == (unsigned int)pt[p]) 2023-09-25T16:27:44,772 | ^~ 2023-09-25T16:27:48,112 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/eval_covariance.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval_covariance.o -fopenmp 2023-09-25T16:27:48,551 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/eval_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval_wrappers.o -fopenmp 2023-09-25T16:27:49,405 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/fold.o -fopenmp 2023-09-25T16:27:50,201 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/fold_compound.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/fold_compound.o -fopenmp 2023-09-25T16:27:50,461 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_free’: 2023-09-25T16:27:50,461 src/ViennaRNA/fold_compound.c:137:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:50,462 137 | for (s = 0; s < fc->n_seq; s++) { 2023-09-25T16:27:50,462 | ^ 2023-09-25T16:27:50,463 src/ViennaRNA/fold_compound.c:156:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:50,464 156 | for (s = 0; s < fc->n_seq; s++) 2023-09-25T16:27:50,464 | ^ 2023-09-25T16:27:50,465 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_comparative2’: 2023-09-25T16:27:50,465 src/ViennaRNA/fold_compound.c:311:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:50,466 311 | } else if (length > vrna_sequence_length_max(options)) { 2023-09-25T16:27:50,467 | ^ 2023-09-25T16:27:50,467 src/ViennaRNA/fold_compound.c:318:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:27:50,468 318 | if (strlen(sequences[s]) != length) { 2023-09-25T16:27:50,469 | ^~ 2023-09-25T16:27:50,470 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_TwoD’: 2023-09-25T16:27:50,471 src/ViennaRNA/fold_compound.c:417:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:50,471 417 | } else if (length > vrna_sequence_length_max(options)) { 2023-09-25T16:27:50,472 | ^ 2023-09-25T16:27:51,213 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/gquad.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/gquad.o -fopenmp 2023-09-25T16:27:51,471 In file included from src/ViennaRNA/gquad.c:21: 2023-09-25T16:27:51,471 src/ViennaRNA/gquad.c: In function ‘get_gquad_pf_matrix_comparative’: 2023-09-25T16:27:51,472 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:51,473 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:51,474 | ^ 2023-09-25T16:27:51,474 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:51,475 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T16:27:51,476 | ^~~~ 2023-09-25T16:27:51,476 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T16:27:51,477 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T16:27:51,478 | ^~~~~~~~~~~~~~ 2023-09-25T16:27:51,478 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:27:51,479 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:51,479 | ^~~ 2023-09-25T16:27:51,480 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:51,480 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T16:27:51,481 | ^~~~ 2023-09-25T16:27:51,481 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T16:27:51,482 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T16:27:51,483 | ^~~~~~~~~~~~~~ 2023-09-25T16:27:51,483 src/ViennaRNA/gquad.c:40:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:51,484 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T16:27:51,485 | ^~ 2023-09-25T16:27:51,485 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T16:27:51,486 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T16:27:51,487 | ^~~~~~~~~~~~~~ 2023-09-25T16:27:51,487 src/ViennaRNA/gquad.c: In function ‘get_gquad_ali_matrix’: 2023-09-25T16:27:51,488 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:51,489 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:51,489 | ^ 2023-09-25T16:27:51,490 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:51,491 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T16:27:51,492 | ^~~~ 2023-09-25T16:27:51,493 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T16:27:51,493 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T16:27:51,494 | ^~~~~~~~~~~~~~ 2023-09-25T16:27:51,495 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:27:51,495 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:51,496 | ^~~ 2023-09-25T16:27:51,497 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:51,497 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T16:27:51,498 | ^~~~ 2023-09-25T16:27:51,498 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T16:27:51,499 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T16:27:51,500 | ^~~~~~~~~~~~~~ 2023-09-25T16:27:51,500 src/ViennaRNA/gquad.c:40:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:51,501 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T16:27:51,502 | ^~ 2023-09-25T16:27:51,502 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T16:27:51,503 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T16:27:51,503 | ^~~~~~~~~~~~~~ 2023-09-25T16:27:51,504 src/ViennaRNA/gquad.c: In function ‘E_gquad_ali_penalty’: 2023-09-25T16:27:51,505 src/ViennaRNA/gquad.c:1338:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:51,506 1338 | if (mm[1] > P->gquadLayerMismatchMax) 2023-09-25T16:27:51,507 | ^ 2023-09-25T16:27:51,507 src/ViennaRNA/gquad.c: In function ‘exp_E_gquad_ali_penalty’: 2023-09-25T16:27:51,508 src/ViennaRNA/gquad.c:1357:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:51,508 1357 | if (mm[1] > pf->gquadLayerMismatchMax) 2023-09-25T16:27:51,509 | ^ 2023-09-25T16:27:51,509 src/ViennaRNA/gquad.c: In function ‘count_gquad_layer_mismatches’: 2023-09-25T16:27:51,510 src/ViennaRNA/gquad.c:1439:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:51,510 1439 | if (mismatch >= 2 * (L - 1)) 2023-09-25T16:27:51,511 | ^~ 2023-09-25T16:27:53,466 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/grammar.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/grammar.o -fopenmp 2023-09-25T16:27:53,768 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/heat_capacity.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/heat_capacity.o -fopenmp 2023-09-25T16:27:54,154 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/inverse.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/inverse.o -fopenmp 2023-09-25T16:27:54,377 src/ViennaRNA/inverse.c: In function ‘adaptive_walk’: 2023-09-25T16:27:54,378 src/ViennaRNA/inverse.c:114:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:27:54,379 114 | if (strlen(target) != len) 2023-09-25T16:27:54,379 | ^~ 2023-09-25T16:27:54,384 src/ViennaRNA/inverse.c: In function ‘make_ptable’: 2023-09-25T16:27:54,384 src/ViennaRNA/inverse.c:340:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:27:54,385 340 | for (i = 0; i < strlen(structure); i++) { 2023-09-25T16:27:54,386 | ^ 2023-09-25T16:27:54,386 src/ViennaRNA/inverse.c: In function ‘inverse_fold’: 2023-09-25T16:27:54,387 src/ViennaRNA/inverse.c:392:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:27:54,388 392 | if (strlen(start) != len) 2023-09-25T16:27:54,389 | ^~ 2023-09-25T16:27:54,391 src/ViennaRNA/inverse.c: In function ‘make_start’: 2023-09-25T16:27:54,391 src/ViennaRNA/inverse.c:514:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:27:54,392 514 | for (i = 0; i < strlen(start); i++) 2023-09-25T16:27:54,393 | ^ 2023-09-25T16:27:54,394 src/ViennaRNA/inverse.c:516:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:27:54,395 516 | for (i = 0; i < strlen(symbolset); i++) 2023-09-25T16:27:54,396 | ^ 2023-09-25T16:27:55,269 src/ViennaRNA/inverse.c: In function ‘inverse_fold’: 2023-09-25T16:27:55,269 src/ViennaRNA/inverse.c:369:5: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2023-09-25T16:27:55,270 369 | strncpy(wstruct, structure + i, j - i + 1); \ 2023-09-25T16:27:55,270 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:27:55,271 src/ViennaRNA/inverse.c:423:7: note: in expansion of macro ‘WALK’ 2023-09-25T16:27:55,272 423 | WALK(0, len - 1); 2023-09-25T16:27:55,272 | ^~~~ 2023-09-25T16:27:55,273 src/ViennaRNA/inverse.c:391:9: note: length computed here 2023-09-25T16:27:55,273 391 | len = strlen(structure); 2023-09-25T16:27:55,274 | ^~~~~~~~~~~~~~~~~ 2023-09-25T16:27:55,522 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/io/file_formats.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/file_formats.o -fopenmp 2023-09-25T16:27:55,748 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect’: 2023-09-25T16:27:55,749 src/ViennaRNA/io/file_formats.c:202:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:27:55,750 202 | for (i = 0; i < strlen(seq) - 1; i++) { 2023-09-25T16:27:55,750 | ^ 2023-09-25T16:27:55,756 src/ViennaRNA/io/file_formats.c: In function ‘vrna_extract_record_rest_structure’: 2023-09-25T16:27:55,757 src/ViennaRNA/io/file_formats.c:600:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:55,758 600 | if ((length > 0) && (r - 1 == length)) 2023-09-25T16:27:55,758 | ^~ 2023-09-25T16:27:55,768 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2023-09-25T16:27:55,769 src/ViennaRNA/io/file_formats.c:919:29: warning: variable ‘tok4’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:27:55,770 919 | long tok1, tok3, tok4, tok5, tok6; 2023-09-25T16:27:55,771 | ^~~~ 2023-09-25T16:27:56,510 src/ViennaRNA/io/file_formats.c:1056:12: warning: ‘tok6’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:27:56,511 1056 | if (!process_ct_nt_line(ct_entry, tok1, tok2, tok3, tok5, tok6)) 2023-09-25T16:27:56,511 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:27:56,512 src/ViennaRNA/io/file_formats.c:919:41: note: ‘tok6’ was declared here 2023-09-25T16:27:56,512 919 | long tok1, tok3, tok4, tok5, tok6; 2023-09-25T16:27:56,513 | ^~~~ 2023-09-25T16:27:56,513 src/ViennaRNA/io/file_formats.c:1056:12: warning: ‘tok5’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:27:56,514 1056 | if (!process_ct_nt_line(ct_entry, tok1, tok2, tok3, tok5, tok6)) 2023-09-25T16:27:56,514 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:27:56,515 src/ViennaRNA/io/file_formats.c:919:35: note: ‘tok5’ was declared here 2023-09-25T16:27:56,516 919 | long tok1, tok3, tok4, tok5, tok6; 2023-09-25T16:27:56,516 | ^~~~ 2023-09-25T16:27:56,517 In function ‘process_ct_nt_line’, 2023-09-25T16:27:56,517 inlined from ‘vrna_file_connect_read_record’ at src/ViennaRNA/io/file_formats.c:1056:12: 2023-09-25T16:27:56,518 src/ViennaRNA/io/file_formats.c:1236:22: warning: ‘tok3’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:27:56,519 1236 | (predecessor == 0)) { 2023-09-25T16:27:56,519 | ~~~~~~~~~~~~~^~~~~ 2023-09-25T16:27:56,520 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2023-09-25T16:27:56,520 src/ViennaRNA/io/file_formats.c:919:23: note: ‘tok3’ was declared here 2023-09-25T16:27:56,521 919 | long tok1, tok3, tok4, tok5, tok6; 2023-09-25T16:27:56,521 | ^~~~ 2023-09-25T16:27:56,522 In function ‘process_ct_nt_line’, 2023-09-25T16:27:56,522 inlined from ‘vrna_file_connect_read_record’ at src/ViennaRNA/io/file_formats.c:1056:12: 2023-09-25T16:27:56,523 src/ViennaRNA/io/file_formats.c:1242:43: warning: ‘tok2’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:27:56,523 1242 | data->sequence[data->sequence_pos++] = nucleotide; 2023-09-25T16:27:56,524 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:27:56,524 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2023-09-25T16:27:56,525 src/ViennaRNA/io/file_formats.c:916:33: note: ‘tok2’ was declared here 2023-09-25T16:27:56,525 916 | char c, *line, *end, tok2, **tok, **ptr; 2023-09-25T16:27:56,526 | ^~~~ 2023-09-25T16:27:56,753 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/io/file_formats_msa.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/file_formats_msa.o -fopenmp 2023-09-25T16:27:56,977 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_stockholm_alignment’: 2023-09-25T16:27:56,978 src/ViennaRNA/io/file_formats_msa.c:652:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:27:56,979 652 | for (i = 0; i < strlen(tmp_seq); i++) 2023-09-25T16:27:56,980 | ^ 2023-09-25T16:27:56,984 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_clustal_alignment’: 2023-09-25T16:27:56,984 src/ViennaRNA/io/file_formats_msa.c:901:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:27:56,985 901 | for (i = 0; i < strlen(seq); i++) 2023-09-25T16:27:56,985 | ^ 2023-09-25T16:27:57,858 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/io/io_utils.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/io_utils.o -fopenmp 2023-09-25T16:27:58,225 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/findpath.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/findpath.o -fopenmp 2023-09-25T16:27:59,041 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/move.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/move.o -fopenmp 2023-09-25T16:27:59,351 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/neighbor.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/neighbor.o -fopenmp 2023-09-25T16:27:59,526 In file included from src/ViennaRNA/pair_mat.h:5, 2023-09-25T16:27:59,527 from src/ViennaRNA/landscape/neighbor.c:6: 2023-09-25T16:27:59,527 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_right’: 2023-09-25T16:27:59,528 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:59,529 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:59,529 | ^ 2023-09-25T16:27:59,530 src/ViennaRNA/landscape/neighbor.c:362:17: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:59,530 362 | int length = MIN2(vc->length + 1, end); 2023-09-25T16:27:59,531 | ^~~~ 2023-09-25T16:27:59,531 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:27:59,532 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:59,532 | ^~~ 2023-09-25T16:27:59,533 src/ViennaRNA/landscape/neighbor.c:362:17: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:59,533 362 | int length = MIN2(vc->length + 1, end); 2023-09-25T16:27:59,534 | ^~~~ 2023-09-25T16:27:59,535 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_i_from_right’: 2023-09-25T16:27:59,535 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:27:59,536 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:59,536 | ^ 2023-09-25T16:27:59,537 src/ViennaRNA/landscape/neighbor.c:490:17: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:59,538 490 | int length = MIN2(vc->length, end); 2023-09-25T16:27:59,539 | ^~~~ 2023-09-25T16:27:59,539 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:27:59,540 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:27:59,541 | ^~~ 2023-09-25T16:27:59,541 src/ViennaRNA/landscape/neighbor.c:490:17: note: in expansion of macro ‘MIN2’ 2023-09-25T16:27:59,542 490 | int length = MIN2(vc->length, end); 2023-09-25T16:27:59,543 | ^~~~ 2023-09-25T16:27:59,552 src/ViennaRNA/landscape/neighbor.c: In function ‘move_nxt_val_bp_right’: 2023-09-25T16:27:59,553 src/ViennaRNA/landscape/neighbor.c:1709:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:27:59,553 1709 | while (j <= length && pt[j] > j) // '(' 2023-09-25T16:27:59,554 | ^~ 2023-09-25T16:27:59,555 src/ViennaRNA/landscape/neighbor.c:1711:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:27:59,555 1711 | if (j > length || (pt[j] <= j && pt[j] > 0)) // ')' /* here, the current loop ends */ 2023-09-25T16:27:59,556 | ^ 2023-09-25T16:27:59,557 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpins’: 2023-09-25T16:27:59,557 src/ViennaRNA/landscape/neighbor.c:1739:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:59,558 1739 | for (i = 1; i <= vc->length; i++) 2023-09-25T16:27:59,558 | ^~ 2023-09-25T16:27:59,559 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpdel’: 2023-09-25T16:27:59,560 src/ViennaRNA/landscape/neighbor.c:1824:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:59,561 1824 | for (i = 1; i <= vc->length; i++) 2023-09-25T16:27:59,562 | ^~ 2023-09-25T16:27:59,563 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpshift’: 2023-09-25T16:27:59,564 src/ViennaRNA/landscape/neighbor.c:1905:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:59,565 1905 | for (i = 1; i <= vc->length; i++) 2023-09-25T16:27:59,565 | ^~ 2023-09-25T16:27:59,566 src/ViennaRNA/landscape/neighbor.c:1917:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:59,567 1917 | if (j < vc->length) { 2023-09-25T16:27:59,567 | ^ 2023-09-25T16:27:59,568 src/ViennaRNA/landscape/neighbor.c:1919:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:27:59,568 1919 | if (k >= 1 && k < vc->length && k != i - 1 && pt_tmp[k + 1] == 0 && 2023-09-25T16:27:59,569 | ^ 2023-09-25T16:28:03,108 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/walk.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/walk.o -fopenmp 2023-09-25T16:28:03,279 src/ViennaRNA/landscape/walk.c:140:1: warning: ‘isShift’ defined but not used [-Wunused-function] 2023-09-25T16:28:03,280 140 | isShift(vrna_move_t *m) 2023-09-25T16:28:03,281 | ^~~~~~~ 2023-09-25T16:28:03,281 In file included from src/ViennaRNA/landscape/walk.c:24: 2023-09-25T16:28:03,282 src/ViennaRNA/landscape/local_neighbors.inc:70:1: warning: ‘free_incremental_movelist’ defined but not used [-Wunused-function] 2023-09-25T16:28:03,283 70 | free_incremental_movelist(struct movelist *m) 2023-09-25T16:28:03,283 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:28:03,284 src/ViennaRNA/landscape/local_neighbors.inc:52:1: warning: ‘init_incremental_movelist’ defined but not used [-Wunused-function] 2023-09-25T16:28:03,285 52 | init_incremental_movelist(unsigned int n) 2023-09-25T16:28:03,285 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:28:03,286 src/ViennaRNA/landscape/local_neighbors.inc:17:1: warning: ‘add_to_incremental_move_list’ defined but not used [-Wunused-function] 2023-09-25T16:28:03,286 17 | add_to_incremental_move_list(vrna_fold_compound_t *fc, 2023-09-25T16:28:03,287 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:28:03,731 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/external.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/external.o -fopenmp 2023-09-25T16:28:04,000 In file included from src/ViennaRNA/loops/external.c:36: 2023-09-25T16:28:04,000 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-09-25T16:28:04,001 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,001 865 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:04,002 | ^ 2023-09-25T16:28:04,002 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-09-25T16:28:04,003 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,003 898 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:04,004 | ^ 2023-09-25T16:28:04,004 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-09-25T16:28:04,005 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,006 969 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:04,006 | ^ 2023-09-25T16:28:04,007 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-09-25T16:28:04,007 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,007 993 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:04,008 | ^ 2023-09-25T16:28:04,009 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-09-25T16:28:04,009 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,010 1121 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:04,011 | ^ 2023-09-25T16:28:04,011 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-09-25T16:28:04,012 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,013 1145 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:04,013 | ^ 2023-09-25T16:28:04,014 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-09-25T16:28:04,014 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,015 1292 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:04,016 | ^ 2023-09-25T16:28:04,016 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-09-25T16:28:04,017 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,018 1320 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:04,018 | ^ 2023-09-25T16:28:04,019 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-09-25T16:28:04,019 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,020 1348 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:04,021 | ^ 2023-09-25T16:28:04,021 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-09-25T16:28:04,022 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,023 1404 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:04,023 | ^ 2023-09-25T16:28:04,024 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-09-25T16:28:04,024 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,025 1426 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:04,025 | ^ 2023-09-25T16:28:04,025 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-09-25T16:28:04,026 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,026 1450 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:04,027 | ^ 2023-09-25T16:28:04,027 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-09-25T16:28:04,028 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,029 1596 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:04,029 | ^ 2023-09-25T16:28:04,030 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-09-25T16:28:04,030 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,031 1628 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:04,031 | ^ 2023-09-25T16:28:04,032 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-09-25T16:28:04,033 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,033 1677 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:04,034 | ^ 2023-09-25T16:28:04,035 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-09-25T16:28:04,035 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,036 1698 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:04,037 | ^ 2023-09-25T16:28:04,047 In file included from src/ViennaRNA/loops/external.c:14: 2023-09-25T16:28:04,047 src/ViennaRNA/loops/external.c: In function ‘f3_get_stem_contributions_d0’: 2023-09-25T16:28:04,048 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,049 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:28:04,049 | ^ 2023-09-25T16:28:04,050 src/ViennaRNA/loops/external.c:1000:11: note: in expansion of macro ‘MIN2’ 2023-09-25T16:28:04,051 1000 | max_j = MIN2(length - 1, i + maxdist); 2023-09-25T16:28:04,051 | ^~~~ 2023-09-25T16:28:04,052 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:28:04,052 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:28:04,053 | ^~~ 2023-09-25T16:28:04,054 src/ViennaRNA/loops/external.c:1000:11: note: in expansion of macro ‘MIN2’ 2023-09-25T16:28:04,054 1000 | max_j = MIN2(length - 1, i + maxdist); 2023-09-25T16:28:04,055 | ^~~~ 2023-09-25T16:28:04,056 src/ViennaRNA/loops/external.c:1070:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:04,056 1070 | if (length <= i + maxdist) { 2023-09-25T16:28:04,056 | ^~ 2023-09-25T16:28:09,381 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/external_bt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/external_bt.o -fopenmp 2023-09-25T16:28:09,653 In file included from src/ViennaRNA/loops/external_bt.c:34: 2023-09-25T16:28:09,654 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-09-25T16:28:09,654 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:09,655 865 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:09,656 | ^ 2023-09-25T16:28:09,656 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-09-25T16:28:09,657 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:09,657 898 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:09,658 | ^ 2023-09-25T16:28:09,658 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-09-25T16:28:09,659 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:09,660 969 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:09,660 | ^ 2023-09-25T16:28:09,661 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-09-25T16:28:09,661 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:09,662 993 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:09,662 | ^ 2023-09-25T16:28:09,663 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-09-25T16:28:09,664 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:09,664 1121 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:09,665 | ^ 2023-09-25T16:28:09,665 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-09-25T16:28:09,666 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:09,667 1145 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:09,667 | ^ 2023-09-25T16:28:09,668 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-09-25T16:28:09,669 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:09,669 1292 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:09,670 | ^ 2023-09-25T16:28:09,670 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-09-25T16:28:09,671 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:09,672 1320 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:09,673 | ^ 2023-09-25T16:28:09,673 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-09-25T16:28:09,674 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:09,674 1348 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:09,675 | ^ 2023-09-25T16:28:09,675 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-09-25T16:28:09,675 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:09,676 1404 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:09,676 | ^ 2023-09-25T16:28:09,677 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-09-25T16:28:09,677 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:09,678 1426 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:09,678 | ^ 2023-09-25T16:28:09,679 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-09-25T16:28:09,679 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:09,680 1450 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:09,681 | ^ 2023-09-25T16:28:09,681 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-09-25T16:28:09,682 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:09,683 1596 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:09,683 | ^ 2023-09-25T16:28:09,684 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-09-25T16:28:09,685 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:09,685 1628 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:09,686 | ^ 2023-09-25T16:28:09,687 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-09-25T16:28:09,687 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:09,688 1677 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:09,689 | ^ 2023-09-25T16:28:09,689 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-09-25T16:28:09,690 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:09,690 1698 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:09,691 | ^ 2023-09-25T16:28:12,183 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/external_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/external_pf.o -fopenmp 2023-09-25T16:28:12,458 In file included from src/ViennaRNA/loops/external_pf.c:32: 2023-09-25T16:28:12,459 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-09-25T16:28:12,459 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:12,460 224 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:12,460 | ^ 2023-09-25T16:28:12,461 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-09-25T16:28:12,462 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:12,462 265 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:12,463 | ^ 2023-09-25T16:28:12,463 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-09-25T16:28:12,464 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:12,464 320 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:12,465 | ^ 2023-09-25T16:28:12,465 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-09-25T16:28:12,466 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:12,466 385 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:12,467 | ^ 2023-09-25T16:28:12,467 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-09-25T16:28:12,468 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:12,469 414 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:12,469 | ^ 2023-09-25T16:28:12,470 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-09-25T16:28:12,470 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:12,471 463 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:12,472 | ^ 2023-09-25T16:28:12,472 src/ViennaRNA/loops/external_pf.c: In function ‘vrna_exp_E_ext_fast_init’: 2023-09-25T16:28:12,473 src/ViennaRNA/loops/external_pf.c:160:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:12,474 160 | for (u = 0; u < domains_up->uniq_motif_count; u++) 2023-09-25T16:28:12,474 | ^ 2023-09-25T16:28:12,475 src/ViennaRNA/loops/external_pf.c:161:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:12,476 161 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-09-25T16:28:12,476 | ^ 2023-09-25T16:28:12,477 src/ViennaRNA/loops/external_pf.c:167:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:12,477 167 | for (u = 0; u <= ud_max_size; u++) 2023-09-25T16:28:12,478 | ^~ 2023-09-25T16:28:12,479 src/ViennaRNA/loops/external_pf.c: In function ‘vrna_exp_E_ext_fast’: 2023-09-25T16:28:12,480 src/ViennaRNA/loops/external_pf.c:270:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:12,480 270 | } else if (j > fc->length) { 2023-09-25T16:28:12,481 | ^ 2023-09-25T16:28:12,481 src/ViennaRNA/loops/external_pf.c: In function ‘reduce_ext_stem_fast’: 2023-09-25T16:28:12,482 src/ViennaRNA/loops/external_pf.c:412:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:12,482 412 | s3 = (((j < n) || circular) && (sn[j + 1] == sn[j])) ? S1[j + 1] : -1; 2023-09-25T16:28:12,483 | ^ 2023-09-25T16:28:13,915 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/hairpin.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/hairpin.o -fopenmp 2023-09-25T16:28:15,413 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/hairpin_bt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/hairpin_bt.o -fopenmp 2023-09-25T16:28:15,821 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/hairpin_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/hairpin_pf.o -fopenmp 2023-09-25T16:28:17,413 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/internal.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/internal.o -fopenmp 2023-09-25T16:28:17,688 In file included from src/ViennaRNA/loops/internal.c:29: 2023-09-25T16:28:17,689 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-09-25T16:28:17,690 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:17,690 71 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:17,691 | ^ 2023-09-25T16:28:17,692 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-09-25T16:28:17,692 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:17,693 110 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:17,694 | ^ 2023-09-25T16:28:17,694 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-09-25T16:28:17,695 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:17,695 141 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:17,696 | ^ 2023-09-25T16:28:17,697 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-09-25T16:28:17,697 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:17,698 183 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:17,699 | ^ 2023-09-25T16:28:17,699 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-09-25T16:28:17,700 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:17,700 222 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:17,701 | ^ 2023-09-25T16:28:17,706 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-09-25T16:28:17,707 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:17,707 726 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:17,708 | ^ 2023-09-25T16:28:17,709 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-09-25T16:28:17,710 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:17,711 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T16:28:17,711 | ^~ 2023-09-25T16:28:17,712 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-09-25T16:28:17,712 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:17,713 780 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:17,714 | ^ 2023-09-25T16:28:17,715 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-09-25T16:28:17,716 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:17,716 821 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:17,717 | ^ 2023-09-25T16:28:22,561 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/internal_bt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/internal_bt.o -fopenmp 2023-09-25T16:28:22,835 In file included from src/ViennaRNA/loops/internal_bt.c:29: 2023-09-25T16:28:22,836 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-09-25T16:28:22,837 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:22,837 71 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:22,838 | ^ 2023-09-25T16:28:22,839 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-09-25T16:28:22,840 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:22,840 110 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:22,841 | ^ 2023-09-25T16:28:22,842 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-09-25T16:28:22,843 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:22,844 141 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:22,845 | ^ 2023-09-25T16:28:22,845 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-09-25T16:28:22,846 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:22,847 183 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:22,847 | ^ 2023-09-25T16:28:22,848 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-09-25T16:28:22,849 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:22,849 222 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:22,850 | ^ 2023-09-25T16:28:22,853 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-09-25T16:28:22,854 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:22,854 726 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:22,855 | ^ 2023-09-25T16:28:22,856 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-09-25T16:28:22,857 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:22,858 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T16:28:22,858 | ^~ 2023-09-25T16:28:22,859 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-09-25T16:28:22,860 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:22,861 780 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:22,861 | ^ 2023-09-25T16:28:22,862 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-09-25T16:28:22,863 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:22,864 821 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:22,865 | ^ 2023-09-25T16:28:26,642 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/internal_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/internal_pf.o -fopenmp 2023-09-25T16:28:26,910 In file included from src/ViennaRNA/loops/internal_pf.c:29: 2023-09-25T16:28:26,911 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-09-25T16:28:26,912 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:26,912 73 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:26,913 | ^ 2023-09-25T16:28:26,914 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-09-25T16:28:26,915 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:26,915 112 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:26,916 | ^ 2023-09-25T16:28:26,917 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-09-25T16:28:26,917 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:26,918 143 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:26,918 | ^ 2023-09-25T16:28:26,919 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-09-25T16:28:26,920 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:26,921 185 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:26,921 | ^ 2023-09-25T16:28:26,922 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-09-25T16:28:26,923 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:26,924 224 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:26,924 | ^ 2023-09-25T16:28:26,930 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-09-25T16:28:26,931 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:26,932 730 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:26,932 | ^ 2023-09-25T16:28:26,934 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-09-25T16:28:26,935 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:26,936 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T16:28:26,936 | ^~ 2023-09-25T16:28:26,937 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-09-25T16:28:26,938 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:26,939 784 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:26,939 | ^ 2023-09-25T16:28:26,940 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-09-25T16:28:26,941 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:26,942 825 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:26,942 | ^ 2023-09-25T16:28:26,954 src/ViennaRNA/loops/internal_pf.c: In function ‘exp_E_int_loop’: 2023-09-25T16:28:26,955 src/ViennaRNA/loops/internal_pf.c:250:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:26,956 250 | if (last_k > se[sn[i]]) 2023-09-25T16:28:26,956 | ^ 2023-09-25T16:28:26,957 src/ViennaRNA/loops/internal_pf.c:331:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:26,958 331 | if (first_l < ss[sn[j]]) 2023-09-25T16:28:26,959 | ^ 2023-09-25T16:28:26,960 src/ViennaRNA/loops/internal_pf.c:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:26,961 415 | if (last_k > se[sn[i]]) 2023-09-25T16:28:26,961 | ^ 2023-09-25T16:28:26,962 src/ViennaRNA/loops/internal_pf.c:426:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:26,963 426 | if (first_l < ss[sn[j]]) 2023-09-25T16:28:26,963 | ^ 2023-09-25T16:28:31,253 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/multibranch.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/multibranch.o -fopenmp 2023-09-25T16:28:31,547 In file included from src/ViennaRNA/loops/multibranch.c:36: 2023-09-25T16:28:31,548 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-09-25T16:28:31,548 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:31,549 76 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:31,549 | ^ 2023-09-25T16:28:31,550 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-09-25T16:28:31,550 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:31,551 95 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:31,551 | ^ 2023-09-25T16:28:31,552 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-09-25T16:28:31,553 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:31,553 124 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:31,554 | ^ 2023-09-25T16:28:31,555 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-09-25T16:28:31,555 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:31,556 155 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:31,557 | ^ 2023-09-25T16:28:31,557 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-09-25T16:28:31,558 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:31,559 328 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:31,560 | ^ 2023-09-25T16:28:31,560 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-09-25T16:28:31,561 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:31,561 397 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:31,562 | ^ 2023-09-25T16:28:31,562 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-09-25T16:28:31,563 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:31,564 530 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:31,564 | ^ 2023-09-25T16:28:31,565 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-09-25T16:28:31,566 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:31,566 663 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:31,567 | ^ 2023-09-25T16:28:31,568 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-09-25T16:28:31,568 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:31,569 802 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:31,569 | ^ 2023-09-25T16:28:31,569 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-09-25T16:28:31,570 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:31,570 849 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:31,571 | ^ 2023-09-25T16:28:31,571 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-09-25T16:28:31,572 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:31,572 888 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:31,573 | ^ 2023-09-25T16:28:31,573 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-09-25T16:28:31,574 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:31,574 947 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:31,575 | ^ 2023-09-25T16:28:31,575 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-09-25T16:28:31,576 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:31,577 983 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:31,577 | ^ 2023-09-25T16:28:31,578 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-09-25T16:28:31,579 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:31,579 1020 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:31,580 | ^ 2023-09-25T16:28:31,581 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-09-25T16:28:31,581 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:31,582 1079 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:31,582 | ^ 2023-09-25T16:28:36,295 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/multibranch_bt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/multibranch_bt.o -fopenmp 2023-09-25T16:28:36,583 In file included from src/ViennaRNA/loops/multibranch_bt.c:30: 2023-09-25T16:28:36,583 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-09-25T16:28:36,584 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:36,585 76 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:36,586 | ^ 2023-09-25T16:28:36,587 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-09-25T16:28:36,587 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:36,588 95 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:36,588 | ^ 2023-09-25T16:28:36,589 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-09-25T16:28:36,590 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:36,590 124 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:36,591 | ^ 2023-09-25T16:28:36,592 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-09-25T16:28:36,592 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:36,593 155 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:36,594 | ^ 2023-09-25T16:28:36,594 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-09-25T16:28:36,595 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:36,595 328 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:36,596 | ^ 2023-09-25T16:28:36,597 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-09-25T16:28:36,598 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:36,598 397 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:36,599 | ^ 2023-09-25T16:28:36,600 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-09-25T16:28:36,601 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:36,601 530 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:36,602 | ^ 2023-09-25T16:28:36,603 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-09-25T16:28:36,603 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:36,604 663 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:36,604 | ^ 2023-09-25T16:28:36,605 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-09-25T16:28:36,606 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:36,607 802 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:36,607 | ^ 2023-09-25T16:28:36,608 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-09-25T16:28:36,609 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:36,609 849 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:36,610 | ^ 2023-09-25T16:28:36,611 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-09-25T16:28:36,611 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:36,612 888 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:36,612 | ^ 2023-09-25T16:28:36,613 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-09-25T16:28:36,613 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:36,614 947 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:36,614 | ^ 2023-09-25T16:28:36,616 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-09-25T16:28:36,616 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:36,617 983 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:36,617 | ^ 2023-09-25T16:28:36,618 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-09-25T16:28:36,618 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:36,619 1020 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:36,619 | ^ 2023-09-25T16:28:36,620 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-09-25T16:28:36,620 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:36,621 1079 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:36,622 | ^ 2023-09-25T16:28:41,052 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/multibranch_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/multibranch_pf.o -fopenmp 2023-09-25T16:28:41,329 src/ViennaRNA/loops/multibranch_pf.c: In function ‘vrna_exp_E_ml_fast_init’: 2023-09-25T16:28:41,329 src/ViennaRNA/loops/multibranch_pf.c:125:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:41,330 125 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-09-25T16:28:41,331 | ^ 2023-09-25T16:28:41,335 In file included from src/ViennaRNA/loops/multibranch_pf.c:11: 2023-09-25T16:28:41,336 src/ViennaRNA/loops/multibranch_pf.c: In function ‘exp_E_mb_loop_fast’: 2023-09-25T16:28:41,336 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:41,337 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:28:41,337 | ^ 2023-09-25T16:28:41,338 src/ViennaRNA/loops/multibranch_pf.c:351:20: note: in expansion of macro ‘MIN2’ 2023-09-25T16:28:41,339 351 | int stop = MIN2(j - 1, se[sn[k - 1]]); 2023-09-25T16:28:41,340 | ^~~~ 2023-09-25T16:28:41,340 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:28:41,341 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:28:41,342 | ^~~ 2023-09-25T16:28:41,343 src/ViennaRNA/loops/multibranch_pf.c:351:20: note: in expansion of macro ‘MIN2’ 2023-09-25T16:28:41,343 351 | int stop = MIN2(j - 1, se[sn[k - 1]]); 2023-09-25T16:28:41,344 | ^~~~ 2023-09-25T16:28:41,345 src/ViennaRNA/loops/multibranch_pf.c: In function ‘exp_E_ml_fast’: 2023-09-25T16:28:41,346 src/ViennaRNA/utils/basic.h:111:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:41,346 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-09-25T16:28:41,347 | ^ 2023-09-25T16:28:41,347 src/ViennaRNA/loops/multibranch_pf.c:566:18: note: in expansion of macro ‘MAX2’ 2023-09-25T16:28:41,348 566 | int stop = MAX2(i, ss[sn[k]]); 2023-09-25T16:28:41,348 | ^~~~ 2023-09-25T16:28:41,349 src/ViennaRNA/utils/basic.h:111:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:28:41,349 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-09-25T16:28:41,350 | ^~~ 2023-09-25T16:28:41,350 src/ViennaRNA/loops/multibranch_pf.c:566:18: note: in expansion of macro ‘MAX2’ 2023-09-25T16:28:41,351 566 | int stop = MAX2(i, ss[sn[k]]); 2023-09-25T16:28:41,352 | ^~~~ 2023-09-25T16:28:41,353 src/ViennaRNA/loops/multibranch_pf.c:587:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:41,354 587 | if (maxk > se[sn[i]]) 2023-09-25T16:28:41,354 | ^ 2023-09-25T16:28:43,264 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mfe.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe.o -fopenmp 2023-09-25T16:28:43,551 In file included from src/ViennaRNA/mfe.c:58: 2023-09-25T16:28:43,552 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-09-25T16:28:43,552 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,553 865 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:43,554 | ^ 2023-09-25T16:28:43,554 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-09-25T16:28:43,555 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,556 898 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:43,556 | ^ 2023-09-25T16:28:43,557 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-09-25T16:28:43,557 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,558 969 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:43,558 | ^ 2023-09-25T16:28:43,559 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-09-25T16:28:43,560 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,560 993 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:43,561 | ^ 2023-09-25T16:28:43,562 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-09-25T16:28:43,562 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,563 1121 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:43,563 | ^ 2023-09-25T16:28:43,564 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-09-25T16:28:43,564 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,565 1145 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:43,565 | ^ 2023-09-25T16:28:43,566 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-09-25T16:28:43,566 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,567 1292 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:43,567 | ^ 2023-09-25T16:28:43,567 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-09-25T16:28:43,568 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,568 1320 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:43,569 | ^ 2023-09-25T16:28:43,569 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-09-25T16:28:43,570 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,571 1348 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:43,571 | ^ 2023-09-25T16:28:43,572 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-09-25T16:28:43,573 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,573 1404 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:43,574 | ^ 2023-09-25T16:28:43,574 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-09-25T16:28:43,575 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,576 1426 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:43,576 | ^ 2023-09-25T16:28:43,577 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-09-25T16:28:43,577 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,578 1450 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:43,578 | ^ 2023-09-25T16:28:43,579 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-09-25T16:28:43,580 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,580 1596 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:43,581 | ^ 2023-09-25T16:28:43,581 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-09-25T16:28:43,582 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,583 1628 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:28:43,583 | ^ 2023-09-25T16:28:43,584 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-09-25T16:28:43,584 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,585 1677 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:43,585 | ^ 2023-09-25T16:28:43,586 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-09-25T16:28:43,586 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,587 1698 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:28:43,587 | ^ 2023-09-25T16:28:43,590 src/ViennaRNA/mfe.c: In function ‘fill_arrays’: 2023-09-25T16:28:43,590 src/ViennaRNA/mfe.c:389:52: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:28:43,591 389 | if (length <= ((fc->strands > 1) ? fc->strands : md->min_loop_size)) { 2023-09-25T16:28:43,591 | ^~~~~~~~~~~~~~~~~ 2023-09-25T16:28:43,592 src/ViennaRNA/mfe.c:389:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,592 389 | if (length <= ((fc->strands > 1) ? fc->strands : md->min_loop_size)) { 2023-09-25T16:28:43,593 | ^~ 2023-09-25T16:28:43,594 src/ViennaRNA/mfe.c: In function ‘postprocess_circular’: 2023-09-25T16:28:43,594 src/ViennaRNA/mfe.c:510:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,595 510 | for (s = 0; s < fc->n_seq; s++) 2023-09-25T16:28:43,596 | ^ 2023-09-25T16:28:43,655 src/ViennaRNA/mfe.c: In function ‘pair_multi_strand’: 2023-09-25T16:28:43,656 src/ViennaRNA/mfe.c:2197:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,657 2197 | if (ends[sn[i]] > i) 2023-09-25T16:28:43,658 | ^ 2023-09-25T16:28:43,659 src/ViennaRNA/mfe.c:2200:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,660 2200 | if (j - 1 > ends[sn[i]]) 2023-09-25T16:28:43,660 | ^ 2023-09-25T16:28:43,662 src/ViennaRNA/mfe.c:2220:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,663 2220 | if (i + 1 <= ends[sn[nick]]) 2023-09-25T16:28:43,663 | ^~ 2023-09-25T16:28:43,665 src/ViennaRNA/mfe.c:2223:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,665 2223 | if (ends[sn[nick]] + 1 <= j - 1) 2023-09-25T16:28:43,666 | ^~ 2023-09-25T16:28:43,671 src/ViennaRNA/mfe.c:2292:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,672 2292 | if (nick > i + 2) 2023-09-25T16:28:43,673 | ^ 2023-09-25T16:28:43,674 src/ViennaRNA/mfe.c:2295:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,675 2295 | if (j > nick + 1) 2023-09-25T16:28:43,675 | ^ 2023-09-25T16:28:43,678 src/ViennaRNA/mfe.c:2325:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,678 2325 | if (nick > i + 2) 2023-09-25T16:28:43,679 | ^ 2023-09-25T16:28:43,680 src/ViennaRNA/mfe.c:2328:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,681 2328 | if (j > nick) 2023-09-25T16:28:43,681 | ^ 2023-09-25T16:28:43,684 src/ViennaRNA/mfe.c:2358:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,685 2358 | if (nick > i + 1) 2023-09-25T16:28:43,685 | ^ 2023-09-25T16:28:43,687 src/ViennaRNA/mfe.c:2361:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,688 2361 | if (j > nick + 1) 2023-09-25T16:28:43,688 | ^ 2023-09-25T16:28:43,690 src/ViennaRNA/mfe.c:2129:29: warning: variable ‘sc_red_ext’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:28:43,691 2129 | sc_ext_red_cb sc_red_ext; 2023-09-25T16:28:43,692 | ^~~~~~~~~~ 2023-09-25T16:28:43,693 src/ViennaRNA/mfe.c:2127:29: warning: variable ‘sc_spl’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:28:43,693 2127 | sc_ext_red_cb sc_spl; 2023-09-25T16:28:43,694 | ^~~~~~ 2023-09-25T16:28:43,696 src/ViennaRNA/mfe.c: In function ‘BT_multi_strand’: 2023-09-25T16:28:43,698 src/ViennaRNA/mfe.c:2477:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,698 2477 | if (ends[sn[*i]] > *i) 2023-09-25T16:28:43,699 | ^ 2023-09-25T16:28:43,701 src/ViennaRNA/mfe.c:2480:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,701 2480 | if (*j - 1 > ends[sn[*i]]) 2023-09-25T16:28:43,702 | ^ 2023-09-25T16:28:43,704 src/ViennaRNA/mfe.c:2486:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,704 2486 | *i = (ends[sn[*i]] > *i) ? *i + 1 : 0; 2023-09-25T16:28:43,705 | ^ 2023-09-25T16:28:43,706 src/ViennaRNA/mfe.c:2487:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,707 2487 | *j = (*j - 1 > ends[sn[*i]]) ? *j - 1 : 0; 2023-09-25T16:28:43,707 | ^ 2023-09-25T16:28:43,708 src/ViennaRNA/mfe.c:2495:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,709 2495 | if (*i + 1 <= ends[sn[nick]]) 2023-09-25T16:28:43,710 | ^~ 2023-09-25T16:28:43,711 src/ViennaRNA/mfe.c:2498:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,712 2498 | if (ends[sn[nick]] + 1 <= *j - 1) 2023-09-25T16:28:43,712 | ^~ 2023-09-25T16:28:43,714 src/ViennaRNA/mfe.c:2504:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,715 2504 | *i = (*i + 1 <= ends[sn[nick]]) ? *i + 1 : 0; 2023-09-25T16:28:43,715 | ^~ 2023-09-25T16:28:43,717 src/ViennaRNA/mfe.c:2505:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,717 2505 | *j = (ends[sn[nick]] + 1 <= *j - 1) ? *j - 1 : 0; 2023-09-25T16:28:43,718 | ^~ 2023-09-25T16:28:43,723 src/ViennaRNA/mfe.c:2590:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,724 2590 | if (nick > *i + 2) 2023-09-25T16:28:43,724 | ^ 2023-09-25T16:28:43,726 src/ViennaRNA/mfe.c:2593:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,727 2593 | if (*j > nick + 1) 2023-09-25T16:28:43,727 | ^ 2023-09-25T16:28:43,730 src/ViennaRNA/mfe.c:2599:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,730 2599 | *i = (nick > *i + 2) ? *i + 2 : 0; 2023-09-25T16:28:43,730 | ^ 2023-09-25T16:28:43,732 src/ViennaRNA/mfe.c:2600:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,733 2600 | *j = (*j > nick + 1) ? *j - 2 : 0; 2023-09-25T16:28:43,733 | ^ 2023-09-25T16:28:43,736 src/ViennaRNA/mfe.c:2623:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,737 2623 | if (nick > *i + 2) 2023-09-25T16:28:43,737 | ^ 2023-09-25T16:28:43,739 src/ViennaRNA/mfe.c:2626:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,740 2626 | if (*j > nick) 2023-09-25T16:28:43,740 | ^ 2023-09-25T16:28:43,742 src/ViennaRNA/mfe.c:2632:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,743 2632 | *i = (nick > *i + 2) ? *i + 2 : 0; 2023-09-25T16:28:43,743 | ^ 2023-09-25T16:28:43,745 src/ViennaRNA/mfe.c:2633:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,746 2633 | *j = (*j > nick) ? *j - 1 : 0; 2023-09-25T16:28:43,746 | ^ 2023-09-25T16:28:43,748 src/ViennaRNA/mfe.c:2656:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,749 2656 | if (nick > *i + 1) 2023-09-25T16:28:43,749 | ^ 2023-09-25T16:28:43,751 src/ViennaRNA/mfe.c:2659:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,752 2659 | if (*j > nick + 1) 2023-09-25T16:28:43,753 | ^ 2023-09-25T16:28:43,755 src/ViennaRNA/mfe.c:2665:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:43,755 2665 | *i = (nick > *i + 1) ? *i + 1 : 0; 2023-09-25T16:28:43,756 | ^ 2023-09-25T16:28:43,757 src/ViennaRNA/mfe.c:2666:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,758 2666 | *j = (*j > nick + 1) ? *j - 2 : 0; 2023-09-25T16:28:43,758 | ^ 2023-09-25T16:28:43,759 src/ViennaRNA/mfe.c:2403:29: warning: variable ‘sc_red_ext’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:28:43,760 2403 | sc_ext_red_cb sc_red_ext; 2023-09-25T16:28:43,761 | ^~~~~~~~~~ 2023-09-25T16:28:43,762 src/ViennaRNA/mfe.c:2401:29: warning: variable ‘sc_spl’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:28:43,762 2401 | sc_ext_red_cb sc_spl; 2023-09-25T16:28:43,763 | ^~~~~~ 2023-09-25T16:28:43,787 src/ViennaRNA/mfe.c: In function ‘backtrack’: 2023-09-25T16:28:43,790 src/ViennaRNA/mfe.c:3261:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,791 3261 | if (k < fc->strand_end[strand]) { 2023-09-25T16:28:43,791 | ^ 2023-09-25T16:28:43,794 src/ViennaRNA/mfe.c:3296:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:43,795 3296 | if (k > fc->strand_start[strand]) { 2023-09-25T16:28:43,795 | ^ 2023-09-25T16:28:51,907 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mfe_window.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe_window.o -fopenmp 2023-09-25T16:28:52,200 src/ViennaRNA/mfe_window.c: In function ‘backtrack’: 2023-09-25T16:28:52,201 src/ViennaRNA/mfe_window.c:930:68: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:28:52,201 930 | if ((bp_stack[b].i == bp_stack[b].j) && (bp_stack[b].i < length)) 2023-09-25T16:28:52,202 | ^ 2023-09-25T16:28:52,204 src/ViennaRNA/mfe_window.c:1051:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:52,204 1051 | if (max3 < bp_stack[i].j - start) 2023-09-25T16:28:52,205 | ^ 2023-09-25T16:28:52,210 src/ViennaRNA/mfe_window.c: In function ‘update_block’: 2023-09-25T16:28:52,211 src/ViennaRNA/mfe_window.c:1312:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:28:52,212 1312 | for (size_t pos = i_local + 1; pos <= end; pos++) 2023-09-25T16:28:52,212 | ^~ 2023-09-25T16:28:52,213 src/ViennaRNA/mfe_window.c:1313:22: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:28:52,214 1313 | if (b->pt[pos] > pos) { 2023-09-25T16:28:52,214 | ^ 2023-09-25T16:28:52,215 src/ViennaRNA/mfe_window.c:1348:24: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:28:52,215 1348 | if (b->pt[p] > p) { 2023-09-25T16:28:52,216 | ^ 2023-09-25T16:28:52,219 src/ViennaRNA/mfe_window.c: In function ‘insert_block’: 2023-09-25T16:28:52,220 src/ViennaRNA/mfe_window.c:1592:21: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T16:28:52,221 1592 | if (pt[i_local] > i_local) { 2023-09-25T16:28:52,222 | ^ 2023-09-25T16:28:52,222 src/ViennaRNA/mfe_window.c: In function ‘print_block_list’: 2023-09-25T16:28:52,223 src/ViennaRNA/mfe_window.c:1611:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-09-25T16:28:52,224 1611 | printf("block %lu: en=%d, start: %lu, end: %lu, shift: %lu\n", 2023-09-25T16:28:52,225 | ~~^ 2023-09-25T16:28:52,225 | | 2023-09-25T16:28:52,225 | long unsigned int 2023-09-25T16:28:52,226 | %u 2023-09-25T16:28:52,226 1612 | cnt, 2023-09-25T16:28:52,226 | ~~~ 2023-09-25T16:28:52,227 | | 2023-09-25T16:28:52,227 | size_t {aka unsigned int} 2023-09-25T16:28:52,228 src/ViennaRNA/mfe_window.c:1617:13: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-09-25T16:28:52,229 1617 | printf("%lu blocks remaining\n", cnt); 2023-09-25T16:28:52,229 | ~~^ ~~~ 2023-09-25T16:28:52,230 | | | 2023-09-25T16:28:52,231 | long unsigned int size_t {aka unsigned int} 2023-09-25T16:28:52,231 | %u 2023-09-25T16:28:52,275 src/ViennaRNA/mfe_window.c: At top level: 2023-09-25T16:28:52,277 src/ViennaRNA/mfe_window.c:1605:1: warning: ‘print_block_list’ defined but not used [-Wunused-function] 2023-09-25T16:28:52,277 1605 | print_block_list(struct block *block_list) 2023-09-25T16:28:52,278 | ^~~~~~~~~~~~~~~~ 2023-09-25T16:28:54,228 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mfe_window_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe_window_wrappers.o -fopenmp 2023-09-25T16:28:54,472 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mfe_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe_wrappers.o -fopenmp 2023-09-25T16:28:54,732 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mm.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mm.o -fopenmp 2023-09-25T16:28:54,954 src/ViennaRNA/mm.c: In function ‘maximumMatchingConstraint’: 2023-09-25T16:28:54,955 src/ViennaRNA/mm.c:154:25: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:54,955 154 | if (ptable[l] != j) 2023-09-25T16:28:54,956 | ^~ 2023-09-25T16:28:54,956 src/ViennaRNA/mm.c: In function ‘maximumMatching2Constraint’: 2023-09-25T16:28:54,958 src/ViennaRNA/mm.c:187:25: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:54,959 187 | if (ptable[l] != j && ptable2[l] != j) 2023-09-25T16:28:54,959 | ^~ 2023-09-25T16:28:54,960 src/ViennaRNA/mm.c:187:44: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:28:54,961 187 | if (ptable[l] != j && ptable2[l] != j) 2023-09-25T16:28:54,961 | ^~ 2023-09-25T16:28:55,628 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/model.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/model.o -fopenmp 2023-09-25T16:28:56,621 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/move_set.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/move_set.o -fopenmp 2023-09-25T16:28:58,732 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/convert.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/convert.o -fopenmp 2023-09-25T16:28:59,497 In file included from src/ViennaRNA/params/convert.c:27: 2023-09-25T16:28:59,498 src/ViennaRNA/params/1.8.4_epars.h:100:13: warning: ‘oldinternal_loop37_184’ defined but not used [-Wunused-variable] 2023-09-25T16:28:59,498 100 | PRIVATE int oldinternal_loop37_184[31] = { 2023-09-25T16:28:59,499 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:28:59,500 src/ViennaRNA/params/1.8.4_epars.h:90:13: warning: ‘oldbulge37_184’ defined but not used [-Wunused-variable] 2023-09-25T16:28:59,500 90 | PRIVATE int oldbulge37_184[31] = { 2023-09-25T16:28:59,501 | ^~~~~~~~~~~~~~ 2023-09-25T16:28:59,502 src/ViennaRNA/params/1.8.4_epars.h:80:13: warning: ‘oldhairpin37_184’ defined but not used [-Wunused-variable] 2023-09-25T16:28:59,502 80 | PRIVATE int oldhairpin37_184[31] = { /* from ViennaRNA 1.3 */ 2023-09-25T16:28:59,503 | ^~~~~~~~~~~~~~~~ 2023-09-25T16:28:59,503 src/ViennaRNA/params/1.8.4_epars.h:50:16: warning: ‘Tmeasure_184’ defined but not used [-Wunused-variable] 2023-09-25T16:28:59,504 50 | PRIVATE double Tmeasure_184 = 37 + K0; /* temperature of param measurements */ 2023-09-25T16:28:59,505 | ^~~~~~~~~~~~ 2023-09-25T16:29:00,463 In function ‘write_new_parameter_file’, 2023-09-25T16:29:00,464 inlined from ‘convert_parameter_file’ at src/ViennaRNA/params/convert.c:172:3: 2023-09-25T16:29:00,464 src/ViennaRNA/params/convert.c:1166:9: warning: ‘strncpy’ specified bound 6 equals destination size [-Wstringop-truncation] 2023-09-25T16:29:00,465 1166 | strncpy(bla, Tetraloops_184 + c * 7, 6); 2023-09-25T16:29:00,465 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:00,466 src/ViennaRNA/params/convert.c:1145:9: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 240 [-Wstringop-truncation] 2023-09-25T16:29:00,467 1145 | strncpy(bla, Triloops_184 + c * 6, 5); 2023-09-25T16:29:00,468 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:01,864 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/default.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/default.o -fopenmp 2023-09-25T16:29:02,783 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/io.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/io.o -fopenmp 2023-09-25T16:29:12,900 src/ViennaRNA/params/io.c: In function ‘save_parameter_file’: 2023-09-25T16:29:12,902 src/ViennaRNA/params/io.c:1613:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:29:12,902 1613 | for (c = 0; c < strlen(Hexaloops) / 9; c++) 2023-09-25T16:29:12,903 | ^ 2023-09-25T16:29:12,904 src/ViennaRNA/params/io.c:1617:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:29:12,904 1617 | for (c = 0; c < strlen(Tetraloops) / 7; c++) 2023-09-25T16:29:12,905 | ^ 2023-09-25T16:29:12,907 src/ViennaRNA/params/io.c:1621:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:29:12,907 1621 | for (c = 0; c < strlen(Triloops) / 6; c++) 2023-09-25T16:29:12,908 | ^ 2023-09-25T16:29:12,920 src/ViennaRNA/params/io.c: In function ‘write_parameter_file’: 2023-09-25T16:29:12,922 src/ViennaRNA/params/io.c:2096:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:29:12,923 2096 | for (c = 0; c < strlen(Hexaloops) / 9; c++) 2023-09-25T16:29:12,923 | ^ 2023-09-25T16:29:12,926 src/ViennaRNA/params/io.c:2100:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:29:12,926 2100 | for (c = 0; c < strlen(Tetraloops) / 7; c++) 2023-09-25T16:29:12,927 | ^ 2023-09-25T16:29:12,929 src/ViennaRNA/params/io.c:2104:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:29:12,929 2104 | for (c = 0; c < strlen(Triloops) / 6; c++) 2023-09-25T16:29:12,930 | ^ 2023-09-25T16:29:12,956 src/ViennaRNA/params/io.c: At top level: 2023-09-25T16:29:12,957 src/ViennaRNA/params/io.c:1003:1: warning: ‘rd_6dim’ defined but not used [-Wunused-function] 2023-09-25T16:29:12,957 1003 | rd_6dim(char **content, 2023-09-25T16:29:12,958 | ^~~~~~~ 2023-09-25T16:29:16,189 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/params.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/params.o -fopenmp 2023-09-25T16:29:16,453 src/ViennaRNA/params/params.c: In function ‘rescale_params’: 2023-09-25T16:29:16,454 src/ViennaRNA/params/params.c:1088:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:16,454 1088 | for (i = 2; i <= vc->length; i++) { 2023-09-25T16:29:16,455 | ^~ 2023-09-25T16:29:19,474 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/salt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/salt.o -fopenmp 2023-09-25T16:29:19,675 src/ViennaRNA/params/salt.c: In function ‘vrna_salt_duplex_init’: 2023-09-25T16:29:19,677 src/ViennaRNA/params/salt.c:193:19: warning: unused variable ‘penalty’ [-Wunused-variable] 2023-09-25T16:29:19,678 193 | double a, x, penalty; 2023-09-25T16:29:19,678 | ^~~~~~~ 2023-09-25T16:29:19,679 src/ViennaRNA/params/salt.c:193:13: warning: unused variable ‘a’ [-Wunused-variable] 2023-09-25T16:29:19,679 193 | double a, x, penalty; 2023-09-25T16:29:19,680 | ^ 2023-09-25T16:29:19,873 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/part_func.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/part_func.o -fopenmp 2023-09-25T16:29:20,166 src/ViennaRNA/part_func.c: In function ‘postprocess_circular’: 2023-09-25T16:29:20,167 src/ViennaRNA/part_func.c:770:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:20,167 770 | for (s = 0; s < fc->n_seq; s++) 2023-09-25T16:29:20,168 | ^ 2023-09-25T16:29:21,393 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/part_func_co.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/part_func_co.o -fopenmp 2023-09-25T16:29:21,923 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/part_func_up.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/part_func_up.o -fopenmp 2023-09-25T16:29:22,184 src/ViennaRNA/part_func_up.c: In function ‘free_pu_contrib_struct’: 2023-09-25T16:29:22,185 src/ViennaRNA/part_func_up.c:222:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:29:22,185 222 | for (i = 0; i <= pu->length; i++) { 2023-09-25T16:29:22,186 | ^~ 2023-09-25T16:29:22,187 src/ViennaRNA/part_func_up.c: In function ‘pf_unstru’: 2023-09-25T16:29:22,187 src/ViennaRNA/part_func_up.c:270:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:22,188 270 | for (i = 0; i < size; i++) 2023-09-25T16:29:22,188 | ^ 2023-09-25T16:29:25,216 src/ViennaRNA/part_func_up.c: In function ‘pf_interact’: 2023-09-25T16:29:25,217 src/ViennaRNA/part_func_up.c:911:69: warning: ‘p_c2_S’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:29:25,218 911 | tt = qint_4[i][j][a][b] * p_c_S[add_i5][add_i3] * p_c2_S[j][b] * scalew * rev_d; 2023-09-25T16:29:25,219 | ^ 2023-09-25T16:29:25,220 src/ViennaRNA/part_func_up.c:594:49: note: ‘p_c2_S’ was declared here 2023-09-25T16:29:25,220 594 | double temp, Z, rev_d, E, Z2, **p_c_S, **p_c2_S, int_scale; 2023-09-25T16:29:25,221 | ^~~~~~ 2023-09-25T16:29:26,286 src/ViennaRNA/part_func_up.c: In function ‘Up_plot’: 2023-09-25T16:29:26,288 src/ViennaRNA/part_func_up.c:1615:10: warning: ‘ret’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:29:26,288 1615 | return ret; 2023-09-25T16:29:26,289 | ^~~ 2023-09-25T16:29:26,290 src/ViennaRNA/part_func_up.c:1587:11: note: ‘ret’ was declared here 2023-09-25T16:29:26,290 1587 | int ret; 2023-09-25T16:29:26,291 | ^~~ 2023-09-25T16:29:26,443 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/part_func_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/part_func_wrappers.o -fopenmp 2023-09-25T16:29:26,735 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/perturbation_fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/perturbation_fold.o -fopenmp 2023-09-25T16:29:27,434 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/pf_fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/pf_fold.o -fopenmp 2023-09-25T16:29:28,264 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/pf_multifold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/pf_multifold.o -fopenmp 2023-09-25T16:29:28,444 src/ViennaRNA/pf_multifold.c: In function ‘mf_rule_pair’: 2023-09-25T16:29:28,445 src/ViennaRNA/pf_multifold.c:121:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:28,446 121 | if (i + 1 <= ends[sn[nick]]) 2023-09-25T16:29:28,447 | ^~ 2023-09-25T16:29:28,447 src/ViennaRNA/pf_multifold.c:124:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:29:28,448 124 | if (ends[sn[nick]] + 1 <= j - 1) 2023-09-25T16:29:28,449 | ^~ 2023-09-25T16:29:28,749 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plex.o -fopenmp 2023-09-25T16:29:28,991 src/ViennaRNA/plex.c: In function ‘duplexfold_XS’: 2023-09-25T16:29:28,991 src/ViennaRNA/plex.c:431:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:29:28,992 431 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2023-09-25T16:29:28,993 | ^~~~~~~ 2023-09-25T16:29:29,010 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-09-25T16:29:29,011 src/ViennaRNA/plex.c:759:11: warning: unused variable ‘jdiff’ [-Wunused-variable] 2023-09-25T16:29:29,012 759 | int jdiff = j_pos + j - 11; 2023-09-25T16:29:29,012 | ^~~~~ 2023-09-25T16:29:29,015 src/ViennaRNA/plex.c:1010:7: warning: variable ‘endy’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:29:29,015 1010 | int endy; 2023-09-25T16:29:29,016 | ^~~~ 2023-09-25T16:29:29,016 src/ViennaRNA/plex.c:1008:7: warning: variable ‘endx’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:29:29,017 1008 | int endx; 2023-09-25T16:29:29,017 | ^~~~ 2023-09-25T16:29:29,018 src/ViennaRNA/plex.c:624:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:29:29,018 624 | int maxPenalty[4]; 2023-09-25T16:29:29,019 | ^~~~~~~~~~ 2023-09-25T16:29:29,042 src/ViennaRNA/plex.c: In function ‘fbacktrack_XS’: 2023-09-25T16:29:29,043 src/ViennaRNA/plex.c:1107:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:29:29,044 1107 | int maxPenalty[4]; 2023-09-25T16:29:29,044 | ^~~~~~~~~~ 2023-09-25T16:29:29,062 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2023-09-25T16:29:29,064 src/ViennaRNA/plex.c:1938:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:29:29,065 1938 | int maxPenalty[4]; 2023-09-25T16:29:29,066 | ^~~~~~~~~~ 2023-09-25T16:29:29,081 src/ViennaRNA/plex.c: In function ‘duplexfold’: 2023-09-25T16:29:29,084 src/ViennaRNA/plex.c:2663:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:29:29,084 2663 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T16:29:29,085 | ^~ 2023-09-25T16:29:29,107 src/ViennaRNA/plex.c: In function ‘fduplexfold’: 2023-09-25T16:29:29,110 src/ViennaRNA/plex.c:2851:39: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:29:29,111 2851 | int i, j, Emin, i_min, j_min, l1; 2023-09-25T16:29:29,111 | ^~ 2023-09-25T16:29:30,874 src/ViennaRNA/plex.c:3177:16: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:29:30,875 3177 | j0 = MAX2(j - 1, 11); 2023-09-25T16:29:30,875 | ^ 2023-09-25T16:29:30,877 src/ViennaRNA/plex.c:2862:13: note: ‘max_pos_j’ was declared here 2023-09-25T16:29:30,877 2862 | int max_pos_j; 2023-09-25T16:29:30,878 | ^~~~~~~~~ 2023-09-25T16:29:30,879 In function ‘fbacktrack’, 2023-09-25T16:29:30,879 inlined from ‘fduplexfold’ at src/ViennaRNA/plex.c:3115:11: 2023-09-25T16:29:30,880 src/ViennaRNA/plex.c:3189:20: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:29:30,880 3189 | type = pair[S1[i]][S2[j]]; 2023-09-25T16:29:30,881 | ^ 2023-09-25T16:29:30,882 src/ViennaRNA/plex.c: In function ‘fduplexfold’: 2023-09-25T16:29:30,883 src/ViennaRNA/plex.c:2861:13: note: ‘max_pos’ was declared here 2023-09-25T16:29:30,883 2861 | int max_pos; /* get position of the best hit */ 2023-09-25T16:29:30,884 | ^~~~~~~ 2023-09-25T16:29:33,793 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-09-25T16:29:33,793 src/ViennaRNA/plex.c:1023:6: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:29:33,794 1023 | if (j_min > 11) 2023-09-25T16:29:33,794 | ^ 2023-09-25T16:29:33,795 src/ViennaRNA/plex.c:619:13: note: ‘max_pos_j’ was declared here 2023-09-25T16:29:33,795 619 | int max_pos_j; 2023-09-25T16:29:33,796 | ^~~~~~~~~ 2023-09-25T16:29:33,797 In function ‘fbacktrack_XS’, 2023-09-25T16:29:33,798 inlined from ‘fduplexfold_XS’ at src/ViennaRNA/plex.c:988:11: 2023-09-25T16:29:33,798 src/ViennaRNA/plex.c:1126:20: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:29:33,799 1126 | type = pair[S1[i]][S2[j]]; 2023-09-25T16:29:33,800 | ^ 2023-09-25T16:29:33,801 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-09-25T16:29:33,802 src/ViennaRNA/plex.c:618:13: note: ‘max_pos’ was declared here 2023-09-25T16:29:33,802 618 | int max_pos; /* get position of the best hit */ 2023-09-25T16:29:33,803 | ^~~~~~~ 2023-09-25T16:29:35,879 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2023-09-25T16:29:35,881 src/ViennaRNA/plex.c:2317:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:29:35,881 2317 | position_j[i + delta] = min_j_colonne; 2023-09-25T16:29:35,882 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T16:29:35,882 src/ViennaRNA/plex.c:1934:13: note: ‘min_j_colonne’ was declared here 2023-09-25T16:29:35,883 1934 | int min_j_colonne; 2023-09-25T16:29:35,883 | ^~~~~~~~~~~~~ 2023-09-25T16:29:37,054 src/ViennaRNA/plex.c: In function ‘Lduplexfold’: 2023-09-25T16:29:37,057 src/ViennaRNA/plex.c:4087:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:29:37,058 4087 | position_j[i + delta] = min_j_colonne; 2023-09-25T16:29:37,058 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T16:29:37,061 src/ViennaRNA/plex.c:3786:13: note: ‘min_j_colonne’ was declared here 2023-09-25T16:29:37,061 3786 | int min_j_colonne; 2023-09-25T16:29:37,062 | ^~~~~~~~~~~~~ 2023-09-25T16:29:38,074 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plex_functions.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plex_functions.o -fopenmp 2023-09-25T16:29:38,320 src/ViennaRNA/plex_functions.c: In function ‘vrna_pk_plex’: 2023-09-25T16:29:38,320 src/ViennaRNA/plex_functions.c:250:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:38,321 250 | for (i = hit_ptr->start_5; i <= hit_ptr->end_5; i++) 2023-09-25T16:29:38,322 | ^~ 2023-09-25T16:29:38,322 src/ViennaRNA/plex_functions.c:252:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:38,323 252 | for (i = hit_ptr->start_3; i <= hit_ptr->end_3; i++) 2023-09-25T16:29:38,324 | ^~ 2023-09-25T16:29:38,324 src/ViennaRNA/plex_functions.c:284:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:38,325 284 | for (i = hit_ptr->start_5 - 1; i < hit_ptr->end_5; i++) 2023-09-25T16:29:38,326 | ^ 2023-09-25T16:29:38,326 src/ViennaRNA/plex_functions.c:288:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:38,327 288 | for (i = hit_ptr->start_3 - 1; i < hit_ptr->end_3; i++) 2023-09-25T16:29:38,327 | ^ 2023-09-25T16:29:38,328 src/ViennaRNA/plex_functions.c: In function ‘duplexfold_XS’: 2023-09-25T16:29:38,329 src/ViennaRNA/plex_functions.c:563:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:29:38,329 563 | if (n > turn + 1) { 2023-09-25T16:29:38,330 | ^ 2023-09-25T16:29:38,331 src/ViennaRNA/plex_functions.c:575:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:38,331 575 | for (j = i + turn + 1; j <= n; j++) { 2023-09-25T16:29:38,332 | ^~ 2023-09-25T16:29:38,332 src/ViennaRNA/plex_functions.c:591:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:38,333 591 | for (l = i + turn + 1; l <= n; l++) { 2023-09-25T16:29:38,333 | ^~ 2023-09-25T16:29:38,334 src/ViennaRNA/plex_functions.c:632:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:38,334 632 | for (j = i + turn + 1; j <= n; j++) { 2023-09-25T16:29:38,335 | ^~ 2023-09-25T16:29:38,335 In file included from src/ViennaRNA/plex_functions.c:25: 2023-09-25T16:29:38,336 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:29:38,336 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:29:38,337 | ^ 2023-09-25T16:29:38,337 src/ViennaRNA/plex_functions.c:634:23: note: in expansion of macro ‘MIN2’ 2023-09-25T16:29:38,338 634 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2023-09-25T16:29:38,339 | ^~~~ 2023-09-25T16:29:38,339 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:29:38,340 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:29:38,340 | ^~~ 2023-09-25T16:29:38,341 src/ViennaRNA/plex_functions.c:634:23: note: in expansion of macro ‘MIN2’ 2023-09-25T16:29:38,341 634 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2023-09-25T16:29:38,342 | ^~~~ 2023-09-25T16:29:38,343 src/ViennaRNA/plex_functions.c:640:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:38,344 640 | sl = (l < n) ? S1[l + 1] : -1; 2023-09-25T16:29:38,345 | ^ 2023-09-25T16:29:39,838 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.o -fopenmp 2023-09-25T16:29:39,997 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-09-25T16:29:39,998 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-09-25T16:29:39,998 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:40: warning: argument 1 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:29:39,999 470 | isToTheRightPointVector(const double *lineStart, 2023-09-25T16:29:39,999 | ~~~~~~~~~~~~~~~^~~~~~~~~ 2023-09-25T16:29:40,000 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:102:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:29:40,001 102 | isToTheRightPointVector(const double lineStart[2], 2023-09-25T16:29:40,001 | ~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:29:40,002 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:471:40: warning: argument 2 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:29:40,003 471 | const double *lineVector, 2023-09-25T16:29:40,004 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2023-09-25T16:29:40,004 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:103:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:29:40,005 103 | const double lineVector[2], 2023-09-25T16:29:40,006 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2023-09-25T16:29:40,006 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:472:40: warning: argument 3 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:29:40,007 472 | const double *point) 2023-09-25T16:29:40,008 | ~~~~~~~~~~~~~~~^~~~~ 2023-09-25T16:29:40,008 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:104:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:29:40,009 104 | const double point[2]); 2023-09-25T16:29:40,009 | ~~~~~~~~~~~~~~^~~~~~~~ 2023-09-25T16:29:40,010 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-09-25T16:29:40,011 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:29:40,011 846 | double alpha[3]; 2023-09-25T16:29:40,012 | ^~~~~ 2023-09-25T16:29:40,071 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:19: 2023-09-25T16:29:40,071 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectLineArc’: 2023-09-25T16:29:40,072 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:285:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,072 285 | char *fnName = "intersectLineArc"; 2023-09-25T16:29:40,073 | ^~~~~~ 2023-09-25T16:29:40,073 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectArcArc’: 2023-09-25T16:29:40,074 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:341:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,075 341 | char *fnName = "intersectArcArc"; 2023-09-25T16:29:40,075 | ^~~~~~ 2023-09-25T16:29:40,079 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:19, 2023-09-25T16:29:40,079 from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-09-25T16:29:40,080 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-09-25T16:29:40,081 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-09-25T16:29:40,081 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc: In function ‘ClosestPtPointBulge’: 2023-09-25T16:29:40,082 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:151:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,082 151 | char *fnName = "CLOSEST ON BULGE"; 2023-09-25T16:29:40,083 | ^~~~~~ 2023-09-25T16:29:40,093 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodesBoundingBoxes’: 2023-09-25T16:29:40,093 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:142:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,094 142 | const char *fnName = "intersectNodesBoundingBoxes"; 2023-09-25T16:29:40,094 | ^~~~~~ 2023-09-25T16:29:40,095 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodeNode’: 2023-09-25T16:29:40,096 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:179:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,096 179 | const char *fnName = "intersectNodeNode"; 2023-09-25T16:29:40,097 | ^~~~~~ 2023-09-25T16:29:40,103 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:23: 2023-09-25T16:29:40,103 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc: In function ‘checkAndApplyConfigChanges’: 2023-09-25T16:29:40,104 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:109:13: warning: unused variable ‘newRadius’ [-Wunused-variable] 2023-09-25T16:29:40,104 109 | double newRadius = cfg->radius; 2023-09-25T16:29:40,105 | ^~~~~~~~~ 2023-09-25T16:29:40,105 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:104:13: warning: unused variable ‘oldRadius’ [-Wunused-variable] 2023-09-25T16:29:40,106 104 | double oldRadius = cfg->radius; 2023-09-25T16:29:40,106 | ^~~~~~~~~ 2023-09-25T16:29:40,107 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:100:9: warning: unused variable ‘logTag’ [-Wunused-variable] 2023-09-25T16:29:40,108 100 | char *logTag = intersectionTypeToString(it); 2023-09-25T16:29:40,108 | ^~~~~~ 2023-09-25T16:29:40,109 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:61:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,109 61 | char *fnName = "checkAndApplyConfigChanges"; 2023-09-25T16:29:40,110 | ^~~~~~ 2023-09-25T16:29:40,110 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusLinearSearch’: 2023-09-25T16:29:40,111 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:84:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,111 84 | char *fnName = "shrinkLoopRadiusLinearSearch"; 2023-09-25T16:29:40,112 | ^~~~~~ 2023-09-25T16:29:40,113 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusBinarySearch’: 2023-09-25T16:29:40,113 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:162:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,114 162 | char *fnName = "shrinkLoopRadiusBinarySearch"; 2023-09-25T16:29:40,114 | ^~~~~~ 2023-09-25T16:29:40,118 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeNode’: 2023-09-25T16:29:40,118 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:694:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,119 694 | char *fnName = "optimizeNode"; 2023-09-25T16:29:40,119 | ^~~~~~ 2023-09-25T16:29:40,120 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTreeRecursive’: 2023-09-25T16:29:40,121 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:889:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,121 889 | char *fnName = "optimizeTreeRecursive"; 2023-09-25T16:29:40,122 | ^~~~~~ 2023-09-25T16:29:40,122 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTree’: 2023-09-25T16:29:40,123 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:943:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,123 943 | char *fnName = "optimizeTree"; 2023-09-25T16:29:40,124 | ^~~~~~ 2023-09-25T16:29:40,124 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:22, 2023-09-25T16:29:40,125 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:14: 2023-09-25T16:29:40,125 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasEquidistantIncrease’: 2023-09-25T16:29:40,126 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:53:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,127 53 | char *fnName = "CALC DELTAS EQUIDISTANT INCREASE"; 2023-09-25T16:29:40,127 | ^~~~~~ 2023-09-25T16:29:40,128 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasMaximumFirstDecrease’: 2023-09-25T16:29:40,128 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:82:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,129 82 | char *fnName = "CALC DELTAS MAXIMUM FIRST DECREASE"; 2023-09-25T16:29:40,129 | ^~~~~~ 2023-09-25T16:29:40,130 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasNearestNeighborsFirstDecrease’: 2023-09-25T16:29:40,130 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:191:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,131 191 | char *fnName = "CALC DELTAS NEAREST NEIGHBOR FIRST DECREASE"; 2023-09-25T16:29:40,131 | ^~~~~~ 2023-09-25T16:29:40,135 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltas’: 2023-09-25T16:29:40,135 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:310:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,136 310 | char *fnName = "CALC DELTAS"; 2023-09-25T16:29:40,136 | ^~~~~~ 2023-09-25T16:29:40,137 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘fixIntersectionOfSiblings’: 2023-09-25T16:29:40,137 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:76:18: warning: unused variable ‘rightNode’ [-Wunused-variable] 2023-09-25T16:29:40,138 76 | treeNode *rightNode = getChild(tree, right); 2023-09-25T16:29:40,139 | ^~~~~~~~~ 2023-09-25T16:29:40,139 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:75:18: warning: unused variable ‘leftNode’ [-Wunused-variable] 2023-09-25T16:29:40,140 75 | treeNode *leftNode = getChild(tree, left); 2023-09-25T16:29:40,140 | ^~~~~~~~ 2023-09-25T16:29:40,141 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘handleIntersectionOfSiblings’: 2023-09-25T16:29:40,141 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:103:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,142 103 | char *fnName = "FIX INTERSECTION OF SIBLINGS"; 2023-09-25T16:29:40,142 | ^~~~~~ 2023-09-25T16:29:40,143 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘checkSiblings’: 2023-09-25T16:29:40,143 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:153:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,144 153 | char *fnName = "CHECK SIBLINGS"; 2023-09-25T16:29:40,144 | ^~~~~~ 2023-09-25T16:29:40,151 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:23, 2023-09-25T16:29:40,152 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15: 2023-09-25T16:29:40,153 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘pointToAngle’: 2023-09-25T16:29:40,153 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:31:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,154 31 | char *fnName = "POINT TO ANGLE"; 2023-09-25T16:29:40,154 | ^~~~~~ 2023-09-25T16:29:40,155 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfRectangleAndCircle’: 2023-09-25T16:29:40,156 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:169:14: warning: unused variable ‘staticRectExt’ [-Wunused-variable] 2023-09-25T16:29:40,157 169 | double staticRectExt[2] = { 2023-09-25T16:29:40,157 | ^~~~~~~~~~~~~ 2023-09-25T16:29:40,158 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:74:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,159 74 | char *fnName = "fixIntersectionOfCircleAndRectangle"; 2023-09-25T16:29:40,159 | ^~~~~~ 2023-09-25T16:29:40,160 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfCircles’: 2023-09-25T16:29:40,160 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:204:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,161 204 | char *fnName = "fixIntersectionOfCircles"; 2023-09-25T16:29:40,161 | ^~~~~~ 2023-09-25T16:29:40,162 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxL’: 2023-09-25T16:29:40,162 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:310:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,163 310 | char *fnName = "getRotationAngleLxL"; 2023-09-25T16:29:40,163 | ^~~~~~ 2023-09-25T16:29:40,164 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxS’: 2023-09-25T16:29:40,164 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:349:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,165 349 | char *fnName = "getRotationAngleLxS"; 2023-09-25T16:29:40,165 | ^~~~~~ 2023-09-25T16:29:40,166 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxL’: 2023-09-25T16:29:40,166 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:382:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,166 382 | char *fnName = "getRotationAngleSxL"; 2023-09-25T16:29:40,167 | ^~~~~~ 2023-09-25T16:29:40,168 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxB’: 2023-09-25T16:29:40,168 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:434:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T16:29:40,169 434 | short intersect = intersectLoopBulges(staticLoop, mobileStem, &mobileBulgeIndex); 2023-09-25T16:29:40,169 | ^~~~~~~~~ 2023-09-25T16:29:40,170 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:413:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,170 413 | char *fnName = "getRotationAngleLxB"; 2023-09-25T16:29:40,170 | ^~~~~~ 2023-09-25T16:29:40,171 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxL’: 2023-09-25T16:29:40,172 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:489:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T16:29:40,172 489 | short intersect = intersectLoopBulges(mobileLoop, staticStem, &staticBulgeIndex); 2023-09-25T16:29:40,173 | ^~~~~~~~~ 2023-09-25T16:29:40,173 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:477:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,174 477 | char *fnName = "getRotationAngleBxL"; 2023-09-25T16:29:40,174 | ^~~~~~ 2023-09-25T16:29:40,175 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxS’: 2023-09-25T16:29:40,175 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:541:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,176 541 | char *fnName = "getRotationAngleSxS"; 2023-09-25T16:29:40,177 | ^~~~~~ 2023-09-25T16:29:40,177 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxB’: 2023-09-25T16:29:40,178 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:567:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T16:29:40,178 567 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2023-09-25T16:29:40,179 | ^~~~~~~~~ 2023-09-25T16:29:40,180 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:560:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,180 560 | char *fnName = "getRotationAngleSxB"; 2023-09-25T16:29:40,181 | ^~~~~~ 2023-09-25T16:29:40,181 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxS’: 2023-09-25T16:29:40,182 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:612:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T16:29:40,182 612 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2023-09-25T16:29:40,183 | ^~~~~~~~~ 2023-09-25T16:29:40,183 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:605:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,184 605 | char *fnName = "getRotationAngleBxS"; 2023-09-25T16:29:40,184 | ^~~~~~ 2023-09-25T16:29:40,185 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxB’: 2023-09-25T16:29:40,185 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:660:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T16:29:40,186 660 | short intersect = intersectBulgesBulges(staticStem, 2023-09-25T16:29:40,186 | ^~~~~~~~~ 2023-09-25T16:29:40,187 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:650:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,187 650 | char *fnName = "getRotationAngleBxB"; 2023-09-25T16:29:40,188 | ^~~~~~ 2023-09-25T16:29:40,188 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_getRotationSign’: 2023-09-25T16:29:40,189 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘noIntersection’ not handled in switch [-Wswitch] 2023-09-25T16:29:40,189 64 | switch (it) { 2023-09-25T16:29:40,190 | ^~~~~~ 2023-09-25T16:29:40,190 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxL’ not handled in switch [-Wswitch] 2023-09-25T16:29:40,191 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxS’ not handled in switch [-Wswitch] 2023-09-25T16:29:40,191 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxL’ not handled in switch [-Wswitch] 2023-09-25T16:29:40,192 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxS’ not handled in switch [-Wswitch] 2023-09-25T16:29:40,192 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxB’ not handled in switch [-Wswitch] 2023-09-25T16:29:40,193 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxS’ not handled in switch [-Wswitch] 2023-09-25T16:29:40,193 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxB’ not handled in switch [-Wswitch] 2023-09-25T16:29:40,194 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘siblings’ not handled in switch [-Wswitch] 2023-09-25T16:29:40,194 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘exterior’ not handled in switch [-Wswitch] 2023-09-25T16:29:40,195 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:44:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,196 44 | char *fnName = "getRotationSign"; 2023-09-25T16:29:40,197 | ^~~~~~ 2023-09-25T16:29:40,197 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_getRotationSign’: 2023-09-25T16:29:40,198 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:105:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,198 105 | char *fnName = "getRotationSign"; 2023-09-25T16:29:40,199 | ^~~~~~ 2023-09-25T16:29:40,199 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘getRotationSign’: 2023-09-25T16:29:40,199 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:145:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,200 145 | char *fnName = "getRotationSign"; 2023-09-25T16:29:40,200 | ^~~~~~ 2023-09-25T16:29:40,201 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2023-09-25T16:29:40,201 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:222:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,202 222 | char *fnName = "fixIntersectionWithAncestor"; 2023-09-25T16:29:40,202 | ^~~~~~ 2023-09-25T16:29:40,203 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘handleIntersectionWithAncestor’: 2023-09-25T16:29:40,203 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:366:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,204 366 | char *fnName = "handleIntersectionWithAncestor"; 2023-09-25T16:29:40,204 | ^~~~~~ 2023-09-25T16:29:40,205 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_setupExteriorBoundingBoxes’: 2023-09-25T16:29:40,205 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:498:15: warning: unused variable ‘stemSouthX’ [-Wunused-variable] 2023-09-25T16:29:40,206 498 | double stemSouthX = loopX; 2023-09-25T16:29:40,206 | ^~~~~~~~~~ 2023-09-25T16:29:40,207 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:497:15: warning: unused variable ‘stemNorthX’ [-Wunused-variable] 2023-09-25T16:29:40,207 497 | double stemNorthX = loopX; 2023-09-25T16:29:40,208 | ^~~~~~~~~~ 2023-09-25T16:29:40,209 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:482:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,209 482 | char *fnName = "setupExteriorBoundingBoxes"; 2023-09-25T16:29:40,210 | ^~~~~~ 2023-09-25T16:29:40,211 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_setupExteriorBoundingBoxes’: 2023-09-25T16:29:40,211 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:625:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,212 625 | char *fnName = "setupExteriorBoundingBoxes"; 2023-09-25T16:29:40,212 | ^~~~~~ 2023-09-25T16:29:40,213 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE_setupExteriorBoundingBoxes’: 2023-09-25T16:29:40,213 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:715:21: warning: unused variable ‘it’ [-Wunused-variable] 2023-09-25T16:29:40,214 715 | intersectionType it = noIntersection; 2023-09-25T16:29:40,215 | ^~ 2023-09-25T16:29:40,215 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:695:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,216 695 | char *fnName = "setupExteriorBoundingBoxes"; 2023-09-25T16:29:40,217 | ^~~~~~ 2023-09-25T16:29:40,217 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘setupExteriorBoundingBoxes’: 2023-09-25T16:29:40,218 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:759:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,218 759 | char *fnName = "setupExteriorBoundingBoxes"; 2023-09-25T16:29:40,219 | ^~~~~~ 2023-09-25T16:29:40,219 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘checkNodeAgainstAncestors’: 2023-09-25T16:29:40,220 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:950:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,220 950 | char *fnName = "checkNodeAgainstAncestors"; 2023-09-25T16:29:40,221 | ^~~~~~ 2023-09-25T16:29:40,221 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc: In function ‘checkAndFixIntersections’: 2023-09-25T16:29:40,222 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:29:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,222 29 | char *fnName = "checkAndFixIntersections"; 2023-09-25T16:29:40,223 | ^~~~~~ 2023-09-25T16:29:40,225 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘checkRemainingIntersections’: 2023-09-25T16:29:40,226 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:75:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:29:40,226 75 | char *fnName = "checkRemainingIntersections"; 2023-09-25T16:29:40,227 | ^~~~~~ 2023-09-25T16:29:40,232 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘vrna_plot_coords_puzzler_pt’: 2023-09-25T16:29:40,233 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:505:13: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T16:29:40,234 505 | short intersect = checkRemainingIntersections(myX, 2023-09-25T16:29:40,234 | ^~~~~~~~~ 2023-09-25T16:29:40,236 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13: 2023-09-25T16:29:40,236 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc: At top level: 2023-09-25T16:29:40,237 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2023-09-25T16:29:40,238 126 | intToMotiv(const int _int); 2023-09-25T16:29:40,238 | ^~~~~~~~~~ 2023-09-25T16:29:40,239 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:16, 2023-09-25T16:29:40,239 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-09-25T16:29:40,240 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:135:1: warning: ‘printLBox’ declared ‘static’ but never defined [-Wunused-function] 2023-09-25T16:29:40,240 135 | printLBox(const loopBox *loop); 2023-09-25T16:29:40,241 | ^~~~~~~~~ 2023-09-25T16:29:40,242 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:139:1: warning: ‘printSBox’ declared ‘static’ but never defined [-Wunused-function] 2023-09-25T16:29:40,242 139 | printSBox(const stemBox *stem); 2023-09-25T16:29:40,243 | ^~~~~~~~~ 2023-09-25T16:29:40,244 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:224:1: warning: ‘printTree’ declared ‘static’ but never defined [-Wunused-function] 2023-09-25T16:29:40,244 224 | printTree(const treeNode *node, 2023-09-25T16:29:40,245 | ^~~~~~~~~ 2023-09-25T16:29:40,314 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:21: 2023-09-25T16:29:40,315 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:482:1: warning: ‘resolveExteriorChildIntersections’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,315 482 | resolveExteriorChildIntersections(treeNode *exteriorNode, 2023-09-25T16:29:40,316 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:40,316 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:305:1: warning: ‘resolveExteriorChildrenIntersectionAffin’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,317 305 | resolveExteriorChildrenIntersectionAffin(treeNode *exteriorNode, 2023-09-25T16:29:40,317 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:40,318 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:754:1: warning: ‘setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,318 754 | setupExteriorBoundingBoxes(treeNode *exterior, 2023-09-25T16:29:40,319 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:40,321 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:690:1: warning: ‘TENTATIVE_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,322 690 | TENTATIVE_setupExteriorBoundingBoxes(treeNode *exterior, 2023-09-25T16:29:40,323 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:40,324 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:620:1: warning: ‘TENTATIVE2_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,325 620 | TENTATIVE2_setupExteriorBoundingBoxes(treeNode *exterior, 2023-09-25T16:29:40,326 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:40,328 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:142:1: warning: ‘getRotationSign’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,329 142 | getRotationSign(const treeNode **const path, 2023-09-25T16:29:40,330 | ^~~~~~~~~~~~~~~ 2023-09-25T16:29:40,332 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:40:1: warning: ‘TENTATIVE3_getRotationSign’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,333 40 | TENTATIVE3_getRotationSign(treeNode **const path, 2023-09-25T16:29:40,334 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:40,335 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:111:1: warning: ‘checkBounds’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,336 111 | checkBounds(const double l1, 2023-09-25T16:29:40,338 | ^~~~~~~~~~~ 2023-09-25T16:29:40,339 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:471:1: warning: ‘TestLoopBulge’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,340 471 | TestLoopBulge(const double c[2], 2023-09-25T16:29:40,341 | ^~~~~~~~~~~~~ 2023-09-25T16:29:40,343 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:207:1: warning: ‘ClosestPtPointTriangle’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,344 207 | ClosestPtPointTriangle(const double p[2], 2023-09-25T16:29:40,345 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:40,346 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1056:1: warning: ‘getChildNode’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,347 1056 | getChildNode(treeNode *tree, 2023-09-25T16:29:40,349 | ^~~~~~~~~~~~ 2023-09-25T16:29:40,350 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1038:1: warning: ‘getStemCenter’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,351 1038 | getStemCenter(const treeNode *node, 2023-09-25T16:29:40,352 | ^~~~~~~~~~~~~ 2023-09-25T16:29:40,354 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:569:1: warning: ‘getExterior’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,355 569 | getExterior(treeNode *node) 2023-09-25T16:29:40,357 | ^~~~~~~~~~~ 2023-09-25T16:29:40,358 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:537:1: warning: ‘getPairedAngle’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,359 537 | getPairedAngle(const treeNode *node) 2023-09-25T16:29:40,360 | ^~~~~~~~~~~~~~ 2023-09-25T16:29:40,361 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:235:1: warning: ‘rotateStemBox’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,362 235 | rotateStemBox(stemBox *box, 2023-09-25T16:29:40,364 | ^~~~~~~~~~~~~ 2023-09-25T16:29:40,365 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:203:1: warning: ‘rotateLoopBox’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,366 203 | rotateLoopBox(loopBox *box, 2023-09-25T16:29:40,367 | ^~~~~~~~~~~~~ 2023-09-25T16:29:40,368 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,369 243 | getArcAngleDegree(const config *cfg, 2023-09-25T16:29:40,370 | ^~~~~~~~~~~~~~~~~ 2023-09-25T16:29:40,372 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,373 216 | cfgPrintConfig(config *cfg) 2023-09-25T16:29:40,374 | ^~~~~~~~~~~~~~ 2023-09-25T16:29:40,375 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,376 827 | sign(const double number) 2023-09-25T16:29:40,377 | ^~~~ 2023-09-25T16:29:40,377 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,378 816 | min(const double number1, 2023-09-25T16:29:40,379 | ^~~ 2023-09-25T16:29:40,379 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,380 530 | normalizeAngle(const double angle, 2023-09-25T16:29:40,380 | ^~~~~~~~~~~~~~ 2023-09-25T16:29:40,381 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14: 2023-09-25T16:29:40,381 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-09-25T16:29:40,382 116 | angleToDistance(const double radius, 2023-09-25T16:29:40,383 | ^~~~~~~~~~~~~~~ 2023-09-25T16:29:44,508 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2023-09-25T16:29:44,508 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:255:12: warning: ‘interiorChildAngle’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:29:44,509 255 | double diffToStraight = MATH_PI - interiorChildAngle; 2023-09-25T16:29:44,509 | ^~~~~~~~~~~~~~ 2023-09-25T16:29:44,510 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:228:10: note: ‘interiorChildAngle’ was declared here 2023-09-25T16:29:44,510 228 | double interiorChildAngle; 2023-09-25T16:29:44,511 | ^~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:46,101 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler/RNAturtle.o -fopenmp 2023-09-25T16:29:46,256 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-09-25T16:29:46,257 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-09-25T16:29:46,258 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:40: warning: argument 1 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:29:46,258 470 | isToTheRightPointVector(const double *lineStart, 2023-09-25T16:29:46,259 | ~~~~~~~~~~~~~~~^~~~~~~~~ 2023-09-25T16:29:46,259 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:102:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:29:46,260 102 | isToTheRightPointVector(const double lineStart[2], 2023-09-25T16:29:46,260 | ~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:29:46,261 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:471:40: warning: argument 2 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:29:46,261 471 | const double *lineVector, 2023-09-25T16:29:46,262 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2023-09-25T16:29:46,262 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:103:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:29:46,263 103 | const double lineVector[2], 2023-09-25T16:29:46,263 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2023-09-25T16:29:46,264 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:472:40: warning: argument 3 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:29:46,264 472 | const double *point) 2023-09-25T16:29:46,265 | ~~~~~~~~~~~~~~~^~~~~ 2023-09-25T16:29:46,265 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:104:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:29:46,266 104 | const double point[2]); 2023-09-25T16:29:46,267 | ~~~~~~~~~~~~~~^~~~~~~~ 2023-09-25T16:29:46,273 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-09-25T16:29:46,273 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:29:46,274 846 | double alpha[3]; 2023-09-25T16:29:46,275 | ^~~~~ 2023-09-25T16:29:46,303 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13: 2023-09-25T16:29:46,304 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc: At top level: 2023-09-25T16:29:46,304 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2023-09-25T16:29:46,305 126 | intToMotiv(const int _int); 2023-09-25T16:29:46,306 | ^~~~~~~~~~ 2023-09-25T16:29:46,320 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:705:1: warning: ‘cfgIsValid’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,321 705 | cfgIsValid(config *cfg, 2023-09-25T16:29:46,322 | ^~~~~~~~~~ 2023-09-25T16:29:46,322 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:648:1: warning: ‘cfgApplyChanges’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,323 648 | cfgApplyChanges(config *cfg, 2023-09-25T16:29:46,323 | ^~~~~~~~~~~~~~~ 2023-09-25T16:29:46,324 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,325 243 | getArcAngleDegree(const config *cfg, 2023-09-25T16:29:46,325 | ^~~~~~~~~~~~~~~~~ 2023-09-25T16:29:46,326 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,326 216 | cfgPrintConfig(config *cfg) 2023-09-25T16:29:46,327 | ^~~~~~~~~~~~~~ 2023-09-25T16:29:46,328 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:207:1: warning: ‘cfgFreeConfig’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,329 207 | cfgFreeConfig(config *cfg) 2023-09-25T16:29:46,329 | ^~~~~~~~~~~~~ 2023-09-25T16:29:46,329 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:184:1: warning: ‘cfgCloneConfig’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,330 184 | cfgCloneConfig(const config *cfg) 2023-09-25T16:29:46,330 | ^~~~~~~~~~~~~~ 2023-09-25T16:29:46,331 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,331 827 | sign(const double number) 2023-09-25T16:29:46,332 | ^~~~ 2023-09-25T16:29:46,332 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,333 816 | min(const double number1, 2023-09-25T16:29:46,333 | ^~~ 2023-09-25T16:29:46,334 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:788:1: warning: ‘normal’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,334 788 | normal(const double v[2], 2023-09-25T16:29:46,335 | ^~~~~~ 2023-09-25T16:29:46,335 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:747:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,336 747 | getCutPointsOfCircleAndLine(const double *center, 2023-09-25T16:29:46,336 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:46,337 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:632:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,337 632 | getCutPointsOfCircles(const double *c1, 2023-09-25T16:29:46,338 | ^~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:46,338 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:592:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,339 592 | translatePointByVector(const double *point, 2023-09-25T16:29:46,339 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:46,340 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:579:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,341 579 | rotateVectorByAngle(const double *vector, 2023-09-25T16:29:46,342 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:46,342 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,343 530 | normalizeAngle(const double angle, 2023-09-25T16:29:46,344 | ^~~~~~~~~~~~~~ 2023-09-25T16:29:46,344 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:514:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,345 514 | anglePtPtPt2D(const double *p1, 2023-09-25T16:29:46,345 | ^~~~~~~~~~~~~ 2023-09-25T16:29:46,346 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,347 470 | isToTheRightPointVector(const double *lineStart, 2023-09-25T16:29:46,347 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:46,348 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:383:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,348 383 | vectorLength2DSquared(const double vector[2]) 2023-09-25T16:29:46,349 | ^~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:46,350 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:366:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,350 366 | toRad(double angle) 2023-09-25T16:29:46,351 | ^~~~~ 2023-09-25T16:29:46,352 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14: 2023-09-25T16:29:46,353 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,353 116 | angleToDistance(const double radius, 2023-09-25T16:29:46,354 | ^~~~~~~~~~~~~~~ 2023-09-25T16:29:46,355 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,355 108 | distanceToAngle(const double radius, 2023-09-25T16:29:46,356 | ^~~~~~~~~~~~~~~ 2023-09-25T16:29:46,356 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2023-09-25T16:29:46,357 62 | bubblesort(const int numValues, 2023-09-25T16:29:46,357 | ^~~~~~~~~~ 2023-09-25T16:29:47,365 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/alignments.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/alignments.o -fopenmp 2023-09-25T16:29:47,681 src/ViennaRNA/plotting/alignments.c: In function ‘vrna_file_PS_aln_slice’: 2023-09-25T16:29:47,682 src/ViennaRNA/plotting/alignments.c:147:34: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:29:47,683 147 | columnWidth = (columns == 0) ? length : columns; 2023-09-25T16:29:47,683 | ^~~~~~ 2023-09-25T16:29:47,684 src/ViennaRNA/plotting/alignments.c:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:47,684 245 | for (i = start; i <= end; i++) { 2023-09-25T16:29:47,685 | ^~ 2023-09-25T16:29:47,685 src/ViennaRNA/plotting/alignments.c:247:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:47,686 247 | if ((j > i) && (j <= end)) { 2023-09-25T16:29:47,687 | ^~ 2023-09-25T16:29:47,687 src/ViennaRNA/plotting/alignments.c:327:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:47,688 327 | if (length - currPos < max_len) 2023-09-25T16:29:47,689 | ^ 2023-09-25T16:29:47,689 src/ViennaRNA/plotting/alignments.c:334:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:29:47,690 334 | for (j = 0; j < (currPos + strlen(tmpBuffer)); j++) 2023-09-25T16:29:47,690 | ^ 2023-09-25T16:29:47,700 In file included from src/ViennaRNA/plotting/alignments.c:26: 2023-09-25T16:29:47,701 src/ViennaRNA/plotting/ps_helpers.inc: At top level: 2023-09-25T16:29:47,701 src/ViennaRNA/plotting/ps_helpers.inc:134:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2023-09-25T16:29:47,702 134 | print_PS_coords(FILE *fh, 2023-09-25T16:29:47,703 | ^~~~~~~~~~~~~~~ 2023-09-25T16:29:47,703 src/ViennaRNA/plotting/ps_helpers.inc:114:1: warning: ‘print_PS_sequence’ defined but not used [-Wunused-function] 2023-09-25T16:29:47,704 114 | print_PS_sequence(FILE *fh, 2023-09-25T16:29:47,704 | ^~~~~~~~~~~~~~~~~ 2023-09-25T16:29:48,220 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/layouts.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/layouts.o -fopenmp 2023-09-25T16:29:48,475 src/ViennaRNA/plotting/layouts.c: In function ‘simple_xy_coordinates’: 2023-09-25T16:29:48,475 src/ViennaRNA/plotting/layouts.c:547:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:29:48,476 547 | int ret, n; 2023-09-25T16:29:48,477 | ^~~ 2023-09-25T16:29:48,478 src/ViennaRNA/plotting/layouts.c: In function ‘simple_circplot_coordinates’: 2023-09-25T16:29:48,479 src/ViennaRNA/plotting/layouts.c:570:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:29:48,480 570 | int ret, n; 2023-09-25T16:29:48,480 | ^~~ 2023-09-25T16:29:48,967 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/naview/naview.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/naview/naview.o -fopenmp 2023-09-25T16:29:50,053 In function ‘determine_radius’, 2023-09-25T16:29:50,053 inlined from ‘traverse_loop’ at src/ViennaRNA/plotting/naview/naview.c:569:3: 2023-09-25T16:29:50,054 src/ViennaRNA/plotting/naview/naview.c:963:22: warning: ‘imindit’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:29:50,054 963 | lp->connections[imindit]->extruded = true; 2023-09-25T16:29:50,055 | ^ 2023-09-25T16:29:50,055 src/ViennaRNA/plotting/naview/naview.c: In function ‘traverse_loop’: 2023-09-25T16:29:50,056 src/ViennaRNA/plotting/naview/naview.c:928:21: note: ‘imindit’ was declared here 2023-09-25T16:29:50,057 928 | int i,j,end,start,imindit; 2023-09-25T16:29:50,058 | ^~~~~~~ 2023-09-25T16:29:50,058 src/ViennaRNA/plotting/naview/naview.c:629:27: warning: ‘imaxloop’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:29:50,059 629 | cp = lp->connections[icend]; 2023-09-25T16:29:50,059 | ^ 2023-09-25T16:29:50,060 src/ViennaRNA/plotting/naview/naview.c:540:7: note: ‘imaxloop’ was declared here 2023-09-25T16:29:50,061 540 | int imaxloop; 2023-09-25T16:29:50,061 | ^~~~~~~~ 2023-09-25T16:29:50,801 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/plot_utils.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/plot_utils.o -fopenmp 2023-09-25T16:29:50,940 src/ViennaRNA/plotting/plot_utils.c: In function ‘vrna_annotate_covar_pairs’: 2023-09-25T16:29:50,941 src/ViennaRNA/plotting/plot_utils.c:205:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:50,942 205 | for (s = 0; s < n_seq; s++) { 2023-09-25T16:29:50,942 | ^ 2023-09-25T16:29:51,281 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/probabilities.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/probabilities.o -fopenmp 2023-09-25T16:29:53,028 src/ViennaRNA/plotting/probabilities.c: In function ‘vrna_plot_dp_EPS’: 2023-09-25T16:29:53,029 src/ViennaRNA/plotting/probabilities.c:296:62: warning: variable ‘linright_num’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:29:53,030 296 | linbottom_size, linleft_num, linleft_size, linright_num, 2023-09-25T16:29:53,030 | ^~~~~~~~~~~~ 2023-09-25T16:29:53,031 src/ViennaRNA/plotting/probabilities.c:296:35: warning: variable ‘linleft_num’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:29:53,031 296 | linbottom_size, linleft_num, linleft_size, linright_num, 2023-09-25T16:29:53,032 | ^~~~~~~~~~~ 2023-09-25T16:29:53,032 src/ViennaRNA/plotting/probabilities.c:295:47: warning: variable ‘linbottom_num’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:29:53,033 295 | int i, lintop_num, lintop_size, linbottom_num, 2023-09-25T16:29:53,034 | ^~~~~~~~~~~~~ 2023-09-25T16:29:53,034 src/ViennaRNA/plotting/probabilities.c:295:22: warning: variable ‘lintop_num’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:29:53,035 295 | int i, lintop_num, lintop_size, linbottom_num, 2023-09-25T16:29:53,035 | ^~~~~~~~~~ 2023-09-25T16:29:53,044 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_accessibility’: 2023-09-25T16:29:53,044 src/ViennaRNA/plotting/probabilities.c:847:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:53,045 847 | for(i = 0; i < length; i++){ 2023-09-25T16:29:53,045 | ^ 2023-09-25T16:29:53,046 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_ud_motif_prob’: 2023-09-25T16:29:53,047 src/ViennaRNA/plotting/probabilities.c:880:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:29:53,047 880 | for(i = 0; i < actual_length; i++, actual_pos++){ 2023-09-25T16:29:53,048 | ^ 2023-09-25T16:29:53,071 In file included from src/ViennaRNA/plotting/probabilities.c:28: 2023-09-25T16:29:53,072 src/ViennaRNA/plotting/ps_helpers.inc: At top level: 2023-09-25T16:29:53,073 src/ViennaRNA/plotting/ps_helpers.inc:134:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2023-09-25T16:29:53,073 134 | print_PS_coords(FILE *fh, 2023-09-25T16:29:53,074 | ^~~~~~~~~~~~~~~ 2023-09-25T16:29:54,718 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/structures.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/structures.o -fopenmp 2023-09-25T16:29:55,644 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/svgArcs.inc:14, 2023-09-25T16:29:55,729 from src/ViennaRNA/plotting/structures.c:28: 2023-09-25T16:29:55,730 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:40: warning: argument 1 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:29:55,731 470 | isToTheRightPointVector(const double *lineStart, 2023-09-25T16:29:55,732 | ~~~~~~~~~~~~~~~^~~~~~~~~ 2023-09-25T16:29:55,733 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:102:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:29:55,734 102 | isToTheRightPointVector(const double lineStart[2], 2023-09-25T16:29:55,735 | ~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:29:55,736 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:471:40: warning: argument 2 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:29:55,737 471 | const double *lineVector, 2023-09-25T16:29:55,738 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2023-09-25T16:29:55,739 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:103:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:29:55,740 103 | const double lineVector[2], 2023-09-25T16:29:55,741 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2023-09-25T16:29:55,742 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:472:40: warning: argument 3 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:29:55,743 472 | const double *point) 2023-09-25T16:29:55,744 | ~~~~~~~~~~~~~~~^~~~~ 2023-09-25T16:29:55,744 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:104:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:29:55,745 104 | const double point[2]); 2023-09-25T16:29:55,746 | ~~~~~~~~~~~~~~^~~~~~~~ 2023-09-25T16:29:55,747 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-09-25T16:29:55,748 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:29:55,749 846 | double alpha[3]; 2023-09-25T16:29:55,750 | ^~~~~ 2023-09-25T16:29:55,942 src/ViennaRNA/plotting/structures.c: In function ‘rnaplot_EPS’: 2023-09-25T16:29:55,943 src/ViennaRNA/plotting/structures.c:171:18: warning: unused variable ‘Y’ [-Wunused-variable] 2023-09-25T16:29:55,944 171 | float *X, *Y; 2023-09-25T16:29:55,951 | ^ 2023-09-25T16:29:55,952 src/ViennaRNA/plotting/structures.c:171:14: warning: unused variable ‘X’ [-Wunused-variable] 2023-09-25T16:29:55,952 171 | float *X, *Y; 2023-09-25T16:29:55,953 | ^ 2023-09-25T16:29:55,954 src/ViennaRNA/plotting/structures.c:168:31: warning: unused variable ‘ymax’ [-Wunused-variable] 2023-09-25T16:29:55,954 168 | float xmin, xmax, ymin, ymax; 2023-09-25T16:29:55,955 | ^~~~ 2023-09-25T16:29:55,956 src/ViennaRNA/plotting/structures.c:168:25: warning: unused variable ‘ymin’ [-Wunused-variable] 2023-09-25T16:29:55,957 168 | float xmin, xmax, ymin, ymax; 2023-09-25T16:29:55,957 | ^~~~ 2023-09-25T16:29:55,958 src/ViennaRNA/plotting/structures.c:168:19: warning: unused variable ‘xmax’ [-Wunused-variable] 2023-09-25T16:29:55,959 168 | float xmin, xmax, ymin, ymax; 2023-09-25T16:29:55,960 | ^~~~ 2023-09-25T16:29:55,961 src/ViennaRNA/plotting/structures.c:168:13: warning: unused variable ‘xmin’ [-Wunused-variable] 2023-09-25T16:29:55,962 168 | float xmin, xmax, ymin, ymax; 2023-09-25T16:29:55,962 | ^~~~ 2023-09-25T16:29:55,963 src/ViennaRNA/plotting/structures.c: In function ‘PS_rna_plot_snoop_a’: 2023-09-25T16:29:55,964 src/ViennaRNA/plotting/structures.c:631:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:29:55,964 631 | if (cut_point > 0 && cut_point <= strlen(string)) 2023-09-25T16:29:55,965 | ^~ 2023-09-25T16:29:55,991 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: At top level: 2023-09-25T16:29:55,992 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:839:1: warning: ‘circle’ defined but not used [-Wunused-function] 2023-09-25T16:29:55,993 839 | circle(const double P1[2], 2023-09-25T16:29:56,003 | ^~~~~~ 2023-09-25T16:29:56,004 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-09-25T16:29:56,005 827 | sign(const double number) 2023-09-25T16:29:56,006 | ^~~~ 2023-09-25T16:29:56,007 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-09-25T16:29:56,007 816 | min(const double number1, 2023-09-25T16:29:56,008 | ^~~ 2023-09-25T16:29:56,009 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:788:1: warning: ‘normal’ defined but not used [-Wunused-function] 2023-09-25T16:29:56,009 788 | normal(const double v[2], 2023-09-25T16:29:56,010 | ^~~~~~ 2023-09-25T16:29:56,011 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:778:1: warning: ‘vector’ defined but not used [-Wunused-function] 2023-09-25T16:29:56,011 778 | vector(const double pStart[2], 2023-09-25T16:29:56,012 | ^~~~~~ 2023-09-25T16:29:56,012 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:747:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2023-09-25T16:29:56,013 747 | getCutPointsOfCircleAndLine(const double *center, 2023-09-25T16:29:56,014 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:56,014 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:632:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2023-09-25T16:29:56,015 632 | getCutPointsOfCircles(const double *c1, 2023-09-25T16:29:56,015 | ^~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:56,016 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:592:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2023-09-25T16:29:56,017 592 | translatePointByVector(const double *point, 2023-09-25T16:29:56,018 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:56,018 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:579:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2023-09-25T16:29:56,020 579 | rotateVectorByAngle(const double *vector, 2023-09-25T16:29:56,020 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:56,021 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-09-25T16:29:56,022 530 | normalizeAngle(const double angle, 2023-09-25T16:29:56,023 | ^~~~~~~~~~~~~~ 2023-09-25T16:29:56,024 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:514:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2023-09-25T16:29:56,024 514 | anglePtPtPt2D(const double *p1, 2023-09-25T16:29:56,025 | ^~~~~~~~~~~~~ 2023-09-25T16:29:56,026 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2023-09-25T16:29:56,027 470 | isToTheRightPointVector(const double *lineStart, 2023-09-25T16:29:56,031 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:56,032 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:383:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2023-09-25T16:29:56,033 383 | vectorLength2DSquared(const double vector[2]) 2023-09-25T16:29:56,033 | ^~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:29:56,034 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:366:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2023-09-25T16:29:56,035 366 | toRad(double angle) 2023-09-25T16:29:56,035 | ^~~~~ 2023-09-25T16:29:56,036 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:359:1: warning: ‘toDegree’ defined but not used [-Wunused-function] 2023-09-25T16:29:56,037 359 | toDegree(double angle) 2023-09-25T16:29:56,038 | ^~~~~~~~ 2023-09-25T16:29:56,039 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14: 2023-09-25T16:29:56,039 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-09-25T16:29:56,040 116 | angleToDistance(const double radius, 2023-09-25T16:29:56,041 | ^~~~~~~~~~~~~~~ 2023-09-25T16:29:56,041 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2023-09-25T16:29:56,042 108 | distanceToAngle(const double radius, 2023-09-25T16:29:56,043 | ^~~~~~~~~~~~~~~ 2023-09-25T16:29:56,043 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2023-09-25T16:29:56,044 62 | bubblesort(const int numValues, 2023-09-25T16:29:56,044 | ^~~~~~~~~~ 2023-09-25T16:29:57,774 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/ribo.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ribo.o -fopenmp 2023-09-25T16:29:59,445 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/search/BoyerMoore.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/search/BoyerMoore.o -fopenmp 2023-09-25T16:30:01,504 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/sequence.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sequence.o -fopenmp 2023-09-25T16:30:04,725 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/snofold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/snofold.o -fopenmp 2023-09-25T16:30:05,565 src/ViennaRNA/snofold.c: In function ‘snofold’: 2023-09-25T16:30:05,566 src/ViennaRNA/snofold.c:369:30: warning: variable ‘bonus_cnt’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:05,566 369 | int length, energy, bonus, bonus_cnt, s; 2023-09-25T16:30:05,567 | ^~~~~~~~~ 2023-09-25T16:30:05,568 src/ViennaRNA/snofold.c:369:23: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:05,569 369 | int length, energy, bonus, bonus_cnt, s; 2023-09-25T16:30:05,569 | ^~~~~ 2023-09-25T16:30:05,572 src/ViennaRNA/snofold.c: In function ‘alisnofold’: 2023-09-25T16:30:05,573 src/ViennaRNA/snofold.c:571:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:30:05,573 571 | if (strlen(strings[s]) != length) 2023-09-25T16:30:05,574 | ^~ 2023-09-25T16:30:05,578 src/ViennaRNA/snofold.c: In function ‘alifill_arrays’: 2023-09-25T16:30:05,579 src/ViennaRNA/snofold.c:603:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:05,579 603 | int bonus, n_seq, s; 2023-09-25T16:30:05,580 | ^~~~~ 2023-09-25T16:30:05,583 src/ViennaRNA/snofold.c: In function ‘alibacktrack’: 2023-09-25T16:30:05,584 src/ViennaRNA/snofold.c:767:34: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:05,584 767 | int ml, ss, cij, traced, i1, j1, p, q; 2023-09-25T16:30:05,585 | ^~ 2023-09-25T16:30:05,586 src/ViennaRNA/snofold.c:767:30: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:05,587 767 | int ml, ss, cij, traced, i1, j1, p, q; 2023-09-25T16:30:05,588 | ^~ 2023-09-25T16:30:05,588 src/ViennaRNA/snofold.c:754:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:05,589 754 | int bonus, n_seq, *type; 2023-09-25T16:30:05,589 | ^~~~~ 2023-09-25T16:30:05,596 src/ViennaRNA/snofold.c: In function ‘backtrack’: 2023-09-25T16:30:05,597 src/ViennaRNA/snofold.c:1132:30: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:05,597 1132 | int ml, cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2023-09-25T16:30:05,598 | ^~ 2023-09-25T16:30:05,599 src/ViennaRNA/snofold.c:1132:26: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:05,599 1132 | int ml, cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2023-09-25T16:30:05,600 | ^~ 2023-09-25T16:30:05,601 src/ViennaRNA/snofold.c: In function ‘alisnobacktrack_fold_from_pair’: 2023-09-25T16:30:05,601 src/ViennaRNA/snofold.c:1290:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:30:05,602 1290 | if (strlen(strings[s]) != length) 2023-09-25T16:30:05,603 | ^~ 2023-09-25T16:30:05,634 src/ViennaRNA/snofold.c: At top level: 2023-09-25T16:30:05,635 src/ViennaRNA/snofold.c:154:15: warning: ‘alpha’ defined but not used [-Wunused-variable] 2023-09-25T16:30:05,636 154 | PRIVATE char alpha[] = "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz"; 2023-09-25T16:30:05,637 | ^~~~~ 2023-09-25T16:30:08,064 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/snoop.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/snoop.o -fopenmp 2023-09-25T16:30:08,332 src/ViennaRNA/snoop.c: In function ‘alisnoopfold’: 2023-09-25T16:30:08,333 src/ViennaRNA/snoop.c:249:22: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,334 249 | int i, j, E, l1, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T16:30:08,334 | ^~ 2023-09-25T16:30:08,343 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack’: 2023-09-25T16:30:08,344 src/ViennaRNA/snoop.c:836:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,344 836 | int min_k, max_k; 2023-09-25T16:30:08,345 | ^~~~~ 2023-09-25T16:30:08,346 src/ViennaRNA/snoop.c:836:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,346 836 | int min_k, max_k; 2023-09-25T16:30:08,347 | ^~~~~ 2023-09-25T16:30:08,358 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt’: 2023-09-25T16:30:08,359 src/ViennaRNA/snoop.c:1141:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,360 1141 | int Loop_E; 2023-09-25T16:30:08,360 | ^~~~~~ 2023-09-25T16:30:08,361 src/ViennaRNA/snoop.c:1139:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,362 1139 | int Loop_D; 2023-09-25T16:30:08,362 | ^~~~~~ 2023-09-25T16:30:08,365 src/ViennaRNA/snoop.c:1138:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,366 1138 | int Duplex_El, Duplex_Er; 2023-09-25T16:30:08,366 | ^~~~~~~~~ 2023-09-25T16:30:08,367 src/ViennaRNA/snoop.c:1138:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,367 1138 | int Duplex_El, Duplex_Er; 2023-09-25T16:30:08,368 | ^~~~~~~~~ 2023-09-25T16:30:08,369 src/ViennaRNA/snoop.c:1112:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,369 1112 | int max_pos; 2023-09-25T16:30:08,369 | ^~~~~~~ 2023-09-25T16:30:08,370 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list’: 2023-09-25T16:30:08,371 src/ViennaRNA/snoop.c:1433:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,371 1433 | int min_k, max_k; 2023-09-25T16:30:08,372 | ^~~~~ 2023-09-25T16:30:08,372 src/ViennaRNA/snoop.c:1433:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,373 1433 | int min_k, max_k; 2023-09-25T16:30:08,373 | ^~~~~ 2023-09-25T16:30:08,378 src/ViennaRNA/snoop.c:1376:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,379 1376 | int Loop_E; 2023-09-25T16:30:08,380 | ^~~~~~ 2023-09-25T16:30:08,380 src/ViennaRNA/snoop.c:1374:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,380 1374 | int Loop_D; 2023-09-25T16:30:08,381 | ^~~~~~ 2023-09-25T16:30:08,381 src/ViennaRNA/snoop.c:1373:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,382 1373 | int Duplex_El, Duplex_Er; 2023-09-25T16:30:08,382 | ^~~~~~~~~ 2023-09-25T16:30:08,383 src/ViennaRNA/snoop.c:1373:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,383 1373 | int Duplex_El, Duplex_Er; 2023-09-25T16:30:08,384 | ^~~~~~~~~ 2023-09-25T16:30:08,385 src/ViennaRNA/snoop.c:1347:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,385 1347 | int max_pos; 2023-09-25T16:30:08,386 | ^~~~~~~ 2023-09-25T16:30:08,391 src/ViennaRNA/snoop.c: In function ‘snoopfold’: 2023-09-25T16:30:08,393 src/ViennaRNA/snoop.c:1818:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,393 1818 | int min_k, max_k; 2023-09-25T16:30:08,394 | ^~~~~ 2023-09-25T16:30:08,394 src/ViennaRNA/snoop.c:1818:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,395 1818 | int min_k, max_k; 2023-09-25T16:30:08,396 | ^~~~~ 2023-09-25T16:30:08,399 src/ViennaRNA/snoop.c:1764:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,400 1764 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T16:30:08,401 | ^~ 2023-09-25T16:30:08,404 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS_fill’: 2023-09-25T16:30:08,406 src/ViennaRNA/snoop.c:2015:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,406 2015 | int min_k, max_k; 2023-09-25T16:30:08,407 | ^~~~~ 2023-09-25T16:30:08,408 src/ViennaRNA/snoop.c:2015:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,408 2015 | int min_k, max_k; 2023-09-25T16:30:08,409 | ^~~~~ 2023-09-25T16:30:08,412 src/ViennaRNA/snoop.c:1959:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,413 1959 | int Loop_E; 2023-09-25T16:30:08,413 | ^~~~~~ 2023-09-25T16:30:08,413 src/ViennaRNA/snoop.c:1957:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,414 1957 | int Loop_D; 2023-09-25T16:30:08,414 | ^~~~~~ 2023-09-25T16:30:08,415 src/ViennaRNA/snoop.c:1956:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,415 1956 | int Duplex_El, Duplex_Er; 2023-09-25T16:30:08,416 | ^~~~~~~~~ 2023-09-25T16:30:08,417 src/ViennaRNA/snoop.c:1956:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,417 1956 | int Duplex_El, Duplex_Er; 2023-09-25T16:30:08,418 | ^~~~~~~~~ 2023-09-25T16:30:08,418 src/ViennaRNA/snoop.c:1947:42: warning: variable ‘j_min’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,419 1947 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T16:30:08,419 | ^~~~~ 2023-09-25T16:30:08,420 src/ViennaRNA/snoop.c:1947:31: warning: variable ‘i_min’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,421 1947 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T16:30:08,421 | ^~~~~ 2023-09-25T16:30:08,425 src/ViennaRNA/snoop.c: In function ‘snoop_subopt’: 2023-09-25T16:30:08,426 src/ViennaRNA/snoop.c:2102:25: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,427 2102 | int i, j, n1, n2, E, n_subopt = 0, n_max; 2023-09-25T16:30:08,428 | ^ 2023-09-25T16:30:08,433 src/ViennaRNA/snoop.c: In function ‘snoop_subopt_XS’: 2023-09-25T16:30:08,435 src/ViennaRNA/snoop.c:2437:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,436 2437 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2023-09-25T16:30:08,436 | ^~~~ 2023-09-25T16:30:08,437 src/ViennaRNA/snoop.c:2437:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,438 2437 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2023-09-25T16:30:08,438 | ^~~ 2023-09-25T16:30:08,440 src/ViennaRNA/snoop.c:2304:7: warning: variable ‘u’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,440 2304 | int u; 2023-09-25T16:30:08,441 | ^ 2023-09-25T16:30:08,442 src/ViennaRNA/snoop.c:2298:7: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,442 2298 | int Loop_D; 2023-09-25T16:30:08,443 | ^~~~~~ 2023-09-25T16:30:08,444 src/ViennaRNA/snoop.c:2297:29: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,444 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-09-25T16:30:08,444 | ^~~~~~ 2023-09-25T16:30:08,445 src/ViennaRNA/snoop.c:2297:18: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,446 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-09-25T16:30:08,446 | ^~~~~~~~~ 2023-09-25T16:30:08,447 src/ViennaRNA/snoop.c:2297:7: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,448 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-09-25T16:30:08,449 | ^~~~~~~~~ 2023-09-25T16:30:08,449 src/ViennaRNA/snoop.c:2289:16: warning: variable ‘n_max’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,450 2289 | int i, j, E, n_max; 2023-09-25T16:30:08,450 | ^~~~~ 2023-09-25T16:30:08,451 src/ViennaRNA/snoop.c:2289:13: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,452 2289 | int i, j, E, n_max; 2023-09-25T16:30:08,452 | ^ 2023-09-25T16:30:08,457 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack’: 2023-09-25T16:30:08,459 src/ViennaRNA/snoop.c:2588:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,459 2588 | int min_k, max_k; 2023-09-25T16:30:08,460 | ^~~~~ 2023-09-25T16:30:08,461 src/ViennaRNA/snoop.c:2588:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,462 2588 | int min_k, max_k; 2023-09-25T16:30:08,462 | ^~~~~ 2023-09-25T16:30:08,474 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2023-09-25T16:30:08,477 src/ViennaRNA/snoop.c:2904:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,477 2904 | int min_k, max_k; 2023-09-25T16:30:08,477 | ^~~~~ 2023-09-25T16:30:08,479 src/ViennaRNA/snoop.c:2904:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,480 2904 | int min_k, max_k; 2023-09-25T16:30:08,480 | ^~~~~ 2023-09-25T16:30:08,486 src/ViennaRNA/snoop.c:2839:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,487 2839 | int Loop_E; 2023-09-25T16:30:08,487 | ^~~~~~ 2023-09-25T16:30:08,489 src/ViennaRNA/snoop.c:2837:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,489 2837 | int Loop_D; 2023-09-25T16:30:08,490 | ^~~~~~ 2023-09-25T16:30:08,491 src/ViennaRNA/snoop.c:2836:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,492 2836 | int Duplex_El, Duplex_Er; 2023-09-25T16:30:08,493 | ^~~~~~~~~ 2023-09-25T16:30:08,494 src/ViennaRNA/snoop.c:2836:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,494 2836 | int Duplex_El, Duplex_Er; 2023-09-25T16:30:08,495 | ^~~~~~~~~ 2023-09-25T16:30:08,496 src/ViennaRNA/snoop.c:2821:7: warning: variable ‘max_pos_j’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,497 2821 | int max_pos_j = INF; 2023-09-25T16:30:08,497 | ^~~~~~~~~ 2023-09-25T16:30:08,499 src/ViennaRNA/snoop.c:2807:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,499 2807 | int max_pos; 2023-09-25T16:30:08,500 | ^~~~~~~ 2023-09-25T16:30:08,504 src/ViennaRNA/snoop.c: In function ‘find_max_snoop_XS’: 2023-09-25T16:30:08,507 src/ViennaRNA/snoop.c:3152:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,508 3152 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2023-09-25T16:30:08,508 | ^~~~ 2023-09-25T16:30:08,510 src/ViennaRNA/snoop.c:3152:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:08,511 3152 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2023-09-25T16:30:08,511 | ^~~ 2023-09-25T16:30:09,604 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack.constprop’: 2023-09-25T16:30:09,606 src/ViennaRNA/snoop.c:2771:3: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:30:09,607 2771 | free(struc_loop); 2023-09-25T16:30:09,607 | ^~~~~~~~~~~~~~~~ 2023-09-25T16:30:09,608 src/ViennaRNA/snoop.c:2524:12: note: ‘struc_loop’ was declared here 2023-09-25T16:30:09,609 2524 | char *struc_loop; 2023-09-25T16:30:09,610 | ^~~~~~~~~~ 2023-09-25T16:30:10,182 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack.constprop’: 2023-09-25T16:30:10,199 src/ViennaRNA/snoop.c:1074:3: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:30:10,199 1074 | free(struc_loop); 2023-09-25T16:30:10,200 | ^~~~~~~~~~~~~~~~ 2023-09-25T16:30:10,201 src/ViennaRNA/snoop.c:736:10: note: ‘struc_loop’ was declared here 2023-09-25T16:30:10,202 736 | char *struc_loop; 2023-09-25T16:30:10,203 | ^~~~~~~~~~ 2023-09-25T16:30:14,054 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS’: 2023-09-25T16:30:14,058 src/ViennaRNA/snoop.c:3374:12: warning: ‘u’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:30:14,059 3374 | return mfe; 2023-09-25T16:30:14,060 | ^~~ 2023-09-25T16:30:14,061 src/ViennaRNA/snoop.c:3232:13: note: ‘u’ was declared here 2023-09-25T16:30:14,061 3232 | int u; 2023-09-25T16:30:14,062 | ^ 2023-09-25T16:30:14,063 src/ViennaRNA/snoop.c:3448:12: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:30:14,064 3448 | char *struc_loop; 2023-09-25T16:30:14,065 | ^~~~~~~~~~ 2023-09-25T16:30:15,126 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2023-09-25T16:30:15,129 src/ViennaRNA/snoop.c:2992:19: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:30:15,129 2992 | position_j[i] = min_j_colonne; 2023-09-25T16:30:15,130 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T16:30:15,135 src/ViennaRNA/snoop.c:2820:7: note: ‘min_j_colonne’ was declared here 2023-09-25T16:30:15,136 2820 | int min_j_colonne; 2023-09-25T16:30:15,137 | ^~~~~~~~~~~~~ 2023-09-25T16:30:15,858 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/special_const.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/special_const.o -fopenmp 2023-09-25T16:30:15,951 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/stringdist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/stringdist.o -fopenmp 2023-09-25T16:30:16,932 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/subopt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/subopt.o -fopenmp 2023-09-25T16:30:17,257 In file included from src/ViennaRNA/subopt.c:38: 2023-09-25T16:30:17,258 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-09-25T16:30:17,259 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,259 865 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:30:17,260 | ^ 2023-09-25T16:30:17,261 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-09-25T16:30:17,262 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,262 898 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:30:17,263 | ^ 2023-09-25T16:30:17,264 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-09-25T16:30:17,264 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,265 969 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,265 | ^ 2023-09-25T16:30:17,266 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-09-25T16:30:17,266 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,267 993 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,268 | ^ 2023-09-25T16:30:17,268 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-09-25T16:30:17,269 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,269 1121 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,270 | ^ 2023-09-25T16:30:17,270 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-09-25T16:30:17,271 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,271 1145 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,272 | ^ 2023-09-25T16:30:17,272 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-09-25T16:30:17,273 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,274 1292 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:30:17,274 | ^ 2023-09-25T16:30:17,275 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-09-25T16:30:17,276 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,276 1320 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:30:17,277 | ^ 2023-09-25T16:30:17,278 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-09-25T16:30:17,279 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,279 1348 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:30:17,280 | ^ 2023-09-25T16:30:17,280 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-09-25T16:30:17,281 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,282 1404 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,282 | ^ 2023-09-25T16:30:17,283 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-09-25T16:30:17,284 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,284 1426 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,285 | ^ 2023-09-25T16:30:17,286 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-09-25T16:30:17,286 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,287 1450 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,288 | ^ 2023-09-25T16:30:17,288 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-09-25T16:30:17,289 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,289 1596 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:30:17,290 | ^ 2023-09-25T16:30:17,290 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-09-25T16:30:17,291 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,291 1628 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:30:17,292 | ^ 2023-09-25T16:30:17,293 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-09-25T16:30:17,293 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,294 1677 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,294 | ^ 2023-09-25T16:30:17,295 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-09-25T16:30:17,295 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,296 1698 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,297 | ^ 2023-09-25T16:30:17,303 In file included from src/ViennaRNA/subopt.c:40: 2023-09-25T16:30:17,304 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-09-25T16:30:17,305 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,305 71 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,306 | ^ 2023-09-25T16:30:17,307 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-09-25T16:30:17,308 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,308 110 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,309 | ^ 2023-09-25T16:30:17,310 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-09-25T16:30:17,311 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,312 141 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,313 | ^ 2023-09-25T16:30:17,313 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-09-25T16:30:17,314 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,315 183 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,316 | ^ 2023-09-25T16:30:17,317 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-09-25T16:30:17,318 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,319 222 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,321 | ^ 2023-09-25T16:30:17,323 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-09-25T16:30:17,324 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,325 726 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,325 | ^ 2023-09-25T16:30:17,326 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-09-25T16:30:17,326 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:17,327 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T16:30:17,328 | ^~ 2023-09-25T16:30:17,328 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-09-25T16:30:17,329 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,329 780 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,330 | ^ 2023-09-25T16:30:17,330 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-09-25T16:30:17,331 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,331 821 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,332 | ^ 2023-09-25T16:30:17,333 In file included from src/ViennaRNA/subopt.c:41: 2023-09-25T16:30:17,333 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-09-25T16:30:17,334 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,334 76 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,335 | ^ 2023-09-25T16:30:17,336 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-09-25T16:30:17,336 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,337 95 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,338 | ^ 2023-09-25T16:30:17,338 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-09-25T16:30:17,339 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,340 124 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,341 | ^ 2023-09-25T16:30:17,341 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-09-25T16:30:17,342 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,343 155 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,344 | ^ 2023-09-25T16:30:17,344 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-09-25T16:30:17,345 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,346 328 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,347 | ^ 2023-09-25T16:30:17,348 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-09-25T16:30:17,348 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,349 397 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,349 | ^ 2023-09-25T16:30:17,350 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-09-25T16:30:17,350 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,351 530 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,351 | ^ 2023-09-25T16:30:17,352 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-09-25T16:30:17,352 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,353 663 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,353 | ^ 2023-09-25T16:30:17,354 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-09-25T16:30:17,354 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,355 802 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,355 | ^ 2023-09-25T16:30:17,356 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-09-25T16:30:17,357 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,357 849 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:30:17,358 | ^ 2023-09-25T16:30:17,359 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-09-25T16:30:17,359 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,360 888 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,361 | ^ 2023-09-25T16:30:17,361 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-09-25T16:30:17,362 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,363 947 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,363 | ^ 2023-09-25T16:30:17,364 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-09-25T16:30:17,365 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,365 983 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,366 | ^ 2023-09-25T16:30:17,366 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-09-25T16:30:17,367 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,367 1020 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,368 | ^ 2023-09-25T16:30:17,369 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-09-25T16:30:17,370 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,370 1079 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:30:17,371 | ^ 2023-09-25T16:30:17,385 src/ViennaRNA/subopt.c: In function ‘vrna_subopt_cb’: 2023-09-25T16:30:17,385 src/ViennaRNA/subopt.c:510:29: warning: variable ‘ss’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:17,386 510 | unsigned int *so, *ss; 2023-09-25T16:30:17,387 | ^~ 2023-09-25T16:30:17,387 src/ViennaRNA/subopt.c:510:24: warning: variable ‘so’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:30:17,388 510 | unsigned int *so, *ss; 2023-09-25T16:30:17,388 | ^~ 2023-09-25T16:30:17,422 src/ViennaRNA/subopt.c: In function ‘scan_fms3’: 2023-09-25T16:30:17,424 src/ViennaRNA/subopt.c:2463:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,424 2463 | s3 = ((i < length) && (sn[i] == sn[i + 1])) ? S1[i + 1] : -1; 2023-09-25T16:30:17,425 | ^ 2023-09-25T16:30:17,429 src/ViennaRNA/subopt.c:2545:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,430 2545 | s3 = ((i < length) && (sn[i] == sn[i + 1])) ? S1[i + 1] : -1; 2023-09-25T16:30:17,430 | ^ 2023-09-25T16:30:17,441 src/ViennaRNA/subopt.c: In function ‘repeat’: 2023-09-25T16:30:17,443 src/ViennaRNA/subopt.c:2907:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,443 2907 | if (se[sn[i]] > i) 2023-09-25T16:30:17,444 | ^ 2023-09-25T16:30:17,446 src/ViennaRNA/subopt.c:2910:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:17,447 2910 | if (j - 1 > se[sn[i]]) 2023-09-25T16:30:17,447 | ^ 2023-09-25T16:30:17,449 src/ViennaRNA/subopt.c:2927:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:17,450 2927 | if (i + 1 <= se[sn[nick]]) 2023-09-25T16:30:17,451 | ^~ 2023-09-25T16:30:17,452 src/ViennaRNA/subopt.c:2930:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:17,453 2930 | if (se[sn[nick]] + 1 <= j - 1) 2023-09-25T16:30:17,453 | ^~ 2023-09-25T16:30:27,326 In file included from src/ViennaRNA/subopt.c:44: 2023-09-25T16:30:27,327 In function ‘print_structure’, 2023-09-25T16:30:27,328 inlined from ‘vrna_subopt’ at src/ViennaRNA/subopt.c:441:7: 2023-09-25T16:30:27,328 src/ViennaRNA/color_output.inc:61:7: warning: ‘SeQ’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:30:27,329 61 | fprintf(fp, "%s\n", structure); 2023-09-25T16:30:27,330 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:30:27,330 src/ViennaRNA/subopt.c: In function ‘vrna_subopt’: 2023-09-25T16:30:27,331 src/ViennaRNA/subopt.c:426:14: note: ‘SeQ’ was declared here 2023-09-25T16:30:27,332 426 | char *SeQ, *energies = NULL; 2023-09-25T16:30:27,333 | ^~~ 2023-09-25T16:30:28,138 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/subopt_zuker.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/subopt_zuker.o -fopenmp 2023-09-25T16:30:28,312 src/ViennaRNA/subopt_zuker.c: In function ‘vrna_subopt_zuker’: 2023-09-25T16:30:28,313 src/ViennaRNA/subopt_zuker.c:256:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:28,314 256 | if (hc->up_int[l + 1] < u2) 2023-09-25T16:30:28,314 | ^ 2023-09-25T16:30:28,315 src/ViennaRNA/subopt_zuker.c:268:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:28,316 268 | if (hc->up_int[i + 1] < u1) 2023-09-25T16:30:28,316 | ^ 2023-09-25T16:30:28,318 src/ViennaRNA/subopt_zuker.c:302:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:28,318 302 | if ((hc->up_ml[i + 1] >= u) && 2023-09-25T16:30:28,319 | ^~ 2023-09-25T16:30:28,332 src/ViennaRNA/subopt_zuker.c: In function ‘backtrack’: 2023-09-25T16:30:28,333 src/ViennaRNA/subopt_zuker.c:788:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:28,334 788 | if (hc->up_int[i + 1] < u1) 2023-09-25T16:30:28,334 | ^ 2023-09-25T16:30:28,336 src/ViennaRNA/subopt_zuker.c:800:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:28,336 800 | if (hc->up_int[l + 1] < u2) 2023-09-25T16:30:28,337 | ^ 2023-09-25T16:30:28,339 src/ViennaRNA/subopt_zuker.c:857:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:28,340 857 | if (hc->up_ml[i + 1] < u1) 2023-09-25T16:30:28,340 | ^ 2023-09-25T16:30:28,343 src/ViennaRNA/subopt_zuker.c:898:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:28,343 898 | if ((hc->up_ml[i + 1] >= u1) && 2023-09-25T16:30:28,344 | ^~ 2023-09-25T16:30:30,669 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/treedist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/treedist.o -fopenmp 2023-09-25T16:30:30,814 src/ViennaRNA/treedist.c: In function ‘sprint_aligned_trees’: 2023-09-25T16:30:30,815 src/ViennaRNA/treedist.c:724:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:30:30,816 724 | for (k = 0; k < strlen(ll); k++) { 2023-09-25T16:30:30,816 | ^ 2023-09-25T16:30:30,817 src/ViennaRNA/treedist.c:745:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:30:30,818 745 | for (k = 0; k < strlen(ll); k++) { 2023-09-25T16:30:30,819 | ^ 2023-09-25T16:30:30,819 src/ViennaRNA/treedist.c:771:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:30:30,820 771 | for (k = 0; k < strlen(ll) - strlen(ll1); k++) 2023-09-25T16:30:30,821 | ^ 2023-09-25T16:30:30,823 src/ViennaRNA/treedist.c:775:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:30:30,824 775 | for (k = 0; k < strlen(ll1) - strlen(ll); k++) 2023-09-25T16:30:30,826 | ^ 2023-09-25T16:30:30,827 src/ViennaRNA/treedist.c:778:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:30:30,828 778 | for (k = 0; k < strlen(ll); k++) 2023-09-25T16:30:30,829 | ^ 2023-09-25T16:30:30,829 src/ViennaRNA/treedist.c:780:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:30:30,830 780 | for (k = 0; k < strlen(ll); k++) 2023-09-25T16:30:30,831 | ^ 2023-09-25T16:30:31,841 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/unstructured_domains.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/unstructured_domains.o -fopenmp 2023-09-25T16:30:32,055 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_motifs_centroid’: 2023-09-25T16:30:32,056 src/ViennaRNA/unstructured_domains.c:366:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:32,057 366 | for (m = 0; m < domains_up->motif_count; m++) { 2023-09-25T16:30:32,057 | ^ 2023-09-25T16:30:32,058 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_motifs_MEA’: 2023-09-25T16:30:32,059 src/ViennaRNA/unstructured_domains.c:435:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:32,060 435 | for (i = ptr->i; i <= ptr->j; i++) 2023-09-25T16:30:32,060 | ^~ 2023-09-25T16:30:32,062 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_get_motif_size_at’: 2023-09-25T16:30:32,063 src/ViennaRNA/unstructured_domains.c:679:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:32,064 679 | if ((i > 0) && (i <= vc->length)) { 2023-09-25T16:30:32,064 | ^~ 2023-09-25T16:30:32,065 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_get_motifs_at’: 2023-09-25T16:30:32,066 src/ViennaRNA/unstructured_domains.c:722:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:32,066 722 | if ((i > 0) && (i <= vc->length)) 2023-09-25T16:30:32,067 | ^~ 2023-09-25T16:30:32,068 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_detect_motifs’: 2023-09-25T16:30:32,068 src/ViennaRNA/unstructured_domains.c:748:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:32,069 748 | while (l < vc->length) { 2023-09-25T16:30:32,069 | ^ 2023-09-25T16:30:32,070 src/ViennaRNA/unstructured_domains.c:750:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:32,071 750 | while (l < vc->length) { 2023-09-25T16:30:32,071 | ^ 2023-09-25T16:30:32,072 src/ViennaRNA/unstructured_domains.c:757:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:32,073 757 | if (l < vc->length) { 2023-09-25T16:30:32,073 | ^ 2023-09-25T16:30:32,074 src/ViennaRNA/unstructured_domains.c:761:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:32,075 761 | if (l == vc->length) 2023-09-25T16:30:32,075 | ^~ 2023-09-25T16:30:32,077 src/ViennaRNA/unstructured_domains.c: In function ‘fill_MFE_matrix’: 2023-09-25T16:30:32,077 src/ViennaRNA/unstructured_domains.c:1122:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:32,078 1122 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-09-25T16:30:32,078 | ^ 2023-09-25T16:30:32,079 src/ViennaRNA/unstructured_domains.c:1138:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:32,079 1138 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-09-25T16:30:32,080 | ^ 2023-09-25T16:30:32,080 src/ViennaRNA/unstructured_domains.c:1140:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:32,080 1140 | if (u <= d) { 2023-09-25T16:30:32,081 | ^~ 2023-09-25T16:30:32,081 src/ViennaRNA/unstructured_domains.c:1147:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:30:32,082 1147 | if (u < d) 2023-09-25T16:30:32,083 | ^ 2023-09-25T16:30:32,083 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MFE_matrix’: 2023-09-25T16:30:32,084 src/ViennaRNA/unstructured_domains.c:1185:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:32,084 1185 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-09-25T16:30:32,085 | ^ 2023-09-25T16:30:32,085 src/ViennaRNA/unstructured_domains.c:1201:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:32,086 1201 | for (k = 0; k < domains_up->motif_count; k++) 2023-09-25T16:30:32,087 | ^ 2023-09-25T16:30:32,087 src/ViennaRNA/unstructured_domains.c:1230:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:32,088 1230 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-09-25T16:30:32,088 | ^ 2023-09-25T16:30:32,089 src/ViennaRNA/unstructured_domains.c:1240:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:32,090 1240 | for (k = 0; k < domains_up->motif_count; k++) 2023-09-25T16:30:32,090 | ^ 2023-09-25T16:30:32,091 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MFE_matrix_exhaustive’: 2023-09-25T16:30:32,091 src/ViennaRNA/unstructured_domains.c:1352:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:32,092 1352 | for (k = 0; k < domains_up->uniq_motif_count; k++) { 2023-09-25T16:30:32,092 | ^ 2023-09-25T16:30:32,093 src/ViennaRNA/unstructured_domains.c:1367:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:32,094 1367 | for (m = 0; m < domains_up->uniq_motif_count; m++) 2023-09-25T16:30:32,094 | ^ 2023-09-25T16:30:32,095 src/ViennaRNA/unstructured_domains.c:1394:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:32,096 1394 | for (m = 0; m < domains_up->uniq_motif_count; m++) 2023-09-25T16:30:32,096 | ^ 2023-09-25T16:30:32,097 src/ViennaRNA/unstructured_domains.c: In function ‘fill_MEA_matrix’: 2023-09-25T16:30:32,097 src/ViennaRNA/unstructured_domains.c:1451:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:32,098 1451 | for (m = 0; m < domains_up->motif_count; m++) { 2023-09-25T16:30:32,098 | ^ 2023-09-25T16:30:32,098 src/ViennaRNA/unstructured_domains.c:1466:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:32,099 1466 | for (m = 0; m < domains_up->motif_count; m++) { 2023-09-25T16:30:32,099 | ^ 2023-09-25T16:30:32,100 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MEA_matrix’: 2023-09-25T16:30:32,100 src/ViennaRNA/unstructured_domains.c:1522:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:32,101 1522 | for (m = 0; m < domains_up->motif_count; m++) { 2023-09-25T16:30:32,101 | ^ 2023-09-25T16:30:32,102 src/ViennaRNA/unstructured_domains.c: In function ‘add_ligand_motif’: 2023-09-25T16:30:32,103 src/ViennaRNA/unstructured_domains.c:1600:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:30:32,103 1600 | for (same_size = i = 0; i < ud->uniq_motif_count; i++) { 2023-09-25T16:30:32,104 | ^ 2023-09-25T16:30:34,829 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/utils/cpu.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/cpu.o -fopenmp 2023-09-25T16:30:35,007 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/utils/higher_order_functions.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/higher_order_functions.o -fopenmp 2023-09-25T16:30:35,282 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/utils/higher_order_functions_avx512.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/higher_order_functions_avx512.o -fopenmp -mavx512f 2023-09-25T16:30:35,299 arm-linux-gnueabihf-gcc: error: unrecognized command-line option ‘-mavx512f’ 2023-09-25T16:30:35,302 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-25T16:30:35,420 ERROR: [present-rich] Building wheel for viennarna (pyproject.toml) exited with 1 2023-09-25T16:30:35,434 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmp67lfioj9[/] 2023-09-25T16:30:35,434 [bold magenta]cwd[/]: /tmp/pip-wheel-trpj7r5s/viennarna_dd81a0b1e96443ce8e0e89778f71d861 2023-09-25T16:30:35,435 Building wheel for viennarna (pyproject.toml): finished with status 'error' 2023-09-25T16:30:35,437 ERROR: Failed building wheel for viennarna 2023-09-25T16:30:35,440 Failed to build viennarna 2023-09-25T16:30:35,441 ERROR: Failed to build one or more wheels 2023-09-25T16:30:35,442 Exception information: 2023-09-25T16:30:35,442 Traceback (most recent call last): 2023-09-25T16:30:35,442 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-25T16:30:35,442 status = run_func(*args) 2023-09-25T16:30:35,442 ^^^^^^^^^^^^^^^ 2023-09-25T16:30:35,442 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-25T16:30:35,442 return func(self, options, args) 2023-09-25T16:30:35,442 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-25T16:30:35,442 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-25T16:30:35,442 raise CommandError("Failed to build one or more wheels") 2023-09-25T16:30:35,442 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-25T16:30:35,447 Removed build tracker: '/tmp/pip-build-tracker-o2s6pcgi'