2023-09-25T22:40:55,125 Created temporary directory: /tmp/pip-build-tracker-n51c07mr 2023-09-25T22:40:55,127 Initialized build tracking at /tmp/pip-build-tracker-n51c07mr 2023-09-25T22:40:55,127 Created build tracker: /tmp/pip-build-tracker-n51c07mr 2023-09-25T22:40:55,127 Entered build tracker: /tmp/pip-build-tracker-n51c07mr 2023-09-25T22:40:55,128 Created temporary directory: /tmp/pip-wheel-vzhg8rp_ 2023-09-25T22:40:55,131 Created temporary directory: /tmp/pip-ephem-wheel-cache-rvq5umye 2023-09-25T22:40:55,159 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-25T22:40:55,163 2 location(s) to search for versions of viennarna: 2023-09-25T22:40:55,163 * https://pypi.org/simple/viennarna/ 2023-09-25T22:40:55,163 * https://www.piwheels.org/simple/viennarna/ 2023-09-25T22:40:55,164 Fetching project page and analyzing links: https://pypi.org/simple/viennarna/ 2023-09-25T22:40:55,164 Getting page https://pypi.org/simple/viennarna/ 2023-09-25T22:40:55,166 Found index url https://pypi.org/simple/ 2023-09-25T22:40:55,386 Fetched page https://pypi.org/simple/viennarna/ as application/vnd.pypi.simple.v1+json 2023-09-25T22:40:55,404 Found link https://files.pythonhosted.org/packages/77/72/75bb8baeebb7112f80e8561a3e31edef5d108309900e6cc409d4ced943cf/ViennaRNA-2.5.0a5.tar.gz (from https://pypi.org/simple/viennarna/), version: 2.5.0a5 2023-09-25T22:40:55,405 Found link https://files.pythonhosted.org/packages/82/c0/576a5423bb28d496f75bedad46a8edeafaef439c2573d56d2340c525dc8e/ViennaRNA-2.6.2a0.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2a0 2023-09-25T22:40:55,406 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/56/d7/4be5f10eed2081a3bd54b8ba051159d3d05432eecd58c83b72f535b76e21/ViennaRNA-2.6.2-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,407 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/89/fa/1b4d9474cff058f4e23ce3dffc2c8cc6fa7aa980782f44324fbeeabb55f0/ViennaRNA-2.6.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,408 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/b2/9eeacfc00e825ca78aabc27ead72c32b2056e74d784846e66c80549f8bc3/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,409 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a5/f3/9c602f1c4e7cf2bb95c31bba8b4908f2ddf862204aceb999377b1e76a263/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,410 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b9/50/273d56b829109ec99f52a3250d5975969ea92f8a1d1fe569460a8505a067/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,411 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/4e/c3/d1d4388ce289b97970f762a68cfd7821971b80e2c2a56c3e7c091485c966/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,412 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/fa/c1/b794e68d98c1b7a204e4e5da625e9953f83a3c554d19689d9a1108a1d9fb/ViennaRNA-2.6.2-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,413 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/de/45/e9b08e19992bec9300ffb94cd49f7ea974912cee94de5d4dd0b10697d0d7/ViennaRNA-2.6.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,413 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/38/c8/71736f66a09668eaef822836989f72781dd8ae12f4d0303170445429889c/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,414 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/70/56/bf9b92ad84d1aa0b31265d9a14c58ffcaa236ae460c4365737145bb12489/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,415 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ba/69/db7732e6870f2f25c62edbc619cffc645394a8d54e6f8a928961036d78e1/ViennaRNA-2.6.2-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,416 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/04/c1/f5c82621ad6b749fd552d59de22f520f908277dd976f4d5a33f367d30de8/ViennaRNA-2.6.2-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,417 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f3/3e/5b5dec4d557b9f654c71b89f7aad42a7f9fc4c7c87f1a9fa68e5a51b3163/ViennaRNA-2.6.2-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,418 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c9/b9/89a9e6c7c919b641718d3a60d15cbf4b66862df180079ca0e5a8f418a6f0/ViennaRNA-2.6.2-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,418 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/47/04/470fb66f45780ae342dcd0c39fd3cb01e4fc59ea95066ba04c3d5e5f0f7d/ViennaRNA-2.6.2-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,419 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/76/ce/2ada9ed900e320fa7ed9bac4fb2a505e16b83a9116e21ec66958885b5f90/ViennaRNA-2.6.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,420 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3b/5e/16bbe0cda15be9dd038dbe30b3fb53d8f8edc21c5121f67bc594934b196c/ViennaRNA-2.6.2-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,421 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/66/7f/56eb458650c056b8c1ed6e22185238926e7836b5701d357ef896ce5abb33/ViennaRNA-2.6.2-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,421 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/1c/ef/3297531f48acfdeeb4f10083d0d7d7e5f7af06e7905ac2061344ccac6022/ViennaRNA-2.6.2-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,422 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/36/44/ac509347ec8f9b9c5cb69f4adc993b6f782bab7ed63639a1645450bb5d1c/ViennaRNA-2.6.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,423 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b8/34/89df39d5162afa18e7f487cb110d8aa8ae936d909b42e3be398e1c41b758/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,424 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/bb/0f/c33a98d884ada4b9c7478bed87eb0c66de9da9ecc45babf7604e652d7e36/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,425 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e6/57/7f28f32fa5b43507cd5d4b871fa8d5a43645db2acaf94a028c31b7dd1d8b/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,426 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/a7/fe40da076361a3c71467bcdbba0fc42bab89b4561869c966ffa2539dc942/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,427 Found link https://files.pythonhosted.org/packages/b3/73/44904c687790f2d9e151caf4dc6f1a97eb1beb5da1d089a79784abefa4a2/ViennaRNA-2.6.2.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2 2023-09-25T22:40:55,428 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a3/9e/1e2ae50082ea8589f06adc18fd9d4ba5d5eceeaf11fdb00a507a7633a6c5/ViennaRNA-2.6.3-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,429 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/5f/8f/c4b456b1d535ca3a5f5647e038f5ec9fab5925482fb538fcba51f2bc6a44/ViennaRNA-2.6.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,429 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/24/86/ceb1b342925dedb6a9e5fd4eddf3c66f3c511e42c4a8e34aa20aa04b6ed5/ViennaRNA-2.6.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,430 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/6c/c7/373786745bf38c4a76662c103222151f55d33f7a0862bf557fdb95578526/ViennaRNA-2.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,431 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/08/05/67326020bf4fb1f0b1326933453e8e41a36c3bfdea6b8cf87a07bcb3daf4/ViennaRNA-2.6.3-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,432 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/48/2f/e59a3b66f4ca9abc6e2aa2cd8ec21d1539d133756ebfbe8dfd2f3b591199/ViennaRNA-2.6.3-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,432 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7a/9f/8c2cb862e732bd3c2d8920a912cf8924605c62e97bcbcda002f83d533ff6/ViennaRNA-2.6.3-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,433 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/59/aa/b2280bcc389c924dc72a72c1ae8028fe695c4a245f41b2ab1eb8681d91bd/ViennaRNA-2.6.3-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,434 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/46/b4/70c9716977d6e0019246b03d258802c568d6fa5b3cd0987deeac778dc262/ViennaRNA-2.6.3-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,435 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b9/75/d9bbc8fb67bd585dc719c34ac4439a2bed0a92015c3548f9727b968612d4/ViennaRNA-2.6.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,436 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/6c/0f/0e8ab6395909f664f52e969308655ba73a5e76e0f39892bdae7da5348f1c/ViennaRNA-2.6.3-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,437 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c0/8b/042597cb78def0a5d3b60fd7d38b68b840831409035ce6a42a3910642b2a/ViennaRNA-2.6.3-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,438 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/55/61/7b341f99bd59f00ba5e6646a86409530c24802961ec2394d258eb3faffd5/ViennaRNA-2.6.3-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,438 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c8/0d/8b2999d3263215abd044039a2a7bede2211569f73da3015e2be1566d63db/ViennaRNA-2.6.3-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,439 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c2/34/0dbb99607323989dd0c085a539ce0a256c5f3f0d9acc10dda20a11b7e81e/ViennaRNA-2.6.3-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,440 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/cf/6f/95878bb677b6accc109fc47a6b94e1e590b3fefecce2fd8f241e477f3433/ViennaRNA-2.6.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,441 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3c/8b/9bbe373989b50478d4b0440c6e5262330fa653426c5b305a353e2a58113a/ViennaRNA-2.6.3-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,441 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/46/3a/f24fda11d092c8f67ce31b2ecd790ae788045df5a3ab4497b1fd57d8272e/ViennaRNA-2.6.3-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,442 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7b/85/3291c8de1dc632df62d74f99ffc7d5de990b293d61e14afbd72ca54f0776/ViennaRNA-2.6.3-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,443 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f5/14/8a958e38331b63c35f688645a7c8ca789e016290d25ef26faf9d34ea6d72/ViennaRNA-2.6.3-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,444 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b7/9c/e433da3ed44a34fef8aa9710e6838ef44ddb314455fc4b1a071edb952f23/ViennaRNA-2.6.3-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,445 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e3/90/8324e8a078d271eea60e30163e0097f40b5fffcfc2f22ebc60af685cb4ce/ViennaRNA-2.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,446 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/23/08/678c1fa8bd1c355fecfd9375434cfb452bdf1d9d5eb67147c2a8f2f0b85f/ViennaRNA-2.6.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,446 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/08/71/4cf098294da264cadbd1e35e25f5664b37278ce4640ff983f9a48a4b442f/ViennaRNA-2.6.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T22:40:55,448 Found link https://files.pythonhosted.org/packages/3b/c9/0f29227b21be07188d7eca38fdc1d4a8f5aff444e2301f635b48c5a9212a/ViennaRNA-2.6.3.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.3 2023-09-25T22:40:55,449 Fetching project page and analyzing links: https://www.piwheels.org/simple/viennarna/ 2023-09-25T22:40:55,450 Getting page https://www.piwheels.org/simple/viennarna/ 2023-09-25T22:40:55,452 Found index url https://www.piwheels.org/simple/ 2023-09-25T22:40:55,630 Fetched page https://www.piwheels.org/simple/viennarna/ as text/html 2023-09-25T22:40:55,632 Skipping link: not a file: https://www.piwheels.org/simple/viennarna/ 2023-09-25T22:40:55,632 Skipping link: not a file: https://pypi.org/simple/viennarna/ 2023-09-25T22:40:55,651 Given no hashes to check 1 links for project 'viennarna': discarding no candidates 2023-09-25T22:40:55,668 Collecting viennarna==2.6.3 2023-09-25T22:40:55,671 Created temporary directory: /tmp/pip-unpack-hff8_xmc 2023-09-25T22:40:55,893 Downloading ViennaRNA-2.6.3.tar.gz (4.8 MB) 2023-09-25T22:41:00,616 Added viennarna==2.6.3 from https://files.pythonhosted.org/packages/3b/c9/0f29227b21be07188d7eca38fdc1d4a8f5aff444e2301f635b48c5a9212a/ViennaRNA-2.6.3.tar.gz to build tracker '/tmp/pip-build-tracker-n51c07mr' 2023-09-25T22:41:00,621 Created temporary directory: /tmp/pip-build-env-6t7aq5vi 2023-09-25T22:41:00,626 Installing build dependencies: started 2023-09-25T22:41:00,627 Running command pip subprocess to install build dependencies 2023-09-25T22:41:01,812 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-25T22:41:02,352 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-25T22:41:03,907 Collecting setuptools>=61.0 2023-09-25T22:41:03,908 Obtaining dependency information for setuptools>=61.0 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-25T22:41:03,915 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-25T22:41:04,082 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-25T22:41:06,535 Installing collected packages: setuptools 2023-09-25T22:41:08,731 Successfully installed setuptools-68.2.2 2023-09-25T22:41:09,257 Installing build dependencies: finished with status 'done' 2023-09-25T22:41:09,260 Getting requirements to build wheel: started 2023-09-25T22:41:09,261 Running command Getting requirements to build wheel 2023-09-25T22:41:10,065 running egg_info 2023-09-25T22:41:10,069 writing ViennaRNA.egg-info/PKG-INFO 2023-09-25T22:41:10,073 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2023-09-25T22:41:10,075 writing top-level names to ViennaRNA.egg-info/top_level.txt 2023-09-25T22:41:10,096 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T22:41:10,260 reading manifest template 'MANIFEST.in' 2023-09-25T22:41:11,013 adding license file 'COPYING' 2023-09-25T22:41:11,014 adding license file 'AUTHORS' 2023-09-25T22:41:11,082 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T22:41:11,194 Getting requirements to build wheel: finished with status 'done' 2023-09-25T22:41:11,202 Installing backend dependencies: started 2023-09-25T22:41:11,203 Running command pip subprocess to install backend dependencies 2023-09-25T22:41:12,339 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-25T22:41:12,871 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-25T22:41:13,374 Collecting wheel 2023-09-25T22:41:13,391 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-25T22:41:15,583 Installing collected packages: wheel 2023-09-25T22:41:15,806 Creating /tmp/pip-build-env-6t7aq5vi/normal/local/bin 2023-09-25T22:41:15,808 changing mode of /tmp/pip-build-env-6t7aq5vi/normal/local/bin/wheel to 755 2023-09-25T22:41:15,820 Successfully installed wheel-0.41.2 2023-09-25T22:41:16,315 Installing backend dependencies: finished with status 'done' 2023-09-25T22:41:16,317 Created temporary directory: /tmp/pip-modern-metadata-c8lzsjm0 2023-09-25T22:41:16,319 Preparing metadata (pyproject.toml): started 2023-09-25T22:41:16,321 Running command Preparing metadata (pyproject.toml) 2023-09-25T22:41:17,159 running dist_info 2023-09-25T22:41:17,164 creating /tmp/pip-modern-metadata-c8lzsjm0/ViennaRNA.egg-info 2023-09-25T22:41:17,168 writing /tmp/pip-modern-metadata-c8lzsjm0/ViennaRNA.egg-info/PKG-INFO 2023-09-25T22:41:17,171 writing dependency_links to /tmp/pip-modern-metadata-c8lzsjm0/ViennaRNA.egg-info/dependency_links.txt 2023-09-25T22:41:17,174 writing top-level names to /tmp/pip-modern-metadata-c8lzsjm0/ViennaRNA.egg-info/top_level.txt 2023-09-25T22:41:17,175 writing manifest file '/tmp/pip-modern-metadata-c8lzsjm0/ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T22:41:17,211 reading manifest file '/tmp/pip-modern-metadata-c8lzsjm0/ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T22:41:17,213 reading manifest template 'MANIFEST.in' 2023-09-25T22:41:17,975 adding license file 'COPYING' 2023-09-25T22:41:17,976 adding license file 'AUTHORS' 2023-09-25T22:41:18,038 writing manifest file '/tmp/pip-modern-metadata-c8lzsjm0/ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T22:41:18,041 creating '/tmp/pip-modern-metadata-c8lzsjm0/ViennaRNA-2.6.3.dist-info' 2023-09-25T22:41:18,192 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-25T22:41:18,197 Source in /tmp/pip-wheel-vzhg8rp_/viennarna_65a2628575be4107bf7acf10e0a92536 has version 2.6.3, which satisfies requirement viennarna==2.6.3 from https://files.pythonhosted.org/packages/3b/c9/0f29227b21be07188d7eca38fdc1d4a8f5aff444e2301f635b48c5a9212a/ViennaRNA-2.6.3.tar.gz 2023-09-25T22:41:18,198 Removed viennarna==2.6.3 from https://files.pythonhosted.org/packages/3b/c9/0f29227b21be07188d7eca38fdc1d4a8f5aff444e2301f635b48c5a9212a/ViennaRNA-2.6.3.tar.gz from build tracker '/tmp/pip-build-tracker-n51c07mr' 2023-09-25T22:41:18,205 Created temporary directory: /tmp/pip-unpack-jyfl1__u 2023-09-25T22:41:18,206 Created temporary directory: /tmp/pip-unpack-naupuxlo 2023-09-25T22:41:18,210 Building wheels for collected packages: viennarna 2023-09-25T22:41:18,214 Created temporary directory: /tmp/pip-wheel-5zmjzm_k 2023-09-25T22:41:18,215 Destination directory: /tmp/pip-wheel-5zmjzm_k 2023-09-25T22:41:18,217 Building wheel for viennarna (pyproject.toml): started 2023-09-25T22:41:18,218 Running command Building wheel for viennarna (pyproject.toml) 2023-09-25T22:41:18,988 running bdist_wheel 2023-09-25T22:41:19,004 running build 2023-09-25T22:41:19,004 running build_py 2023-09-25T22:41:19,008 creating build 2023-09-25T22:41:19,009 creating build/lib.linux-armv7l-cpython-311 2023-09-25T22:41:19,010 creating build/lib.linux-armv7l-cpython-311/RNA 2023-09-25T22:41:19,011 copying interfaces/Python/RNA/__init__.py -> build/lib.linux-armv7l-cpython-311/RNA 2023-09-25T22:41:19,014 copying interfaces/Python/RNA/RNA.py -> build/lib.linux-armv7l-cpython-311/RNA 2023-09-25T22:41:19,025 creating build/lib.linux-armv7l-cpython-311/ViennaRNA 2023-09-25T22:41:19,026 copying interfaces/Python/ViennaRNA/__init__.py -> build/lib.linux-armv7l-cpython-311/ViennaRNA 2023-09-25T22:41:19,030 running egg_info 2023-09-25T22:41:19,034 writing ViennaRNA.egg-info/PKG-INFO 2023-09-25T22:41:19,037 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2023-09-25T22:41:19,038 writing top-level names to ViennaRNA.egg-info/top_level.txt 2023-09-25T22:41:19,048 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T22:41:19,079 reading manifest template 'MANIFEST.in' 2023-09-25T22:41:19,848 adding license file 'COPYING' 2023-09-25T22:41:19,848 adding license file 'AUTHORS' 2023-09-25T22:41:19,912 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T22:41:19,965 running build_ext 2023-09-25T22:41:19,970 building 'RNA._RNA' extension 2023-09-25T22:41:19,973 creating build/temp.linux-armv7l-cpython-311 2023-09-25T22:41:19,974 creating build/temp.linux-armv7l-cpython-311/interfaces 2023-09-25T22:41:19,975 creating build/temp.linux-armv7l-cpython-311/interfaces/Python 2023-09-25T22:41:19,975 creating build/temp.linux-armv7l-cpython-311/src 2023-09-25T22:41:19,976 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA 2023-09-25T22:41:19,977 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints 2023-09-25T22:41:19,978 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures 2023-09-25T22:41:19,979 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io 2023-09-25T22:41:19,980 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape 2023-09-25T22:41:19,981 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops 2023-09-25T22:41:19,982 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params 2023-09-25T22:41:19,983 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting 2023-09-25T22:41:19,984 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler 2023-09-25T22:41:19,984 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/naview 2023-09-25T22:41:19,985 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/search 2023-09-25T22:41:19,986 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils 2023-09-25T22:41:19,987 creating build/temp.linux-armv7l-cpython-311/src/cephes 2023-09-25T22:41:19,988 creating build/temp.linux-armv7l-cpython-311/src/json 2023-09-25T22:41:19,988 creating build/temp.linux-armv7l-cpython-311/src/libsvm-3.31 2023-09-25T22:41:19,989 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c interfaces/Python/RNA_wrap.cpp -o build/temp.linux-armv7l-cpython-311/interfaces/Python/RNA_wrap.o -fopenmp 2023-09-25T22:41:34,585 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned char var_array_Sl_unsigned_SS_char_Sg____getitem__(const var_array*, int)’: 2023-09-25T22:41:34,585 interfaces/Python/RNA_wrap.cpp:7207:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:41:34,586 7207 | (i >= max_i)) 2023-09-25T22:41:34,587 | ~~^~~~~~~~ 2023-09-25T22:41:34,588 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned char var_array_Sl_unsigned_SS_char_Sg____setitem__(const var_array*, int, unsigned char)’: 2023-09-25T22:41:34,589 interfaces/Python/RNA_wrap.cpp:7247:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:41:34,589 7247 | (i >= max_i)) 2023-09-25T22:41:34,590 | ~~^~~~~~~~ 2023-09-25T22:41:34,605 interfaces/Python/RNA_wrap.cpp: In function ‘const char var_array_Sl_char_Sg____getitem__(const var_array*, int)’: 2023-09-25T22:41:34,606 interfaces/Python/RNA_wrap.cpp:7326:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:41:34,606 7326 | (i >= max_i)) 2023-09-25T22:41:34,607 | ~~^~~~~~~~ 2023-09-25T22:41:34,608 interfaces/Python/RNA_wrap.cpp: In function ‘const char var_array_Sl_char_Sg____setitem__(const var_array*, int, char)’: 2023-09-25T22:41:34,609 interfaces/Python/RNA_wrap.cpp:7343:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:41:34,610 7343 | (i >= max_i)) 2023-09-25T22:41:34,610 | ~~^~~~~~~~ 2023-09-25T22:41:34,627 interfaces/Python/RNA_wrap.cpp: In function ‘const short int var_array_Sl_short_Sg____getitem__(const var_array*, int)’: 2023-09-25T22:41:34,627 interfaces/Python/RNA_wrap.cpp:7422:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:41:34,628 7422 | (i >= max_i)) 2023-09-25T22:41:34,629 | ~~^~~~~~~~ 2023-09-25T22:41:34,629 interfaces/Python/RNA_wrap.cpp: In function ‘const short int var_array_Sl_short_Sg____setitem__(const var_array*, int, short int)’: 2023-09-25T22:41:34,630 interfaces/Python/RNA_wrap.cpp:7439:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:41:34,631 7439 | (i >= max_i)) 2023-09-25T22:41:34,632 | ~~^~~~~~~~ 2023-09-25T22:41:34,641 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned int var_array_Sl_unsigned_SS_int_Sg____getitem__(const var_array*, int)’: 2023-09-25T22:41:34,642 interfaces/Python/RNA_wrap.cpp:7541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:41:34,642 7541 | (i >= max_i)) 2023-09-25T22:41:34,643 | ~~^~~~~~~~ 2023-09-25T22:41:34,644 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned int var_array_Sl_unsigned_SS_int_Sg____setitem__(const var_array*, int, unsigned int)’: 2023-09-25T22:41:34,644 interfaces/Python/RNA_wrap.cpp:7558:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:41:34,645 7558 | (i >= max_i)) 2023-09-25T22:41:34,646 | ~~^~~~~~~~ 2023-09-25T22:41:34,654 interfaces/Python/RNA_wrap.cpp: In function ‘const int var_array_Sl_int_Sg____getitem__(const var_array*, int)’: 2023-09-25T22:41:34,655 interfaces/Python/RNA_wrap.cpp:7637:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:41:34,656 7637 | (i >= max_i)) 2023-09-25T22:41:34,657 | ~~^~~~~~~~ 2023-09-25T22:41:34,657 interfaces/Python/RNA_wrap.cpp: In function ‘const int var_array_Sl_int_Sg____setitem__(const var_array*, int, int)’: 2023-09-25T22:41:34,658 interfaces/Python/RNA_wrap.cpp:7654:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:41:34,659 7654 | (i >= max_i)) 2023-09-25T22:41:34,659 | ~~^~~~~~~~ 2023-09-25T22:41:34,668 interfaces/Python/RNA_wrap.cpp: In function ‘const FLT_OR_DBL var_array_Sl_FLT_OR_DBL_Sg____getitem__(const var_array*, int)’: 2023-09-25T22:41:34,669 interfaces/Python/RNA_wrap.cpp:7733:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:41:34,669 7733 | (i >= max_i)) 2023-09-25T22:41:34,670 | ~~^~~~~~~~ 2023-09-25T22:41:34,671 interfaces/Python/RNA_wrap.cpp: In function ‘const FLT_OR_DBL var_array_Sl_FLT_OR_DBL_Sg____setitem__(const var_array*, int, FLT_OR_DBL)’: 2023-09-25T22:41:34,671 interfaces/Python/RNA_wrap.cpp:7750:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:41:34,672 7750 | (i >= max_i)) 2023-09-25T22:41:34,673 | ~~^~~~~~~~ 2023-09-25T22:41:34,753 interfaces/Python/RNA_wrap.cpp: In function ‘var_array* my_ptable(std::string, unsigned int)’: 2023-09-25T22:41:34,753 interfaces/Python/RNA_wrap.cpp:8198:21: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T22:41:34,754 8198 | int i; 2023-09-25T22:41:34,755 | ^ 2023-09-25T22:41:34,755 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_pt_pk_remove(std::vector >, unsigned int)’: 2023-09-25T22:41:34,756 interfaces/Python/RNA_wrap.cpp:8252:15: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:41:34,756 8252 | if (pt[0] != pt.size() - 1) 2023-09-25T22:41:34,768 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_loopidx_from_ptable(std::vector >)’: 2023-09-25T22:41:34,769 interfaces/Python/RNA_wrap.cpp:8404:25: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T22:41:34,770 8404 | int i, *idx; 2023-09-25T22:41:34,770 | ^ 2023-09-25T22:41:34,828 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, float*)’: 2023-09-25T22:41:34,829 interfaces/Python/RNA_wrap.cpp:9417:11: warning: unused variable ‘s’ [-Wunused-variable] 2023-09-25T22:41:34,829 9417 | char *s, **tok, **ptr, *struc, *sequence; 2023-09-25T22:41:34,830 | ^ 2023-09-25T22:41:34,831 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, char*, float*)’: 2023-09-25T22:41:34,832 interfaces/Python/RNA_wrap.cpp:9468:11: warning: unused variable ‘s’ [-Wunused-variable] 2023-09-25T22:41:34,832 9468 | char *s, **tok, **ptr, *struc, *sequence; 2023-09-25T22:41:34,833 | ^ 2023-09-25T22:41:34,842 interfaces/Python/RNA_wrap.cpp: In function ‘double my_pf_add(double, double, double)’: 2023-09-25T22:41:34,843 interfaces/Python/RNA_wrap.cpp:9721:12: warning: unused variable ‘result’ [-Wunused-variable] 2023-09-25T22:41:34,844 9721 | double result = 0; 2023-09-25T22:41:34,844 | ^~~~~~ 2023-09-25T22:41:34,909 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_command_s* my_file_commands_read(std::string, unsigned int)’: 2023-09-25T22:41:34,909 interfaces/Python/RNA_wrap.cpp:10496:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T22:41:34,910 10496 | int i; 2023-09-25T22:41:34,911 | ^ 2023-09-25T22:41:35,024 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_sc_f_callback(int, int, int, int, unsigned char, void*)’: 2023-09-25T22:41:35,025 interfaces/Python/RNA_wrap.cpp:11855:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T22:41:35,025 11855 | PyObject *func, *arglist, *result, *err; 2023-09-25T22:41:35,026 | ^~~~~~~ 2023-09-25T22:41:35,031 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_basepair_t* py_wrap_sc_bt_callback(int, int, int, int, unsigned char, void*)’: 2023-09-25T22:41:35,032 interfaces/Python/RNA_wrap.cpp:11927:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T22:41:35,032 11927 | PyObject *func, *arglist, *result, *bp, *err; 2023-09-25T22:41:35,033 | ^~~~~~~ 2023-09-25T22:41:35,036 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_sc_exp_f_callback(int, int, int, int, unsigned char, void*)’: 2023-09-25T22:41:35,036 interfaces/Python/RNA_wrap.cpp:12046:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T22:41:35,037 12046 | PyObject *func, *arglist, *result, *err; 2023-09-25T22:41:35,038 | ^~~~~~~ 2023-09-25T22:41:35,050 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_ud_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2023-09-25T22:41:35,051 interfaces/Python/RNA_wrap.cpp:12486:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T22:41:35,051 12486 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2023-09-25T22:41:35,052 | ^~~~~~~ 2023-09-25T22:41:35,054 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_exp_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2023-09-25T22:41:35,054 interfaces/Python/RNA_wrap.cpp:12546:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T22:41:35,055 12546 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2023-09-25T22:41:35,055 | ^~~~~~~ 2023-09-25T22:41:35,057 interfaces/Python/RNA_wrap.cpp: In function ‘void py_wrap_ud_prob_add(vrna_fold_compound_t*, int, int, unsigned int, FLT_OR_DBL, void*)’: 2023-09-25T22:41:35,058 interfaces/Python/RNA_wrap.cpp:12606:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T22:41:35,059 12606 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_prob; 2023-09-25T22:41:35,059 | ^~~~~~~ 2023-09-25T22:41:35,062 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_prob_get(vrna_fold_compound_t*, int, int, unsigned int, int, void*)’: 2023-09-25T22:41:35,062 interfaces/Python/RNA_wrap.cpp:12665:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T22:41:35,063 12665 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_motif; 2023-09-25T22:41:35,064 | ^~~~~~~ 2023-09-25T22:41:35,066 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_subopt_cb(const char*, float, void*)’: 2023-09-25T22:41:35,067 interfaces/Python/RNA_wrap.cpp:12767:37: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T22:41:35,068 12767 | PyObject *func, *arglist, *result, *err, *py_structure, *py_energy; 2023-09-25T22:41:35,069 | ^~~~~~~ 2023-09-25T22:41:35,071 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_bs_cb(const char*, void*)’: 2023-09-25T22:41:35,071 interfaces/Python/RNA_wrap.cpp:12853:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T22:41:35,072 12853 | PyObject *func, *arglist, *result, *err; 2023-09-25T22:41:35,073 | ^~~~~~~ 2023-09-25T22:41:35,074 interfaces/Python/RNA_wrap.cpp:12858:28: warning: unused variable ‘py_energy’ [-Wunused-variable] 2023-09-25T22:41:35,074 12858 | PyObject *py_structure, *py_energy; 2023-09-25T22:41:35,075 | ^~~~~~~~~ 2023-09-25T22:41:35,076 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_cb(int, int, const char*, float, void*)’: 2023-09-25T22:41:35,077 interfaces/Python/RNA_wrap.cpp:12952:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T22:41:35,077 12952 | PyObject *func, *arglist, *result, *err; 2023-09-25T22:41:35,078 | ^~~~~~~ 2023-09-25T22:41:35,080 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_zscore_cb(int, int, const char*, float, float, void*)’: 2023-09-25T22:41:35,080 interfaces/Python/RNA_wrap.cpp:13006:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T22:41:35,081 13006 | PyObject *func, *arglist, *result, *err; 2023-09-25T22:41:35,082 | ^~~~~~~ 2023-09-25T22:41:35,087 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_pf_window_cb(FLT_OR_DBL*, int, int, int, unsigned int, void*)’: 2023-09-25T22:41:35,088 interfaces/Python/RNA_wrap.cpp:13158:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T22:41:35,089 13158 | PyObject *func, *arglist, *result, *pr_list, *err; 2023-09-25T22:41:35,089 | ^~~~~~~ 2023-09-25T22:41:35,092 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_heat_capacity_cb(float, float, void*)’: 2023-09-25T22:41:35,092 interfaces/Python/RNA_wrap.cpp:13317:43: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T22:41:35,093 13317 | PyObject *func, *arglist, *result, *err, *py_temp, *py_hc; 2023-09-25T22:41:35,094 | ^~~~~~~ 2023-09-25T22:41:35,096 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_move_update_cb(vrna_fold_compound_t*, vrna_move_t, unsigned int, void*)’: 2023-09-25T22:41:35,096 interfaces/Python/RNA_wrap.cpp:13411:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T22:41:35,097 13411 | PyObject *func, *arglist, *result, *err, *py_fc, *py_neighbor, *py_state; 2023-09-25T22:41:35,098 | ^~~~~~~ 2023-09-25T22:41:35,127 interfaces/Python/RNA_wrap.cpp: In function ‘double vrna_fold_compound_t_exp_E_ext_stem(vrna_fold_compound_t*, int, int)’: 2023-09-25T22:41:35,128 interfaces/Python/RNA_wrap.cpp:13771:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:41:35,128 13771 | if (j < self->length) 2023-09-25T22:41:35,129 | ~~^~~~~~~~~~~~~~ 2023-09-25T22:41:35,164 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2023-09-25T22:41:35,165 interfaces/Python/RNA_wrap.cpp:14204:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T22:41:35,165 14204 | int i; 2023-09-25T22:41:35,166 | ^ 2023-09-25T22:41:35,169 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_gradient__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int)’: 2023-09-25T22:41:35,170 interfaces/Python/RNA_wrap.cpp:14248:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T22:41:35,170 14248 | int i; 2023-09-25T22:41:35,171 | ^ 2023-09-25T22:41:35,174 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_random__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2023-09-25T22:41:35,174 interfaces/Python/RNA_wrap.cpp:14292:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T22:41:35,175 14292 | int i; 2023-09-25T22:41:35,176 | ^ 2023-09-25T22:41:37,646 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_temperature_set(PyObject*)’: 2023-09-25T22:41:37,647 interfaces/Python/RNA_wrap.cpp:52896:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,647 52896 | fail: 2023-09-25T22:41:37,648 | ^~~~ 2023-09-25T22:41:37,649 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_dangles_set(PyObject*)’: 2023-09-25T22:41:37,649 interfaces/Python/RNA_wrap.cpp:52916:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,650 52916 | fail: 2023-09-25T22:41:37,651 | ^~~~ 2023-09-25T22:41:37,651 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_betaScale_set(PyObject*)’: 2023-09-25T22:41:37,652 interfaces/Python/RNA_wrap.cpp:52936:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,653 52936 | fail: 2023-09-25T22:41:37,654 | ^~~~ 2023-09-25T22:41:37,654 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_pf_smooth_set(PyObject*)’: 2023-09-25T22:41:37,655 interfaces/Python/RNA_wrap.cpp:52956:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,656 52956 | fail: 2023-09-25T22:41:37,657 | ^~~~ 2023-09-25T22:41:37,657 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_tetra_loop_set(PyObject*)’: 2023-09-25T22:41:37,658 interfaces/Python/RNA_wrap.cpp:52976:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,658 52976 | fail: 2023-09-25T22:41:37,659 | ^~~~ 2023-09-25T22:41:37,659 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_special_hp_set(PyObject*)’: 2023-09-25T22:41:37,660 interfaces/Python/RNA_wrap.cpp:52996:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,660 52996 | fail: 2023-09-25T22:41:37,661 | ^~~~ 2023-09-25T22:41:37,661 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLonelyPairs_set(PyObject*)’: 2023-09-25T22:41:37,662 interfaces/Python/RNA_wrap.cpp:53016:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,662 53016 | fail: 2023-09-25T22:41:37,663 | ^~~~ 2023-09-25T22:41:37,663 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLP_set(PyObject*)’: 2023-09-25T22:41:37,664 interfaces/Python/RNA_wrap.cpp:53036:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,665 53036 | fail: 2023-09-25T22:41:37,665 | ^~~~ 2023-09-25T22:41:37,666 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGU_set(PyObject*)’: 2023-09-25T22:41:37,666 interfaces/Python/RNA_wrap.cpp:53056:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,667 53056 | fail: 2023-09-25T22:41:37,668 | ^~~~ 2023-09-25T22:41:37,668 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_no_closingGU_set(PyObject*)’: 2023-09-25T22:41:37,669 interfaces/Python/RNA_wrap.cpp:53076:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,670 53076 | fail: 2023-09-25T22:41:37,671 | ^~~~ 2023-09-25T22:41:37,672 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGUclosure_set(PyObject*)’: 2023-09-25T22:41:37,672 interfaces/Python/RNA_wrap.cpp:53096:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,673 53096 | fail: 2023-09-25T22:41:37,674 | ^~~~ 2023-09-25T22:41:37,674 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_logML_set(PyObject*)’: 2023-09-25T22:41:37,675 interfaces/Python/RNA_wrap.cpp:53116:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,676 53116 | fail: 2023-09-25T22:41:37,676 | ^~~~ 2023-09-25T22:41:37,677 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_circ_set(PyObject*)’: 2023-09-25T22:41:37,677 interfaces/Python/RNA_wrap.cpp:53136:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,678 53136 | fail: 2023-09-25T22:41:37,679 | ^~~~ 2023-09-25T22:41:37,679 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_gquad_set(PyObject*)’: 2023-09-25T22:41:37,680 interfaces/Python/RNA_wrap.cpp:53156:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,680 53156 | fail: 2023-09-25T22:41:37,681 | ^~~~ 2023-09-25T22:41:37,682 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_uniq_ML_set(PyObject*)’: 2023-09-25T22:41:37,683 interfaces/Python/RNA_wrap.cpp:53176:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,683 53176 | fail: 2023-09-25T22:41:37,684 | ^~~~ 2023-09-25T22:41:37,685 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_energy_set_set(PyObject*)’: 2023-09-25T22:41:37,686 interfaces/Python/RNA_wrap.cpp:53196:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,686 53196 | fail: 2023-09-25T22:41:37,687 | ^~~~ 2023-09-25T22:41:37,688 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_backtrack_set(PyObject*)’: 2023-09-25T22:41:37,689 interfaces/Python/RNA_wrap.cpp:53216:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,689 53216 | fail: 2023-09-25T22:41:37,690 | ^~~~ 2023-09-25T22:41:37,691 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_do_backtrack_set(PyObject*)’: 2023-09-25T22:41:37,691 interfaces/Python/RNA_wrap.cpp:53259:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,692 53259 | fail: 2023-09-25T22:41:37,692 | ^~~~ 2023-09-25T22:41:37,693 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_compute_bpp_set(PyObject*)’: 2023-09-25T22:41:37,693 interfaces/Python/RNA_wrap.cpp:53279:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,694 53279 | fail: 2023-09-25T22:41:37,694 | ^~~~ 2023-09-25T22:41:37,695 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_max_bp_span_set(PyObject*)’: 2023-09-25T22:41:37,695 interfaces/Python/RNA_wrap.cpp:53299:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,696 53299 | fail: 2023-09-25T22:41:37,697 | ^~~~ 2023-09-25T22:41:37,697 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_min_loop_size_set(PyObject*)’: 2023-09-25T22:41:37,698 interfaces/Python/RNA_wrap.cpp:53319:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,698 53319 | fail: 2023-09-25T22:41:37,699 | ^~~~ 2023-09-25T22:41:37,699 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_window_size_set(PyObject*)’: 2023-09-25T22:41:37,700 interfaces/Python/RNA_wrap.cpp:53339:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,701 53339 | fail: 2023-09-25T22:41:37,702 | ^~~~ 2023-09-25T22:41:37,702 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_ribo_set(PyObject*)’: 2023-09-25T22:41:37,703 interfaces/Python/RNA_wrap.cpp:53382:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,704 53382 | fail: 2023-09-25T22:41:37,704 | ^~~~ 2023-09-25T22:41:37,705 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_cv_fact_set(PyObject*)’: 2023-09-25T22:41:37,706 interfaces/Python/RNA_wrap.cpp:53402:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,707 53402 | fail: 2023-09-25T22:41:37,707 | ^~~~ 2023-09-25T22:41:37,708 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_nc_fact_set(PyObject*)’: 2023-09-25T22:41:37,709 interfaces/Python/RNA_wrap.cpp:53422:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,709 53422 | fail: 2023-09-25T22:41:37,710 | ^~~~ 2023-09-25T22:41:37,711 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_sfact_set(PyObject*)’: 2023-09-25T22:41:37,712 interfaces/Python/RNA_wrap.cpp:53442:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,712 53442 | fail: 2023-09-25T22:41:37,713 | ^~~~ 2023-09-25T22:41:37,713 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_salt_set(PyObject*)’: 2023-09-25T22:41:37,714 interfaces/Python/RNA_wrap.cpp:53462:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,715 53462 | fail: 2023-09-25T22:41:37,715 | ^~~~ 2023-09-25T22:41:37,716 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInit_set(PyObject*)’: 2023-09-25T22:41:37,717 interfaces/Python/RNA_wrap.cpp:53482:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,718 53482 | fail: 2023-09-25T22:41:37,718 | ^~~~ 2023-09-25T22:41:37,719 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInitFact_set(PyObject*)’: 2023-09-25T22:41:37,720 interfaces/Python/RNA_wrap.cpp:53502:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T22:41:37,720 53502 | fail: 2023-09-25T22:41:37,721 | ^~~~ 2023-09-25T22:41:39,608 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T22:41:39,608 interfaces/Python/RNA_wrap.cpp:83907:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T22:41:39,609 83907 | PyObject *o, *o2, *o3; 2023-09-25T22:41:39,609 | ^~ 2023-09-25T22:41:39,613 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T22:41:39,614 interfaces/Python/RNA_wrap.cpp:83989:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T22:41:39,614 83989 | PyObject *o, *o2, *o3; 2023-09-25T22:41:39,615 | ^~ 2023-09-25T22:41:39,619 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T22:41:39,620 interfaces/Python/RNA_wrap.cpp:84079:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T22:41:39,620 84079 | PyObject *o, *o2, *o3; 2023-09-25T22:41:39,621 | ^~ 2023-09-25T22:41:39,754 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T22:41:39,755 interfaces/Python/RNA_wrap.cpp:86339:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T22:41:39,755 86339 | PyObject *o, *o2, *o3; 2023-09-25T22:41:39,756 | ^~ 2023-09-25T22:41:39,766 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T22:41:39,767 interfaces/Python/RNA_wrap.cpp:86584:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T22:41:39,768 86584 | PyObject *o, *o2, *o3; 2023-09-25T22:41:39,769 | ^~ 2023-09-25T22:41:39,779 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T22:41:39,780 interfaces/Python/RNA_wrap.cpp:86867:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T22:41:39,781 86867 | PyObject *o, *o2, *o3; 2023-09-25T22:41:39,782 | ^~ 2023-09-25T22:42:18,084 In file included from /usr/include/c++/12/vector:70, 2023-09-25T22:42:18,084 from interfaces/Python/RNA_wrap.cpp:4006: 2023-09-25T22:42:18,085 /usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T22:42:18,086 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:42:18,086 739 | vector<_Tp, _Alloc>:: 2023-09-25T22:42:18,087 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T22:42:18,088 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:42:18,088 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:42:19,317 /usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’: 2023-09-25T22:42:19,318 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:42:19,319 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:42:19,319 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:42:48,984 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T22:42:48,985 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval5’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:42:48,985 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T22:42:48,986 | ^ 2023-09-25T22:42:48,992 interfaces/Python/RNA_wrap.cpp:86287:26: note: ‘retval5’ was declared here 2023-09-25T22:42:48,993 86287 | vrna_pbacktrack_mem_t *retval5 ; 2023-09-25T22:42:48,993 | ^~~~~~~ 2023-09-25T22:42:49,096 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T22:42:49,096 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval6’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:42:49,097 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T22:42:49,097 | ^ 2023-09-25T22:42:49,104 interfaces/Python/RNA_wrap.cpp:86527:26: note: ‘retval6’ was declared here 2023-09-25T22:42:49,105 86527 | vrna_pbacktrack_mem_t *retval6 ; 2023-09-25T22:42:49,106 | ^~~~~~~ 2023-09-25T22:42:49,221 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T22:42:49,221 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval7’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:42:49,222 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T22:42:49,223 | ^ 2023-09-25T22:42:49,230 interfaces/Python/RNA_wrap.cpp:86805:26: note: ‘retval7’ was declared here 2023-09-25T22:42:49,230 86805 | vrna_pbacktrack_mem_t *retval7 ; 2023-09-25T22:42:49,231 | ^~~~~~~ 2023-09-25T22:43:26,657 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-25T22:43:26,658 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:43:26,658 439 | vector<_Tp, _Alloc>:: 2023-09-25T22:43:26,659 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:26,700 In file included from /usr/include/c++/12/vector:64: 2023-09-25T22:43:26,700 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:43:26,701 inlined from ‘void std_vector_Sl_double_Sg__append(std::vector >*, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:5803:22, 2023-09-25T22:43:26,702 inlined from ‘PyObject* _wrap_DoubleVector_append(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:22395:38: 2023-09-25T22:43:26,703 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:26,703 1287 | _M_realloc_insert(end(), __x); 2023-09-25T22:43:26,704 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T22:43:26,780 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:43:26,780 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4656:30: 2023-09-25T22:43:26,781 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:26,782 1287 | _M_realloc_insert(end(), __x); 2023-09-25T22:43:26,782 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T22:43:26,783 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:43:26,783 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4671:28: 2023-09-25T22:43:26,784 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:26,784 1287 | _M_realloc_insert(end(), __x); 2023-09-25T22:43:26,785 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T22:43:26,854 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:43:26,855 inlined from ‘PyObject* _wrap_DoubleVector_push_back(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23096:24: 2023-09-25T22:43:26,855 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:26,856 1287 | _M_realloc_insert(end(), __x); 2023-09-25T22:43:26,857 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T22:43:26,893 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]’: 2023-09-25T22:43:26,893 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:43:26,894 175 | vector<_Tp, _Alloc>:: 2023-09-25T22:43:26,895 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:26,907 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = double; _Alloc = std::allocator]’: 2023-09-25T22:43:26,908 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:43:26,909 189 | vector<_Tp, _Alloc>:: 2023-09-25T22:43:26,909 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:26,910 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:43:26,949 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:43:26,950 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4755:20: 2023-09-25T22:43:26,950 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:26,951 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T22:43:26,951 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:26,952 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:43:26,952 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4760:27: 2023-09-25T22:43:26,953 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:26,953 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T22:43:26,954 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:26,954 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:43:26,955 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4772:33: 2023-09-25T22:43:26,956 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:26,956 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T22:43:26,957 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:27,058 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:43:27,059 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-09-25T22:43:27,059 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4696:23: 2023-09-25T22:43:27,060 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:43:27,061 1779 | _M_range_insert(__pos, __first, __last, 2023-09-25T22:43:27,062 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:27,063 1780 | std::__iterator_category(__first)); 2023-09-25T22:43:27,063 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:27,064 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:27,064 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:43:27,065 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4703:22: 2023-09-25T22:43:27,065 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:27,066 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T22:43:27,066 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:27,067 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:43:27,067 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-09-25T22:43:27,068 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4706:23: 2023-09-25T22:43:27,068 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:43:27,069 1779 | _M_range_insert(__pos, __first, __last, 2023-09-25T22:43:27,070 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:27,071 1780 | std::__iterator_category(__first)); 2023-09-25T22:43:27,071 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:27,072 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:27,161 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:43:27,162 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4755:20, 2023-09-25T22:43:27,163 inlined from ‘void std_vector_Sl_double_Sg____delslice__(std::vector >*, std::vector >::difference_type, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:5740:21, 2023-09-25T22:43:27,164 inlined from ‘PyObject* _wrap_DoubleVector___delslice__(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:21857:46: 2023-09-25T22:43:27,165 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:27,165 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T22:43:27,166 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:27,213 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(iterator, _Arg&&) [with _Arg = double; _Tp = double; _Alloc = std::allocator]’: 2023-09-25T22:43:27,213 /usr/include/c++/12/bits/vector.tcc:407:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:43:27,214 407 | vector<_Tp, _Alloc>:: 2023-09-25T22:43:27,214 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:27,272 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2023-09-25T22:43:27,272 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:43:27,273 523 | vector<_Tp, _Alloc>:: 2023-09-25T22:43:27,274 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:35,940 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const vrna_path_s&}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T22:43:35,941 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:43:35,942 439 | vector<_Tp, _Alloc>:: 2023-09-25T22:43:35,942 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:35,984 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:43:35,984 inlined from ‘std::vector > my_get_path(std::string, std::string, std::string, int)’ at interfaces/Python/RNA_wrap.cpp:10945:20: 2023-09-25T22:43:35,985 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:35,986 1287 | _M_realloc_insert(end(), __x); 2023-09-25T22:43:35,987 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T22:43:36,053 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:43:36,054 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4656:30: 2023-09-25T22:43:36,055 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:36,055 1287 | _M_realloc_insert(end(), __x); 2023-09-25T22:43:36,056 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T22:43:36,057 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:43:36,058 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4671:28: 2023-09-25T22:43:36,058 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:36,059 1287 | _M_realloc_insert(end(), __x); 2023-09-25T22:43:36,059 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T22:43:36,134 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:43:36,135 inlined from ‘void std_vector_Sl_vrna_path_t_Sg__append(std::vector >*, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6909:22, 2023-09-25T22:43:36,135 inlined from ‘PyObject* _wrap_PathVector_append(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:41543:43: 2023-09-25T22:43:36,136 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:36,136 1287 | _M_realloc_insert(end(), __x); 2023-09-25T22:43:36,137 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T22:43:36,185 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:43:36,186 inlined from ‘PyObject* _wrap_PathVector_push_back(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42244:24: 2023-09-25T22:43:36,186 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:36,187 1287 | _M_realloc_insert(end(), __x); 2023-09-25T22:43:36,187 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T22:43:36,230 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T22:43:36,230 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:43:36,231 175 | vector<_Tp, _Alloc>:: 2023-09-25T22:43:36,232 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:36,244 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T22:43:36,244 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:43:36,245 189 | vector<_Tp, _Alloc>:: 2023-09-25T22:43:36,246 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:36,246 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:43:36,286 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:43:36,286 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4755:20: 2023-09-25T22:43:36,287 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:36,288 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T22:43:36,288 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:36,289 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:43:36,289 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4760:27: 2023-09-25T22:43:36,290 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:36,290 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T22:43:36,291 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:36,291 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:43:36,292 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4772:33: 2023-09-25T22:43:36,292 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:36,293 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T22:43:36,294 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:36,394 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:43:36,394 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-09-25T22:43:36,395 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4696:23: 2023-09-25T22:43:36,396 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:43:36,396 1779 | _M_range_insert(__pos, __first, __last, 2023-09-25T22:43:36,397 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:36,398 1780 | std::__iterator_category(__first)); 2023-09-25T22:43:36,398 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:36,399 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:36,400 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:43:36,401 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4703:22: 2023-09-25T22:43:36,401 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:36,402 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T22:43:36,402 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:36,403 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:43:36,403 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-09-25T22:43:36,404 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4706:23: 2023-09-25T22:43:36,404 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:43:36,405 1779 | _M_range_insert(__pos, __first, __last, 2023-09-25T22:43:36,406 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:36,406 1780 | std::__iterator_category(__first)); 2023-09-25T22:43:36,407 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:36,408 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:36,502 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:43:36,503 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4755:20, 2023-09-25T22:43:36,504 inlined from ‘void std_vector_Sl_vrna_path_t_Sg____delslice__(std::vector >*, std::vector >::difference_type, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:6846:21, 2023-09-25T22:43:36,504 inlined from ‘PyObject* _wrap_PathVector___delslice__(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:41005:51: 2023-09-25T22:43:36,505 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:36,506 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T22:43:36,507 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:36,554 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(iterator, _Arg&&) [with _Arg = vrna_path_s; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T22:43:36,554 /usr/include/c++/12/bits/vector.tcc:407:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:43:36,555 407 | vector<_Tp, _Alloc>:: 2023-09-25T22:43:36,555 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:36,618 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T22:43:36,619 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:43:36,620 523 | vector<_Tp, _Alloc>:: 2023-09-25T22:43:36,620 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:44,692 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-25T22:43:44,692 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:43:44,693 439 | vector<_Tp, _Alloc>:: 2023-09-25T22:43:44,694 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:44,742 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:43:44,742 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-25T22:43:44,743 inlined from ‘std::vector > my_aln_conservation_struct(std::vector, std::allocator > >, std::string, vrna_md_t*)’ at interfaces/Python/RNA_wrap.cpp:8670:31: 2023-09-25T22:43:44,744 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:44,745 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-25T22:43:44,745 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:44,785 In file included from /usr/include/c++/12/algorithm:61, 2023-09-25T22:43:44,785 from interfaces/Python/RNA_wrap.cpp:4003: 2023-09-25T22:43:44,786 /usr/include/c++/12/bits/stl_algo.h: In function ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = back_insert_iterator > >; _UnaryOperation = double (*)(const double&)]’: 2023-09-25T22:43:44,787 /usr/include/c++/12/bits/stl_algo.h:4252:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:44,787 4252 | transform(_InputIterator __first, _InputIterator __last, 2023-09-25T22:43:44,788 | ^~~~~~~~~ 2023-09-25T22:43:44,789 /usr/include/c++/12/bits/stl_algo.h:4252:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:44,790 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:43:44,791 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-25T22:43:44,791 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(typename _Container::value_type&&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:743:22, 2023-09-25T22:43:44,792 inlined from ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = back_insert_iterator > >; _UnaryOperation = double (*)(const double&)]’ at /usr/include/c++/12/bits/stl_algo.h:4263:12: 2023-09-25T22:43:44,792 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:44,793 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-25T22:43:44,793 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:44,858 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:43:44,858 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-25T22:43:44,859 inlined from ‘std::vector >, std::allocator > > > pfl_fold_up(std::string, int, int, int)’ at interfaces/Python/RNA_wrap.cpp:9952:20: 2023-09-25T22:43:44,860 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:44,860 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-25T22:43:44,861 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:44,862 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:43:44,863 inlined from ‘std::vector >, std::allocator > > > pfl_fold_up(std::string, int, int, int)’ at interfaces/Python/RNA_wrap.cpp:9956:22: 2023-09-25T22:43:44,863 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:44,864 1287 | _M_realloc_insert(end(), __x); 2023-09-25T22:43:44,865 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T22:43:45,204 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:43:45,204 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-25T22:43:45,205 inlined from ‘std::vector > my_aln_conservation_col(std::vector, std::allocator > >, vrna_md_t*, unsigned int)’ at interfaces/Python/RNA_wrap.cpp:8693:31: 2023-09-25T22:43:45,206 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:45,206 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-25T22:43:45,207 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:45,578 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:43:45,579 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-25T22:43:45,580 inlined from ‘std::vector >, std::allocator > > > vrna_fold_compound_t_bpp(vrna_fold_compound_t*)’ at interfaces/Python/RNA_wrap.cpp:13904:37, 2023-09-25T22:43:45,580 inlined from ‘PyObject* _wrap_fold_compound_bpp(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:83412:40: 2023-09-25T22:43:45,581 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:45,581 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-25T22:43:45,582 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:43:45,950 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T22:43:45,950 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval3’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:43:45,951 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T22:43:45,952 | ^ 2023-09-25T22:43:45,958 interfaces/Python/RNA_wrap.cpp:83865:26: note: ‘retval3’ was declared here 2023-09-25T22:43:45,958 83865 | vrna_pbacktrack_mem_t *retval3 ; 2023-09-25T22:43:45,959 | ^~~~~~~ 2023-09-25T22:43:46,579 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T22:43:46,579 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval4’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:43:46,580 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T22:43:46,581 | ^ 2023-09-25T22:43:46,587 interfaces/Python/RNA_wrap.cpp:83942:26: note: ‘retval4’ was declared here 2023-09-25T22:43:46,587 83942 | vrna_pbacktrack_mem_t *retval4 ; 2023-09-25T22:43:46,588 | ^~~~~~~ 2023-09-25T22:43:47,277 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T22:43:47,799 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval5’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:43:47,861 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T22:43:47,889 | ^ 2023-09-25T22:43:47,890 interfaces/Python/RNA_wrap.cpp:84027:26: note: ‘retval5’ was declared here 2023-09-25T22:43:47,890 84027 | vrna_pbacktrack_mem_t *retval5 ; 2023-09-25T22:43:47,891 | ^~~~~~~ 2023-09-25T22:43:49,350 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:43:49,351 inlined from ‘std::vector > vrna_fold_compound_t_path_direct(vrna_fold_compound_t*, std::string, std::string, int, vrna_path_options_s*)’ at interfaces/Python/RNA_wrap.cpp:14355:24, 2023-09-25T22:43:49,352 inlined from ‘PyObject* _wrap_fold_compound_path_direct(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:85517:48: 2023-09-25T22:43:49,352 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:49,353 1287 | _M_realloc_insert(end(), __x); 2023-09-25T22:43:49,353 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T22:43:49,354 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:43:49,355 inlined from ‘std::vector > vrna_fold_compound_t_path_direct(vrna_fold_compound_t*, std::string, std::string, int, vrna_path_options_s*)’ at interfaces/Python/RNA_wrap.cpp:14364:24, 2023-09-25T22:43:49,355 inlined from ‘PyObject* _wrap_fold_compound_path_direct(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:85517:48: 2023-09-25T22:43:49,356 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:49,357 1287 | _M_realloc_insert(end(), __x); 2023-09-25T22:43:49,357 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T22:43:49,653 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:43:49,856 inlined from ‘std::vector > vrna_fold_compound_t_path_findpath(vrna_fold_compound_t*, std::string, std::string, int, int)’ at interfaces/Python/RNA_wrap.cpp:14335:24, 2023-09-25T22:43:49,889 inlined from ‘PyObject* _wrap_fold_compound_path_findpath(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:85442:50: 2023-09-25T22:43:49,891 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:43:49,892 1287 | _M_realloc_insert(end(), __x); 2023-09-25T22:43:49,892 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T22:44:00,594 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:44:00,595 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2023-09-25T22:44:00,596 inlined from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = SwigPySequence_Cont; Seq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5307:18, 2023-09-25T22:44:00,597 inlined from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, sequence**) [with Seq = std::vector >; T = double]’ at interfaces/Python/RNA_wrap.cpp:5329:12: 2023-09-25T22:44:00,597 /usr/include/c++/12/bits/vector.tcc:364:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:00,598 364 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-09-25T22:44:00,599 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:00,600 /usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:00,600 366 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-09-25T22:44:00,601 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:01,004 In function ‘int vrna_fold_compound_t_sc_set_up(vrna_fold_compound_t*, std::vector >, unsigned int)’, 2023-09-25T22:44:01,005 inlined from ‘PyObject* _wrap_fold_compound_sc_set_up(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:79528:51: 2023-09-25T22:44:01,005 interfaces/Python/RNA_wrap.cpp:13589:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:01,006 13589 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-09-25T22:44:01,006 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:01,430 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:44:01,431 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__erase__SWIG_0(std::vector >*, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:5805:167, 2023-09-25T22:44:01,432 inlined from ‘PyObject* _wrap_DoubleVector_erase__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:22855:54, 2023-09-25T22:44:01,432 inlined from ‘PyObject* _wrap_DoubleVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:22941:48: 2023-09-25T22:44:01,433 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:01,434 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T22:44:01,434 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:01,435 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:44:01,436 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__erase__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:5806:206, 2023-09-25T22:44:01,436 inlined from ‘PyObject* _wrap_DoubleVector_erase__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:22911:54, 2023-09-25T22:44:01,437 inlined from ‘PyObject* _wrap_DoubleVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:22958:50: 2023-09-25T22:44:01,438 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:01,438 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T22:44:01,439 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:01,724 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:44:01,725 inlined from ‘void swig::erase(Sequence*, const typename Sequence::iterator&) [with Sequence = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4626:15, 2023-09-25T22:44:01,725 inlined from ‘void std_vector_Sl_double_Sg____delitem____SWIG_0(std::vector >*, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:5743:18, 2023-09-25T22:44:01,726 inlined from ‘PyObject* _wrap_DoubleVector___delitem____SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:21897:53, 2023-09-25T22:44:01,726 inlined from ‘PyObject* _wrap_DoubleVector___delitem__(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:22117:54: 2023-09-25T22:44:01,727 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:01,727 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T22:44:01,727 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:01,864 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:44:01,864 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__insert__SWIG_0(std::vector >*, std::vector >::iterator, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:5807:212, 2023-09-25T22:44:01,865 inlined from ‘PyObject* _wrap_DoubleVector_insert__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:23353:55, 2023-09-25T22:44:01,865 inlined from ‘PyObject* _wrap_DoubleVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23446:51: 2023-09-25T22:44:01,866 /usr/include/c++/12/bits/vector.tcc:157:26: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:01,867 157 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-09-25T22:44:01,867 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:01,868 /usr/include/c++/12/bits/vector.tcc:164:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:01,868 164 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-09-25T22:44:01,869 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:01,870 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:44:01,870 inlined from ‘void std_vector_Sl_double_Sg__insert__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::size_type, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:5808:213, 2023-09-25T22:44:01,871 inlined from ‘PyObject* _wrap_DoubleVector_insert__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:23412:46, 2023-09-25T22:44:01,872 inlined from ‘PyObject* _wrap_DoubleVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23470:53: 2023-09-25T22:44:01,872 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:01,873 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2023-09-25T22:44:01,874 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:02,047 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T22:44:02,048 inlined from ‘PyObject* _wrap_DoubleVector_resize__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:23250:21, 2023-09-25T22:44:02,049 inlined from ‘PyObject* _wrap_DoubleVector_resize(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23299:51: 2023-09-25T22:44:02,049 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:02,050 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2023-09-25T22:44:02,050 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:02,176 In function ‘int vrna_fold_compound_t_sc_add_stack__SWIG_1(vrna_fold_compound_t*, int, std::vector >, unsigned int)’, 2023-09-25T22:44:02,177 inlined from ‘PyObject* _wrap_fold_compound_sc_add_stack__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:79792:62: 2023-09-25T22:44:02,178 interfaces/Python/RNA_wrap.cpp:13626:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:02,178 13626 | transform(energies.begin(), energies.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-09-25T22:44:02,179 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:02,361 In function ‘int vrna_fold_compound_t_sc_set_stack__SWIG_0(vrna_fold_compound_t*, std::vector >, unsigned int)’, 2023-09-25T22:44:02,362 inlined from ‘PyObject* _wrap_fold_compound_sc_set_stack__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:79575:62: 2023-09-25T22:44:02,363 interfaces/Python/RNA_wrap.cpp:13594:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:02,363 13594 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-09-25T22:44:02,364 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:32,460 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {vrna_path_s}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T22:44:32,460 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T22:44:32,461 439 | vector<_Tp, _Alloc>:: 2023-09-25T22:44:32,461 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:32,550 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:44:32,551 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2023-09-25T22:44:32,552 inlined from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = SwigPySequence_Cont; Seq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5307:18, 2023-09-25T22:44:32,553 inlined from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, sequence**) [with Seq = std::vector >; T = vrna_path_s]’ at interfaces/Python/RNA_wrap.cpp:5329:12: 2023-09-25T22:44:32,553 /usr/include/c++/12/bits/vector.tcc:364:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:32,554 364 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-09-25T22:44:32,554 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:32,555 /usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:32,555 366 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-09-25T22:44:32,556 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:32,732 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:44:32,733 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__insert__SWIG_0(std::vector >*, std::vector >::iterator, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6913:237, 2023-09-25T22:44:32,733 inlined from ‘PyObject* _wrap_PathVector_insert__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:42502:60, 2023-09-25T22:44:32,734 inlined from ‘PyObject* _wrap_PathVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42594:49: 2023-09-25T22:44:32,735 /usr/include/c++/12/bits/vector.tcc:157:26: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:32,736 157 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-09-25T22:44:32,737 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:32,738 /usr/include/c++/12/bits/vector.tcc:164:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:32,739 164 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-09-25T22:44:32,740 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:32,741 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:44:32,742 inlined from ‘void std_vector_Sl_vrna_path_t_Sg__insert__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::size_type, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6914:238, 2023-09-25T22:44:32,743 inlined from ‘PyObject* _wrap_PathVector_insert__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:42562:51, 2023-09-25T22:44:32,744 inlined from ‘PyObject* _wrap_PathVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42616:51: 2023-09-25T22:44:32,745 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:32,747 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2023-09-25T22:44:32,747 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:32,935 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:44:32,936 inlined from ‘PyObject* _wrap_PathVector_resize__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:42400:21, 2023-09-25T22:44:32,937 inlined from ‘PyObject* _wrap_PathVector_resize(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42447:49: 2023-09-25T22:44:32,938 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:32,940 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2023-09-25T22:44:32,941 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:33,064 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:44:33,065 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__erase__SWIG_0(std::vector >*, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:6911:187, 2023-09-25T22:44:33,066 inlined from ‘PyObject* _wrap_PathVector_erase__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:42003:59, 2023-09-25T22:44:33,066 inlined from ‘PyObject* _wrap_PathVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42089:46: 2023-09-25T22:44:33,067 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:33,068 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T22:44:33,069 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:33,070 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:44:33,071 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__erase__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:6912:231, 2023-09-25T22:44:33,072 inlined from ‘PyObject* _wrap_PathVector_erase__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:42059:59, 2023-09-25T22:44:33,073 inlined from ‘PyObject* _wrap_PathVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42106:48: 2023-09-25T22:44:33,074 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:33,075 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T22:44:33,076 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:44:33,358 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T22:44:33,359 inlined from ‘void swig::erase(Sequence*, const typename Sequence::iterator&) [with Sequence = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4626:15, 2023-09-25T22:44:33,360 inlined from ‘void std_vector_Sl_vrna_path_t_Sg____delitem____SWIG_0(std::vector >*, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:6849:18, 2023-09-25T22:44:33,360 inlined from ‘PyObject* _wrap_PathVector___delitem____SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:41045:58, 2023-09-25T22:44:33,361 inlined from ‘PyObject* _wrap_PathVector___delitem__(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:41265:52: 2023-09-25T22:44:33,361 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T22:44:33,362 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T22:44:33,362 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:45:00,843 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/2Dfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/2Dfold.o -fopenmp 2023-09-25T22:45:01,096 src/ViennaRNA/2Dfold.c: In function ‘vrna_mfe_TwoD’: 2023-09-25T22:45:01,097 src/ViennaRNA/2Dfold.c:325:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,097 325 | if ((d1 >= ((md->circ) ? matrices->k_min_Fc : matrices->k_min_F5[length])) 2023-09-25T22:45:01,098 | ^~ 2023-09-25T22:45:01,099 src/ViennaRNA/2Dfold.c:326:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,100 326 | && (d1 <= ((md->circ) ? matrices->k_max_Fc : matrices->k_max_F5[length]))) { 2023-09-25T22:45:01,100 | ^~ 2023-09-25T22:45:01,101 src/ViennaRNA/2Dfold.c:328:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,102 328 | d2 <= ((md->circ) ? matrices->l_max_Fc[d1] : matrices->l_max_F5[length][d1]); 2023-09-25T22:45:01,103 | ^~ 2023-09-25T22:45:01,103 src/ViennaRNA/2Dfold.c: In function ‘vrna_backtrack5_TwoD’: 2023-09-25T22:45:01,104 src/ViennaRNA/2Dfold.c:400:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,105 400 | if (j < vc->params->model_details.min_loop_size + 2) 2023-09-25T22:45:01,105 | ^ 2023-09-25T22:45:01,106 src/ViennaRNA/2Dfold.c: In function ‘mfe_linear’: 2023-09-25T22:45:01,107 src/ViennaRNA/2Dfold.c:596:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,107 596 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2023-09-25T22:45:01,108 | ^~ 2023-09-25T22:45:01,109 src/ViennaRNA/2Dfold.c:596:64: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,109 596 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2023-09-25T22:45:01,110 | ^~ 2023-09-25T22:45:01,112 src/ViennaRNA/2Dfold.c:712:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,113 712 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2023-09-25T22:45:01,113 | ^~ 2023-09-25T22:45:01,114 src/ViennaRNA/2Dfold.c:712:80: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,114 712 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2023-09-25T22:45:01,115 | ^~ 2023-09-25T22:45:01,122 src/ViennaRNA/2Dfold.c:1032:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,123 1032 | if (j > turn + 2) { 2023-09-25T22:45:01,123 | ^ 2023-09-25T22:45:01,137 src/ViennaRNA/2Dfold.c:1402:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,138 1402 | for (cnt1 = seq_length; cnt1 >= seq_length - turn - 1; cnt1--) { 2023-09-25T22:45:01,139 | ^~ 2023-09-25T22:45:01,145 src/ViennaRNA/2Dfold.c: In function ‘backtrack_f5’: 2023-09-25T22:45:01,147 src/ViennaRNA/2Dfold.c:1622:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,147 1622 | if (j < turn + 2) 2023-09-25T22:45:01,148 | ^ 2023-09-25T22:45:01,149 src/ViennaRNA/2Dfold.c:1648:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,150 1648 | } else if ((k >= da) && (l >= db)) { 2023-09-25T22:45:01,150 | ^~ 2023-09-25T22:45:01,151 src/ViennaRNA/2Dfold.c:1648:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,151 1648 | } else if ((k >= da) && (l >= db)) { 2023-09-25T22:45:01,152 | ^~ 2023-09-25T22:45:01,152 src/ViennaRNA/2Dfold.c:1650:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,153 1650 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2023-09-25T22:45:01,153 | ^~ 2023-09-25T22:45:01,154 src/ViennaRNA/2Dfold.c:1650:50: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,155 1650 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2023-09-25T22:45:01,155 | ^~ 2023-09-25T22:45:01,156 src/ViennaRNA/2Dfold.c:1651:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,156 1651 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2023-09-25T22:45:01,157 | ^~ 2023-09-25T22:45:01,157 src/ViennaRNA/2Dfold.c:1651:60: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,158 1651 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2023-09-25T22:45:01,158 | ^~ 2023-09-25T22:45:01,163 src/ViennaRNA/2Dfold.c:1756:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,164 1756 | } else if ((k >= d1a) && (l >= d1b)) { 2023-09-25T22:45:01,164 | ^~ 2023-09-25T22:45:01,165 src/ViennaRNA/2Dfold.c:1756:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,165 1756 | } else if ((k >= d1a) && (l >= d1b)) { 2023-09-25T22:45:01,166 | ^~ 2023-09-25T22:45:01,167 In file included from src/ViennaRNA/2Dfold.c:17: 2023-09-25T22:45:01,168 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,168 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,168 | ^ 2023-09-25T22:45:01,169 src/ViennaRNA/2Dfold.c:1757:23: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,169 1757 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2023-09-25T22:45:01,170 | ^~~~ 2023-09-25T22:45:01,170 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:01,171 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,171 | ^~~ 2023-09-25T22:45:01,172 src/ViennaRNA/2Dfold.c:1757:23: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,172 1757 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2023-09-25T22:45:01,173 | ^~~~ 2023-09-25T22:45:01,173 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,174 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,174 | ^ 2023-09-25T22:45:01,175 src/ViennaRNA/2Dfold.c:1760:25: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,175 1760 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2023-09-25T22:45:01,176 | ^~~~ 2023-09-25T22:45:01,176 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:01,177 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,178 | ^~~ 2023-09-25T22:45:01,178 src/ViennaRNA/2Dfold.c:1760:25: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,179 1760 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2023-09-25T22:45:01,179 | ^~~~ 2023-09-25T22:45:01,180 src/ViennaRNA/2Dfold.c: In function ‘backtrack_c’: 2023-09-25T22:45:01,181 src/ViennaRNA/2Dfold.c:1864:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,181 1864 | if ((unsigned int)base_d1 == k) 2023-09-25T22:45:01,182 | ^~ 2023-09-25T22:45:01,182 src/ViennaRNA/2Dfold.c:1865:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,183 1865 | if ((unsigned int)base_d2 == l) 2023-09-25T22:45:01,183 | ^~ 2023-09-25T22:45:01,186 src/ViennaRNA/2Dfold.c:1910:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,187 1910 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2023-09-25T22:45:01,187 | ^ 2023-09-25T22:45:01,188 src/ViennaRNA/2Dfold.c:1910:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,189 1910 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2023-09-25T22:45:01,190 | ^ 2023-09-25T22:45:01,195 src/ViennaRNA/2Dfold.c:2018:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,195 2018 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2023-09-25T22:45:01,196 | ^ 2023-09-25T22:45:01,197 src/ViennaRNA/2Dfold.c:2018:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,197 2018 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2023-09-25T22:45:01,198 | ^ 2023-09-25T22:45:01,207 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m’: 2023-09-25T22:45:01,209 src/ViennaRNA/2Dfold.c:2293:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,210 2293 | if (d1 <= k && d2 <= l) { 2023-09-25T22:45:01,210 | ^~ 2023-09-25T22:45:01,212 src/ViennaRNA/2Dfold.c:2293:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,212 2293 | if (d1 <= k && d2 <= l) { 2023-09-25T22:45:01,213 | ^~ 2023-09-25T22:45:01,214 src/ViennaRNA/2Dfold.c:2294:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,215 2294 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2023-09-25T22:45:01,215 | ^~ 2023-09-25T22:45:01,217 src/ViennaRNA/2Dfold.c:2294:63: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,217 2294 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2023-09-25T22:45:01,218 | ^~ 2023-09-25T22:45:01,219 src/ViennaRNA/2Dfold.c:2295:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,219 2295 | if ((l - d2 >= l_min_M[my_iindx[i + 1] - j][k - d1]) && 2023-09-25T22:45:01,220 | ^~ 2023-09-25T22:45:01,221 src/ViennaRNA/2Dfold.c:2296:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,222 2296 | (l - d2 <= l_max_M[my_iindx[i + 1] - j][k - d1])) { 2023-09-25T22:45:01,223 | ^~ 2023-09-25T22:45:01,224 src/ViennaRNA/2Dfold.c:2310:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,225 2310 | if (d1 <= k && d2 <= l) { 2023-09-25T22:45:01,225 | ^~ 2023-09-25T22:45:01,227 src/ViennaRNA/2Dfold.c:2310:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,227 2310 | if (d1 <= k && d2 <= l) { 2023-09-25T22:45:01,228 | ^~ 2023-09-25T22:45:01,229 src/ViennaRNA/2Dfold.c:2311:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,230 2311 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2023-09-25T22:45:01,230 | ^~ 2023-09-25T22:45:01,236 src/ViennaRNA/2Dfold.c:2311:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,237 2311 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2023-09-25T22:45:01,237 | ^~ 2023-09-25T22:45:01,238 src/ViennaRNA/2Dfold.c:2312:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,238 2312 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2023-09-25T22:45:01,239 | ^~ 2023-09-25T22:45:01,239 src/ViennaRNA/2Dfold.c:2312:62: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,240 2312 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2023-09-25T22:45:01,240 | ^~ 2023-09-25T22:45:01,241 src/ViennaRNA/2Dfold.c:2364:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,242 2364 | if (d1 <= k && d2 <= l) { 2023-09-25T22:45:01,242 | ^~ 2023-09-25T22:45:01,244 src/ViennaRNA/2Dfold.c:2364:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,244 2364 | if (d1 <= k && d2 <= l) { 2023-09-25T22:45:01,245 | ^~ 2023-09-25T22:45:01,246 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,246 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,247 | ^ 2023-09-25T22:45:01,248 src/ViennaRNA/2Dfold.c:2365:55: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,248 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-09-25T22:45:01,249 | ^~~~ 2023-09-25T22:45:01,249 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:01,250 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,250 | ^~~ 2023-09-25T22:45:01,251 src/ViennaRNA/2Dfold.c:2365:55: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,251 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-09-25T22:45:01,252 | ^~~~ 2023-09-25T22:45:01,252 src/ViennaRNA/2Dfold.c:2365:52: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,253 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-09-25T22:45:01,254 | ^~ 2023-09-25T22:45:01,254 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,255 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,255 | ^ 2023-09-25T22:45:01,256 src/ViennaRNA/2Dfold.c:2368:24: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,256 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-09-25T22:45:01,257 | ^~~~ 2023-09-25T22:45:01,257 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:01,258 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,258 | ^~~ 2023-09-25T22:45:01,259 src/ViennaRNA/2Dfold.c:2368:24: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,259 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-09-25T22:45:01,259 | ^~~~ 2023-09-25T22:45:01,260 src/ViennaRNA/2Dfold.c:2368:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,260 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-09-25T22:45:01,261 | ^~ 2023-09-25T22:45:01,261 src/ViennaRNA/2Dfold.c:2369:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,262 2369 | if ((k - d1 - cnt1 >= k_min_C[my_iindx[u + 1] - j]) && 2023-09-25T22:45:01,262 | ^~ 2023-09-25T22:45:01,263 src/ViennaRNA/2Dfold.c:2370:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,263 2370 | (k - d1 - cnt1 <= k_max_C[my_iindx[u + 1] - j])) { 2023-09-25T22:45:01,264 | ^~ 2023-09-25T22:45:01,265 src/ViennaRNA/2Dfold.c:2371:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,266 2371 | if ((l - d2 - cnt2 >= l_min_C[my_iindx[u + 1] - j][k - d1 - cnt1]) && 2023-09-25T22:45:01,266 | ^~ 2023-09-25T22:45:01,268 src/ViennaRNA/2Dfold.c:2372:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,268 2372 | (l - d2 - cnt2 <= l_max_C[my_iindx[u + 1] - j][k - d1 - cnt1])) { 2023-09-25T22:45:01,269 | ^~ 2023-09-25T22:45:01,272 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m1’: 2023-09-25T22:45:01,274 src/ViennaRNA/2Dfold.c:2492:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,275 2492 | if (d1 <= k && d2 <= l) { 2023-09-25T22:45:01,275 | ^~ 2023-09-25T22:45:01,277 src/ViennaRNA/2Dfold.c:2492:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,277 2492 | if (d1 <= k && d2 <= l) { 2023-09-25T22:45:01,278 | ^~ 2023-09-25T22:45:01,279 src/ViennaRNA/2Dfold.c:2493:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,280 2493 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2023-09-25T22:45:01,280 | ^~ 2023-09-25T22:45:01,282 src/ViennaRNA/2Dfold.c:2493:51: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,282 2493 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2023-09-25T22:45:01,283 | ^~ 2023-09-25T22:45:01,284 src/ViennaRNA/2Dfold.c:2494:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,285 2494 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2023-09-25T22:45:01,285 | ^~ 2023-09-25T22:45:01,287 src/ViennaRNA/2Dfold.c:2494:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,288 2494 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2023-09-25T22:45:01,288 | ^~ 2023-09-25T22:45:01,291 src/ViennaRNA/2Dfold.c: In function ‘backtrack_fc’: 2023-09-25T22:45:01,293 src/ViennaRNA/2Dfold.c:2614:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,293 2614 | if (u < turn) 2023-09-25T22:45:01,294 | ^ 2023-09-25T22:45:01,298 src/ViennaRNA/2Dfold.c:2668:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,299 2668 | if (u < turn) 2023-09-25T22:45:01,299 | ^ 2023-09-25T22:45:01,307 src/ViennaRNA/2Dfold.c:2778:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,308 2778 | if (seq_length > 2 * turn) { 2023-09-25T22:45:01,309 | ^ 2023-09-25T22:45:01,314 src/ViennaRNA/2Dfold.c:2863:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,315 2863 | if ((k == referenceBPs1[my_iindx[1] - seq_length]) && 2023-09-25T22:45:01,315 | ^~ 2023-09-25T22:45:01,317 src/ViennaRNA/2Dfold.c:2864:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,317 2864 | (l == referenceBPs2[my_iindx[1] - seq_length])) 2023-09-25T22:45:01,318 | ^~ 2023-09-25T22:45:01,321 src/ViennaRNA/2Dfold.c:2881:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,322 2881 | if (u < turn) 2023-09-25T22:45:01,323 | ^ 2023-09-25T22:45:01,326 src/ViennaRNA/2Dfold.c:2904:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,327 2904 | if ((k >= d1) && (l >= d2)) { 2023-09-25T22:45:01,328 | ^~ 2023-09-25T22:45:01,329 src/ViennaRNA/2Dfold.c:2904:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,330 2904 | if ((k >= d1) && (l >= d2)) { 2023-09-25T22:45:01,331 | ^~ 2023-09-25T22:45:01,332 src/ViennaRNA/2Dfold.c:2905:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,333 2905 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2023-09-25T22:45:01,333 | ^~ 2023-09-25T22:45:01,335 src/ViennaRNA/2Dfold.c:2905:56: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,336 2905 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2023-09-25T22:45:01,336 | ^~ 2023-09-25T22:45:01,338 src/ViennaRNA/2Dfold.c:2906:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,339 2906 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2023-09-25T22:45:01,339 | ^~ 2023-09-25T22:45:01,341 src/ViennaRNA/2Dfold.c:2906:66: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,342 2906 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2023-09-25T22:45:01,343 | ^~ 2023-09-25T22:45:01,346 src/ViennaRNA/2Dfold.c:2932:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,346 2932 | if (u < turn) 2023-09-25T22:45:01,347 | ^ 2023-09-25T22:45:01,353 src/ViennaRNA/2Dfold.c:2975:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,354 2975 | if ((k >= d1) && (l >= d2)) { 2023-09-25T22:45:01,354 | ^~ 2023-09-25T22:45:01,356 src/ViennaRNA/2Dfold.c:2975:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,357 2975 | if ((k >= d1) && (l >= d2)) { 2023-09-25T22:45:01,357 | ^~ 2023-09-25T22:45:01,359 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,360 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,360 | ^ 2023-09-25T22:45:01,361 src/ViennaRNA/2Dfold.c:2976:54: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,361 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-09-25T22:45:01,361 | ^~~~ 2023-09-25T22:45:01,363 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:01,363 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,364 | ^~~ 2023-09-25T22:45:01,364 src/ViennaRNA/2Dfold.c:2976:54: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,365 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-09-25T22:45:01,365 | ^~~~ 2023-09-25T22:45:01,366 src/ViennaRNA/2Dfold.c:2976:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,367 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-09-25T22:45:01,367 | ^~ 2023-09-25T22:45:01,369 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,370 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,370 | ^ 2023-09-25T22:45:01,371 src/ViennaRNA/2Dfold.c:2977:62: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,372 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-09-25T22:45:01,372 | ^~~~ 2023-09-25T22:45:01,373 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:01,373 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,374 | ^~~ 2023-09-25T22:45:01,374 src/ViennaRNA/2Dfold.c:2977:62: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,375 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-09-25T22:45:01,375 | ^~~~ 2023-09-25T22:45:01,376 src/ViennaRNA/2Dfold.c:2977:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,376 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-09-25T22:45:01,377 | ^~ 2023-09-25T22:45:01,379 src/ViennaRNA/2Dfold.c:2979:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,379 2979 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2023-09-25T22:45:01,379 | ^~ 2023-09-25T22:45:01,381 src/ViennaRNA/2Dfold.c:2979:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,382 2979 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2023-09-25T22:45:01,383 | ^~ 2023-09-25T22:45:01,384 src/ViennaRNA/2Dfold.c:2980:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,385 2980 | if ((l - d2 - cnt2 >= l_min_C[pq][k - d1 - cnt1]) && 2023-09-25T22:45:01,385 | ^~ 2023-09-25T22:45:01,387 src/ViennaRNA/2Dfold.c:2981:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,387 2981 | (l - d2 - cnt2 <= l_max_C[pq][k - d1 - cnt1])) { 2023-09-25T22:45:01,388 | ^~ 2023-09-25T22:45:01,390 src/ViennaRNA/2Dfold.c:3002:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,391 3002 | if (seq_length > 2 * turn) { 2023-09-25T22:45:01,391 | ^ 2023-09-25T22:45:01,394 src/ViennaRNA/2Dfold.c:3018:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,395 3018 | if ((k >= d1) && (l >= d2)) { 2023-09-25T22:45:01,395 | ^~ 2023-09-25T22:45:01,397 src/ViennaRNA/2Dfold.c:3018:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,398 3018 | if ((k >= d1) && (l >= d2)) { 2023-09-25T22:45:01,398 | ^~ 2023-09-25T22:45:01,400 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,400 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,401 | ^ 2023-09-25T22:45:01,401 src/ViennaRNA/2Dfold.c:3020:58: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,402 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-09-25T22:45:01,402 | ^~~~ 2023-09-25T22:45:01,403 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:01,404 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,404 | ^~~ 2023-09-25T22:45:01,405 src/ViennaRNA/2Dfold.c:3020:58: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,406 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-09-25T22:45:01,406 | ^~~~ 2023-09-25T22:45:01,407 src/ViennaRNA/2Dfold.c:3020:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,407 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-09-25T22:45:01,407 | ^~ 2023-09-25T22:45:01,409 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,409 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,410 | ^ 2023-09-25T22:45:01,410 src/ViennaRNA/2Dfold.c:3023:32: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,411 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-09-25T22:45:01,411 | ^~~~ 2023-09-25T22:45:01,412 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:01,412 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,413 | ^~~ 2023-09-25T22:45:01,413 src/ViennaRNA/2Dfold.c:3023:32: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,413 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-09-25T22:45:01,414 | ^~~~ 2023-09-25T22:45:01,415 src/ViennaRNA/2Dfold.c:3023:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,415 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-09-25T22:45:01,416 | ^~ 2023-09-25T22:45:01,417 src/ViennaRNA/2Dfold.c:3024:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,418 3024 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2023-09-25T22:45:01,418 | ^~ 2023-09-25T22:45:01,420 src/ViennaRNA/2Dfold.c:3024:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,421 3024 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2023-09-25T22:45:01,421 | ^~ 2023-09-25T22:45:01,423 src/ViennaRNA/2Dfold.c:3025:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,423 3025 | if ((l - d2 - cnt2 >= l_min_M2[i + 1][k - d1 - cnt1]) && 2023-09-25T22:45:01,424 | ^~ 2023-09-25T22:45:01,426 src/ViennaRNA/2Dfold.c:3026:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,426 3026 | (l - d2 - cnt2 <= l_max_M2[i + 1][k - d1 - cnt1])) { 2023-09-25T22:45:01,427 | ^~ 2023-09-25T22:45:01,433 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m2’: 2023-09-25T22:45:01,436 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,436 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,437 | ^ 2023-09-25T22:45:01,437 src/ViennaRNA/2Dfold.c:3173:41: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,438 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-09-25T22:45:01,438 | ^~~~ 2023-09-25T22:45:01,439 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:01,440 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,440 | ^~~ 2023-09-25T22:45:01,440 src/ViennaRNA/2Dfold.c:3173:41: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,441 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-09-25T22:45:01,441 | ^~~~ 2023-09-25T22:45:01,443 src/ViennaRNA/2Dfold.c:3173:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,443 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-09-25T22:45:01,444 | ^~ 2023-09-25T22:45:01,446 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,446 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,447 | ^ 2023-09-25T22:45:01,448 src/ViennaRNA/2Dfold.c:3174:49: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,448 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-09-25T22:45:01,449 | ^~~~ 2023-09-25T22:45:01,450 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:01,450 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:01,451 | ^~~ 2023-09-25T22:45:01,451 src/ViennaRNA/2Dfold.c:3174:49: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:01,452 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-09-25T22:45:01,452 | ^~~~ 2023-09-25T22:45:01,453 src/ViennaRNA/2Dfold.c:3174:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:01,454 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-09-25T22:45:01,454 | ^~ 2023-09-25T22:45:01,456 src/ViennaRNA/2Dfold.c:3175:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,463 3175 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2023-09-25T22:45:01,464 | ^~ 2023-09-25T22:45:01,465 src/ViennaRNA/2Dfold.c:3175:65: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,465 3175 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2023-09-25T22:45:01,466 | ^~ 2023-09-25T22:45:01,467 src/ViennaRNA/2Dfold.c:3176:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,467 3176 | if ((l - d2 - cnt2 >= l_min_M1[j3][k - d1 - cnt1]) && 2023-09-25T22:45:01,468 | ^~ 2023-09-25T22:45:01,469 src/ViennaRNA/2Dfold.c:3177:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,469 3177 | (l - d2 - cnt2 <= l_max_M1[j3][k - d1 - cnt1])) { 2023-09-25T22:45:01,470 | ^~ 2023-09-25T22:45:01,476 src/ViennaRNA/2Dfold.c: In function ‘mfe_circ’: 2023-09-25T22:45:01,479 src/ViennaRNA/2Dfold.c:3557:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,480 3557 | if (u < turn) 2023-09-25T22:45:01,480 | ^ 2023-09-25T22:45:01,488 src/ViennaRNA/2Dfold.c:3631:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,488 3631 | if (u < turn) 2023-09-25T22:45:01,489 | ^ 2023-09-25T22:45:01,504 src/ViennaRNA/2Dfold.c:3796:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:01,504 3796 | if (seq_length > 2 * turn) { 2023-09-25T22:45:01,505 | ^ 2023-09-25T22:45:12,022 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/2Dpfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/2Dpfold.o -fopenmp 2023-09-25T22:45:12,256 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear’: 2023-09-25T22:45:12,256 src/ViennaRNA/2Dpfold.c:431:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,257 431 | for (i = (j > turn ? (j - turn) : 1); i <= j; i++) { 2023-09-25T22:45:12,258 | ^ 2023-09-25T22:45:12,261 src/ViennaRNA/2Dpfold.c:583:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,261 583 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T22:45:12,262 | ^~ 2023-09-25T22:45:12,262 src/ViennaRNA/2Dpfold.c:583:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,263 583 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T22:45:12,264 | ^~ 2023-09-25T22:45:12,266 src/ViennaRNA/2Dpfold.c:666:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,267 666 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T22:45:12,267 | ^~ 2023-09-25T22:45:12,268 src/ViennaRNA/2Dpfold.c:666:78: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,269 666 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T22:45:12,269 | ^~ 2023-09-25T22:45:12,271 src/ViennaRNA/2Dpfold.c:796:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,272 796 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T22:45:12,272 | ^~ 2023-09-25T22:45:12,273 src/ViennaRNA/2Dpfold.c:796:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,274 796 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T22:45:12,274 | ^~ 2023-09-25T22:45:12,275 src/ViennaRNA/2Dpfold.c:828:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,275 828 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T22:45:12,275 | ^~ 2023-09-25T22:45:12,276 src/ViennaRNA/2Dpfold.c:828:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,276 828 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T22:45:12,277 | ^~ 2023-09-25T22:45:12,281 src/ViennaRNA/2Dpfold.c:952:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,281 952 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T22:45:12,282 | ^~ 2023-09-25T22:45:12,282 src/ViennaRNA/2Dpfold.c:952:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,283 952 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T22:45:12,283 | ^~ 2023-09-25T22:45:12,285 src/ViennaRNA/2Dpfold.c:991:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,285 991 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T22:45:12,286 | ^~ 2023-09-25T22:45:12,287 src/ViennaRNA/2Dpfold.c:991:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,287 991 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T22:45:12,288 | ^~ 2023-09-25T22:45:12,291 src/ViennaRNA/2Dpfold.c:1121:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,291 1121 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T22:45:12,292 | ^~ 2023-09-25T22:45:12,292 src/ViennaRNA/2Dpfold.c:1121:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,293 1121 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T22:45:12,294 | ^~ 2023-09-25T22:45:12,297 src/ViennaRNA/2Dpfold.c:1203:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,297 1203 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T22:45:12,298 | ^~ 2023-09-25T22:45:12,298 src/ViennaRNA/2Dpfold.c:1203:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,299 1203 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T22:45:12,300 | ^~ 2023-09-25T22:45:12,310 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_circ’: 2023-09-25T22:45:12,312 src/ViennaRNA/2Dpfold.c:1631:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,313 1631 | if (u < turn) 2023-09-25T22:45:12,313 | ^ 2023-09-25T22:45:12,328 src/ViennaRNA/2Dpfold.c:1849:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,329 1849 | if (seq_length > 2 * turn - 3) { 2023-09-25T22:45:12,329 | ^ 2023-09-25T22:45:12,352 src/ViennaRNA/2Dpfold.c: In function ‘vrna_pbacktrack5_TwoD’: 2023-09-25T22:45:12,355 src/ViennaRNA/2Dpfold.c:2300:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,356 2300 | if ((d1 == referenceBPs1[sn]) 2023-09-25T22:45:12,357 | ^~ 2023-09-25T22:45:12,359 src/ViennaRNA/2Dpfold.c:2301:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,359 2301 | && (d2 == referenceBPs2[sn])) { 2023-09-25T22:45:12,360 | ^~ 2023-09-25T22:45:12,363 src/ViennaRNA/2Dpfold.c:2312:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,363 2312 | if (d1 >= da && d2 >= db) { 2023-09-25T22:45:12,364 | ^~ 2023-09-25T22:45:12,366 src/ViennaRNA/2Dpfold.c:2312:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,367 2312 | if (d1 >= da && d2 >= db) { 2023-09-25T22:45:12,368 | ^~ 2023-09-25T22:45:12,370 src/ViennaRNA/2Dpfold.c:2314:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,370 2314 | (d1 - da >= k_min_Q[my_iindx[i + 1] - length]) 2023-09-25T22:45:12,371 | ^~ 2023-09-25T22:45:12,373 src/ViennaRNA/2Dpfold.c:2315:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,374 2315 | && (d1 - da <= k_max_Q[my_iindx[i + 1] - length])) { 2023-09-25T22:45:12,374 | ^~ 2023-09-25T22:45:12,376 src/ViennaRNA/2Dpfold.c:2317:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,377 2317 | (d2 - db >= l_min_Q[my_iindx[i + 1] - length][d1 - da]) 2023-09-25T22:45:12,378 | ^~ 2023-09-25T22:45:12,380 src/ViennaRNA/2Dpfold.c:2318:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,381 2318 | && (d2 - db <= l_max_Q[my_iindx[i + 1] - length][d1 - da])) 2023-09-25T22:45:12,381 | ^~ 2023-09-25T22:45:12,386 src/ViennaRNA/2Dpfold.c:2346:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,387 2346 | if ((d1 >= da) 2023-09-25T22:45:12,387 | ^~ 2023-09-25T22:45:12,389 src/ViennaRNA/2Dpfold.c:2347:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,390 2347 | && (d2 >= db) 2023-09-25T22:45:12,391 | ^~ 2023-09-25T22:45:12,393 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-09-25T22:45:12,394 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,395 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:12,396 | ^ 2023-09-25T22:45:12,396 src/ViennaRNA/2Dpfold.c:2351:26: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:12,397 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-09-25T22:45:12,397 | ^~~~ 2023-09-25T22:45:12,398 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:12,398 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:12,399 | ^~~ 2023-09-25T22:45:12,399 src/ViennaRNA/2Dpfold.c:2351:26: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:12,400 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-09-25T22:45:12,400 | ^~~~ 2023-09-25T22:45:12,401 src/ViennaRNA/2Dpfold.c:2351:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,402 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-09-25T22:45:12,402 | ^~ 2023-09-25T22:45:12,403 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,404 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:12,404 | ^ 2023-09-25T22:45:12,405 src/ViennaRNA/2Dpfold.c:2354:28: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:12,406 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-09-25T22:45:12,406 | ^~~~ 2023-09-25T22:45:12,407 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:12,408 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:12,408 | ^~~ 2023-09-25T22:45:12,409 src/ViennaRNA/2Dpfold.c:2354:28: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:12,409 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-09-25T22:45:12,410 | ^~~~ 2023-09-25T22:45:12,410 src/ViennaRNA/2Dpfold.c:2354:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,411 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-09-25T22:45:12,411 | ^~ 2023-09-25T22:45:12,412 src/ViennaRNA/2Dpfold.c:2356:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,413 2356 | if ((d1 - da - cnt1 >= k_min_Q[my_iindx[j + 1] - length]) 2023-09-25T22:45:12,413 | ^~ 2023-09-25T22:45:12,414 src/ViennaRNA/2Dpfold.c:2357:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,414 2357 | && (d1 - da - cnt1 <= k_max_Q[my_iindx[j + 1] - length])) { 2023-09-25T22:45:12,415 | ^~ 2023-09-25T22:45:12,416 src/ViennaRNA/2Dpfold.c:2358:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,417 2358 | if ((d2 - db - cnt2 >= l_min_Q[my_iindx[j + 1] - length][d1 - da - cnt1]) 2023-09-25T22:45:12,417 | ^~ 2023-09-25T22:45:12,418 src/ViennaRNA/2Dpfold.c:2359:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,419 2359 | && (d2 - db - cnt2 <= l_max_Q[my_iindx[j + 1] - length][d1 - da - cnt1])) { 2023-09-25T22:45:12,420 | ^~ 2023-09-25T22:45:12,422 src/ViennaRNA/2Dpfold.c:2383:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,422 2383 | if (d1 >= da && d2 >= db) { 2023-09-25T22:45:12,423 | ^~ 2023-09-25T22:45:12,424 src/ViennaRNA/2Dpfold.c:2383:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,425 2383 | if (d1 >= da && d2 >= db) { 2023-09-25T22:45:12,425 | ^~ 2023-09-25T22:45:12,428 src/ViennaRNA/2Dpfold.c: In function ‘pbacktrack_circ’: 2023-09-25T22:45:12,431 src/ViennaRNA/2Dpfold.c:2542:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,431 2542 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2023-09-25T22:45:12,432 | ^~ 2023-09-25T22:45:12,433 src/ViennaRNA/2Dpfold.c:2542:83: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,434 2542 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2023-09-25T22:45:12,435 | ^~ 2023-09-25T22:45:12,441 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcH’: 2023-09-25T22:45:12,444 src/ViennaRNA/2Dpfold.c:2746:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,444 2746 | if (((cnt1 + da) == d1) 2023-09-25T22:45:12,445 | ^~ 2023-09-25T22:45:12,446 src/ViennaRNA/2Dpfold.c:2747:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,447 2747 | && ((cnt2 + db) == d2)) { 2023-09-25T22:45:12,447 | ^~ 2023-09-25T22:45:12,461 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcI’: 2023-09-25T22:45:12,463 src/ViennaRNA/2Dpfold.c:3025:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,464 3025 | if (((cnt1 + cnt3 + da) == d1) 2023-09-25T22:45:12,464 | ^~ 2023-09-25T22:45:12,466 src/ViennaRNA/2Dpfold.c:3026:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,467 3026 | && ((cnt2 + cnt4 + db) == d2)) { 2023-09-25T22:45:12,467 | ^~ 2023-09-25T22:45:12,471 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcM’: 2023-09-25T22:45:12,474 src/ViennaRNA/2Dpfold.c:3211:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,475 3211 | if (((cnt1 + cnt3 + da) == d1) 2023-09-25T22:45:12,475 | ^~ 2023-09-25T22:45:12,477 src/ViennaRNA/2Dpfold.c:3212:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,478 3212 | && ((cnt2 + cnt4 + db) == d2)) { 2023-09-25T22:45:12,478 | ^~ 2023-09-25T22:45:12,485 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm2’: 2023-09-25T22:45:12,488 src/ViennaRNA/2Dpfold.c:3383:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,488 3383 | if (((cnt1 + cnt3 + da) == d1) 2023-09-25T22:45:12,489 | ^~ 2023-09-25T22:45:12,491 src/ViennaRNA/2Dpfold.c:3384:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,491 3384 | && ((cnt2 + cnt4 + db) == d2)) { 2023-09-25T22:45:12,492 | ^~ 2023-09-25T22:45:12,501 src/ViennaRNA/2Dpfold.c: In function ‘backtrack’: 2023-09-25T22:45:12,504 src/ViennaRNA/2Dpfold.c:3578:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,505 3578 | if ((da == d1) && (db == d2)) 2023-09-25T22:45:12,505 | ^~ 2023-09-25T22:45:12,508 src/ViennaRNA/2Dpfold.c:3578:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,508 3578 | if ((da == d1) && (db == d2)) 2023-09-25T22:45:12,509 | ^~ 2023-09-25T22:45:12,515 src/ViennaRNA/2Dpfold.c:3613:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,516 3613 | if (d1 >= da && d2 >= db) { 2023-09-25T22:45:12,516 | ^~ 2023-09-25T22:45:12,519 src/ViennaRNA/2Dpfold.c:3613:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,519 3613 | if (d1 >= da && d2 >= db) { 2023-09-25T22:45:12,520 | ^~ 2023-09-25T22:45:12,522 src/ViennaRNA/2Dpfold.c:3614:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,523 3614 | if ((d1 - da >= k_min_Q_B[my_iindx[k] - l]) && 2023-09-25T22:45:12,523 | ^~ 2023-09-25T22:45:12,526 src/ViennaRNA/2Dpfold.c:3615:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,526 3615 | (d1 - da <= k_max_Q_B[my_iindx[k] - l])) { 2023-09-25T22:45:12,527 | ^~ 2023-09-25T22:45:12,529 src/ViennaRNA/2Dpfold.c:3616:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,530 3616 | if ((d2 - db >= l_min_Q_B[my_iindx[k] - l][d1 - da]) && 2023-09-25T22:45:12,530 | ^~ 2023-09-25T22:45:12,532 src/ViennaRNA/2Dpfold.c:3617:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,533 3617 | (d2 - db <= l_max_Q_B[my_iindx[k] - l][d1 - da])) { 2023-09-25T22:45:12,534 | ^~ 2023-09-25T22:45:12,544 src/ViennaRNA/2Dpfold.c:3789:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,544 3789 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-09-25T22:45:12,545 | ^~ 2023-09-25T22:45:12,548 src/ViennaRNA/2Dpfold.c:3789:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,548 3789 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-09-25T22:45:12,549 | ^~ 2023-09-25T22:45:12,552 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,552 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:12,552 | ^ 2023-09-25T22:45:12,553 src/ViennaRNA/2Dpfold.c:3790:54: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:12,553 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T22:45:12,554 | ^~~~ 2023-09-25T22:45:12,556 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:12,556 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:12,557 | ^~~ 2023-09-25T22:45:12,557 src/ViennaRNA/2Dpfold.c:3790:54: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:12,557 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T22:45:12,558 | ^~~~ 2023-09-25T22:45:12,560 src/ViennaRNA/2Dpfold.c:3790:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,560 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T22:45:12,561 | ^~ 2023-09-25T22:45:12,563 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,564 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:12,565 | ^ 2023-09-25T22:45:12,565 src/ViennaRNA/2Dpfold.c:3792:26: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:12,566 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T22:45:12,567 | ^~~~ 2023-09-25T22:45:12,568 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:12,568 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:12,569 | ^~~ 2023-09-25T22:45:12,569 src/ViennaRNA/2Dpfold.c:3792:26: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:12,570 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T22:45:12,571 | ^~~~ 2023-09-25T22:45:12,572 src/ViennaRNA/2Dpfold.c:3792:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,572 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T22:45:12,573 | ^~ 2023-09-25T22:45:12,575 src/ViennaRNA/2Dpfold.c:3793:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,576 3793 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2023-09-25T22:45:12,576 | ^~ 2023-09-25T22:45:12,579 src/ViennaRNA/2Dpfold.c:3793:77: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,580 3793 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2023-09-25T22:45:12,580 | ^~ 2023-09-25T22:45:12,583 src/ViennaRNA/2Dpfold.c:3794:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,583 3794 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2023-09-25T22:45:12,584 | ^~ 2023-09-25T22:45:12,586 src/ViennaRNA/2Dpfold.c:3795:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,587 3795 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) 2023-09-25T22:45:12,587 | ^~ 2023-09-25T22:45:12,591 src/ViennaRNA/2Dpfold.c:3806:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,591 3806 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-09-25T22:45:12,592 | ^~ 2023-09-25T22:45:12,594 src/ViennaRNA/2Dpfold.c:3806:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,595 3806 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-09-25T22:45:12,595 | ^~ 2023-09-25T22:45:12,598 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,599 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:12,599 | ^ 2023-09-25T22:45:12,600 src/ViennaRNA/2Dpfold.c:3807:54: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:12,600 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T22:45:12,601 | ^~~~ 2023-09-25T22:45:12,602 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:12,603 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:12,604 | ^~~ 2023-09-25T22:45:12,604 src/ViennaRNA/2Dpfold.c:3807:54: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:12,605 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T22:45:12,605 | ^~~~ 2023-09-25T22:45:12,607 src/ViennaRNA/2Dpfold.c:3807:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,607 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T22:45:12,608 | ^~ 2023-09-25T22:45:12,610 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,611 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:12,612 | ^ 2023-09-25T22:45:12,612 src/ViennaRNA/2Dpfold.c:3809:26: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:12,613 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T22:45:12,613 | ^~~~ 2023-09-25T22:45:12,615 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:12,615 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:12,616 | ^~~ 2023-09-25T22:45:12,616 src/ViennaRNA/2Dpfold.c:3809:26: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:12,617 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T22:45:12,617 | ^~~~ 2023-09-25T22:45:12,619 src/ViennaRNA/2Dpfold.c:3809:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,619 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T22:45:12,620 | ^~ 2023-09-25T22:45:12,622 src/ViennaRNA/2Dpfold.c:3810:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,623 3810 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && 2023-09-25T22:45:12,623 | ^~ 2023-09-25T22:45:12,626 src/ViennaRNA/2Dpfold.c:3811:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,626 3811 | (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) { 2023-09-25T22:45:12,627 | ^~ 2023-09-25T22:45:12,629 src/ViennaRNA/2Dpfold.c:3812:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,630 3812 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2023-09-25T22:45:12,630 | ^~ 2023-09-25T22:45:12,633 src/ViennaRNA/2Dpfold.c:3813:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,634 3813 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) { 2023-09-25T22:45:12,634 | ^~ 2023-09-25T22:45:12,638 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm1’: 2023-09-25T22:45:12,641 src/ViennaRNA/2Dpfold.c:3940:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,642 3940 | if (d1 >= da && d2 >= db) { 2023-09-25T22:45:12,643 | ^~ 2023-09-25T22:45:12,645 src/ViennaRNA/2Dpfold.c:3940:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,646 3940 | if (d1 >= da && d2 >= db) { 2023-09-25T22:45:12,647 | ^~ 2023-09-25T22:45:12,649 src/ViennaRNA/2Dpfold.c:3941:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,650 3941 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2023-09-25T22:45:12,650 | ^~ 2023-09-25T22:45:12,653 src/ViennaRNA/2Dpfold.c:3941:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,654 3941 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2023-09-25T22:45:12,654 | ^~ 2023-09-25T22:45:12,657 src/ViennaRNA/2Dpfold.c:3942:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,658 3942 | if ((d2 - db >= l_min_Q_B[ii - l][d1 - da]) && 2023-09-25T22:45:12,658 | ^~ 2023-09-25T22:45:12,661 src/ViennaRNA/2Dpfold.c:3943:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,661 3943 | (d2 - db <= l_max_Q_B[ii - l][d1 - da])) { 2023-09-25T22:45:12,662 | ^~ 2023-09-25T22:45:12,671 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm’: 2023-09-25T22:45:12,675 src/ViennaRNA/2Dpfold.c:4157:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,675 4157 | if (d1 >= da2 && d2 >= db2) { 2023-09-25T22:45:12,676 | ^~ 2023-09-25T22:45:12,679 src/ViennaRNA/2Dpfold.c:4157:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,679 4157 | if (d1 >= da2 && d2 >= db2) { 2023-09-25T22:45:12,680 | ^~ 2023-09-25T22:45:12,683 src/ViennaRNA/2Dpfold.c:4158:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,683 4158 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2023-09-25T22:45:12,684 | ^~ 2023-09-25T22:45:12,687 src/ViennaRNA/2Dpfold.c:4158:69: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,688 4158 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2023-09-25T22:45:12,688 | ^~ 2023-09-25T22:45:12,691 src/ViennaRNA/2Dpfold.c:4159:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,692 4159 | if ((d2 - db2 >= l_min_Q_M1[jindx[j] + k][d1 - da2]) && 2023-09-25T22:45:12,692 | ^~ 2023-09-25T22:45:12,695 src/ViennaRNA/2Dpfold.c:4160:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,695 4160 | (d2 - db2 <= l_max_Q_M1[jindx[j] + k][d1 - da2])) { 2023-09-25T22:45:12,696 | ^~ 2023-09-25T22:45:12,699 src/ViennaRNA/2Dpfold.c:4173:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,700 4173 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2023-09-25T22:45:12,700 | ^~ 2023-09-25T22:45:12,703 src/ViennaRNA/2Dpfold.c:4173:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,704 4173 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2023-09-25T22:45:12,705 | ^~ 2023-09-25T22:45:12,708 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,708 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:12,709 | ^ 2023-09-25T22:45:12,709 src/ViennaRNA/2Dpfold.c:4175:26: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:12,710 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-09-25T22:45:12,710 | ^~~~ 2023-09-25T22:45:12,712 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:12,713 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:12,713 | ^~~ 2023-09-25T22:45:12,714 src/ViennaRNA/2Dpfold.c:4175:26: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:12,715 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-09-25T22:45:12,715 | ^~~~ 2023-09-25T22:45:12,717 src/ViennaRNA/2Dpfold.c:4175:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,717 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-09-25T22:45:12,718 | ^~ 2023-09-25T22:45:12,721 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,721 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:12,722 | ^ 2023-09-25T22:45:12,722 src/ViennaRNA/2Dpfold.c:4177:28: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:12,723 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T22:45:12,723 | ^~~~ 2023-09-25T22:45:12,725 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:12,726 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:12,726 | ^~~ 2023-09-25T22:45:12,727 src/ViennaRNA/2Dpfold.c:4177:28: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:12,727 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T22:45:12,728 | ^~~~ 2023-09-25T22:45:12,730 src/ViennaRNA/2Dpfold.c:4177:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,730 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T22:45:12,731 | ^~ 2023-09-25T22:45:12,734 src/ViennaRNA/2Dpfold.c:4178:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,734 4178 | if ((d1 - da - cnt1 >= k_min_Q_M1[jindx[j] + k]) && 2023-09-25T22:45:12,735 | ^~ 2023-09-25T22:45:12,738 src/ViennaRNA/2Dpfold.c:4179:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,738 4179 | (d1 - da - cnt1 <= k_max_Q_M1[jindx[j] + k])) { 2023-09-25T22:45:12,739 | ^~ 2023-09-25T22:45:12,742 src/ViennaRNA/2Dpfold.c:4180:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,742 4180 | if ((d2 - db - cnt2 >= l_min_Q_M1[jindx[j] + k][d1 - da - cnt1]) && 2023-09-25T22:45:12,743 | ^~ 2023-09-25T22:45:12,746 src/ViennaRNA/2Dpfold.c:4181:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:12,746 4181 | (d2 - db - cnt2 <= l_max_Q_M1[jindx[j] + k][d1 - da - cnt1])) { 2023-09-25T22:45:12,747 | ^~ 2023-09-25T22:45:12,752 src/ViennaRNA/2Dpfold.c:4212:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,752 4212 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2023-09-25T22:45:12,753 | ^~ 2023-09-25T22:45:12,756 src/ViennaRNA/2Dpfold.c:4212:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:12,757 4212 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2023-09-25T22:45:12,758 | ^~ 2023-09-25T22:45:19,726 In function ‘updatePosteriorBoundaries’, 2023-09-25T22:45:19,727 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:587:21: 2023-09-25T22:45:19,728 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post_b’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:19,729 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-09-25T22:45:19,729 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T22:45:19,730 src/ViennaRNA/2Dpfold.c:467:57: note: ‘l_max_post_b’ was declared here 2023-09-25T22:45:19,730 467 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2023-09-25T22:45:19,731 | ^~~~~~~~~~~~ 2023-09-25T22:45:19,731 In function ‘updatePosteriorBoundaries’, 2023-09-25T22:45:19,732 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:587:21: 2023-09-25T22:45:19,732 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post_b’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:19,732 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-09-25T22:45:19,733 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T22:45:19,733 src/ViennaRNA/2Dpfold.c:467:42: note: ‘l_min_post_b’ was declared here 2023-09-25T22:45:19,734 467 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2023-09-25T22:45:19,734 | ^~~~~~~~~~~~ 2023-09-25T22:45:19,735 In function ‘updatePosteriorBoundaries’, 2023-09-25T22:45:19,735 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:1210:21: 2023-09-25T22:45:19,736 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:19,736 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-09-25T22:45:19,737 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T22:45:19,737 src/ViennaRNA/2Dpfold.c:1041:49: note: ‘l_max_post’ was declared here 2023-09-25T22:45:19,738 1041 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2023-09-25T22:45:19,739 | ^~~~~~~~~~ 2023-09-25T22:45:19,739 In function ‘updatePosteriorBoundaries’, 2023-09-25T22:45:19,740 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:1210:21: 2023-09-25T22:45:19,740 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:19,741 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-09-25T22:45:19,742 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T22:45:19,742 src/ViennaRNA/2Dpfold.c:1041:36: note: ‘l_min_post’ was declared here 2023-09-25T22:45:19,743 1041 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2023-09-25T22:45:19,743 | ^~~~~~~~~~ 2023-09-25T22:45:19,744 In function ‘updatePosteriorBoundaries’, 2023-09-25T22:45:19,745 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:958:17: 2023-09-25T22:45:19,745 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post_m’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:19,746 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-09-25T22:45:19,747 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T22:45:19,747 src/ViennaRNA/2Dpfold.c:711:55: note: ‘l_max_post_m’ was declared here 2023-09-25T22:45:19,748 711 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2023-09-25T22:45:19,749 | ^~~~~~~~~~~~ 2023-09-25T22:45:19,750 In function ‘updatePosteriorBoundaries’, 2023-09-25T22:45:19,750 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:958:17: 2023-09-25T22:45:19,751 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post_m’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:19,751 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-09-25T22:45:19,752 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T22:45:19,753 src/ViennaRNA/2Dpfold.c:711:40: note: ‘l_min_post_m’ was declared here 2023-09-25T22:45:19,753 711 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2023-09-25T22:45:19,754 | ^~~~~~~~~~~~ 2023-09-25T22:45:23,728 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/LPfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/LPfold.o -fopenmp 2023-09-25T22:45:23,970 src/ViennaRNA/LPfold.c: In function ‘free_dp_matrices’: 2023-09-25T22:45:23,970 src/ViennaRNA/LPfold.c:514:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:45:23,971 514 | if (n > winSize + MAXLOOP) 2023-09-25T22:45:23,971 | ^ 2023-09-25T22:45:23,974 src/ViennaRNA/LPfold.c: In function ‘rotate_constraints’: 2023-09-25T22:45:23,974 src/ViennaRNA/LPfold.c:667:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:23,975 667 | if (j + 1 <= fc->length) { 2023-09-25T22:45:23,975 | ^~ 2023-09-25T22:45:27,585 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/Lfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/Lfold.o -fopenmp 2023-09-25T22:45:27,801 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/MEA.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/MEA.o -fopenmp 2023-09-25T22:45:28,067 src/ViennaRNA/MEA.c: In function ‘prune_sort’: 2023-09-25T22:45:28,068 src/ViennaRNA/MEA.c:321:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:28,069 321 | for (i = pc->i; i <= pc->j; i++) 2023-09-25T22:45:28,070 | ^~ 2023-09-25T22:45:28,070 src/ViennaRNA/MEA.c:342:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:28,071 342 | for (i = pc->i; i <= pc->j; i++) 2023-09-25T22:45:28,072 | ^~ 2023-09-25T22:45:28,073 src/ViennaRNA/MEA.c:349:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:28,074 349 | if (pc->i > n) 2023-09-25T22:45:28,074 | ^ 2023-09-25T22:45:28,075 src/ViennaRNA/MEA.c:358:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:28,076 358 | for (i = pc->i; i <= pc->j; i++) 2023-09-25T22:45:28,077 | ^~ 2023-09-25T22:45:28,715 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/ProfileAln.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ProfileAln.o -fopenmp 2023-09-25T22:45:29,497 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/ProfileDist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ProfileDist.o -fopenmp 2023-09-25T22:45:29,807 src/ViennaRNA/ProfileDist.c: In function ‘PrfEditCost’: 2023-09-25T22:45:29,807 src/ViennaRNA/ProfileDist.c:199:10: warning: ‘dist’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:29,808 199 | return dist; 2023-09-25T22:45:29,809 | ^~~~ 2023-09-25T22:45:29,809 src/ViennaRNA/ProfileDist.c:180:11: note: ‘dist’ was declared here 2023-09-25T22:45:29,810 180 | double dist; 2023-09-25T22:45:29,810 | ^~~~ 2023-09-25T22:45:30,167 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/RNAstruct.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/RNAstruct.o -fopenmp 2023-09-25T22:45:30,304 src/ViennaRNA/RNAstruct.c: In function ‘b2Shapiro’: 2023-09-25T22:45:30,305 src/ViennaRNA/RNAstruct.c:302:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:45:30,306 302 | for (k = 0; k < strlen(tt); k++) 2023-09-25T22:45:30,307 | ^ 2023-09-25T22:45:30,307 src/ViennaRNA/RNAstruct.c:305:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:45:30,308 305 | for (k = 0; k < strlen(tt); k++) 2023-09-25T22:45:30,309 | ^ 2023-09-25T22:45:30,310 src/ViennaRNA/RNAstruct.c: In function ‘expand_Shapiro’: 2023-09-25T22:45:30,310 src/ViennaRNA/RNAstruct.c:445:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:45:30,311 445 | while (i < strlen(structure) - 1) { 2023-09-25T22:45:30,312 | ^ 2023-09-25T22:45:30,314 src/ViennaRNA/RNAstruct.c: In function ‘unexpand_aligned_F’: 2023-09-25T22:45:30,315 src/ViennaRNA/RNAstruct.c:599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:45:30,316 599 | for (i = 0, l = 0; i < strlen(align[0]); i++) { 2023-09-25T22:45:30,316 | ^ 2023-09-25T22:45:31,114 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/ali_plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ali_plex.o -fopenmp 2023-09-25T22:45:31,354 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold’: 2023-09-25T22:45:31,355 src/ViennaRNA/ali_plex.c:230:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:45:31,356 230 | if (strlen(s1[s]) != n3) 2023-09-25T22:45:31,357 | ^~ 2023-09-25T22:45:31,357 src/ViennaRNA/ali_plex.c:233:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:45:31,358 233 | if (strlen(s2[s]) != n4) 2023-09-25T22:45:31,358 | ^~ 2023-09-25T22:45:31,365 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2023-09-25T22:45:31,366 src/ViennaRNA/ali_plex.c:509:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:45:31,366 509 | if (strlen(s1[s]) != n1) 2023-09-25T22:45:31,367 | ^~ 2023-09-25T22:45:31,367 src/ViennaRNA/ali_plex.c:512:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:45:31,368 512 | if (strlen(s2[s]) != n2) 2023-09-25T22:45:31,368 | ^~ 2023-09-25T22:45:32,916 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold_XS’: 2023-09-25T22:45:32,917 src/ViennaRNA/ali_plex.c:1032:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:45:32,918 1032 | if (strlen(s1[s]) != n3) 2023-09-25T22:45:32,919 | ^~ 2023-09-25T22:45:32,919 src/ViennaRNA/ali_plex.c:1035:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:45:32,920 1035 | if (strlen(s2[s]) != n4) 2023-09-25T22:45:32,920 | ^~ 2023-09-25T22:45:32,934 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-09-25T22:45:32,936 src/ViennaRNA/ali_plex.c:1347:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:45:32,936 1347 | if (strlen(s1[s]) != n1) 2023-09-25T22:45:32,937 | ^~ 2023-09-25T22:45:32,937 src/ViennaRNA/ali_plex.c:1350:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:45:32,938 1350 | if (strlen(s2[s]) != n2) 2023-09-25T22:45:32,939 | ^~ 2023-09-25T22:45:37,174 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2023-09-25T22:45:37,175 src/ViennaRNA/ali_plex.c:950:62: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:37,175 950 | int end_q = MIN2(n2 - 10, max_pos_j + alignment_length - 1); 2023-09-25T22:45:37,176 | ^ 2023-09-25T22:45:37,177 src/ViennaRNA/ali_plex.c:466:9: note: ‘max_pos_j’ was declared here 2023-09-25T22:45:37,177 466 | int max_pos_j; 2023-09-25T22:45:37,178 | ^~~~~~~~~ 2023-09-25T22:45:37,178 src/ViennaRNA/ali_plex.c:947:57: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:37,179 947 | int begin_t = MAX2(11, max_pos - alignment_length + 1); 2023-09-25T22:45:37,180 | ^ 2023-09-25T22:45:37,180 src/ViennaRNA/ali_plex.c:465:9: note: ‘max_pos’ was declared here 2023-09-25T22:45:37,181 465 | int max_pos; /* get position of the best hit */ 2023-09-25T22:45:37,182 | ^~~~~~~ 2023-09-25T22:45:37,183 src/ViennaRNA/ali_plex.c:787:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:37,184 787 | position_j[i + delta] = min_j_colonne; 2023-09-25T22:45:37,184 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T22:45:37,185 src/ViennaRNA/ali_plex.c:468:9: note: ‘min_j_colonne’ was declared here 2023-09-25T22:45:37,185 468 | int min_j_colonne; 2023-09-25T22:45:37,186 | ^~~~~~~~~~~~~ 2023-09-25T22:45:38,436 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-09-25T22:45:38,437 src/ViennaRNA/ali_plex.c:1818:64: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:38,438 1818 | int end_q = MIN2(n2 - 10, max_pos_j + alignment_length - 1); 2023-09-25T22:45:38,438 | ^ 2023-09-25T22:45:38,439 src/ViennaRNA/ali_plex.c:1295:9: note: ‘max_pos_j’ was declared here 2023-09-25T22:45:38,439 1295 | int max_pos_j; 2023-09-25T22:45:38,440 | ^~~~~~~~~ 2023-09-25T22:45:38,440 In function ‘aliplot_max_XS’, 2023-09-25T22:45:38,440 inlined from ‘aliLduplexfold_XS’ at src/ViennaRNA/ali_plex.c:1659:3: 2023-09-25T22:45:38,441 src/ViennaRNA/ali_plex.c:1812:5: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:38,441 1812 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-09-25T22:45:38,442 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:45:38,442 1813 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-09-25T22:45:38,443 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:45:38,443 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-09-25T22:45:38,444 src/ViennaRNA/ali_plex.c:1294:9: note: ‘max_pos’ was declared here 2023-09-25T22:45:38,444 1294 | int max_pos; /* get position of the best hit */ 2023-09-25T22:45:38,445 | ^~~~~~~ 2023-09-25T22:45:38,446 src/ViennaRNA/ali_plex.c:1636:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:38,447 1636 | position_j[i + delta] = min_j_colonne; 2023-09-25T22:45:38,447 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T22:45:38,448 src/ViennaRNA/ali_plex.c:1297:9: note: ‘min_j_colonne’ was declared here 2023-09-25T22:45:38,448 1297 | int min_j_colonne; 2023-09-25T22:45:38,449 | ^~~~~~~~~~~~~ 2023-09-25T22:45:39,535 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/alifold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/alifold.o -fopenmp 2023-09-25T22:45:40,245 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/alipfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/alipfold.o -fopenmp 2023-09-25T22:45:40,487 src/ViennaRNA/alipfold.c: In function ‘wrap_alipf_fold’: 2023-09-25T22:45:40,487 src/ViennaRNA/alipfold.c:155:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:40,488 155 | for (n_seq = 0; n_seq < backward_compat_compound->n_seq; n_seq++) 2023-09-25T22:45:40,489 | ^ 2023-09-25T22:45:40,489 src/ViennaRNA/alipfold.c:166:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:40,490 166 | for (n_seq = 0; n_seq < vc->n_seq; n_seq++) { 2023-09-25T22:45:40,491 | ^ 2023-09-25T22:45:40,492 src/ViennaRNA/alipfold.c:169:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:40,493 169 | for (i = 1; i <= vc->length; i++) 2023-09-25T22:45:40,494 | ^~ 2023-09-25T22:45:40,747 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/alphabet.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/alphabet.o -fopenmp 2023-09-25T22:45:41,456 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/boltzmann_sampling.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/boltzmann_sampling.o -fopenmp 2023-09-25T22:45:41,726 In file included from src/ViennaRNA/boltzmann_sampling.c:29: 2023-09-25T22:45:41,727 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-09-25T22:45:41,728 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:41,728 224 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:45:41,729 | ^ 2023-09-25T22:45:41,729 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-09-25T22:45:41,730 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:41,731 265 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:45:41,731 | ^ 2023-09-25T22:45:41,732 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-09-25T22:45:41,733 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:41,733 320 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:45:41,734 | ^ 2023-09-25T22:45:41,735 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-09-25T22:45:41,736 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:41,736 385 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:45:41,737 | ^ 2023-09-25T22:45:41,737 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-09-25T22:45:41,738 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:41,739 414 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:45:41,740 | ^ 2023-09-25T22:45:41,740 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-09-25T22:45:41,741 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:41,742 463 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:45:41,742 | ^ 2023-09-25T22:45:41,743 In file included from src/ViennaRNA/boltzmann_sampling.c:30: 2023-09-25T22:45:41,744 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-09-25T22:45:41,744 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:41,745 73 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:45:41,745 | ^ 2023-09-25T22:45:41,746 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-09-25T22:45:41,746 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:41,747 112 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:45:41,747 | ^ 2023-09-25T22:45:41,748 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-09-25T22:45:41,748 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:41,749 143 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:45:41,749 | ^ 2023-09-25T22:45:41,750 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-09-25T22:45:41,750 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:41,751 185 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:45:41,751 | ^ 2023-09-25T22:45:41,752 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-09-25T22:45:41,752 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:41,753 224 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:45:41,754 | ^ 2023-09-25T22:45:41,755 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-09-25T22:45:41,755 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:41,756 730 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:45:41,757 | ^ 2023-09-25T22:45:41,757 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-09-25T22:45:41,758 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:41,759 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T22:45:41,759 | ^~ 2023-09-25T22:45:41,760 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-09-25T22:45:41,760 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:41,761 784 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:45:41,762 | ^ 2023-09-25T22:45:41,762 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-09-25T22:45:41,763 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:41,764 825 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:45:41,764 | ^ 2023-09-25T22:45:41,777 In file included from src/ViennaRNA/boltzmann_sampling.c:33: 2023-09-25T22:45:41,778 src/ViennaRNA/data_structures_nonred.inc: In function ‘free_all_nrll’: 2023-09-25T22:45:41,779 src/ViennaRNA/data_structures_nonred.inc:1153:7: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T22:45:41,779 1153 | int i; 2023-09-25T22:45:41,780 | ^ 2023-09-25T22:45:45,581 src/ViennaRNA/boltzmann_sampling.c: In function ‘backtrack’: 2023-09-25T22:45:45,632 src/ViennaRNA/boltzmann_sampling.c:1306:25: warning: ‘type’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:45,632 1306 | q_temp *= exp_E_IntLoop(u1, 2023-09-25T22:45:45,871 | ^~~~~~~~~~~~~~~~~ 2023-09-25T22:45:45,984 1307 | u2, 2023-09-25T22:45:46,095 | ~~~ 2023-09-25T22:45:46,151 1308 | type, 2023-09-25T22:45:46,152 | ~~~~~ 2023-09-25T22:45:46,154 1309 | type_2, 2023-09-25T22:45:46,293 | ~~~~~~~ 2023-09-25T22:45:46,319 1310 | S1[i + 1], 2023-09-25T22:45:46,320 | ~~~~~~~~~~ 2023-09-25T22:45:46,423 1311 | S1[j - 1], 2023-09-25T22:45:46,471 | ~~~~~~~~~~ 2023-09-25T22:45:46,477 1312 | S1[k - 1], 2023-09-25T22:45:46,496 | ~~~~~~~~~~ 2023-09-25T22:45:46,607 1313 | S1[l + 1], 2023-09-25T22:45:46,611 | ~~~~~~~~~~ 2023-09-25T22:45:46,665 1314 | pf_params); 2023-09-25T22:45:46,666 | ~~~~~~~~~~ 2023-09-25T22:45:46,717 src/ViennaRNA/boltzmann_sampling.c:1125:45: note: ‘type’ was declared here 2023-09-25T22:45:46,789 1125 | unsigned int **a2s, s, n_seq, n, type, type_2, *types, u1_local, u2_local; 2023-09-25T22:45:46,804 | ^~~~ 2023-09-25T22:45:47,165 In function ‘pbacktrack_circ’, 2023-09-25T22:45:47,197 inlined from ‘vrna_pbacktrack_sub_resume_cb’ at src/ViennaRNA/boltzmann_sampling.c:258:11: 2023-09-25T22:45:47,286 src/ViennaRNA/boltzmann_sampling.c:1659:32: warning: ‘type’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:47,287 1659 | q_temp *= exp_E_IntLoop(ln2 + ln3, 2023-09-25T22:45:47,462 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:45:47,524 1660 | ln1, 2023-09-25T22:45:47,765 | ~~~~ 2023-09-25T22:45:47,818 1661 | type2, 2023-09-25T22:45:47,819 | ~~~~~~ 2023-09-25T22:45:47,820 1662 | type, 2023-09-25T22:45:47,822 | ~~~~~ 2023-09-25T22:45:47,823 1663 | S1[l + 1], 2023-09-25T22:45:47,823 | ~~~~~~~~~~ 2023-09-25T22:45:47,824 1664 | S1[k - 1], 2023-09-25T22:45:47,825 | ~~~~~~~~~~ 2023-09-25T22:45:47,826 1665 | S1[i - 1], 2023-09-25T22:45:47,827 | ~~~~~~~~~~ 2023-09-25T22:45:47,828 1666 | S1[j + 1], 2023-09-25T22:45:47,829 | ~~~~~~~~~~ 2023-09-25T22:45:47,830 1667 | pf_params); 2023-09-25T22:45:47,831 | ~~~~~~~~~~ 2023-09-25T22:45:47,832 src/ViennaRNA/boltzmann_sampling.c: In function ‘vrna_pbacktrack_sub_resume_cb’: 2023-09-25T22:45:47,832 src/ViennaRNA/boltzmann_sampling.c:1524:25: note: ‘type’ was declared here 2023-09-25T22:45:47,833 1524 | unsigned int type, type2, *tt, s, n_seq, **a2s, u1_local, 2023-09-25T22:45:47,834 | ^~~~ 2023-09-25T22:45:48,129 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/bs_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/bs_wrappers.o -fopenmp 2023-09-25T22:45:48,508 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/c_plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/c_plex.o -fopenmp 2023-09-25T22:45:48,775 src/ViennaRNA/c_plex.c: In function ‘duplexfold_CXS’: 2023-09-25T22:45:48,776 src/ViennaRNA/c_plex.c:358:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:45:48,777 358 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2023-09-25T22:45:48,777 | ^~~~~~~ 2023-09-25T22:45:48,809 src/ViennaRNA/c_plex.c: In function ‘find_max_CXS’: 2023-09-25T22:45:48,810 src/ViennaRNA/c_plex.c:942:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:45:48,811 942 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-09-25T22:45:48,811 | ^~ 2023-09-25T22:45:48,812 src/ViennaRNA/c_plex.c: In function ‘plot_max_CXS’: 2023-09-25T22:45:48,813 src/ViennaRNA/c_plex.c:993:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:45:48,814 993 | if (dL <= strlen(test.structure) - l1 - 1) 2023-09-25T22:45:48,815 | ^~ 2023-09-25T22:45:48,820 src/ViennaRNA/c_plex.c: In function ‘duplexfold_C’: 2023-09-25T22:45:48,821 src/ViennaRNA/c_plex.c:1014:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:45:48,822 1014 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T22:45:48,823 | ^~ 2023-09-25T22:45:48,847 src/ViennaRNA/c_plex.c: In function ‘find_max_C’: 2023-09-25T22:45:48,848 src/ViennaRNA/c_plex.c:1622:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:45:48,849 1622 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-09-25T22:45:48,850 | ^~ 2023-09-25T22:45:48,850 src/ViennaRNA/c_plex.c: In function ‘plot_max_C’: 2023-09-25T22:45:48,852 src/ViennaRNA/c_plex.c:1676:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:45:48,852 1676 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-09-25T22:45:48,853 | ^~ 2023-09-25T22:45:51,317 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2023-09-25T22:45:51,318 src/ViennaRNA/c_plex.c:978:73: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:51,318 978 | int end_q = MIN2(n2 - 9, max_pos_j + alignment_length - 2); 2023-09-25T22:45:51,321 | ^ 2023-09-25T22:45:51,322 src/ViennaRNA/c_plex.c:533:13: note: ‘max_pos_j’ was declared here 2023-09-25T22:45:51,322 533 | int max_pos_j; 2023-09-25T22:45:51,323 | ^~~~~~~~~ 2023-09-25T22:45:51,324 In function ‘plot_max_CXS’, 2023-09-25T22:45:51,324 inlined from ‘Lduplexfold_CXS’ at src/ViennaRNA/c_plex.c:825:5: 2023-09-25T22:45:51,325 src/ViennaRNA/c_plex.c:972:5: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:51,325 972 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", max_pos - 3, max_pos_j, 2023-09-25T22:45:51,326 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:45:51,327 973 | ((double)max) / 100); 2023-09-25T22:45:51,327 | ~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:45:51,328 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2023-09-25T22:45:51,329 src/ViennaRNA/c_plex.c:532:13: note: ‘max_pos’ was declared here 2023-09-25T22:45:51,329 532 | int max_pos; /* get position of the best hit */ 2023-09-25T22:45:51,330 | ^~~~~~~ 2023-09-25T22:45:51,331 src/ViennaRNA/c_plex.c:801:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:51,331 801 | position_j[i + delta] = min_j_colonne; 2023-09-25T22:45:51,332 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T22:45:51,333 src/ViennaRNA/c_plex.c:535:13: note: ‘min_j_colonne’ was declared here 2023-09-25T22:45:51,333 535 | int min_j_colonne; 2023-09-25T22:45:51,334 | ^~~~~~~~~~~~~ 2023-09-25T22:45:52,705 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_C’: 2023-09-25T22:45:52,769 src/ViennaRNA/c_plex.c:1659:69: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:45:52,940 1659 | int begin_t = MAX2(11, max_pos - alignment_length + 1); 2023-09-25T22:45:52,958 | ^ 2023-09-25T22:45:52,984 src/ViennaRNA/c_plex.c:1271:7: note: ‘max_pos’ was declared here 2023-09-25T22:45:52,987 1271 | int max_pos; /* get position of the best hit */ 2023-09-25T22:45:53,124 | ^~~~~~~ 2023-09-25T22:45:53,677 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/centroid.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/centroid.o -fopenmp 2023-09-25T22:45:54,180 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/cofold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/cofold.o -fopenmp 2023-09-25T22:45:54,567 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/combinatorics.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/combinatorics.o -fopenmp 2023-09-25T22:45:54,718 src/ViennaRNA/combinatorics.c: In function ‘sawada_fast’: 2023-09-25T22:45:54,719 src/ViennaRNA/combinatorics.c:727:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:54,720 727 | if (content[k - 1].count == n - t + 1) { 2023-09-25T22:45:54,721 | ^~ 2023-09-25T22:45:54,722 src/ViennaRNA/combinatorics.c:728:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:54,722 728 | if ((content[k - 1].count == r[t - p]) && (n % p == 0)) 2023-09-25T22:45:54,723 | ^~ 2023-09-25T22:45:54,723 src/ViennaRNA/combinatorics.c:730:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:54,724 730 | else if (content[k - 1].count > r[t - p]) 2023-09-25T22:45:54,725 | ^ 2023-09-25T22:45:54,725 src/ViennaRNA/combinatorics.c:732:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:54,726 732 | } else if (content[0].count != (n - t + 1)) { 2023-09-25T22:45:54,727 | ^~ 2023-09-25T22:45:55,370 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/commands.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/commands.o -fopenmp 2023-09-25T22:45:55,590 src/ViennaRNA/commands.c: In function ‘parse_constraints_line’: 2023-09-25T22:45:55,591 src/ViennaRNA/commands.c:822:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:45:55,592 822 | if (pp == strlen(buf)) { 2023-09-25T22:45:55,592 | ^~ 2023-09-25T22:45:55,593 src/ViennaRNA/commands.c:830:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:45:55,593 830 | if (pp == strlen(buf)) { 2023-09-25T22:45:55,594 | ^~ 2023-09-25T22:45:55,595 src/ViennaRNA/commands.c:840:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:45:55,595 840 | if (pp == strlen(buf)) { 2023-09-25T22:45:55,596 | ^~ 2023-09-25T22:45:55,596 src/ViennaRNA/commands.c:851:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:45:55,597 851 | if (pp == strlen(buf)) { 2023-09-25T22:45:55,598 | ^~ 2023-09-25T22:45:55,599 src/ViennaRNA/commands.c:857:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:45:55,600 857 | if (pp == strlen(buf)) { 2023-09-25T22:45:55,601 | ^~ 2023-09-25T22:45:55,602 src/ViennaRNA/commands.c:869:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:45:55,602 869 | if (pp == strlen(buf)) { 2023-09-25T22:45:55,603 | ^~ 2023-09-25T22:45:55,604 src/ViennaRNA/commands.c:886:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:45:55,604 886 | if (pp == strlen(buf)) { 2023-09-25T22:45:55,605 | ^~ 2023-09-25T22:45:55,606 src/ViennaRNA/commands.c:895:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:45:55,607 895 | if (pp == strlen(buf)) { 2023-09-25T22:45:55,607 | ^~ 2023-09-25T22:45:56,288 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/concentrations.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/concentrations.o -fopenmp 2023-09-25T22:45:56,503 src/ViennaRNA/concentrations.c:229:1: warning: ‘conc_complexes’ defined but not used [-Wunused-function] 2023-09-25T22:45:56,504 229 | conc_complexes(double *L, 2023-09-25T22:45:56,504 | ^~~~~~~~~~~~~~ 2023-09-25T22:45:56,659 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/SHAPE.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/SHAPE.o -fopenmp 2023-09-25T22:45:56,881 src/ViennaRNA/constraints/SHAPE.c: In function ‘vrna_sc_add_SHAPE_deigan’: 2023-09-25T22:45:56,881 src/ViennaRNA/constraints/SHAPE.c:327:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:56,882 327 | for (i = 1; i <= vc->length; ++i) 2023-09-25T22:45:56,883 | ^~ 2023-09-25T22:45:56,884 src/ViennaRNA/constraints/SHAPE.c: In function ‘vrna_sc_add_SHAPE_deigan_ali’: 2023-09-25T22:45:56,884 src/ViennaRNA/constraints/SHAPE.c:410:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:56,885 410 | for (i = 1; i <= vc->length; i++) 2023-09-25T22:45:56,886 | ^~ 2023-09-25T22:45:56,887 src/ViennaRNA/constraints/SHAPE.c:418:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:56,887 418 | } else if (position > vc->length) { 2023-09-25T22:45:56,888 | ^ 2023-09-25T22:45:56,889 src/ViennaRNA/constraints/SHAPE.c:456:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:56,890 456 | for (gaps = 0, i = 1; i <= vc->length; i++) { 2023-09-25T22:45:56,890 | ^~ 2023-09-25T22:45:57,507 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/constraints.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/constraints.o -fopenmp 2023-09-25T22:45:57,762 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/hard.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/hard.o -fopenmp 2023-09-25T22:45:57,984 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_up’: 2023-09-25T22:45:57,985 src/ViennaRNA/constraints/hard.c:303:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:57,986 303 | if ((i <= 0) || (i > fc->length)) { 2023-09-25T22:45:57,986 | ^ 2023-09-25T22:45:57,987 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_up_batch’: 2023-09-25T22:45:57,987 src/ViennaRNA/constraints/hard.c:375:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:57,988 375 | if ((pos <= 0) || (pos > fc->length)) 2023-09-25T22:45:57,988 | ^ 2023-09-25T22:45:57,989 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp_nonspecific’: 2023-09-25T22:45:57,989 src/ViennaRNA/constraints/hard.c:455:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:57,990 455 | if ((i <= 0) || (i > vc->length)) { 2023-09-25T22:45:57,990 | ^ 2023-09-25T22:45:57,991 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp_strand’: 2023-09-25T22:45:57,991 src/ViennaRNA/constraints/hard.c:513:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:57,992 513 | ((j - i - 1) < turn)) 2023-09-25T22:45:57,992 | ^ 2023-09-25T22:45:57,993 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp’: 2023-09-25T22:45:57,993 src/ViennaRNA/constraints/hard.c:549:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:57,994 549 | if ((i <= 0) || (j <= i) || (j > vc->length)) { 2023-09-25T22:45:57,995 | ^ 2023-09-25T22:45:57,995 src/ViennaRNA/constraints/hard.c: In function ‘default_pair_constraint’: 2023-09-25T22:45:57,996 src/ViennaRNA/constraints/hard.c:727:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:57,997 727 | (j < fc->length) && 2023-09-25T22:45:57,997 | ^ 2023-09-25T22:45:57,998 src/ViennaRNA/constraints/hard.c:760:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:57,999 760 | (j < fc->length) && 2023-09-25T22:45:57,999 | ^ 2023-09-25T22:45:58,017 src/ViennaRNA/constraints/hard.c: In function ‘populate_hc_bp’: 2023-09-25T22:45:58,018 src/ViennaRNA/constraints/hard.c:1076:51: warning: variable ‘turn’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:45:58,019 1076 | unsigned int max_span, maxdist, j, k, p, n, l, turn, strand, sj, sl, actual_i, actual_j, 2023-09-25T22:45:58,019 | ^~~~ 2023-09-25T22:45:58,023 In file included from src/ViennaRNA/constraints/hard.c:18: 2023-09-25T22:45:58,024 src/ViennaRNA/constraints/hard.c: In function ‘apply_DB_constraint’: 2023-09-25T22:45:58,025 src/ViennaRNA/utils/basic.h:111:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:58,025 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-09-25T22:45:58,026 | ^ 2023-09-25T22:45:58,027 src/ViennaRNA/constraints/hard.c:1656:24: note: in expansion of macro ‘MAX2’ 2023-09-25T22:45:58,027 1656 | for (l = MAX2(j + min_loop_size, cut); l <= length; l++) { 2023-09-25T22:45:58,028 | ^~~~ 2023-09-25T22:45:58,029 src/ViennaRNA/utils/basic.h:111:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:58,029 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-09-25T22:45:58,030 | ^~~ 2023-09-25T22:45:58,031 src/ViennaRNA/constraints/hard.c:1656:24: note: in expansion of macro ‘MAX2’ 2023-09-25T22:45:58,032 1656 | for (l = MAX2(j + min_loop_size, cut); l <= length; l++) { 2023-09-25T22:45:58,032 | ^~~~ 2023-09-25T22:45:58,033 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:58,033 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:58,034 | ^ 2023-09-25T22:45:58,034 src/ViennaRNA/constraints/hard.c:1670:31: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:58,035 1670 | for (l = 1; l < MIN2(cut, j - min_loop_size); l++) { 2023-09-25T22:45:58,035 | ^~~~ 2023-09-25T22:45:58,036 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:58,036 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:58,037 | ^~~ 2023-09-25T22:45:58,038 src/ViennaRNA/constraints/hard.c:1670:31: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:58,038 1670 | for (l = 1; l < MIN2(cut, j - min_loop_size); l++) { 2023-09-25T22:45:58,039 | ^~~~ 2023-09-25T22:45:58,039 src/ViennaRNA/constraints/hard.c:1695:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:58,040 1695 | for (l = 1; l < j; l++) { 2023-09-25T22:45:58,041 | ^ 2023-09-25T22:45:58,042 src/ViennaRNA/constraints/hard.c:1709:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:58,042 1709 | for (l = j + 1; l < cut; l++) { 2023-09-25T22:45:58,043 | ^ 2023-09-25T22:45:58,044 src/ViennaRNA/constraints/hard.c:1723:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:58,045 1723 | for (l = cut; l < j; l++) { 2023-09-25T22:45:58,045 | ^ 2023-09-25T22:45:58,046 src/ViennaRNA/constraints/hard.c:1779:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:58,047 1779 | for (i = 0; i < num_bp_unspecific; i++) 2023-09-25T22:45:58,047 | ^ 2023-09-25T22:45:58,048 src/ViennaRNA/constraints/hard.c:1786:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:45:58,049 1786 | for (i = 0; i < num_bp; i++) 2023-09-25T22:45:58,050 | ^ 2023-09-25T22:45:58,053 src/ViennaRNA/constraints/hard.c: In function ‘hc_update_up’: 2023-09-25T22:45:58,056 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:58,056 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:58,057 | ^ 2023-09-25T22:45:58,058 src/ViennaRNA/constraints/hard.c:1873:29: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:58,059 1873 | hc->up_ext[i] = MIN2(n, 1 + hc->up_ext[i + 1]); 2023-09-25T22:45:58,059 | ^~~~ 2023-09-25T22:45:58,060 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:58,061 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:58,062 | ^~~ 2023-09-25T22:45:58,062 src/ViennaRNA/constraints/hard.c:1873:29: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:58,063 1873 | hc->up_ext[i] = MIN2(n, 1 + hc->up_ext[i + 1]); 2023-09-25T22:45:58,063 | ^~~~ 2023-09-25T22:45:58,064 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:58,064 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:58,065 | ^ 2023-09-25T22:45:58,066 src/ViennaRNA/constraints/hard.c:1883:28: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:58,066 1883 | hc->up_hp[i] = MIN2(n, 1 + hc->up_hp[i + 1]); 2023-09-25T22:45:58,067 | ^~~~ 2023-09-25T22:45:58,067 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:58,068 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:58,068 | ^~~ 2023-09-25T22:45:58,069 src/ViennaRNA/constraints/hard.c:1883:28: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:58,070 1883 | hc->up_hp[i] = MIN2(n, 1 + hc->up_hp[i + 1]); 2023-09-25T22:45:58,070 | ^~~~ 2023-09-25T22:45:58,071 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:58,072 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:58,073 | ^ 2023-09-25T22:45:58,073 src/ViennaRNA/constraints/hard.c:1893:29: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:58,074 1893 | hc->up_int[i] = MIN2(n, 1 + hc->up_int[i + 1]); 2023-09-25T22:45:58,075 | ^~~~ 2023-09-25T22:45:58,075 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:58,076 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:58,077 | ^~~ 2023-09-25T22:45:58,078 src/ViennaRNA/constraints/hard.c:1893:29: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:58,078 1893 | hc->up_int[i] = MIN2(n, 1 + hc->up_int[i + 1]); 2023-09-25T22:45:58,079 | ^~~~ 2023-09-25T22:45:58,080 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:45:58,081 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:58,081 | ^ 2023-09-25T22:45:58,082 src/ViennaRNA/constraints/hard.c:1903:28: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:58,083 1903 | hc->up_ml[i] = MIN2(n, 1 + hc->up_ml[i + 1]); 2023-09-25T22:45:58,083 | ^~~~ 2023-09-25T22:45:58,084 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:45:58,085 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:45:58,086 | ^~~ 2023-09-25T22:45:58,087 src/ViennaRNA/constraints/hard.c:1903:28: note: in expansion of macro ‘MIN2’ 2023-09-25T22:45:58,087 1903 | hc->up_ml[i] = MIN2(n, 1 + hc->up_ml[i + 1]); 2023-09-25T22:45:58,088 | ^~~~ 2023-09-25T22:46:01,015 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/ligand.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/ligand.o -fopenmp 2023-09-25T22:46:01,977 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod.o -fopenmp 2023-09-25T22:46:02,155 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘vrna_sc_mod’: 2023-09-25T22:46:02,156 src/ViennaRNA/constraints/sc_cb_mod.c:479:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:02,157 479 | ((msite - j - 1) >= md->min_loop_size)) { 2023-09-25T22:46:02,157 | ^~ 2023-09-25T22:46:02,158 src/ViennaRNA/constraints/sc_cb_mod.c:482:42: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:02,158 482 | if (fc->sequence_encoding[j] == pp_enc) { 2023-09-25T22:46:02,159 | ^~ 2023-09-25T22:46:02,159 src/ViennaRNA/constraints/sc_cb_mod.c:493:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:02,160 493 | ((j - msite - 1) >= md->min_loop_size)) { 2023-09-25T22:46:02,161 | ^~ 2023-09-25T22:46:02,162 src/ViennaRNA/constraints/sc_cb_mod.c:496:42: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:02,162 496 | if (fc->sequence_encoding[j] == pp_enc) { 2023-09-25T22:46:02,163 | ^~ 2023-09-25T22:46:02,164 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_stacks’: 2023-09-25T22:46:02,164 src/ViennaRNA/constraints/sc_cb_mod.c:761:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:46:02,165 761 | char nt[MAX_ALPHABET] = { 2023-09-25T22:46:02,166 | ^~ 2023-09-25T22:46:02,167 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_mismatches’: 2023-09-25T22:46:02,168 src/ViennaRNA/constraints/sc_cb_mod.c:856:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:46:02,168 856 | char nt[MAX_ALPHABET] = { 2023-09-25T22:46:02,169 | ^~ 2023-09-25T22:46:02,171 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_dangles’: 2023-09-25T22:46:02,172 src/ViennaRNA/constraints/sc_cb_mod.c:985:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:46:02,172 985 | char nt[MAX_ALPHABET] = { 2023-09-25T22:46:02,173 | ^~ 2023-09-25T22:46:02,174 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_terminal’: 2023-09-25T22:46:02,175 src/ViennaRNA/constraints/sc_cb_mod.c:1149:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:46:02,175 1149 | char nt[MAX_ALPHABET] = { 2023-09-25T22:46:02,176 | ^~ 2023-09-25T22:46:04,576 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod_parser.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod_parser.o -fopenmp 2023-09-25T22:46:05,277 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod_wrappers.o -fopenmp 2023-09-25T22:46:15,509 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/soft.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/soft.o -fopenmp 2023-09-25T22:46:15,721 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_bp’: 2023-09-25T22:46:15,722 src/ViennaRNA/constraints/soft.c:401:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:15,722 401 | (i > fc->length) || 2023-09-25T22:46:15,723 | ^ 2023-09-25T22:46:15,723 src/ViennaRNA/constraints/soft.c:403:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:15,724 403 | (j > fc->length)) { 2023-09-25T22:46:15,725 | ^ 2023-09-25T22:46:15,725 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_up’: 2023-09-25T22:46:15,726 src/ViennaRNA/constraints/soft.c:452:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:15,727 452 | if ((i < 1) || (i > fc->length)) { 2023-09-25T22:46:15,727 | ^ 2023-09-25T22:46:15,730 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_stack’: 2023-09-25T22:46:15,730 src/ViennaRNA/constraints/soft.c:547:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:15,731 547 | if ((i < 1) || (i > fc->length)) { 2023-09-25T22:46:15,732 | ^ 2023-09-25T22:46:15,732 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_stack_comparative’: 2023-09-25T22:46:15,733 src/ViennaRNA/constraints/soft.c:582:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:15,734 582 | if ((i < 1) || (i > fc->length)) { 2023-09-25T22:46:15,734 | ^ 2023-09-25T22:46:15,751 src/ViennaRNA/constraints/soft.c: In function ‘prepare_sc_stack_pf’: 2023-09-25T22:46:15,753 src/ViennaRNA/constraints/soft.c:1416:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:15,753 1416 | for (i = 0; i <= fc->length; ++i) 2023-09-25T22:46:15,754 | ^~ 2023-09-25T22:46:15,755 src/ViennaRNA/constraints/soft.c:1420:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:15,755 1420 | for (i = 1; i <= fc->length; ++i) 2023-09-25T22:46:15,756 | ^~ 2023-09-25T22:46:15,757 src/ViennaRNA/constraints/soft.c:1436:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:15,757 1436 | for (i = 0; i <= fc->a2s[s][fc->length]; i++) 2023-09-25T22:46:15,758 | ^~ 2023-09-25T22:46:15,758 src/ViennaRNA/constraints/soft.c:1440:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:15,759 1440 | for (i = 1; i <= fc->a2s[s][fc->length]; ++i) 2023-09-25T22:46:15,759 | ^~ 2023-09-25T22:46:17,254 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/soft_cb_multi.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/soft_cb_multi.o -fopenmp 2023-09-25T22:46:17,742 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/array.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/array.o -fopenmp 2023-09-25T22:46:17,917 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/basic_datastructures.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/basic_datastructures.o -fopenmp 2023-09-25T22:46:18,062 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/char_stream.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/char_stream.o -fopenmp 2023-09-25T22:46:18,241 src/ViennaRNA/datastructures/char_stream.c: In function ‘vrna_cstr_vprintf’: 2023-09-25T22:46:18,241 src/ViennaRNA/datastructures/char_stream.c:195:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:18,242 195 | if ((size_new > 0) && (l1 < SIZE_MAX) && ((SIZE_MAX - l1) > l2)) { 2023-09-25T22:46:18,243 | ^ 2023-09-25T22:46:18,244 src/ViennaRNA/datastructures/char_stream.c:195:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:18,244 195 | if ((size_new > 0) && (l1 < SIZE_MAX) && ((SIZE_MAX - l1) > l2)) { 2023-09-25T22:46:18,245 | ^ 2023-09-25T22:46:18,714 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/hash_tables.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/hash_tables.o -fopenmp 2023-09-25T22:46:18,874 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_get’: 2023-09-25T22:46:18,874 src/ViennaRNA/datastructures/hash_tables.c:126:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T22:46:18,875 126 | for (i = 0; i < entries->length; i++) { 2023-09-25T22:46:18,876 | ^ 2023-09-25T22:46:18,876 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_insert’: 2023-09-25T22:46:18,877 src/ViennaRNA/datastructures/hash_tables.c:157:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T22:46:18,878 157 | for (i = 0; i < entries->length; i++) { 2023-09-25T22:46:18,878 | ^ 2023-09-25T22:46:18,879 src/ViennaRNA/datastructures/hash_tables.c:165:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T22:46:18,879 165 | if (i >= entries->length) { 2023-09-25T22:46:18,880 | ^~ 2023-09-25T22:46:18,880 src/ViennaRNA/datastructures/hash_tables.c:166:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T22:46:18,880 166 | if (i >= entries->allocated_length) { 2023-09-25T22:46:18,881 | ^~ 2023-09-25T22:46:18,881 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_clear’: 2023-09-25T22:46:18,882 src/ViennaRNA/datastructures/hash_tables.c:204:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T22:46:18,883 204 | for (i = 0; i < entries->length; i++) { 2023-09-25T22:46:18,884 | ^ 2023-09-25T22:46:18,885 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_remove’: 2023-09-25T22:46:18,885 src/ViennaRNA/datastructures/hash_tables.c:249:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T22:46:18,886 249 | for (i = 0; i < entries->length; i++) { 2023-09-25T22:46:18,886 | ^ 2023-09-25T22:46:18,887 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_db_hash_func’: 2023-09-25T22:46:18,888 src/ViennaRNA/datastructures/hash_tables.c:339:7: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign] 2023-09-25T22:46:18,888 339 | k = ((vrna_ht_entry_db_t *)x)->structure; 2023-09-25T22:46:18,889 | ^ 2023-09-25T22:46:18,889 src/ViennaRNA/datastructures/hash_tables.c:340:39: warning: pointer targets in passing argument 1 of ‘strlen’ differ in signedness [-Wpointer-sign] 2023-09-25T22:46:18,890 340 | len = length = (unsigned int)strlen(k); 2023-09-25T22:46:18,891 | ^ 2023-09-25T22:46:18,891 | | 2023-09-25T22:46:18,892 | unsigned char * 2023-09-25T22:46:18,892 In file included from src/ViennaRNA/datastructures/hash_tables.c:6: 2023-09-25T22:46:18,893 /usr/include/string.h:407:35: note: expected ‘const char *’ but argument is of type ‘unsigned char *’ 2023-09-25T22:46:18,894 407 | extern size_t strlen (const char *__s) 2023-09-25T22:46:18,894 | ~~~~~~~~~~~~^~~ 2023-09-25T22:46:19,212 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/heap.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/heap.o -fopenmp 2023-09-25T22:46:19,696 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/lists.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/lists.o -fopenmp 2023-09-25T22:46:19,988 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/stream_output.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/stream_output.o -fopenmp 2023-09-25T22:46:20,312 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/string.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/string.o -fopenmp 2023-09-25T22:46:20,439 src/ViennaRNA/datastructures/string.c: In function ‘vrna_string_make_space_for’: 2023-09-25T22:46:20,439 src/ViennaRNA/datastructures/string.c:91:21: warning: variable ‘old_size’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:46:20,441 91 | size_t available, old_size, new_size; 2023-09-25T22:46:20,441 | ^~~~~~~~ 2023-09-25T22:46:20,554 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/dist_vars.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/dist_vars.o -fopenmp 2023-09-25T22:46:20,610 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/dp_matrices.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/dp_matrices.o -fopenmp 2023-09-25T22:46:22,578 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/duplex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/duplex.o -fopenmp 2023-09-25T22:46:22,848 src/ViennaRNA/duplex.c: In function ‘aliduplexfold_cu’: 2023-09-25T22:46:22,849 src/ViennaRNA/duplex.c:435:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:46:22,849 435 | if (strlen(s1[s]) != n1) 2023-09-25T22:46:22,850 | ^~ 2023-09-25T22:46:22,851 src/ViennaRNA/duplex.c:438:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:46:22,851 438 | if (strlen(s2[s]) != n2) 2023-09-25T22:46:22,852 | ^~ 2023-09-25T22:46:22,854 src/ViennaRNA/duplex.c: In function ‘aliduplex_subopt’: 2023-09-25T22:46:22,854 src/ViennaRNA/duplex.c:556:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:46:22,855 556 | if (strlen(s1[s]) != n1) 2023-09-25T22:46:22,856 | ^~ 2023-09-25T22:46:22,856 src/ViennaRNA/duplex.c:559:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:46:22,857 559 | if (strlen(s2[s]) != n2) 2023-09-25T22:46:22,857 | ^~ 2023-09-25T22:46:25,249 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/equilibrium_probs.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/equilibrium_probs.o -fopenmp 2023-09-25T22:46:25,549 In file included from src/ViennaRNA/equilibrium_probs.c:37: 2023-09-25T22:46:25,550 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-09-25T22:46:25,550 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,551 224 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:46:25,551 | ^ 2023-09-25T22:46:25,552 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-09-25T22:46:25,553 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,553 265 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:25,554 | ^ 2023-09-25T22:46:25,555 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-09-25T22:46:25,556 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,556 320 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:25,557 | ^ 2023-09-25T22:46:25,558 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-09-25T22:46:25,559 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,559 385 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:46:25,560 | ^ 2023-09-25T22:46:25,561 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-09-25T22:46:25,561 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,562 414 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:25,562 | ^ 2023-09-25T22:46:25,563 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-09-25T22:46:25,564 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,564 463 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:25,565 | ^ 2023-09-25T22:46:25,574 In file included from src/ViennaRNA/equilibrium_probs.c:39: 2023-09-25T22:46:25,574 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-09-25T22:46:25,575 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,576 73 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:25,577 | ^ 2023-09-25T22:46:25,578 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-09-25T22:46:25,579 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,579 112 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:25,579 | ^ 2023-09-25T22:46:25,580 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-09-25T22:46:25,581 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,581 143 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:25,581 | ^ 2023-09-25T22:46:25,582 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-09-25T22:46:25,582 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,583 185 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:25,583 | ^ 2023-09-25T22:46:25,584 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-09-25T22:46:25,584 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,585 224 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:25,586 | ^ 2023-09-25T22:46:25,588 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-09-25T22:46:25,589 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,589 730 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:25,590 | ^ 2023-09-25T22:46:25,591 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-09-25T22:46:25,591 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:25,592 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T22:46:25,593 | ^~ 2023-09-25T22:46:25,593 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-09-25T22:46:25,594 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,595 784 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:25,595 | ^ 2023-09-25T22:46:25,596 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-09-25T22:46:25,596 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,597 825 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:25,598 | ^ 2023-09-25T22:46:25,619 src/ViennaRNA/equilibrium_probs.c: In function ‘vrna_ensemble_defect_pt’: 2023-09-25T22:46:25,620 src/ViennaRNA/equilibrium_probs.c:406:14: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:25,620 406 | (pt[0] == fc->length) && 2023-09-25T22:46:25,621 | ^~ 2023-09-25T22:46:25,622 src/ViennaRNA/equilibrium_probs.c:428:22: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:25,623 428 | else if (pt[i] > i) 2023-09-25T22:46:25,623 | ^ 2023-09-25T22:46:25,632 src/ViennaRNA/equilibrium_probs.c: In function ‘get_ml_helper_arrays’: 2023-09-25T22:46:25,633 src/ViennaRNA/equilibrium_probs.c:958:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,634 958 | for (u = 0; u < domains_up->uniq_motif_count; u++) 2023-09-25T22:46:25,634 | ^ 2023-09-25T22:46:25,635 src/ViennaRNA/equilibrium_probs.c:959:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:25,635 959 | if (ml_helpers->ud_max_size < domains_up->uniq_motif_size[u]) 2023-09-25T22:46:25,635 | ^ 2023-09-25T22:46:25,636 src/ViennaRNA/equilibrium_probs.c:965:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,636 965 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-09-25T22:46:25,637 | ^~ 2023-09-25T22:46:25,637 src/ViennaRNA/equilibrium_probs.c:971:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,638 971 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-09-25T22:46:25,638 | ^~ 2023-09-25T22:46:25,639 src/ViennaRNA/equilibrium_probs.c: In function ‘free_ml_helper_arrays’: 2023-09-25T22:46:25,639 src/ViennaRNA/equilibrium_probs.c:989:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,640 989 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-09-25T22:46:25,641 | ^~ 2023-09-25T22:46:25,642 src/ViennaRNA/equilibrium_probs.c: In function ‘rotate_ml_helper_arrays_outer’: 2023-09-25T22:46:25,642 src/ViennaRNA/equilibrium_probs.c:1019:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,643 1019 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-09-25T22:46:25,644 | ^~ 2023-09-25T22:46:25,679 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_update_Y5’: 2023-09-25T22:46:25,680 src/ViennaRNA/equilibrium_probs.c:2281:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,681 2281 | if ((se[s] < l) && 2023-09-25T22:46:25,682 | ^ 2023-09-25T22:46:25,686 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_update_Y3’: 2023-09-25T22:46:25,687 src/ViennaRNA/equilibrium_probs.c:2391:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,688 2391 | if (start == l + 1) { 2023-09-25T22:46:25,689 | ^~ 2023-09-25T22:46:25,692 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_contrib’: 2023-09-25T22:46:25,695 src/ViennaRNA/equilibrium_probs.c:2505:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,695 2505 | else if (start == l + 1) 2023-09-25T22:46:25,696 | ^~ 2023-09-25T22:46:25,697 src/ViennaRNA/equilibrium_probs.c:2507:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:25,698 2507 | else if ((start > l + 1) && 2023-09-25T22:46:25,698 | ^ 2023-09-25T22:46:25,701 src/ViennaRNA/equilibrium_probs.c:2475:27: warning: variable ‘sc_split’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:46:25,701 2475 | sc_ext_exp_split sc_split; 2023-09-25T22:46:25,702 | ^~~~~~~~ 2023-09-25T22:46:25,720 src/ViennaRNA/equilibrium_probs.c: In function ‘ud_outside_mb_loops’: 2023-09-25T22:46:25,723 src/ViennaRNA/equilibrium_probs.c:3147:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:25,723 3147 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-09-25T22:46:25,723 | ^ 2023-09-25T22:46:25,739 src/ViennaRNA/equilibrium_probs.c: In function ‘ud_outside_mb_loops2’: 2023-09-25T22:46:25,742 src/ViennaRNA/equilibrium_probs.c:3443:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:25,743 3443 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-09-25T22:46:25,743 | ^ 2023-09-25T22:46:37,073 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/eval.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval.o -fopenmp 2023-09-25T22:46:37,373 src/ViennaRNA/eval.c: In function ‘energy_of_extLoop_pt’: 2023-09-25T22:46:37,374 src/ViennaRNA/eval.c:653:34: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:37,374 653 | if ((pt[i] != 0) && (pt[i] > i)) { 2023-09-25T22:46:37,375 | ^ 2023-09-25T22:46:37,380 src/ViennaRNA/eval.c: In function ‘energy_of_ext_loop_components’: 2023-09-25T22:46:37,381 src/ViennaRNA/eval.c:919:19: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:37,382 919 | if (pt[i] > i) { 2023-09-25T22:46:37,383 | ^ 2023-09-25T22:46:37,395 src/ViennaRNA/eval.c: In function ‘energy_of_ml_pt’: 2023-09-25T22:46:37,396 src/ViennaRNA/eval.c:1673:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:37,397 1673 | for (ss = 0; ss < n_seq; ss++) 2023-09-25T22:46:37,398 | ^ 2023-09-25T22:46:37,399 src/ViennaRNA/eval.c:1711:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:37,399 1711 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T22:46:37,400 | ^ 2023-09-25T22:46:37,401 src/ViennaRNA/eval.c:1719:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:37,401 1719 | for (ss = 0; ss < n_seq; ss++) 2023-09-25T22:46:37,402 | ^ 2023-09-25T22:46:37,403 src/ViennaRNA/eval.c:1741:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:37,403 1741 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T22:46:37,404 | ^ 2023-09-25T22:46:37,405 src/ViennaRNA/eval.c:1756:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:37,406 1756 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T22:46:37,406 | ^ 2023-09-25T22:46:37,407 src/ViennaRNA/eval.c:1764:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:37,408 1764 | for (ss = 0; ss < n_seq; ss++) 2023-09-25T22:46:37,408 | ^ 2023-09-25T22:46:37,409 src/ViennaRNA/eval.c:1772:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:37,409 1772 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T22:46:37,410 | ^ 2023-09-25T22:46:37,411 src/ViennaRNA/eval.c:1824:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:37,411 1824 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T22:46:37,412 | ^ 2023-09-25T22:46:37,413 src/ViennaRNA/eval.c:1841:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:37,414 1841 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T22:46:37,414 | ^ 2023-09-25T22:46:37,415 src/ViennaRNA/eval.c:1849:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:37,416 1849 | for (ss = 0; ss < n_seq; ss++) 2023-09-25T22:46:37,416 | ^ 2023-09-25T22:46:37,417 src/ViennaRNA/eval.c:1856:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:37,417 1856 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T22:46:37,418 | ^ 2023-09-25T22:46:37,421 src/ViennaRNA/eval.c:1935:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:37,422 1935 | while (p <= (unsigned int)pt[0] && pt[p] == 0) 2023-09-25T22:46:37,422 | ^~ 2023-09-25T22:46:37,424 src/ViennaRNA/eval.c:1946:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:37,424 1946 | if (p == (unsigned int)pt[0] + 1) { 2023-09-25T22:46:37,425 | ^~ 2023-09-25T22:46:37,426 src/ViennaRNA/eval.c:1962:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:37,427 1962 | if ((sn[i1] == sn[i1 + 1]) && (i1 < (unsigned int)s[0])) 2023-09-25T22:46:37,427 | ^ 2023-09-25T22:46:37,429 src/ViennaRNA/eval.c:2010:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:37,430 2010 | if (i == (unsigned int)pt[p]) 2023-09-25T22:46:37,430 | ^~ 2023-09-25T22:46:40,764 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/eval_covariance.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval_covariance.o -fopenmp 2023-09-25T22:46:41,193 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/eval_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval_wrappers.o -fopenmp 2023-09-25T22:46:41,976 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/fold.o -fopenmp 2023-09-25T22:46:42,780 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/fold_compound.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/fold_compound.o -fopenmp 2023-09-25T22:46:43,080 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_free’: 2023-09-25T22:46:43,081 src/ViennaRNA/fold_compound.c:137:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:43,081 137 | for (s = 0; s < fc->n_seq; s++) { 2023-09-25T22:46:43,082 | ^ 2023-09-25T22:46:43,082 src/ViennaRNA/fold_compound.c:156:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:43,083 156 | for (s = 0; s < fc->n_seq; s++) 2023-09-25T22:46:43,083 | ^ 2023-09-25T22:46:43,085 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_comparative2’: 2023-09-25T22:46:43,085 src/ViennaRNA/fold_compound.c:311:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:43,086 311 | } else if (length > vrna_sequence_length_max(options)) { 2023-09-25T22:46:43,087 | ^ 2023-09-25T22:46:43,087 src/ViennaRNA/fold_compound.c:318:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:46:43,088 318 | if (strlen(sequences[s]) != length) { 2023-09-25T22:46:43,089 | ^~ 2023-09-25T22:46:43,090 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_TwoD’: 2023-09-25T22:46:43,090 src/ViennaRNA/fold_compound.c:417:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:43,091 417 | } else if (length > vrna_sequence_length_max(options)) { 2023-09-25T22:46:43,092 | ^ 2023-09-25T22:46:43,865 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/gquad.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/gquad.o -fopenmp 2023-09-25T22:46:44,116 In file included from src/ViennaRNA/gquad.c:21: 2023-09-25T22:46:44,117 src/ViennaRNA/gquad.c: In function ‘get_gquad_pf_matrix_comparative’: 2023-09-25T22:46:44,117 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:44,118 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:46:44,119 | ^ 2023-09-25T22:46:44,119 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-09-25T22:46:44,120 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T22:46:44,121 | ^~~~ 2023-09-25T22:46:44,122 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T22:46:44,122 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T22:46:44,123 | ^~~~~~~~~~~~~~ 2023-09-25T22:46:44,123 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:46:44,124 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:46:44,124 | ^~~ 2023-09-25T22:46:44,125 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-09-25T22:46:44,125 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T22:46:44,126 | ^~~~ 2023-09-25T22:46:44,126 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T22:46:44,127 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T22:46:44,127 | ^~~~~~~~~~~~~~ 2023-09-25T22:46:44,128 src/ViennaRNA/gquad.c:40:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:44,129 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T22:46:44,129 | ^~ 2023-09-25T22:46:44,130 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T22:46:44,130 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T22:46:44,131 | ^~~~~~~~~~~~~~ 2023-09-25T22:46:44,131 src/ViennaRNA/gquad.c: In function ‘get_gquad_ali_matrix’: 2023-09-25T22:46:44,132 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:44,132 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:46:44,133 | ^ 2023-09-25T22:46:44,134 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-09-25T22:46:44,134 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T22:46:44,135 | ^~~~ 2023-09-25T22:46:44,136 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T22:46:44,137 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T22:46:44,137 | ^~~~~~~~~~~~~~ 2023-09-25T22:46:44,138 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:46:44,139 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:46:44,139 | ^~~ 2023-09-25T22:46:44,140 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-09-25T22:46:44,141 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T22:46:44,141 | ^~~~ 2023-09-25T22:46:44,142 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T22:46:44,143 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T22:46:44,144 | ^~~~~~~~~~~~~~ 2023-09-25T22:46:44,144 src/ViennaRNA/gquad.c:40:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:44,145 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T22:46:44,145 | ^~ 2023-09-25T22:46:44,146 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T22:46:44,147 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T22:46:44,147 | ^~~~~~~~~~~~~~ 2023-09-25T22:46:44,148 src/ViennaRNA/gquad.c: In function ‘E_gquad_ali_penalty’: 2023-09-25T22:46:44,149 src/ViennaRNA/gquad.c:1338:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:44,149 1338 | if (mm[1] > P->gquadLayerMismatchMax) 2023-09-25T22:46:44,150 | ^ 2023-09-25T22:46:44,151 src/ViennaRNA/gquad.c: In function ‘exp_E_gquad_ali_penalty’: 2023-09-25T22:46:44,151 src/ViennaRNA/gquad.c:1357:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:44,152 1357 | if (mm[1] > pf->gquadLayerMismatchMax) 2023-09-25T22:46:44,152 | ^ 2023-09-25T22:46:44,152 src/ViennaRNA/gquad.c: In function ‘count_gquad_layer_mismatches’: 2023-09-25T22:46:44,153 src/ViennaRNA/gquad.c:1439:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:44,153 1439 | if (mismatch >= 2 * (L - 1)) 2023-09-25T22:46:44,154 | ^~ 2023-09-25T22:46:46,108 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/grammar.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/grammar.o -fopenmp 2023-09-25T22:46:46,409 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/heat_capacity.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/heat_capacity.o -fopenmp 2023-09-25T22:46:46,768 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/inverse.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/inverse.o -fopenmp 2023-09-25T22:46:47,017 src/ViennaRNA/inverse.c: In function ‘adaptive_walk’: 2023-09-25T22:46:47,018 src/ViennaRNA/inverse.c:114:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:46:47,019 114 | if (strlen(target) != len) 2023-09-25T22:46:47,019 | ^~ 2023-09-25T22:46:47,024 src/ViennaRNA/inverse.c: In function ‘make_ptable’: 2023-09-25T22:46:47,025 src/ViennaRNA/inverse.c:340:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:46:47,025 340 | for (i = 0; i < strlen(structure); i++) { 2023-09-25T22:46:47,026 | ^ 2023-09-25T22:46:47,027 src/ViennaRNA/inverse.c: In function ‘inverse_fold’: 2023-09-25T22:46:47,027 src/ViennaRNA/inverse.c:392:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:46:47,028 392 | if (strlen(start) != len) 2023-09-25T22:46:47,028 | ^~ 2023-09-25T22:46:47,031 src/ViennaRNA/inverse.c: In function ‘make_start’: 2023-09-25T22:46:47,032 src/ViennaRNA/inverse.c:514:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:46:47,032 514 | for (i = 0; i < strlen(start); i++) 2023-09-25T22:46:47,033 | ^ 2023-09-25T22:46:47,034 src/ViennaRNA/inverse.c:516:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:46:47,034 516 | for (i = 0; i < strlen(symbolset); i++) 2023-09-25T22:46:47,035 | ^ 2023-09-25T22:46:47,917 src/ViennaRNA/inverse.c: In function ‘inverse_fold’: 2023-09-25T22:46:47,917 src/ViennaRNA/inverse.c:369:5: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2023-09-25T22:46:47,918 369 | strncpy(wstruct, structure + i, j - i + 1); \ 2023-09-25T22:46:47,918 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:46:47,919 src/ViennaRNA/inverse.c:423:7: note: in expansion of macro ‘WALK’ 2023-09-25T22:46:47,919 423 | WALK(0, len - 1); 2023-09-25T22:46:47,920 | ^~~~ 2023-09-25T22:46:47,920 src/ViennaRNA/inverse.c:391:9: note: length computed here 2023-09-25T22:46:47,921 391 | len = strlen(structure); 2023-09-25T22:46:47,921 | ^~~~~~~~~~~~~~~~~ 2023-09-25T22:46:48,161 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/io/file_formats.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/file_formats.o -fopenmp 2023-09-25T22:46:48,376 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect’: 2023-09-25T22:46:48,377 src/ViennaRNA/io/file_formats.c:202:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:46:48,378 202 | for (i = 0; i < strlen(seq) - 1; i++) { 2023-09-25T22:46:48,379 | ^ 2023-09-25T22:46:48,385 src/ViennaRNA/io/file_formats.c: In function ‘vrna_extract_record_rest_structure’: 2023-09-25T22:46:48,386 src/ViennaRNA/io/file_formats.c:600:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:48,387 600 | if ((length > 0) && (r - 1 == length)) 2023-09-25T22:46:48,388 | ^~ 2023-09-25T22:46:48,397 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2023-09-25T22:46:48,398 src/ViennaRNA/io/file_formats.c:919:29: warning: variable ‘tok4’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:46:48,399 919 | long tok1, tok3, tok4, tok5, tok6; 2023-09-25T22:46:48,400 | ^~~~ 2023-09-25T22:46:49,146 src/ViennaRNA/io/file_formats.c:1056:12: warning: ‘tok6’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:46:49,147 1056 | if (!process_ct_nt_line(ct_entry, tok1, tok2, tok3, tok5, tok6)) 2023-09-25T22:46:49,148 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:46:49,148 src/ViennaRNA/io/file_formats.c:919:41: note: ‘tok6’ was declared here 2023-09-25T22:46:49,149 919 | long tok1, tok3, tok4, tok5, tok6; 2023-09-25T22:46:49,149 | ^~~~ 2023-09-25T22:46:49,150 src/ViennaRNA/io/file_formats.c:1056:12: warning: ‘tok5’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:46:49,151 1056 | if (!process_ct_nt_line(ct_entry, tok1, tok2, tok3, tok5, tok6)) 2023-09-25T22:46:49,151 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:46:49,152 src/ViennaRNA/io/file_formats.c:919:35: note: ‘tok5’ was declared here 2023-09-25T22:46:49,152 919 | long tok1, tok3, tok4, tok5, tok6; 2023-09-25T22:46:49,153 | ^~~~ 2023-09-25T22:46:49,153 In function ‘process_ct_nt_line’, 2023-09-25T22:46:49,154 inlined from ‘vrna_file_connect_read_record’ at src/ViennaRNA/io/file_formats.c:1056:12: 2023-09-25T22:46:49,155 src/ViennaRNA/io/file_formats.c:1236:22: warning: ‘tok3’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:46:49,156 1236 | (predecessor == 0)) { 2023-09-25T22:46:49,156 | ~~~~~~~~~~~~~^~~~~ 2023-09-25T22:46:49,156 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2023-09-25T22:46:49,157 src/ViennaRNA/io/file_formats.c:919:23: note: ‘tok3’ was declared here 2023-09-25T22:46:49,157 919 | long tok1, tok3, tok4, tok5, tok6; 2023-09-25T22:46:49,158 | ^~~~ 2023-09-25T22:46:49,158 In function ‘process_ct_nt_line’, 2023-09-25T22:46:49,159 inlined from ‘vrna_file_connect_read_record’ at src/ViennaRNA/io/file_formats.c:1056:12: 2023-09-25T22:46:49,159 src/ViennaRNA/io/file_formats.c:1242:43: warning: ‘tok2’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:46:49,160 1242 | data->sequence[data->sequence_pos++] = nucleotide; 2023-09-25T22:46:49,160 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T22:46:49,161 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2023-09-25T22:46:49,161 src/ViennaRNA/io/file_formats.c:916:33: note: ‘tok2’ was declared here 2023-09-25T22:46:49,162 916 | char c, *line, *end, tok2, **tok, **ptr; 2023-09-25T22:46:49,162 | ^~~~ 2023-09-25T22:46:49,410 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/io/file_formats_msa.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/file_formats_msa.o -fopenmp 2023-09-25T22:46:49,712 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_stockholm_alignment’: 2023-09-25T22:46:49,714 src/ViennaRNA/io/file_formats_msa.c:652:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:46:49,716 652 | for (i = 0; i < strlen(tmp_seq); i++) 2023-09-25T22:46:49,717 | ^ 2023-09-25T22:46:49,718 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_clustal_alignment’: 2023-09-25T22:46:49,719 src/ViennaRNA/io/file_formats_msa.c:901:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:46:49,720 901 | for (i = 0; i < strlen(seq); i++) 2023-09-25T22:46:49,721 | ^ 2023-09-25T22:46:50,640 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/io/io_utils.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/io_utils.o -fopenmp 2023-09-25T22:46:51,130 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/findpath.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/findpath.o -fopenmp 2023-09-25T22:46:51,956 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/move.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/move.o -fopenmp 2023-09-25T22:46:52,268 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/neighbor.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/neighbor.o -fopenmp 2023-09-25T22:46:52,440 In file included from src/ViennaRNA/pair_mat.h:5, 2023-09-25T22:46:52,441 from src/ViennaRNA/landscape/neighbor.c:6: 2023-09-25T22:46:52,442 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_right’: 2023-09-25T22:46:52,443 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:52,444 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:46:52,444 | ^ 2023-09-25T22:46:52,445 src/ViennaRNA/landscape/neighbor.c:362:17: note: in expansion of macro ‘MIN2’ 2023-09-25T22:46:52,446 362 | int length = MIN2(vc->length + 1, end); 2023-09-25T22:46:52,447 | ^~~~ 2023-09-25T22:46:52,447 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:46:52,448 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:46:52,449 | ^~~ 2023-09-25T22:46:52,449 src/ViennaRNA/landscape/neighbor.c:362:17: note: in expansion of macro ‘MIN2’ 2023-09-25T22:46:52,450 362 | int length = MIN2(vc->length + 1, end); 2023-09-25T22:46:52,451 | ^~~~ 2023-09-25T22:46:52,451 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_i_from_right’: 2023-09-25T22:46:52,452 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:52,453 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:46:52,453 | ^ 2023-09-25T22:46:52,454 src/ViennaRNA/landscape/neighbor.c:490:17: note: in expansion of macro ‘MIN2’ 2023-09-25T22:46:52,455 490 | int length = MIN2(vc->length, end); 2023-09-25T22:46:52,455 | ^~~~ 2023-09-25T22:46:52,456 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:46:52,457 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:46:52,457 | ^~~ 2023-09-25T22:46:52,458 src/ViennaRNA/landscape/neighbor.c:490:17: note: in expansion of macro ‘MIN2’ 2023-09-25T22:46:52,459 490 | int length = MIN2(vc->length, end); 2023-09-25T22:46:52,459 | ^~~~ 2023-09-25T22:46:52,466 src/ViennaRNA/landscape/neighbor.c: In function ‘move_nxt_val_bp_right’: 2023-09-25T22:46:52,467 src/ViennaRNA/landscape/neighbor.c:1709:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:46:52,468 1709 | while (j <= length && pt[j] > j) // '(' 2023-09-25T22:46:52,468 | ^~ 2023-09-25T22:46:52,469 src/ViennaRNA/landscape/neighbor.c:1711:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:46:52,470 1711 | if (j > length || (pt[j] <= j && pt[j] > 0)) // ')' /* here, the current loop ends */ 2023-09-25T22:46:52,470 | ^ 2023-09-25T22:46:52,471 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpins’: 2023-09-25T22:46:52,471 src/ViennaRNA/landscape/neighbor.c:1739:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:52,472 1739 | for (i = 1; i <= vc->length; i++) 2023-09-25T22:46:52,472 | ^~ 2023-09-25T22:46:52,473 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpdel’: 2023-09-25T22:46:52,475 src/ViennaRNA/landscape/neighbor.c:1824:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:52,475 1824 | for (i = 1; i <= vc->length; i++) 2023-09-25T22:46:52,476 | ^~ 2023-09-25T22:46:52,477 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpshift’: 2023-09-25T22:46:52,478 src/ViennaRNA/landscape/neighbor.c:1905:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:52,479 1905 | for (i = 1; i <= vc->length; i++) 2023-09-25T22:46:52,479 | ^~ 2023-09-25T22:46:52,480 src/ViennaRNA/landscape/neighbor.c:1917:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:52,481 1917 | if (j < vc->length) { 2023-09-25T22:46:52,481 | ^ 2023-09-25T22:46:52,482 src/ViennaRNA/landscape/neighbor.c:1919:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:46:52,483 1919 | if (k >= 1 && k < vc->length && k != i - 1 && pt_tmp[k + 1] == 0 && 2023-09-25T22:46:52,483 | ^ 2023-09-25T22:46:55,999 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/walk.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/walk.o -fopenmp 2023-09-25T22:46:56,171 src/ViennaRNA/landscape/walk.c:140:1: warning: ‘isShift’ defined but not used [-Wunused-function] 2023-09-25T22:46:56,172 140 | isShift(vrna_move_t *m) 2023-09-25T22:46:56,172 | ^~~~~~~ 2023-09-25T22:46:56,173 In file included from src/ViennaRNA/landscape/walk.c:24: 2023-09-25T22:46:56,173 src/ViennaRNA/landscape/local_neighbors.inc:70:1: warning: ‘free_incremental_movelist’ defined but not used [-Wunused-function] 2023-09-25T22:46:56,174 70 | free_incremental_movelist(struct movelist *m) 2023-09-25T22:46:56,175 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:46:56,175 src/ViennaRNA/landscape/local_neighbors.inc:52:1: warning: ‘init_incremental_movelist’ defined but not used [-Wunused-function] 2023-09-25T22:46:56,176 52 | init_incremental_movelist(unsigned int n) 2023-09-25T22:46:56,176 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:46:56,177 src/ViennaRNA/landscape/local_neighbors.inc:17:1: warning: ‘add_to_incremental_move_list’ defined but not used [-Wunused-function] 2023-09-25T22:46:56,178 17 | add_to_incremental_move_list(vrna_fold_compound_t *fc, 2023-09-25T22:46:56,178 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:46:56,625 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/external.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/external.o -fopenmp 2023-09-25T22:46:56,899 In file included from src/ViennaRNA/loops/external.c:36: 2023-09-25T22:46:56,900 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-09-25T22:46:56,901 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,901 865 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:46:56,902 | ^ 2023-09-25T22:46:56,902 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-09-25T22:46:56,903 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,904 898 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:46:56,904 | ^ 2023-09-25T22:46:56,905 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-09-25T22:46:56,906 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,906 969 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:56,907 | ^ 2023-09-25T22:46:56,907 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-09-25T22:46:56,908 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,909 993 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:56,909 | ^ 2023-09-25T22:46:56,910 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-09-25T22:46:56,910 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,911 1121 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:56,912 | ^ 2023-09-25T22:46:56,912 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-09-25T22:46:56,913 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,913 1145 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:56,914 | ^ 2023-09-25T22:46:56,915 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-09-25T22:46:56,915 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,916 1292 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:46:56,916 | ^ 2023-09-25T22:46:56,917 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-09-25T22:46:56,918 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,918 1320 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:46:56,919 | ^ 2023-09-25T22:46:56,920 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-09-25T22:46:56,920 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,921 1348 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:46:56,921 | ^ 2023-09-25T22:46:56,922 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-09-25T22:46:56,922 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,923 1404 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:56,924 | ^ 2023-09-25T22:46:56,925 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-09-25T22:46:56,925 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,926 1426 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:56,926 | ^ 2023-09-25T22:46:56,927 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-09-25T22:46:56,928 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,928 1450 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:56,929 | ^ 2023-09-25T22:46:56,929 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-09-25T22:46:56,930 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,931 1596 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:46:56,931 | ^ 2023-09-25T22:46:56,932 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-09-25T22:46:56,932 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,933 1628 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:46:56,934 | ^ 2023-09-25T22:46:56,934 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-09-25T22:46:56,935 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,936 1677 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:56,936 | ^ 2023-09-25T22:46:56,937 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-09-25T22:46:56,938 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,938 1698 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:46:56,939 | ^ 2023-09-25T22:46:56,945 In file included from src/ViennaRNA/loops/external.c:14: 2023-09-25T22:46:56,946 src/ViennaRNA/loops/external.c: In function ‘f3_get_stem_contributions_d0’: 2023-09-25T22:46:56,946 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,947 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:46:56,947 | ^ 2023-09-25T22:46:56,948 src/ViennaRNA/loops/external.c:1000:11: note: in expansion of macro ‘MIN2’ 2023-09-25T22:46:56,949 1000 | max_j = MIN2(length - 1, i + maxdist); 2023-09-25T22:46:56,949 | ^~~~ 2023-09-25T22:46:56,950 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:46:56,950 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:46:56,951 | ^~~ 2023-09-25T22:46:56,952 src/ViennaRNA/loops/external.c:1000:11: note: in expansion of macro ‘MIN2’ 2023-09-25T22:46:56,952 1000 | max_j = MIN2(length - 1, i + maxdist); 2023-09-25T22:46:56,953 | ^~~~ 2023-09-25T22:46:56,954 src/ViennaRNA/loops/external.c:1070:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:46:56,954 1070 | if (length <= i + maxdist) { 2023-09-25T22:46:56,955 | ^~ 2023-09-25T22:47:02,275 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/external_bt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/external_bt.o -fopenmp 2023-09-25T22:47:02,547 In file included from src/ViennaRNA/loops/external_bt.c:34: 2023-09-25T22:47:02,547 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-09-25T22:47:02,548 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:02,548 865 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:02,549 | ^ 2023-09-25T22:47:02,550 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-09-25T22:47:02,550 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:02,551 898 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:02,551 | ^ 2023-09-25T22:47:02,552 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-09-25T22:47:02,552 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:02,553 969 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:02,554 | ^ 2023-09-25T22:47:02,554 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-09-25T22:47:02,555 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:02,556 993 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:02,556 | ^ 2023-09-25T22:47:02,557 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-09-25T22:47:02,557 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:02,558 1121 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:02,558 | ^ 2023-09-25T22:47:02,559 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-09-25T22:47:02,559 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:02,560 1145 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:02,561 | ^ 2023-09-25T22:47:02,561 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-09-25T22:47:02,562 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:02,563 1292 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:02,563 | ^ 2023-09-25T22:47:02,564 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-09-25T22:47:02,565 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:02,565 1320 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:02,566 | ^ 2023-09-25T22:47:02,566 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-09-25T22:47:02,567 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:02,567 1348 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:02,568 | ^ 2023-09-25T22:47:02,568 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-09-25T22:47:02,568 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:02,569 1404 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:02,569 | ^ 2023-09-25T22:47:02,570 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-09-25T22:47:02,570 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:02,571 1426 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:02,571 | ^ 2023-09-25T22:47:02,572 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-09-25T22:47:02,572 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:02,573 1450 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:02,573 | ^ 2023-09-25T22:47:02,574 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-09-25T22:47:02,574 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:02,575 1596 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:02,575 | ^ 2023-09-25T22:47:02,576 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-09-25T22:47:02,577 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:02,577 1628 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:02,578 | ^ 2023-09-25T22:47:02,579 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-09-25T22:47:02,579 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:02,580 1677 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:02,581 | ^ 2023-09-25T22:47:02,581 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-09-25T22:47:02,582 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:02,582 1698 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:02,583 | ^ 2023-09-25T22:47:05,082 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/external_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/external_pf.o -fopenmp 2023-09-25T22:47:05,343 In file included from src/ViennaRNA/loops/external_pf.c:32: 2023-09-25T22:47:05,344 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-09-25T22:47:05,344 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:05,345 224 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:05,345 | ^ 2023-09-25T22:47:05,346 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-09-25T22:47:05,347 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:05,347 265 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:05,348 | ^ 2023-09-25T22:47:05,348 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-09-25T22:47:05,349 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:05,349 320 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:05,350 | ^ 2023-09-25T22:47:05,350 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-09-25T22:47:05,351 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:05,352 385 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:05,352 | ^ 2023-09-25T22:47:05,353 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-09-25T22:47:05,354 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:05,354 414 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:05,355 | ^ 2023-09-25T22:47:05,355 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-09-25T22:47:05,356 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:05,357 463 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:05,357 | ^ 2023-09-25T22:47:05,358 src/ViennaRNA/loops/external_pf.c: In function ‘vrna_exp_E_ext_fast_init’: 2023-09-25T22:47:05,359 src/ViennaRNA/loops/external_pf.c:160:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:05,359 160 | for (u = 0; u < domains_up->uniq_motif_count; u++) 2023-09-25T22:47:05,360 | ^ 2023-09-25T22:47:05,360 src/ViennaRNA/loops/external_pf.c:161:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:05,361 161 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-09-25T22:47:05,362 | ^ 2023-09-25T22:47:05,362 src/ViennaRNA/loops/external_pf.c:167:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:05,363 167 | for (u = 0; u <= ud_max_size; u++) 2023-09-25T22:47:05,364 | ^~ 2023-09-25T22:47:05,364 src/ViennaRNA/loops/external_pf.c: In function ‘vrna_exp_E_ext_fast’: 2023-09-25T22:47:05,365 src/ViennaRNA/loops/external_pf.c:270:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:05,366 270 | } else if (j > fc->length) { 2023-09-25T22:47:05,368 | ^ 2023-09-25T22:47:05,368 src/ViennaRNA/loops/external_pf.c: In function ‘reduce_ext_stem_fast’: 2023-09-25T22:47:05,369 src/ViennaRNA/loops/external_pf.c:412:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:05,369 412 | s3 = (((j < n) || circular) && (sn[j + 1] == sn[j])) ? S1[j + 1] : -1; 2023-09-25T22:47:05,370 | ^ 2023-09-25T22:47:06,794 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/hairpin.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/hairpin.o -fopenmp 2023-09-25T22:47:08,280 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/hairpin_bt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/hairpin_bt.o -fopenmp 2023-09-25T22:47:08,613 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/hairpin_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/hairpin_pf.o -fopenmp 2023-09-25T22:47:10,102 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/internal.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/internal.o -fopenmp 2023-09-25T22:47:10,368 In file included from src/ViennaRNA/loops/internal.c:29: 2023-09-25T22:47:10,368 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-09-25T22:47:10,369 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:10,370 71 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:10,371 | ^ 2023-09-25T22:47:10,371 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-09-25T22:47:10,372 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:10,373 110 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:10,373 | ^ 2023-09-25T22:47:10,374 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-09-25T22:47:10,374 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:10,375 141 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:10,376 | ^ 2023-09-25T22:47:10,376 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-09-25T22:47:10,377 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:10,378 183 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:10,379 | ^ 2023-09-25T22:47:10,379 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-09-25T22:47:10,379 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:10,380 222 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:10,380 | ^ 2023-09-25T22:47:10,381 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-09-25T22:47:10,381 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:10,382 726 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:10,382 | ^ 2023-09-25T22:47:10,383 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-09-25T22:47:10,383 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:10,384 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T22:47:10,384 | ^~ 2023-09-25T22:47:10,385 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-09-25T22:47:10,386 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:10,386 780 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:10,387 | ^ 2023-09-25T22:47:10,388 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-09-25T22:47:10,388 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:10,389 821 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:10,390 | ^ 2023-09-25T22:47:13,614 In function ‘E_internal_loop’, 2023-09-25T22:47:13,615 inlined from ‘vrna_E_int_loop’ at src/ViennaRNA/loops/internal.c:86:9: 2023-09-25T22:47:13,616 src/ViennaRNA/loops/internal.c:790:15: warning: ‘eee’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:47:13,617 790 | e = MIN2(e, eee); 2023-09-25T22:47:13,617 src/ViennaRNA/loops/internal.c: In function ‘vrna_E_int_loop’: 2023-09-25T22:47:13,618 src/ViennaRNA/loops/internal.c:372:28: note: ‘eee’ was declared here 2023-09-25T22:47:13,619 372 | int e, eee, *idx, ij, *c, *ggg, *rtype, with_ud, with_gquad, noclose, 2023-09-25T22:47:13,619 | ^~~ 2023-09-25T22:47:15,205 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/internal_bt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/internal_bt.o -fopenmp 2023-09-25T22:47:15,472 In file included from src/ViennaRNA/loops/internal_bt.c:29: 2023-09-25T22:47:15,473 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-09-25T22:47:15,474 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:15,474 71 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:15,475 | ^ 2023-09-25T22:47:15,476 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-09-25T22:47:15,477 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:15,477 110 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:15,477 | ^ 2023-09-25T22:47:15,478 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-09-25T22:47:15,479 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:15,479 141 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:15,480 | ^ 2023-09-25T22:47:15,480 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-09-25T22:47:15,480 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:15,481 183 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:15,481 | ^ 2023-09-25T22:47:15,482 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-09-25T22:47:15,483 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:15,483 222 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:15,484 | ^ 2023-09-25T22:47:15,484 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-09-25T22:47:15,485 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:15,486 726 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:15,486 | ^ 2023-09-25T22:47:15,487 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-09-25T22:47:15,488 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:15,488 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T22:47:15,489 | ^~ 2023-09-25T22:47:15,490 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-09-25T22:47:15,491 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:15,491 780 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:15,492 | ^ 2023-09-25T22:47:15,493 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-09-25T22:47:15,493 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:15,494 821 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:15,494 | ^ 2023-09-25T22:47:19,242 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/internal_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/internal_pf.o -fopenmp 2023-09-25T22:47:19,509 In file included from src/ViennaRNA/loops/internal_pf.c:29: 2023-09-25T22:47:19,510 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-09-25T22:47:19,511 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:19,512 73 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:19,512 | ^ 2023-09-25T22:47:19,513 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-09-25T22:47:19,513 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:19,514 112 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:19,514 | ^ 2023-09-25T22:47:19,515 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-09-25T22:47:19,515 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:19,516 143 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:19,516 | ^ 2023-09-25T22:47:19,517 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-09-25T22:47:19,517 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:19,518 185 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:19,518 | ^ 2023-09-25T22:47:19,519 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-09-25T22:47:19,519 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:19,520 224 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:19,520 | ^ 2023-09-25T22:47:19,521 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-09-25T22:47:19,521 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:19,522 730 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:19,523 | ^ 2023-09-25T22:47:19,523 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-09-25T22:47:19,524 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:19,525 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T22:47:19,525 | ^~ 2023-09-25T22:47:19,526 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-09-25T22:47:19,527 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:19,527 784 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:19,528 | ^ 2023-09-25T22:47:19,528 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-09-25T22:47:19,529 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:19,530 825 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:19,530 | ^ 2023-09-25T22:47:19,538 src/ViennaRNA/loops/internal_pf.c: In function ‘exp_E_int_loop’: 2023-09-25T22:47:19,539 src/ViennaRNA/loops/internal_pf.c:250:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:19,540 250 | if (last_k > se[sn[i]]) 2023-09-25T22:47:19,541 | ^ 2023-09-25T22:47:19,541 src/ViennaRNA/loops/internal_pf.c:331:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:19,542 331 | if (first_l < ss[sn[j]]) 2023-09-25T22:47:19,542 | ^ 2023-09-25T22:47:19,544 src/ViennaRNA/loops/internal_pf.c:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:19,545 415 | if (last_k > se[sn[i]]) 2023-09-25T22:47:19,545 | ^ 2023-09-25T22:47:19,546 src/ViennaRNA/loops/internal_pf.c:426:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:19,546 426 | if (first_l < ss[sn[j]]) 2023-09-25T22:47:19,547 | ^ 2023-09-25T22:47:23,846 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/multibranch.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/multibranch.o -fopenmp 2023-09-25T22:47:24,138 In file included from src/ViennaRNA/loops/multibranch.c:36: 2023-09-25T22:47:24,139 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-09-25T22:47:24,139 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:24,140 76 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:24,141 | ^ 2023-09-25T22:47:24,141 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-09-25T22:47:24,142 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:24,143 95 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:24,143 | ^ 2023-09-25T22:47:24,144 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-09-25T22:47:24,145 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:24,146 124 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:24,146 | ^ 2023-09-25T22:47:24,147 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-09-25T22:47:24,147 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:24,148 155 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:24,149 | ^ 2023-09-25T22:47:24,149 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-09-25T22:47:24,150 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:24,151 328 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:24,151 | ^ 2023-09-25T22:47:24,152 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-09-25T22:47:24,153 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:24,153 397 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:24,154 | ^ 2023-09-25T22:47:24,155 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-09-25T22:47:24,155 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:24,156 530 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:24,156 | ^ 2023-09-25T22:47:24,156 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-09-25T22:47:24,157 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:24,157 663 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:24,158 | ^ 2023-09-25T22:47:24,158 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-09-25T22:47:24,159 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:24,159 802 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:24,160 | ^ 2023-09-25T22:47:24,160 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-09-25T22:47:24,161 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:24,161 849 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:24,162 | ^ 2023-09-25T22:47:24,163 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-09-25T22:47:24,163 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:24,164 888 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:24,165 | ^ 2023-09-25T22:47:24,165 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-09-25T22:47:24,166 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:24,167 947 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:24,168 | ^ 2023-09-25T22:47:24,168 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-09-25T22:47:24,169 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:24,170 983 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:24,170 | ^ 2023-09-25T22:47:24,171 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-09-25T22:47:24,171 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:24,172 1020 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:24,173 | ^ 2023-09-25T22:47:24,173 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-09-25T22:47:24,174 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:24,174 1079 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:24,175 | ^ 2023-09-25T22:47:28,885 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/multibranch_bt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/multibranch_bt.o -fopenmp 2023-09-25T22:47:29,145 In file included from src/ViennaRNA/loops/multibranch_bt.c:30: 2023-09-25T22:47:29,146 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-09-25T22:47:29,147 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:29,147 76 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:29,148 | ^ 2023-09-25T22:47:29,148 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-09-25T22:47:29,149 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:29,149 95 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:29,150 | ^ 2023-09-25T22:47:29,150 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-09-25T22:47:29,151 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:29,151 124 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:29,152 | ^ 2023-09-25T22:47:29,152 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-09-25T22:47:29,153 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:29,154 155 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:29,155 | ^ 2023-09-25T22:47:29,155 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-09-25T22:47:29,156 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:29,157 328 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:29,157 | ^ 2023-09-25T22:47:29,158 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-09-25T22:47:29,159 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:29,159 397 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:29,160 | ^ 2023-09-25T22:47:29,161 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-09-25T22:47:29,161 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:29,162 530 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:29,162 | ^ 2023-09-25T22:47:29,163 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-09-25T22:47:29,163 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:29,164 663 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:29,165 | ^ 2023-09-25T22:47:29,165 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-09-25T22:47:29,166 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:29,167 802 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:29,168 | ^ 2023-09-25T22:47:29,168 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-09-25T22:47:29,168 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:29,169 849 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:29,169 | ^ 2023-09-25T22:47:29,170 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-09-25T22:47:29,170 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:29,171 888 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:29,171 | ^ 2023-09-25T22:47:29,172 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-09-25T22:47:29,172 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:29,173 947 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:29,173 | ^ 2023-09-25T22:47:29,174 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-09-25T22:47:29,174 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:29,175 983 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:29,175 | ^ 2023-09-25T22:47:29,176 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-09-25T22:47:29,177 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:29,177 1020 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:29,178 | ^ 2023-09-25T22:47:29,179 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-09-25T22:47:29,179 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:29,180 1079 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:29,181 | ^ 2023-09-25T22:47:33,617 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/multibranch_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/multibranch_pf.o -fopenmp 2023-09-25T22:47:33,885 src/ViennaRNA/loops/multibranch_pf.c: In function ‘vrna_exp_E_ml_fast_init’: 2023-09-25T22:47:33,886 src/ViennaRNA/loops/multibranch_pf.c:125:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:33,887 125 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-09-25T22:47:33,887 | ^ 2023-09-25T22:47:33,891 In file included from src/ViennaRNA/loops/multibranch_pf.c:11: 2023-09-25T22:47:33,891 src/ViennaRNA/loops/multibranch_pf.c: In function ‘exp_E_mb_loop_fast’: 2023-09-25T22:47:33,892 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:33,893 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:47:33,894 | ^ 2023-09-25T22:47:33,895 src/ViennaRNA/loops/multibranch_pf.c:351:20: note: in expansion of macro ‘MIN2’ 2023-09-25T22:47:33,895 351 | int stop = MIN2(j - 1, se[sn[k - 1]]); 2023-09-25T22:47:33,896 | ^~~~ 2023-09-25T22:47:33,896 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:47:33,897 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:47:33,897 | ^~~ 2023-09-25T22:47:33,898 src/ViennaRNA/loops/multibranch_pf.c:351:20: note: in expansion of macro ‘MIN2’ 2023-09-25T22:47:33,898 351 | int stop = MIN2(j - 1, se[sn[k - 1]]); 2023-09-25T22:47:33,899 | ^~~~ 2023-09-25T22:47:33,899 src/ViennaRNA/loops/multibranch_pf.c: In function ‘exp_E_ml_fast’: 2023-09-25T22:47:33,899 src/ViennaRNA/utils/basic.h:111:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:33,900 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-09-25T22:47:33,901 | ^ 2023-09-25T22:47:33,901 src/ViennaRNA/loops/multibranch_pf.c:566:18: note: in expansion of macro ‘MAX2’ 2023-09-25T22:47:33,902 566 | int stop = MAX2(i, ss[sn[k]]); 2023-09-25T22:47:33,903 | ^~~~ 2023-09-25T22:47:33,904 src/ViennaRNA/utils/basic.h:111:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:47:33,905 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-09-25T22:47:33,905 | ^~~ 2023-09-25T22:47:33,906 src/ViennaRNA/loops/multibranch_pf.c:566:18: note: in expansion of macro ‘MAX2’ 2023-09-25T22:47:33,906 566 | int stop = MAX2(i, ss[sn[k]]); 2023-09-25T22:47:33,907 | ^~~~ 2023-09-25T22:47:33,908 src/ViennaRNA/loops/multibranch_pf.c:587:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:33,909 587 | if (maxk > se[sn[i]]) 2023-09-25T22:47:33,909 | ^ 2023-09-25T22:47:35,815 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mfe.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe.o -fopenmp 2023-09-25T22:47:36,100 In file included from src/ViennaRNA/mfe.c:58: 2023-09-25T22:47:36,101 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-09-25T22:47:36,102 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,102 865 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:36,103 | ^ 2023-09-25T22:47:36,104 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-09-25T22:47:36,104 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,105 898 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:36,106 | ^ 2023-09-25T22:47:36,107 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-09-25T22:47:36,107 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,108 969 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:36,109 | ^ 2023-09-25T22:47:36,110 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-09-25T22:47:36,110 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,111 993 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:36,111 | ^ 2023-09-25T22:47:36,112 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-09-25T22:47:36,112 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,113 1121 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:36,113 | ^ 2023-09-25T22:47:36,114 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-09-25T22:47:36,114 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,115 1145 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:36,115 | ^ 2023-09-25T22:47:36,116 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-09-25T22:47:36,116 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,117 1292 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:36,117 | ^ 2023-09-25T22:47:36,118 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-09-25T22:47:36,119 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,119 1320 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:36,120 | ^ 2023-09-25T22:47:36,121 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-09-25T22:47:36,121 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,122 1348 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:36,123 | ^ 2023-09-25T22:47:36,123 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-09-25T22:47:36,124 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,125 1404 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:36,125 | ^ 2023-09-25T22:47:36,126 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-09-25T22:47:36,126 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,127 1426 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:36,128 | ^ 2023-09-25T22:47:36,128 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-09-25T22:47:36,129 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,130 1450 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:36,131 | ^ 2023-09-25T22:47:36,132 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-09-25T22:47:36,132 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,133 1596 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:36,133 | ^ 2023-09-25T22:47:36,134 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-09-25T22:47:36,134 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,135 1628 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:47:36,135 | ^ 2023-09-25T22:47:36,136 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-09-25T22:47:36,136 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,137 1677 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:36,138 | ^ 2023-09-25T22:47:36,138 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-09-25T22:47:36,139 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,139 1698 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:47:36,140 | ^ 2023-09-25T22:47:36,140 src/ViennaRNA/mfe.c: In function ‘fill_arrays’: 2023-09-25T22:47:36,141 src/ViennaRNA/mfe.c:389:52: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:47:36,141 389 | if (length <= ((fc->strands > 1) ? fc->strands : md->min_loop_size)) { 2023-09-25T22:47:36,142 | ^~~~~~~~~~~~~~~~~ 2023-09-25T22:47:36,143 src/ViennaRNA/mfe.c:389:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,143 389 | if (length <= ((fc->strands > 1) ? fc->strands : md->min_loop_size)) { 2023-09-25T22:47:36,144 | ^~ 2023-09-25T22:47:36,145 src/ViennaRNA/mfe.c: In function ‘postprocess_circular’: 2023-09-25T22:47:36,145 src/ViennaRNA/mfe.c:510:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,146 510 | for (s = 0; s < fc->n_seq; s++) 2023-09-25T22:47:36,147 | ^ 2023-09-25T22:47:36,199 src/ViennaRNA/mfe.c: In function ‘pair_multi_strand’: 2023-09-25T22:47:36,201 src/ViennaRNA/mfe.c:2197:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,201 2197 | if (ends[sn[i]] > i) 2023-09-25T22:47:36,202 | ^ 2023-09-25T22:47:36,203 src/ViennaRNA/mfe.c:2200:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,203 2200 | if (j - 1 > ends[sn[i]]) 2023-09-25T22:47:36,204 | ^ 2023-09-25T22:47:36,206 src/ViennaRNA/mfe.c:2220:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,206 2220 | if (i + 1 <= ends[sn[nick]]) 2023-09-25T22:47:36,207 | ^~ 2023-09-25T22:47:36,208 src/ViennaRNA/mfe.c:2223:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,209 2223 | if (ends[sn[nick]] + 1 <= j - 1) 2023-09-25T22:47:36,209 | ^~ 2023-09-25T22:47:36,215 src/ViennaRNA/mfe.c:2292:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,215 2292 | if (nick > i + 2) 2023-09-25T22:47:36,216 | ^ 2023-09-25T22:47:36,217 src/ViennaRNA/mfe.c:2295:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,217 2295 | if (j > nick + 1) 2023-09-25T22:47:36,218 | ^ 2023-09-25T22:47:36,220 src/ViennaRNA/mfe.c:2325:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,221 2325 | if (nick > i + 2) 2023-09-25T22:47:36,221 | ^ 2023-09-25T22:47:36,223 src/ViennaRNA/mfe.c:2328:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,223 2328 | if (j > nick) 2023-09-25T22:47:36,224 | ^ 2023-09-25T22:47:36,226 src/ViennaRNA/mfe.c:2358:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,227 2358 | if (nick > i + 1) 2023-09-25T22:47:36,227 | ^ 2023-09-25T22:47:36,229 src/ViennaRNA/mfe.c:2361:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,229 2361 | if (j > nick + 1) 2023-09-25T22:47:36,230 | ^ 2023-09-25T22:47:36,231 src/ViennaRNA/mfe.c:2129:29: warning: variable ‘sc_red_ext’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:47:36,232 2129 | sc_ext_red_cb sc_red_ext; 2023-09-25T22:47:36,232 | ^~~~~~~~~~ 2023-09-25T22:47:36,233 src/ViennaRNA/mfe.c:2127:29: warning: variable ‘sc_spl’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:47:36,234 2127 | sc_ext_red_cb sc_spl; 2023-09-25T22:47:36,234 | ^~~~~~ 2023-09-25T22:47:36,236 src/ViennaRNA/mfe.c: In function ‘BT_multi_strand’: 2023-09-25T22:47:36,238 src/ViennaRNA/mfe.c:2477:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,239 2477 | if (ends[sn[*i]] > *i) 2023-09-25T22:47:36,239 | ^ 2023-09-25T22:47:36,241 src/ViennaRNA/mfe.c:2480:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,241 2480 | if (*j - 1 > ends[sn[*i]]) 2023-09-25T22:47:36,242 | ^ 2023-09-25T22:47:36,243 src/ViennaRNA/mfe.c:2486:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,244 2486 | *i = (ends[sn[*i]] > *i) ? *i + 1 : 0; 2023-09-25T22:47:36,244 | ^ 2023-09-25T22:47:36,245 src/ViennaRNA/mfe.c:2487:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,246 2487 | *j = (*j - 1 > ends[sn[*i]]) ? *j - 1 : 0; 2023-09-25T22:47:36,247 | ^ 2023-09-25T22:47:36,248 src/ViennaRNA/mfe.c:2495:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,248 2495 | if (*i + 1 <= ends[sn[nick]]) 2023-09-25T22:47:36,249 | ^~ 2023-09-25T22:47:36,250 src/ViennaRNA/mfe.c:2498:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,251 2498 | if (ends[sn[nick]] + 1 <= *j - 1) 2023-09-25T22:47:36,251 | ^~ 2023-09-25T22:47:36,253 src/ViennaRNA/mfe.c:2504:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,253 2504 | *i = (*i + 1 <= ends[sn[nick]]) ? *i + 1 : 0; 2023-09-25T22:47:36,254 | ^~ 2023-09-25T22:47:36,255 src/ViennaRNA/mfe.c:2505:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,256 2505 | *j = (ends[sn[nick]] + 1 <= *j - 1) ? *j - 1 : 0; 2023-09-25T22:47:36,256 | ^~ 2023-09-25T22:47:36,261 src/ViennaRNA/mfe.c:2590:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,262 2590 | if (nick > *i + 2) 2023-09-25T22:47:36,263 | ^ 2023-09-25T22:47:36,264 src/ViennaRNA/mfe.c:2593:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,265 2593 | if (*j > nick + 1) 2023-09-25T22:47:36,265 | ^ 2023-09-25T22:47:36,267 src/ViennaRNA/mfe.c:2599:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,267 2599 | *i = (nick > *i + 2) ? *i + 2 : 0; 2023-09-25T22:47:36,268 | ^ 2023-09-25T22:47:36,269 src/ViennaRNA/mfe.c:2600:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,270 2600 | *j = (*j > nick + 1) ? *j - 2 : 0; 2023-09-25T22:47:36,270 | ^ 2023-09-25T22:47:36,272 src/ViennaRNA/mfe.c:2623:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,273 2623 | if (nick > *i + 2) 2023-09-25T22:47:36,273 | ^ 2023-09-25T22:47:36,275 src/ViennaRNA/mfe.c:2626:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,275 2626 | if (*j > nick) 2023-09-25T22:47:36,276 | ^ 2023-09-25T22:47:36,278 src/ViennaRNA/mfe.c:2632:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,278 2632 | *i = (nick > *i + 2) ? *i + 2 : 0; 2023-09-25T22:47:36,279 | ^ 2023-09-25T22:47:36,280 src/ViennaRNA/mfe.c:2633:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,280 2633 | *j = (*j > nick) ? *j - 1 : 0; 2023-09-25T22:47:36,281 | ^ 2023-09-25T22:47:36,283 src/ViennaRNA/mfe.c:2656:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,284 2656 | if (nick > *i + 1) 2023-09-25T22:47:36,284 | ^ 2023-09-25T22:47:36,286 src/ViennaRNA/mfe.c:2659:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,286 2659 | if (*j > nick + 1) 2023-09-25T22:47:36,287 | ^ 2023-09-25T22:47:36,289 src/ViennaRNA/mfe.c:2665:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:36,289 2665 | *i = (nick > *i + 1) ? *i + 1 : 0; 2023-09-25T22:47:36,290 | ^ 2023-09-25T22:47:36,291 src/ViennaRNA/mfe.c:2666:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,291 2666 | *j = (*j > nick + 1) ? *j - 2 : 0; 2023-09-25T22:47:36,292 | ^ 2023-09-25T22:47:36,293 src/ViennaRNA/mfe.c:2403:29: warning: variable ‘sc_red_ext’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:47:36,294 2403 | sc_ext_red_cb sc_red_ext; 2023-09-25T22:47:36,294 | ^~~~~~~~~~ 2023-09-25T22:47:36,295 src/ViennaRNA/mfe.c:2401:29: warning: variable ‘sc_spl’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:47:36,296 2401 | sc_ext_red_cb sc_spl; 2023-09-25T22:47:36,296 | ^~~~~~ 2023-09-25T22:47:36,321 src/ViennaRNA/mfe.c: In function ‘backtrack’: 2023-09-25T22:47:36,323 src/ViennaRNA/mfe.c:3261:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,324 3261 | if (k < fc->strand_end[strand]) { 2023-09-25T22:47:36,324 | ^ 2023-09-25T22:47:36,327 src/ViennaRNA/mfe.c:3296:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:36,328 3296 | if (k > fc->strand_start[strand]) { 2023-09-25T22:47:36,328 | ^ 2023-09-25T22:47:44,451 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mfe_window.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe_window.o -fopenmp 2023-09-25T22:47:44,784 src/ViennaRNA/mfe_window.c: In function ‘backtrack’: 2023-09-25T22:47:44,785 src/ViennaRNA/mfe_window.c:930:68: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:47:44,786 930 | if ((bp_stack[b].i == bp_stack[b].j) && (bp_stack[b].i < length)) 2023-09-25T22:47:44,787 | ^ 2023-09-25T22:47:44,789 src/ViennaRNA/mfe_window.c:1051:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:44,789 1051 | if (max3 < bp_stack[i].j - start) 2023-09-25T22:47:44,790 | ^ 2023-09-25T22:47:44,795 src/ViennaRNA/mfe_window.c: In function ‘update_block’: 2023-09-25T22:47:44,796 src/ViennaRNA/mfe_window.c:1312:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:47:44,796 1312 | for (size_t pos = i_local + 1; pos <= end; pos++) 2023-09-25T22:47:44,797 | ^~ 2023-09-25T22:47:44,797 src/ViennaRNA/mfe_window.c:1313:22: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:47:44,798 1313 | if (b->pt[pos] > pos) { 2023-09-25T22:47:44,799 | ^ 2023-09-25T22:47:44,799 src/ViennaRNA/mfe_window.c:1348:24: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:47:44,800 1348 | if (b->pt[p] > p) { 2023-09-25T22:47:44,801 | ^ 2023-09-25T22:47:44,804 src/ViennaRNA/mfe_window.c: In function ‘insert_block’: 2023-09-25T22:47:44,805 src/ViennaRNA/mfe_window.c:1592:21: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T22:47:44,805 1592 | if (pt[i_local] > i_local) { 2023-09-25T22:47:44,806 | ^ 2023-09-25T22:47:44,806 src/ViennaRNA/mfe_window.c: In function ‘print_block_list’: 2023-09-25T22:47:44,808 src/ViennaRNA/mfe_window.c:1611:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-09-25T22:47:44,808 1611 | printf("block %lu: en=%d, start: %lu, end: %lu, shift: %lu\n", 2023-09-25T22:47:44,809 | ~~^ 2023-09-25T22:47:44,809 | | 2023-09-25T22:47:44,809 | long unsigned int 2023-09-25T22:47:44,810 | %u 2023-09-25T22:47:44,810 1612 | cnt, 2023-09-25T22:47:44,810 | ~~~ 2023-09-25T22:47:44,811 | | 2023-09-25T22:47:44,811 | size_t {aka unsigned int} 2023-09-25T22:47:44,812 src/ViennaRNA/mfe_window.c:1617:13: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-09-25T22:47:44,812 1617 | printf("%lu blocks remaining\n", cnt); 2023-09-25T22:47:44,813 | ~~^ ~~~ 2023-09-25T22:47:44,813 | | | 2023-09-25T22:47:44,814 | long unsigned int size_t {aka unsigned int} 2023-09-25T22:47:44,815 | %u 2023-09-25T22:47:44,845 src/ViennaRNA/mfe_window.c: At top level: 2023-09-25T22:47:44,846 src/ViennaRNA/mfe_window.c:1605:1: warning: ‘print_block_list’ defined but not used [-Wunused-function] 2023-09-25T22:47:44,847 1605 | print_block_list(struct block *block_list) 2023-09-25T22:47:44,847 | ^~~~~~~~~~~~~~~~ 2023-09-25T22:47:46,777 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mfe_window_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe_window_wrappers.o -fopenmp 2023-09-25T22:47:47,022 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mfe_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe_wrappers.o -fopenmp 2023-09-25T22:47:47,273 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mm.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mm.o -fopenmp 2023-09-25T22:47:47,487 src/ViennaRNA/mm.c: In function ‘maximumMatchingConstraint’: 2023-09-25T22:47:47,488 src/ViennaRNA/mm.c:154:25: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:47,488 154 | if (ptable[l] != j) 2023-09-25T22:47:47,489 | ^~ 2023-09-25T22:47:47,490 src/ViennaRNA/mm.c: In function ‘maximumMatching2Constraint’: 2023-09-25T22:47:47,491 src/ViennaRNA/mm.c:187:25: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:47,492 187 | if (ptable[l] != j && ptable2[l] != j) 2023-09-25T22:47:47,492 | ^~ 2023-09-25T22:47:47,493 src/ViennaRNA/mm.c:187:44: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:47:47,493 187 | if (ptable[l] != j && ptable2[l] != j) 2023-09-25T22:47:47,494 | ^~ 2023-09-25T22:47:48,162 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/model.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/model.o -fopenmp 2023-09-25T22:47:49,157 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/move_set.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/move_set.o -fopenmp 2023-09-25T22:47:51,260 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/convert.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/convert.o -fopenmp 2023-09-25T22:47:52,027 In file included from src/ViennaRNA/params/convert.c:27: 2023-09-25T22:47:52,028 src/ViennaRNA/params/1.8.4_epars.h:100:13: warning: ‘oldinternal_loop37_184’ defined but not used [-Wunused-variable] 2023-09-25T22:47:52,029 100 | PRIVATE int oldinternal_loop37_184[31] = { 2023-09-25T22:47:52,029 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:47:52,030 src/ViennaRNA/params/1.8.4_epars.h:90:13: warning: ‘oldbulge37_184’ defined but not used [-Wunused-variable] 2023-09-25T22:47:52,031 90 | PRIVATE int oldbulge37_184[31] = { 2023-09-25T22:47:52,032 | ^~~~~~~~~~~~~~ 2023-09-25T22:47:52,032 src/ViennaRNA/params/1.8.4_epars.h:80:13: warning: ‘oldhairpin37_184’ defined but not used [-Wunused-variable] 2023-09-25T22:47:52,033 80 | PRIVATE int oldhairpin37_184[31] = { /* from ViennaRNA 1.3 */ 2023-09-25T22:47:52,034 | ^~~~~~~~~~~~~~~~ 2023-09-25T22:47:52,034 src/ViennaRNA/params/1.8.4_epars.h:50:16: warning: ‘Tmeasure_184’ defined but not used [-Wunused-variable] 2023-09-25T22:47:52,035 50 | PRIVATE double Tmeasure_184 = 37 + K0; /* temperature of param measurements */ 2023-09-25T22:47:52,035 | ^~~~~~~~~~~~ 2023-09-25T22:47:53,002 In function ‘write_new_parameter_file’, 2023-09-25T22:47:53,003 inlined from ‘convert_parameter_file’ at src/ViennaRNA/params/convert.c:172:3: 2023-09-25T22:47:53,004 src/ViennaRNA/params/convert.c:1166:9: warning: ‘strncpy’ specified bound 6 equals destination size [-Wstringop-truncation] 2023-09-25T22:47:53,004 1166 | strncpy(bla, Tetraloops_184 + c * 7, 6); 2023-09-25T22:47:53,005 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:47:53,005 src/ViennaRNA/params/convert.c:1145:9: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 240 [-Wstringop-truncation] 2023-09-25T22:47:53,006 1145 | strncpy(bla, Triloops_184 + c * 6, 5); 2023-09-25T22:47:53,006 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:47:54,425 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/default.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/default.o -fopenmp 2023-09-25T22:47:55,342 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/io.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/io.o -fopenmp 2023-09-25T22:48:05,508 src/ViennaRNA/params/io.c: In function ‘save_parameter_file’: 2023-09-25T22:48:05,509 src/ViennaRNA/params/io.c:1613:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:48:05,510 1613 | for (c = 0; c < strlen(Hexaloops) / 9; c++) 2023-09-25T22:48:05,510 | ^ 2023-09-25T22:48:05,511 src/ViennaRNA/params/io.c:1617:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:48:05,512 1617 | for (c = 0; c < strlen(Tetraloops) / 7; c++) 2023-09-25T22:48:05,512 | ^ 2023-09-25T22:48:05,513 src/ViennaRNA/params/io.c:1621:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:48:05,514 1621 | for (c = 0; c < strlen(Triloops) / 6; c++) 2023-09-25T22:48:05,514 | ^ 2023-09-25T22:48:05,526 src/ViennaRNA/params/io.c: In function ‘write_parameter_file’: 2023-09-25T22:48:05,528 src/ViennaRNA/params/io.c:2096:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:48:05,529 2096 | for (c = 0; c < strlen(Hexaloops) / 9; c++) 2023-09-25T22:48:05,529 | ^ 2023-09-25T22:48:05,530 src/ViennaRNA/params/io.c:2100:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:48:05,531 2100 | for (c = 0; c < strlen(Tetraloops) / 7; c++) 2023-09-25T22:48:05,531 | ^ 2023-09-25T22:48:05,533 src/ViennaRNA/params/io.c:2104:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:48:05,534 2104 | for (c = 0; c < strlen(Triloops) / 6; c++) 2023-09-25T22:48:05,534 | ^ 2023-09-25T22:48:05,559 src/ViennaRNA/params/io.c: At top level: 2023-09-25T22:48:05,560 src/ViennaRNA/params/io.c:1003:1: warning: ‘rd_6dim’ defined but not used [-Wunused-function] 2023-09-25T22:48:05,561 1003 | rd_6dim(char **content, 2023-09-25T22:48:05,561 | ^~~~~~~ 2023-09-25T22:48:08,814 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/params.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/params.o -fopenmp 2023-09-25T22:48:09,076 src/ViennaRNA/params/params.c: In function ‘rescale_params’: 2023-09-25T22:48:09,076 src/ViennaRNA/params/params.c:1088:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:09,077 1088 | for (i = 2; i <= vc->length; i++) { 2023-09-25T22:48:09,078 | ^~ 2023-09-25T22:48:12,057 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/salt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/salt.o -fopenmp 2023-09-25T22:48:12,257 src/ViennaRNA/params/salt.c: In function ‘vrna_salt_duplex_init’: 2023-09-25T22:48:12,258 src/ViennaRNA/params/salt.c:193:19: warning: unused variable ‘penalty’ [-Wunused-variable] 2023-09-25T22:48:12,259 193 | double a, x, penalty; 2023-09-25T22:48:12,260 | ^~~~~~~ 2023-09-25T22:48:12,260 src/ViennaRNA/params/salt.c:193:13: warning: unused variable ‘a’ [-Wunused-variable] 2023-09-25T22:48:12,261 193 | double a, x, penalty; 2023-09-25T22:48:12,261 | ^ 2023-09-25T22:48:12,452 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/part_func.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/part_func.o -fopenmp 2023-09-25T22:48:12,773 src/ViennaRNA/part_func.c: In function ‘postprocess_circular’: 2023-09-25T22:48:12,773 src/ViennaRNA/part_func.c:770:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:12,774 770 | for (s = 0; s < fc->n_seq; s++) 2023-09-25T22:48:12,774 | ^ 2023-09-25T22:48:13,995 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/part_func_co.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/part_func_co.o -fopenmp 2023-09-25T22:48:14,522 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/part_func_up.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/part_func_up.o -fopenmp 2023-09-25T22:48:14,776 src/ViennaRNA/part_func_up.c: In function ‘free_pu_contrib_struct’: 2023-09-25T22:48:14,776 src/ViennaRNA/part_func_up.c:222:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:48:14,777 222 | for (i = 0; i <= pu->length; i++) { 2023-09-25T22:48:14,778 | ^~ 2023-09-25T22:48:14,778 src/ViennaRNA/part_func_up.c: In function ‘pf_unstru’: 2023-09-25T22:48:14,779 src/ViennaRNA/part_func_up.c:270:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:14,780 270 | for (i = 0; i < size; i++) 2023-09-25T22:48:14,780 | ^ 2023-09-25T22:48:17,811 src/ViennaRNA/part_func_up.c: In function ‘pf_interact’: 2023-09-25T22:48:17,812 src/ViennaRNA/part_func_up.c:911:69: warning: ‘p_c2_S’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:48:17,813 911 | tt = qint_4[i][j][a][b] * p_c_S[add_i5][add_i3] * p_c2_S[j][b] * scalew * rev_d; 2023-09-25T22:48:17,814 | ^ 2023-09-25T22:48:17,837 src/ViennaRNA/part_func_up.c:594:49: note: ‘p_c2_S’ was declared here 2023-09-25T22:48:17,838 594 | double temp, Z, rev_d, E, Z2, **p_c_S, **p_c2_S, int_scale; 2023-09-25T22:48:17,839 | ^~~~~~ 2023-09-25T22:48:18,879 src/ViennaRNA/part_func_up.c: In function ‘Up_plot’: 2023-09-25T22:48:18,880 src/ViennaRNA/part_func_up.c:1615:10: warning: ‘ret’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:48:18,881 1615 | return ret; 2023-09-25T22:48:18,881 | ^~~ 2023-09-25T22:48:18,881 src/ViennaRNA/part_func_up.c:1587:11: note: ‘ret’ was declared here 2023-09-25T22:48:18,882 1587 | int ret; 2023-09-25T22:48:18,883 | ^~~ 2023-09-25T22:48:19,031 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/part_func_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/part_func_wrappers.o -fopenmp 2023-09-25T22:48:19,322 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/perturbation_fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/perturbation_fold.o -fopenmp 2023-09-25T22:48:20,050 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/pf_fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/pf_fold.o -fopenmp 2023-09-25T22:48:20,859 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/pf_multifold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/pf_multifold.o -fopenmp 2023-09-25T22:48:20,989 src/ViennaRNA/pf_multifold.c: In function ‘mf_rule_pair’: 2023-09-25T22:48:20,990 src/ViennaRNA/pf_multifold.c:121:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:20,991 121 | if (i + 1 <= ends[sn[nick]]) 2023-09-25T22:48:20,992 | ^~ 2023-09-25T22:48:20,993 src/ViennaRNA/pf_multifold.c:124:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:48:20,994 124 | if (ends[sn[nick]] + 1 <= j - 1) 2023-09-25T22:48:20,995 | ^~ 2023-09-25T22:48:21,294 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plex.o -fopenmp 2023-09-25T22:48:21,537 src/ViennaRNA/plex.c: In function ‘duplexfold_XS’: 2023-09-25T22:48:21,538 src/ViennaRNA/plex.c:431:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:21,538 431 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2023-09-25T22:48:21,539 | ^~~~~~~ 2023-09-25T22:48:21,556 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-09-25T22:48:21,557 src/ViennaRNA/plex.c:759:11: warning: unused variable ‘jdiff’ [-Wunused-variable] 2023-09-25T22:48:21,557 759 | int jdiff = j_pos + j - 11; 2023-09-25T22:48:21,558 | ^~~~~ 2023-09-25T22:48:21,560 src/ViennaRNA/plex.c:1010:7: warning: variable ‘endy’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:21,561 1010 | int endy; 2023-09-25T22:48:21,561 | ^~~~ 2023-09-25T22:48:21,562 src/ViennaRNA/plex.c:1008:7: warning: variable ‘endx’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:21,562 1008 | int endx; 2023-09-25T22:48:21,563 | ^~~~ 2023-09-25T22:48:21,563 src/ViennaRNA/plex.c:624:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:21,564 624 | int maxPenalty[4]; 2023-09-25T22:48:21,564 | ^~~~~~~~~~ 2023-09-25T22:48:21,587 src/ViennaRNA/plex.c: In function ‘fbacktrack_XS’: 2023-09-25T22:48:21,587 src/ViennaRNA/plex.c:1107:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:21,588 1107 | int maxPenalty[4]; 2023-09-25T22:48:21,588 | ^~~~~~~~~~ 2023-09-25T22:48:21,606 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2023-09-25T22:48:21,608 src/ViennaRNA/plex.c:1938:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:21,608 1938 | int maxPenalty[4]; 2023-09-25T22:48:21,609 | ^~~~~~~~~~ 2023-09-25T22:48:21,625 src/ViennaRNA/plex.c: In function ‘duplexfold’: 2023-09-25T22:48:21,627 src/ViennaRNA/plex.c:2663:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:21,627 2663 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T22:48:21,628 | ^~ 2023-09-25T22:48:21,650 src/ViennaRNA/plex.c: In function ‘fduplexfold’: 2023-09-25T22:48:21,652 src/ViennaRNA/plex.c:2851:39: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:21,653 2851 | int i, j, Emin, i_min, j_min, l1; 2023-09-25T22:48:21,654 | ^~ 2023-09-25T22:48:23,407 src/ViennaRNA/plex.c:3177:16: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:48:23,408 3177 | j0 = MAX2(j - 1, 11); 2023-09-25T22:48:23,408 | ^ 2023-09-25T22:48:23,409 src/ViennaRNA/plex.c:2862:13: note: ‘max_pos_j’ was declared here 2023-09-25T22:48:23,410 2862 | int max_pos_j; 2023-09-25T22:48:23,411 | ^~~~~~~~~ 2023-09-25T22:48:23,411 In function ‘fbacktrack’, 2023-09-25T22:48:23,412 inlined from ‘fduplexfold’ at src/ViennaRNA/plex.c:3115:11: 2023-09-25T22:48:23,412 src/ViennaRNA/plex.c:3189:20: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:48:23,413 3189 | type = pair[S1[i]][S2[j]]; 2023-09-25T22:48:23,413 | ^ 2023-09-25T22:48:23,414 src/ViennaRNA/plex.c: In function ‘fduplexfold’: 2023-09-25T22:48:23,415 src/ViennaRNA/plex.c:2861:13: note: ‘max_pos’ was declared here 2023-09-25T22:48:23,415 2861 | int max_pos; /* get position of the best hit */ 2023-09-25T22:48:23,416 | ^~~~~~~ 2023-09-25T22:48:26,320 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-09-25T22:48:26,320 src/ViennaRNA/plex.c:1023:6: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:48:26,321 1023 | if (j_min > 11) 2023-09-25T22:48:26,322 | ^ 2023-09-25T22:48:26,323 src/ViennaRNA/plex.c:619:13: note: ‘max_pos_j’ was declared here 2023-09-25T22:48:26,324 619 | int max_pos_j; 2023-09-25T22:48:26,324 | ^~~~~~~~~ 2023-09-25T22:48:26,325 In function ‘fbacktrack_XS’, 2023-09-25T22:48:26,325 inlined from ‘fduplexfold_XS’ at src/ViennaRNA/plex.c:988:11: 2023-09-25T22:48:26,326 src/ViennaRNA/plex.c:1126:20: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:48:26,326 1126 | type = pair[S1[i]][S2[j]]; 2023-09-25T22:48:26,327 | ^ 2023-09-25T22:48:26,328 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-09-25T22:48:26,328 src/ViennaRNA/plex.c:618:13: note: ‘max_pos’ was declared here 2023-09-25T22:48:26,329 618 | int max_pos; /* get position of the best hit */ 2023-09-25T22:48:26,329 | ^~~~~~~ 2023-09-25T22:48:28,400 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2023-09-25T22:48:28,402 src/ViennaRNA/plex.c:2317:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:48:28,403 2317 | position_j[i + delta] = min_j_colonne; 2023-09-25T22:48:28,403 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T22:48:28,404 src/ViennaRNA/plex.c:1934:13: note: ‘min_j_colonne’ was declared here 2023-09-25T22:48:28,404 1934 | int min_j_colonne; 2023-09-25T22:48:28,405 | ^~~~~~~~~~~~~ 2023-09-25T22:48:29,571 src/ViennaRNA/plex.c: In function ‘Lduplexfold’: 2023-09-25T22:48:29,584 src/ViennaRNA/plex.c:4087:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:48:29,585 4087 | position_j[i + delta] = min_j_colonne; 2023-09-25T22:48:29,586 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T22:48:29,586 src/ViennaRNA/plex.c:3786:13: note: ‘min_j_colonne’ was declared here 2023-09-25T22:48:29,587 3786 | int min_j_colonne; 2023-09-25T22:48:29,588 | ^~~~~~~~~~~~~ 2023-09-25T22:48:30,602 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plex_functions.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plex_functions.o -fopenmp 2023-09-25T22:48:30,847 src/ViennaRNA/plex_functions.c: In function ‘vrna_pk_plex’: 2023-09-25T22:48:30,848 src/ViennaRNA/plex_functions.c:250:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:30,848 250 | for (i = hit_ptr->start_5; i <= hit_ptr->end_5; i++) 2023-09-25T22:48:30,849 | ^~ 2023-09-25T22:48:30,850 src/ViennaRNA/plex_functions.c:252:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:30,850 252 | for (i = hit_ptr->start_3; i <= hit_ptr->end_3; i++) 2023-09-25T22:48:30,851 | ^~ 2023-09-25T22:48:30,851 src/ViennaRNA/plex_functions.c:284:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:30,854 284 | for (i = hit_ptr->start_5 - 1; i < hit_ptr->end_5; i++) 2023-09-25T22:48:30,855 | ^ 2023-09-25T22:48:30,856 src/ViennaRNA/plex_functions.c:288:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:30,857 288 | for (i = hit_ptr->start_3 - 1; i < hit_ptr->end_3; i++) 2023-09-25T22:48:30,858 | ^ 2023-09-25T22:48:30,858 src/ViennaRNA/plex_functions.c: In function ‘duplexfold_XS’: 2023-09-25T22:48:30,859 src/ViennaRNA/plex_functions.c:563:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:48:30,859 563 | if (n > turn + 1) { 2023-09-25T22:48:30,860 | ^ 2023-09-25T22:48:30,860 src/ViennaRNA/plex_functions.c:575:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:30,861 575 | for (j = i + turn + 1; j <= n; j++) { 2023-09-25T22:48:30,861 | ^~ 2023-09-25T22:48:30,862 src/ViennaRNA/plex_functions.c:591:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:30,862 591 | for (l = i + turn + 1; l <= n; l++) { 2023-09-25T22:48:30,863 | ^~ 2023-09-25T22:48:30,863 src/ViennaRNA/plex_functions.c:632:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:30,864 632 | for (j = i + turn + 1; j <= n; j++) { 2023-09-25T22:48:30,864 | ^~ 2023-09-25T22:48:30,865 In file included from src/ViennaRNA/plex_functions.c:25: 2023-09-25T22:48:30,865 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:48:30,866 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:48:30,866 | ^ 2023-09-25T22:48:30,867 src/ViennaRNA/plex_functions.c:634:23: note: in expansion of macro ‘MIN2’ 2023-09-25T22:48:30,868 634 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2023-09-25T22:48:30,868 | ^~~~ 2023-09-25T22:48:30,869 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:48:30,870 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T22:48:30,872 | ^~~ 2023-09-25T22:48:30,873 src/ViennaRNA/plex_functions.c:634:23: note: in expansion of macro ‘MIN2’ 2023-09-25T22:48:30,873 634 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2023-09-25T22:48:30,874 | ^~~~ 2023-09-25T22:48:30,875 src/ViennaRNA/plex_functions.c:640:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:30,875 640 | sl = (l < n) ? S1[l + 1] : -1; 2023-09-25T22:48:30,876 | ^ 2023-09-25T22:48:32,365 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.o -fopenmp 2023-09-25T22:48:32,527 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-09-25T22:48:32,528 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-09-25T22:48:32,528 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:40: warning: argument 1 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T22:48:32,529 470 | isToTheRightPointVector(const double *lineStart, 2023-09-25T22:48:32,530 | ~~~~~~~~~~~~~~~^~~~~~~~~ 2023-09-25T22:48:32,531 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:102:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T22:48:32,531 102 | isToTheRightPointVector(const double lineStart[2], 2023-09-25T22:48:32,532 | ~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T22:48:32,533 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:471:40: warning: argument 2 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T22:48:32,533 471 | const double *lineVector, 2023-09-25T22:48:32,534 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2023-09-25T22:48:32,534 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:103:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T22:48:32,535 103 | const double lineVector[2], 2023-09-25T22:48:32,535 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2023-09-25T22:48:32,536 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:472:40: warning: argument 3 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T22:48:32,536 472 | const double *point) 2023-09-25T22:48:32,537 | ~~~~~~~~~~~~~~~^~~~~ 2023-09-25T22:48:32,538 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:104:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T22:48:32,538 104 | const double point[2]); 2023-09-25T22:48:32,539 | ~~~~~~~~~~~~~~^~~~~~~~ 2023-09-25T22:48:32,539 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-09-25T22:48:32,540 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:32,540 846 | double alpha[3]; 2023-09-25T22:48:32,541 | ^~~~~ 2023-09-25T22:48:32,597 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:19: 2023-09-25T22:48:32,597 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectLineArc’: 2023-09-25T22:48:32,598 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:285:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,598 285 | char *fnName = "intersectLineArc"; 2023-09-25T22:48:32,599 | ^~~~~~ 2023-09-25T22:48:32,599 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectArcArc’: 2023-09-25T22:48:32,600 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:341:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,600 341 | char *fnName = "intersectArcArc"; 2023-09-25T22:48:32,601 | ^~~~~~ 2023-09-25T22:48:32,605 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:19, 2023-09-25T22:48:32,605 from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-09-25T22:48:32,606 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-09-25T22:48:32,607 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-09-25T22:48:32,607 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc: In function ‘ClosestPtPointBulge’: 2023-09-25T22:48:32,608 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:151:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,608 151 | char *fnName = "CLOSEST ON BULGE"; 2023-09-25T22:48:32,609 | ^~~~~~ 2023-09-25T22:48:32,618 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodesBoundingBoxes’: 2023-09-25T22:48:32,619 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:142:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,619 142 | const char *fnName = "intersectNodesBoundingBoxes"; 2023-09-25T22:48:32,620 | ^~~~~~ 2023-09-25T22:48:32,620 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodeNode’: 2023-09-25T22:48:32,621 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:179:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,621 179 | const char *fnName = "intersectNodeNode"; 2023-09-25T22:48:32,622 | ^~~~~~ 2023-09-25T22:48:32,626 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:23: 2023-09-25T22:48:32,627 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc: In function ‘checkAndApplyConfigChanges’: 2023-09-25T22:48:32,627 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:109:13: warning: unused variable ‘newRadius’ [-Wunused-variable] 2023-09-25T22:48:32,628 109 | double newRadius = cfg->radius; 2023-09-25T22:48:32,628 | ^~~~~~~~~ 2023-09-25T22:48:32,629 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:104:13: warning: unused variable ‘oldRadius’ [-Wunused-variable] 2023-09-25T22:48:32,629 104 | double oldRadius = cfg->radius; 2023-09-25T22:48:32,630 | ^~~~~~~~~ 2023-09-25T22:48:32,630 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:100:9: warning: unused variable ‘logTag’ [-Wunused-variable] 2023-09-25T22:48:32,631 100 | char *logTag = intersectionTypeToString(it); 2023-09-25T22:48:32,631 | ^~~~~~ 2023-09-25T22:48:32,632 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:61:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,633 61 | char *fnName = "checkAndApplyConfigChanges"; 2023-09-25T22:48:32,633 | ^~~~~~ 2023-09-25T22:48:32,634 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusLinearSearch’: 2023-09-25T22:48:32,634 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:84:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,635 84 | char *fnName = "shrinkLoopRadiusLinearSearch"; 2023-09-25T22:48:32,636 | ^~~~~~ 2023-09-25T22:48:32,636 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusBinarySearch’: 2023-09-25T22:48:32,637 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:162:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,637 162 | char *fnName = "shrinkLoopRadiusBinarySearch"; 2023-09-25T22:48:32,638 | ^~~~~~ 2023-09-25T22:48:32,639 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeNode’: 2023-09-25T22:48:32,640 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:694:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,640 694 | char *fnName = "optimizeNode"; 2023-09-25T22:48:32,641 | ^~~~~~ 2023-09-25T22:48:32,642 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTreeRecursive’: 2023-09-25T22:48:32,642 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:889:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,643 889 | char *fnName = "optimizeTreeRecursive"; 2023-09-25T22:48:32,643 | ^~~~~~ 2023-09-25T22:48:32,644 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTree’: 2023-09-25T22:48:32,644 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:943:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,645 943 | char *fnName = "optimizeTree"; 2023-09-25T22:48:32,646 | ^~~~~~ 2023-09-25T22:48:32,646 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:22, 2023-09-25T22:48:32,647 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:14: 2023-09-25T22:48:32,647 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasEquidistantIncrease’: 2023-09-25T22:48:32,648 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:53:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,648 53 | char *fnName = "CALC DELTAS EQUIDISTANT INCREASE"; 2023-09-25T22:48:32,649 | ^~~~~~ 2023-09-25T22:48:32,649 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasMaximumFirstDecrease’: 2023-09-25T22:48:32,650 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:82:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,650 82 | char *fnName = "CALC DELTAS MAXIMUM FIRST DECREASE"; 2023-09-25T22:48:32,651 | ^~~~~~ 2023-09-25T22:48:32,651 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasNearestNeighborsFirstDecrease’: 2023-09-25T22:48:32,652 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:191:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,652 191 | char *fnName = "CALC DELTAS NEAREST NEIGHBOR FIRST DECREASE"; 2023-09-25T22:48:32,653 | ^~~~~~ 2023-09-25T22:48:32,655 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltas’: 2023-09-25T22:48:32,656 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:310:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,656 310 | char *fnName = "CALC DELTAS"; 2023-09-25T22:48:32,657 | ^~~~~~ 2023-09-25T22:48:32,658 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘fixIntersectionOfSiblings’: 2023-09-25T22:48:32,658 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:76:18: warning: unused variable ‘rightNode’ [-Wunused-variable] 2023-09-25T22:48:32,659 76 | treeNode *rightNode = getChild(tree, right); 2023-09-25T22:48:32,660 | ^~~~~~~~~ 2023-09-25T22:48:32,660 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:75:18: warning: unused variable ‘leftNode’ [-Wunused-variable] 2023-09-25T22:48:32,661 75 | treeNode *leftNode = getChild(tree, left); 2023-09-25T22:48:32,661 | ^~~~~~~~ 2023-09-25T22:48:32,662 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘handleIntersectionOfSiblings’: 2023-09-25T22:48:32,662 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:103:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,663 103 | char *fnName = "FIX INTERSECTION OF SIBLINGS"; 2023-09-25T22:48:32,663 | ^~~~~~ 2023-09-25T22:48:32,664 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘checkSiblings’: 2023-09-25T22:48:32,665 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:153:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,665 153 | char *fnName = "CHECK SIBLINGS"; 2023-09-25T22:48:32,666 | ^~~~~~ 2023-09-25T22:48:32,669 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:23, 2023-09-25T22:48:32,670 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15: 2023-09-25T22:48:32,670 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘pointToAngle’: 2023-09-25T22:48:32,671 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:31:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,672 31 | char *fnName = "POINT TO ANGLE"; 2023-09-25T22:48:32,672 | ^~~~~~ 2023-09-25T22:48:32,673 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfRectangleAndCircle’: 2023-09-25T22:48:32,674 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:169:14: warning: unused variable ‘staticRectExt’ [-Wunused-variable] 2023-09-25T22:48:32,674 169 | double staticRectExt[2] = { 2023-09-25T22:48:32,675 | ^~~~~~~~~~~~~ 2023-09-25T22:48:32,675 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:74:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,676 74 | char *fnName = "fixIntersectionOfCircleAndRectangle"; 2023-09-25T22:48:32,677 | ^~~~~~ 2023-09-25T22:48:32,677 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfCircles’: 2023-09-25T22:48:32,678 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:204:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,678 204 | char *fnName = "fixIntersectionOfCircles"; 2023-09-25T22:48:32,679 | ^~~~~~ 2023-09-25T22:48:32,679 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxL’: 2023-09-25T22:48:32,680 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:310:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,680 310 | char *fnName = "getRotationAngleLxL"; 2023-09-25T22:48:32,681 | ^~~~~~ 2023-09-25T22:48:32,681 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxS’: 2023-09-25T22:48:32,682 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:349:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,683 349 | char *fnName = "getRotationAngleLxS"; 2023-09-25T22:48:32,683 | ^~~~~~ 2023-09-25T22:48:32,684 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxL’: 2023-09-25T22:48:32,684 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:382:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,685 382 | char *fnName = "getRotationAngleSxL"; 2023-09-25T22:48:32,685 | ^~~~~~ 2023-09-25T22:48:32,686 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxB’: 2023-09-25T22:48:32,686 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:434:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T22:48:32,687 434 | short intersect = intersectLoopBulges(staticLoop, mobileStem, &mobileBulgeIndex); 2023-09-25T22:48:32,687 | ^~~~~~~~~ 2023-09-25T22:48:32,688 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:413:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,688 413 | char *fnName = "getRotationAngleLxB"; 2023-09-25T22:48:32,689 | ^~~~~~ 2023-09-25T22:48:32,689 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxL’: 2023-09-25T22:48:32,690 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:489:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T22:48:32,691 489 | short intersect = intersectLoopBulges(mobileLoop, staticStem, &staticBulgeIndex); 2023-09-25T22:48:32,691 | ^~~~~~~~~ 2023-09-25T22:48:32,692 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:477:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,692 477 | char *fnName = "getRotationAngleBxL"; 2023-09-25T22:48:32,693 | ^~~~~~ 2023-09-25T22:48:32,694 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxS’: 2023-09-25T22:48:32,695 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:541:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,695 541 | char *fnName = "getRotationAngleSxS"; 2023-09-25T22:48:32,696 | ^~~~~~ 2023-09-25T22:48:32,696 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxB’: 2023-09-25T22:48:32,697 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:567:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T22:48:32,697 567 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2023-09-25T22:48:32,698 | ^~~~~~~~~ 2023-09-25T22:48:32,698 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:560:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,699 560 | char *fnName = "getRotationAngleSxB"; 2023-09-25T22:48:32,699 | ^~~~~~ 2023-09-25T22:48:32,700 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxS’: 2023-09-25T22:48:32,700 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:612:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T22:48:32,701 612 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2023-09-25T22:48:32,701 | ^~~~~~~~~ 2023-09-25T22:48:32,702 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:605:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,702 605 | char *fnName = "getRotationAngleBxS"; 2023-09-25T22:48:32,703 | ^~~~~~ 2023-09-25T22:48:32,703 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxB’: 2023-09-25T22:48:32,704 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:660:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T22:48:32,704 660 | short intersect = intersectBulgesBulges(staticStem, 2023-09-25T22:48:32,705 | ^~~~~~~~~ 2023-09-25T22:48:32,705 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:650:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,706 650 | char *fnName = "getRotationAngleBxB"; 2023-09-25T22:48:32,706 | ^~~~~~ 2023-09-25T22:48:32,706 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_getRotationSign’: 2023-09-25T22:48:32,707 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘noIntersection’ not handled in switch [-Wswitch] 2023-09-25T22:48:32,708 64 | switch (it) { 2023-09-25T22:48:32,708 | ^~~~~~ 2023-09-25T22:48:32,709 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxL’ not handled in switch [-Wswitch] 2023-09-25T22:48:32,709 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxS’ not handled in switch [-Wswitch] 2023-09-25T22:48:32,710 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxL’ not handled in switch [-Wswitch] 2023-09-25T22:48:32,710 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxS’ not handled in switch [-Wswitch] 2023-09-25T22:48:32,711 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxB’ not handled in switch [-Wswitch] 2023-09-25T22:48:32,711 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxS’ not handled in switch [-Wswitch] 2023-09-25T22:48:32,712 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxB’ not handled in switch [-Wswitch] 2023-09-25T22:48:32,712 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘siblings’ not handled in switch [-Wswitch] 2023-09-25T22:48:32,713 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘exterior’ not handled in switch [-Wswitch] 2023-09-25T22:48:32,713 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:44:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,714 44 | char *fnName = "getRotationSign"; 2023-09-25T22:48:32,715 | ^~~~~~ 2023-09-25T22:48:32,715 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_getRotationSign’: 2023-09-25T22:48:32,716 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:105:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,716 105 | char *fnName = "getRotationSign"; 2023-09-25T22:48:32,717 | ^~~~~~ 2023-09-25T22:48:32,717 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘getRotationSign’: 2023-09-25T22:48:32,718 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:145:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,718 145 | char *fnName = "getRotationSign"; 2023-09-25T22:48:32,719 | ^~~~~~ 2023-09-25T22:48:32,719 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2023-09-25T22:48:32,720 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:222:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,720 222 | char *fnName = "fixIntersectionWithAncestor"; 2023-09-25T22:48:32,721 | ^~~~~~ 2023-09-25T22:48:32,721 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘handleIntersectionWithAncestor’: 2023-09-25T22:48:32,722 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:366:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,723 366 | char *fnName = "handleIntersectionWithAncestor"; 2023-09-25T22:48:32,723 | ^~~~~~ 2023-09-25T22:48:32,724 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_setupExteriorBoundingBoxes’: 2023-09-25T22:48:32,725 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:498:15: warning: unused variable ‘stemSouthX’ [-Wunused-variable] 2023-09-25T22:48:32,725 498 | double stemSouthX = loopX; 2023-09-25T22:48:32,726 | ^~~~~~~~~~ 2023-09-25T22:48:32,726 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:497:15: warning: unused variable ‘stemNorthX’ [-Wunused-variable] 2023-09-25T22:48:32,727 497 | double stemNorthX = loopX; 2023-09-25T22:48:32,727 | ^~~~~~~~~~ 2023-09-25T22:48:32,728 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:482:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,728 482 | char *fnName = "setupExteriorBoundingBoxes"; 2023-09-25T22:48:32,729 | ^~~~~~ 2023-09-25T22:48:32,729 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_setupExteriorBoundingBoxes’: 2023-09-25T22:48:32,730 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:625:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,731 625 | char *fnName = "setupExteriorBoundingBoxes"; 2023-09-25T22:48:32,731 | ^~~~~~ 2023-09-25T22:48:32,732 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE_setupExteriorBoundingBoxes’: 2023-09-25T22:48:32,733 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:715:21: warning: unused variable ‘it’ [-Wunused-variable] 2023-09-25T22:48:32,733 715 | intersectionType it = noIntersection; 2023-09-25T22:48:32,734 | ^~ 2023-09-25T22:48:32,734 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:695:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,735 695 | char *fnName = "setupExteriorBoundingBoxes"; 2023-09-25T22:48:32,735 | ^~~~~~ 2023-09-25T22:48:32,736 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘setupExteriorBoundingBoxes’: 2023-09-25T22:48:32,736 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:759:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,737 759 | char *fnName = "setupExteriorBoundingBoxes"; 2023-09-25T22:48:32,737 | ^~~~~~ 2023-09-25T22:48:32,738 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘checkNodeAgainstAncestors’: 2023-09-25T22:48:32,738 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:950:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,739 950 | char *fnName = "checkNodeAgainstAncestors"; 2023-09-25T22:48:32,739 | ^~~~~~ 2023-09-25T22:48:32,740 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc: In function ‘checkAndFixIntersections’: 2023-09-25T22:48:32,741 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:29:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,741 29 | char *fnName = "checkAndFixIntersections"; 2023-09-25T22:48:32,742 | ^~~~~~ 2023-09-25T22:48:32,742 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘checkRemainingIntersections’: 2023-09-25T22:48:32,743 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:75:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T22:48:32,743 75 | char *fnName = "checkRemainingIntersections"; 2023-09-25T22:48:32,744 | ^~~~~~ 2023-09-25T22:48:32,746 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘vrna_plot_coords_puzzler_pt’: 2023-09-25T22:48:32,746 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:505:13: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T22:48:32,747 505 | short intersect = checkRemainingIntersections(myX, 2023-09-25T22:48:32,748 | ^~~~~~~~~ 2023-09-25T22:48:32,748 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13: 2023-09-25T22:48:32,749 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc: At top level: 2023-09-25T22:48:32,749 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2023-09-25T22:48:32,750 126 | intToMotiv(const int _int); 2023-09-25T22:48:32,751 | ^~~~~~~~~~ 2023-09-25T22:48:32,751 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:16, 2023-09-25T22:48:32,752 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-09-25T22:48:32,753 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:135:1: warning: ‘printLBox’ declared ‘static’ but never defined [-Wunused-function] 2023-09-25T22:48:32,753 135 | printLBox(const loopBox *loop); 2023-09-25T22:48:32,754 | ^~~~~~~~~ 2023-09-25T22:48:32,754 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:139:1: warning: ‘printSBox’ declared ‘static’ but never defined [-Wunused-function] 2023-09-25T22:48:32,755 139 | printSBox(const stemBox *stem); 2023-09-25T22:48:32,756 | ^~~~~~~~~ 2023-09-25T22:48:32,756 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:224:1: warning: ‘printTree’ declared ‘static’ but never defined [-Wunused-function] 2023-09-25T22:48:32,757 224 | printTree(const treeNode *node, 2023-09-25T22:48:32,757 | ^~~~~~~~~ 2023-09-25T22:48:32,824 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:21: 2023-09-25T22:48:32,824 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:482:1: warning: ‘resolveExteriorChildIntersections’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,825 482 | resolveExteriorChildIntersections(treeNode *exteriorNode, 2023-09-25T22:48:32,825 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:32,826 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:305:1: warning: ‘resolveExteriorChildrenIntersectionAffin’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,826 305 | resolveExteriorChildrenIntersectionAffin(treeNode *exteriorNode, 2023-09-25T22:48:32,826 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:32,827 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:754:1: warning: ‘setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,827 754 | setupExteriorBoundingBoxes(treeNode *exterior, 2023-09-25T22:48:32,828 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:32,828 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:690:1: warning: ‘TENTATIVE_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,829 690 | TENTATIVE_setupExteriorBoundingBoxes(treeNode *exterior, 2023-09-25T22:48:32,829 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:32,830 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:620:1: warning: ‘TENTATIVE2_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,831 620 | TENTATIVE2_setupExteriorBoundingBoxes(treeNode *exterior, 2023-09-25T22:48:32,831 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:32,832 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:142:1: warning: ‘getRotationSign’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,832 142 | getRotationSign(const treeNode **const path, 2023-09-25T22:48:32,833 | ^~~~~~~~~~~~~~~ 2023-09-25T22:48:32,834 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:40:1: warning: ‘TENTATIVE3_getRotationSign’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,834 40 | TENTATIVE3_getRotationSign(treeNode **const path, 2023-09-25T22:48:32,835 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:32,835 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:111:1: warning: ‘checkBounds’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,836 111 | checkBounds(const double l1, 2023-09-25T22:48:32,837 | ^~~~~~~~~~~ 2023-09-25T22:48:32,838 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:471:1: warning: ‘TestLoopBulge’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,838 471 | TestLoopBulge(const double c[2], 2023-09-25T22:48:32,839 | ^~~~~~~~~~~~~ 2023-09-25T22:48:32,840 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:207:1: warning: ‘ClosestPtPointTriangle’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,840 207 | ClosestPtPointTriangle(const double p[2], 2023-09-25T22:48:32,841 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:32,842 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1056:1: warning: ‘getChildNode’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,842 1056 | getChildNode(treeNode *tree, 2023-09-25T22:48:32,843 | ^~~~~~~~~~~~ 2023-09-25T22:48:32,843 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1038:1: warning: ‘getStemCenter’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,844 1038 | getStemCenter(const treeNode *node, 2023-09-25T22:48:32,844 | ^~~~~~~~~~~~~ 2023-09-25T22:48:32,845 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:569:1: warning: ‘getExterior’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,845 569 | getExterior(treeNode *node) 2023-09-25T22:48:32,846 | ^~~~~~~~~~~ 2023-09-25T22:48:32,846 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:537:1: warning: ‘getPairedAngle’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,847 537 | getPairedAngle(const treeNode *node) 2023-09-25T22:48:32,847 | ^~~~~~~~~~~~~~ 2023-09-25T22:48:32,848 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:235:1: warning: ‘rotateStemBox’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,848 235 | rotateStemBox(stemBox *box, 2023-09-25T22:48:32,849 | ^~~~~~~~~~~~~ 2023-09-25T22:48:32,849 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:203:1: warning: ‘rotateLoopBox’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,850 203 | rotateLoopBox(loopBox *box, 2023-09-25T22:48:32,850 | ^~~~~~~~~~~~~ 2023-09-25T22:48:32,851 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,851 243 | getArcAngleDegree(const config *cfg, 2023-09-25T22:48:32,852 | ^~~~~~~~~~~~~~~~~ 2023-09-25T22:48:32,852 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,853 216 | cfgPrintConfig(config *cfg) 2023-09-25T22:48:32,853 | ^~~~~~~~~~~~~~ 2023-09-25T22:48:32,854 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,855 827 | sign(const double number) 2023-09-25T22:48:32,855 | ^~~~ 2023-09-25T22:48:32,856 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,857 816 | min(const double number1, 2023-09-25T22:48:32,857 | ^~~ 2023-09-25T22:48:32,858 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,859 530 | normalizeAngle(const double angle, 2023-09-25T22:48:32,860 | ^~~~~~~~~~~~~~ 2023-09-25T22:48:32,860 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14: 2023-09-25T22:48:32,861 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-09-25T22:48:32,861 116 | angleToDistance(const double radius, 2023-09-25T22:48:32,862 | ^~~~~~~~~~~~~~~ 2023-09-25T22:48:37,010 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2023-09-25T22:48:37,010 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:255:12: warning: ‘interiorChildAngle’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:48:37,011 255 | double diffToStraight = MATH_PI - interiorChildAngle; 2023-09-25T22:48:37,012 | ^~~~~~~~~~~~~~ 2023-09-25T22:48:37,013 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:228:10: note: ‘interiorChildAngle’ was declared here 2023-09-25T22:48:37,013 228 | double interiorChildAngle; 2023-09-25T22:48:37,014 | ^~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:38,594 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler/RNAturtle.o -fopenmp 2023-09-25T22:48:38,749 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-09-25T22:48:38,750 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-09-25T22:48:38,750 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:40: warning: argument 1 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T22:48:38,751 470 | isToTheRightPointVector(const double *lineStart, 2023-09-25T22:48:38,751 | ~~~~~~~~~~~~~~~^~~~~~~~~ 2023-09-25T22:48:38,752 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:102:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T22:48:38,752 102 | isToTheRightPointVector(const double lineStart[2], 2023-09-25T22:48:38,752 | ~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T22:48:38,753 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:471:40: warning: argument 2 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T22:48:38,753 471 | const double *lineVector, 2023-09-25T22:48:38,754 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2023-09-25T22:48:38,755 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:103:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T22:48:38,755 103 | const double lineVector[2], 2023-09-25T22:48:38,756 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2023-09-25T22:48:38,756 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:472:40: warning: argument 3 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T22:48:38,757 472 | const double *point) 2023-09-25T22:48:38,758 | ~~~~~~~~~~~~~~~^~~~~ 2023-09-25T22:48:38,759 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:104:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T22:48:38,759 104 | const double point[2]); 2023-09-25T22:48:38,760 | ~~~~~~~~~~~~~~^~~~~~~~ 2023-09-25T22:48:38,767 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-09-25T22:48:38,768 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:38,768 846 | double alpha[3]; 2023-09-25T22:48:38,769 | ^~~~~ 2023-09-25T22:48:38,798 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13: 2023-09-25T22:48:38,798 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc: At top level: 2023-09-25T22:48:38,799 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2023-09-25T22:48:38,800 126 | intToMotiv(const int _int); 2023-09-25T22:48:38,800 | ^~~~~~~~~~ 2023-09-25T22:48:38,814 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:705:1: warning: ‘cfgIsValid’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,815 705 | cfgIsValid(config *cfg, 2023-09-25T22:48:38,815 | ^~~~~~~~~~ 2023-09-25T22:48:38,816 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:648:1: warning: ‘cfgApplyChanges’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,817 648 | cfgApplyChanges(config *cfg, 2023-09-25T22:48:38,818 | ^~~~~~~~~~~~~~~ 2023-09-25T22:48:38,818 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,819 243 | getArcAngleDegree(const config *cfg, 2023-09-25T22:48:38,819 | ^~~~~~~~~~~~~~~~~ 2023-09-25T22:48:38,820 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,820 216 | cfgPrintConfig(config *cfg) 2023-09-25T22:48:38,821 | ^~~~~~~~~~~~~~ 2023-09-25T22:48:38,821 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:207:1: warning: ‘cfgFreeConfig’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,822 207 | cfgFreeConfig(config *cfg) 2023-09-25T22:48:38,822 | ^~~~~~~~~~~~~ 2023-09-25T22:48:38,823 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:184:1: warning: ‘cfgCloneConfig’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,823 184 | cfgCloneConfig(const config *cfg) 2023-09-25T22:48:38,824 | ^~~~~~~~~~~~~~ 2023-09-25T22:48:38,824 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,825 827 | sign(const double number) 2023-09-25T22:48:38,825 | ^~~~ 2023-09-25T22:48:38,826 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,827 816 | min(const double number1, 2023-09-25T22:48:38,827 | ^~~ 2023-09-25T22:48:38,828 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:788:1: warning: ‘normal’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,829 788 | normal(const double v[2], 2023-09-25T22:48:38,829 | ^~~~~~ 2023-09-25T22:48:38,830 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:747:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,831 747 | getCutPointsOfCircleAndLine(const double *center, 2023-09-25T22:48:38,831 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:38,832 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:632:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,833 632 | getCutPointsOfCircles(const double *c1, 2023-09-25T22:48:38,834 | ^~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:38,834 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:592:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,835 592 | translatePointByVector(const double *point, 2023-09-25T22:48:38,836 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:38,836 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:579:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,837 579 | rotateVectorByAngle(const double *vector, 2023-09-25T22:48:38,838 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:38,838 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,839 530 | normalizeAngle(const double angle, 2023-09-25T22:48:38,840 | ^~~~~~~~~~~~~~ 2023-09-25T22:48:38,840 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:514:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,841 514 | anglePtPtPt2D(const double *p1, 2023-09-25T22:48:38,842 | ^~~~~~~~~~~~~ 2023-09-25T22:48:38,842 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,843 470 | isToTheRightPointVector(const double *lineStart, 2023-09-25T22:48:38,844 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:38,845 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:383:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,845 383 | vectorLength2DSquared(const double vector[2]) 2023-09-25T22:48:38,846 | ^~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:38,846 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:366:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,846 366 | toRad(double angle) 2023-09-25T22:48:38,847 | ^~~~~ 2023-09-25T22:48:38,847 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14: 2023-09-25T22:48:38,848 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,848 116 | angleToDistance(const double radius, 2023-09-25T22:48:38,849 | ^~~~~~~~~~~~~~~ 2023-09-25T22:48:38,849 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,850 108 | distanceToAngle(const double radius, 2023-09-25T22:48:38,850 | ^~~~~~~~~~~~~~~ 2023-09-25T22:48:38,851 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2023-09-25T22:48:38,851 62 | bubblesort(const int numValues, 2023-09-25T22:48:38,852 | ^~~~~~~~~~ 2023-09-25T22:48:39,821 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/alignments.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/alignments.o -fopenmp 2023-09-25T22:48:40,134 src/ViennaRNA/plotting/alignments.c: In function ‘vrna_file_PS_aln_slice’: 2023-09-25T22:48:40,135 src/ViennaRNA/plotting/alignments.c:147:34: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T22:48:40,136 147 | columnWidth = (columns == 0) ? length : columns; 2023-09-25T22:48:40,136 | ^~~~~~ 2023-09-25T22:48:40,137 src/ViennaRNA/plotting/alignments.c:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:40,138 245 | for (i = start; i <= end; i++) { 2023-09-25T22:48:40,138 | ^~ 2023-09-25T22:48:40,139 src/ViennaRNA/plotting/alignments.c:247:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:40,140 247 | if ((j > i) && (j <= end)) { 2023-09-25T22:48:40,140 | ^~ 2023-09-25T22:48:40,141 src/ViennaRNA/plotting/alignments.c:327:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:40,142 327 | if (length - currPos < max_len) 2023-09-25T22:48:40,142 | ^ 2023-09-25T22:48:40,143 src/ViennaRNA/plotting/alignments.c:334:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:48:40,143 334 | for (j = 0; j < (currPos + strlen(tmpBuffer)); j++) 2023-09-25T22:48:40,144 | ^ 2023-09-25T22:48:40,155 In file included from src/ViennaRNA/plotting/alignments.c:26: 2023-09-25T22:48:40,155 src/ViennaRNA/plotting/ps_helpers.inc: At top level: 2023-09-25T22:48:40,156 src/ViennaRNA/plotting/ps_helpers.inc:134:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2023-09-25T22:48:40,157 134 | print_PS_coords(FILE *fh, 2023-09-25T22:48:40,158 | ^~~~~~~~~~~~~~~ 2023-09-25T22:48:40,158 src/ViennaRNA/plotting/ps_helpers.inc:114:1: warning: ‘print_PS_sequence’ defined but not used [-Wunused-function] 2023-09-25T22:48:40,159 114 | print_PS_sequence(FILE *fh, 2023-09-25T22:48:40,159 | ^~~~~~~~~~~~~~~~~ 2023-09-25T22:48:40,685 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/layouts.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/layouts.o -fopenmp 2023-09-25T22:48:40,937 src/ViennaRNA/plotting/layouts.c: In function ‘simple_xy_coordinates’: 2023-09-25T22:48:40,937 src/ViennaRNA/plotting/layouts.c:547:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:40,938 547 | int ret, n; 2023-09-25T22:48:40,939 | ^~~ 2023-09-25T22:48:40,940 src/ViennaRNA/plotting/layouts.c: In function ‘simple_circplot_coordinates’: 2023-09-25T22:48:40,941 src/ViennaRNA/plotting/layouts.c:570:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:40,941 570 | int ret, n; 2023-09-25T22:48:40,942 | ^~~ 2023-09-25T22:48:41,460 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/naview/naview.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/naview/naview.o -fopenmp 2023-09-25T22:48:42,539 In function ‘determine_radius’, 2023-09-25T22:48:42,540 inlined from ‘traverse_loop’ at src/ViennaRNA/plotting/naview/naview.c:569:3: 2023-09-25T22:48:42,541 src/ViennaRNA/plotting/naview/naview.c:963:22: warning: ‘imindit’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:48:42,541 963 | lp->connections[imindit]->extruded = true; 2023-09-25T22:48:42,542 | ^ 2023-09-25T22:48:42,543 src/ViennaRNA/plotting/naview/naview.c: In function ‘traverse_loop’: 2023-09-25T22:48:42,543 src/ViennaRNA/plotting/naview/naview.c:928:21: note: ‘imindit’ was declared here 2023-09-25T22:48:42,544 928 | int i,j,end,start,imindit; 2023-09-25T22:48:42,545 | ^~~~~~~ 2023-09-25T22:48:42,546 src/ViennaRNA/plotting/naview/naview.c:629:27: warning: ‘imaxloop’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:48:42,546 629 | cp = lp->connections[icend]; 2023-09-25T22:48:42,547 | ^ 2023-09-25T22:48:42,547 src/ViennaRNA/plotting/naview/naview.c:540:7: note: ‘imaxloop’ was declared here 2023-09-25T22:48:42,548 540 | int imaxloop; 2023-09-25T22:48:42,549 | ^~~~~~~~ 2023-09-25T22:48:43,298 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/plot_utils.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/plot_utils.o -fopenmp 2023-09-25T22:48:43,432 src/ViennaRNA/plotting/plot_utils.c: In function ‘vrna_annotate_covar_pairs’: 2023-09-25T22:48:43,433 src/ViennaRNA/plotting/plot_utils.c:205:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:43,434 205 | for (s = 0; s < n_seq; s++) { 2023-09-25T22:48:43,435 | ^ 2023-09-25T22:48:43,772 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/probabilities.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/probabilities.o -fopenmp 2023-09-25T22:48:44,130 src/ViennaRNA/plotting/probabilities.c: In function ‘vrna_plot_dp_EPS’: 2023-09-25T22:48:44,131 src/ViennaRNA/plotting/probabilities.c:296:62: warning: variable ‘linright_num’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:44,131 296 | linbottom_size, linleft_num, linleft_size, linright_num, 2023-09-25T22:48:44,132 | ^~~~~~~~~~~~ 2023-09-25T22:48:44,132 src/ViennaRNA/plotting/probabilities.c:296:35: warning: variable ‘linleft_num’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:44,133 296 | linbottom_size, linleft_num, linleft_size, linright_num, 2023-09-25T22:48:44,133 | ^~~~~~~~~~~ 2023-09-25T22:48:44,134 src/ViennaRNA/plotting/probabilities.c:295:47: warning: variable ‘linbottom_num’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:44,134 295 | int i, lintop_num, lintop_size, linbottom_num, 2023-09-25T22:48:44,135 | ^~~~~~~~~~~~~ 2023-09-25T22:48:44,135 src/ViennaRNA/plotting/probabilities.c:295:22: warning: variable ‘lintop_num’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:44,136 295 | int i, lintop_num, lintop_size, linbottom_num, 2023-09-25T22:48:44,137 | ^~~~~~~~~~ 2023-09-25T22:48:44,143 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_accessibility’: 2023-09-25T22:48:44,144 src/ViennaRNA/plotting/probabilities.c:847:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:44,145 847 | for(i = 0; i < length; i++){ 2023-09-25T22:48:44,145 | ^ 2023-09-25T22:48:44,146 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_ud_motif_prob’: 2023-09-25T22:48:44,147 src/ViennaRNA/plotting/probabilities.c:880:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:48:44,147 880 | for(i = 0; i < actual_length; i++, actual_pos++){ 2023-09-25T22:48:44,148 | ^ 2023-09-25T22:48:44,170 In file included from src/ViennaRNA/plotting/probabilities.c:28: 2023-09-25T22:48:44,170 src/ViennaRNA/plotting/ps_helpers.inc: At top level: 2023-09-25T22:48:44,171 src/ViennaRNA/plotting/ps_helpers.inc:134:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2023-09-25T22:48:44,172 134 | print_PS_coords(FILE *fh, 2023-09-25T22:48:44,172 | ^~~~~~~~~~~~~~~ 2023-09-25T22:48:45,385 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/structures.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/structures.o -fopenmp 2023-09-25T22:48:45,642 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/svgArcs.inc:14, 2023-09-25T22:48:45,643 from src/ViennaRNA/plotting/structures.c:28: 2023-09-25T22:48:45,643 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:40: warning: argument 1 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T22:48:45,644 470 | isToTheRightPointVector(const double *lineStart, 2023-09-25T22:48:45,645 | ~~~~~~~~~~~~~~~^~~~~~~~~ 2023-09-25T22:48:45,645 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:102:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T22:48:45,646 102 | isToTheRightPointVector(const double lineStart[2], 2023-09-25T22:48:45,647 | ~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T22:48:45,647 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:471:40: warning: argument 2 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T22:48:45,648 471 | const double *lineVector, 2023-09-25T22:48:45,648 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2023-09-25T22:48:45,649 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:103:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T22:48:45,649 103 | const double lineVector[2], 2023-09-25T22:48:45,650 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2023-09-25T22:48:45,650 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:472:40: warning: argument 3 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T22:48:45,651 472 | const double *point) 2023-09-25T22:48:45,651 | ~~~~~~~~~~~~~~~^~~~~ 2023-09-25T22:48:45,652 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:104:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T22:48:45,653 104 | const double point[2]); 2023-09-25T22:48:45,653 | ~~~~~~~~~~~~~~^~~~~~~~ 2023-09-25T22:48:45,654 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-09-25T22:48:45,654 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:45,655 846 | double alpha[3]; 2023-09-25T22:48:45,655 | ^~~~~ 2023-09-25T22:48:45,770 src/ViennaRNA/plotting/structures.c: In function ‘rnaplot_EPS’: 2023-09-25T22:48:45,771 src/ViennaRNA/plotting/structures.c:171:18: warning: unused variable ‘Y’ [-Wunused-variable] 2023-09-25T22:48:45,772 171 | float *X, *Y; 2023-09-25T22:48:45,772 | ^ 2023-09-25T22:48:45,773 src/ViennaRNA/plotting/structures.c:171:14: warning: unused variable ‘X’ [-Wunused-variable] 2023-09-25T22:48:45,774 171 | float *X, *Y; 2023-09-25T22:48:45,774 | ^ 2023-09-25T22:48:45,775 src/ViennaRNA/plotting/structures.c:168:31: warning: unused variable ‘ymax’ [-Wunused-variable] 2023-09-25T22:48:45,775 168 | float xmin, xmax, ymin, ymax; 2023-09-25T22:48:45,776 | ^~~~ 2023-09-25T22:48:45,777 src/ViennaRNA/plotting/structures.c:168:25: warning: unused variable ‘ymin’ [-Wunused-variable] 2023-09-25T22:48:45,777 168 | float xmin, xmax, ymin, ymax; 2023-09-25T22:48:45,778 | ^~~~ 2023-09-25T22:48:45,778 src/ViennaRNA/plotting/structures.c:168:19: warning: unused variable ‘xmax’ [-Wunused-variable] 2023-09-25T22:48:45,779 168 | float xmin, xmax, ymin, ymax; 2023-09-25T22:48:45,780 | ^~~~ 2023-09-25T22:48:45,780 src/ViennaRNA/plotting/structures.c:168:13: warning: unused variable ‘xmin’ [-Wunused-variable] 2023-09-25T22:48:45,781 168 | float xmin, xmax, ymin, ymax; 2023-09-25T22:48:45,781 | ^~~~ 2023-09-25T22:48:45,784 src/ViennaRNA/plotting/structures.c: In function ‘PS_rna_plot_snoop_a’: 2023-09-25T22:48:45,784 src/ViennaRNA/plotting/structures.c:631:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:48:45,785 631 | if (cut_point > 0 && cut_point <= strlen(string)) 2023-09-25T22:48:45,786 | ^~ 2023-09-25T22:48:45,819 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: At top level: 2023-09-25T22:48:45,820 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:839:1: warning: ‘circle’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,820 839 | circle(const double P1[2], 2023-09-25T22:48:45,820 | ^~~~~~ 2023-09-25T22:48:45,821 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,821 827 | sign(const double number) 2023-09-25T22:48:45,822 | ^~~~ 2023-09-25T22:48:45,822 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,823 816 | min(const double number1, 2023-09-25T22:48:45,823 | ^~~ 2023-09-25T22:48:45,824 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:788:1: warning: ‘normal’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,824 788 | normal(const double v[2], 2023-09-25T22:48:45,825 | ^~~~~~ 2023-09-25T22:48:45,825 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:778:1: warning: ‘vector’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,826 778 | vector(const double pStart[2], 2023-09-25T22:48:45,826 | ^~~~~~ 2023-09-25T22:48:45,827 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:747:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,828 747 | getCutPointsOfCircleAndLine(const double *center, 2023-09-25T22:48:45,828 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:45,829 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:632:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,830 632 | getCutPointsOfCircles(const double *c1, 2023-09-25T22:48:45,830 | ^~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:45,831 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:592:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,831 592 | translatePointByVector(const double *point, 2023-09-25T22:48:45,832 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:45,832 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:579:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,833 579 | rotateVectorByAngle(const double *vector, 2023-09-25T22:48:45,834 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:45,834 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,835 530 | normalizeAngle(const double angle, 2023-09-25T22:48:45,836 | ^~~~~~~~~~~~~~ 2023-09-25T22:48:45,836 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:514:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,837 514 | anglePtPtPt2D(const double *p1, 2023-09-25T22:48:45,837 | ^~~~~~~~~~~~~ 2023-09-25T22:48:45,838 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,839 470 | isToTheRightPointVector(const double *lineStart, 2023-09-25T22:48:45,839 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:45,840 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:383:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,841 383 | vectorLength2DSquared(const double vector[2]) 2023-09-25T22:48:45,842 | ^~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:48:45,842 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:366:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,843 366 | toRad(double angle) 2023-09-25T22:48:45,844 | ^~~~~ 2023-09-25T22:48:45,844 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:359:1: warning: ‘toDegree’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,845 359 | toDegree(double angle) 2023-09-25T22:48:45,845 | ^~~~~~~~ 2023-09-25T22:48:45,846 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14: 2023-09-25T22:48:45,846 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,847 116 | angleToDistance(const double radius, 2023-09-25T22:48:45,847 | ^~~~~~~~~~~~~~~ 2023-09-25T22:48:45,848 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,848 108 | distanceToAngle(const double radius, 2023-09-25T22:48:45,849 | ^~~~~~~~~~~~~~~ 2023-09-25T22:48:45,849 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2023-09-25T22:48:45,850 62 | bubblesort(const int numValues, 2023-09-25T22:48:45,850 | ^~~~~~~~~~ 2023-09-25T22:48:47,125 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/ribo.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ribo.o -fopenmp 2023-09-25T22:48:48,762 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/search/BoyerMoore.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/search/BoyerMoore.o -fopenmp 2023-09-25T22:48:49,144 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/sequence.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sequence.o -fopenmp 2023-09-25T22:48:50,017 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/snofold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/snofold.o -fopenmp 2023-09-25T22:48:50,251 src/ViennaRNA/snofold.c: In function ‘snofold’: 2023-09-25T22:48:50,252 src/ViennaRNA/snofold.c:369:30: warning: variable ‘bonus_cnt’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:50,253 369 | int length, energy, bonus, bonus_cnt, s; 2023-09-25T22:48:50,253 | ^~~~~~~~~ 2023-09-25T22:48:50,254 src/ViennaRNA/snofold.c:369:23: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:50,254 369 | int length, energy, bonus, bonus_cnt, s; 2023-09-25T22:48:50,255 | ^~~~~ 2023-09-25T22:48:50,258 src/ViennaRNA/snofold.c: In function ‘alisnofold’: 2023-09-25T22:48:50,258 src/ViennaRNA/snofold.c:571:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:48:50,259 571 | if (strlen(strings[s]) != length) 2023-09-25T22:48:50,260 | ^~ 2023-09-25T22:48:50,263 src/ViennaRNA/snofold.c: In function ‘alifill_arrays’: 2023-09-25T22:48:50,264 src/ViennaRNA/snofold.c:603:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:50,265 603 | int bonus, n_seq, s; 2023-09-25T22:48:50,265 | ^~~~~ 2023-09-25T22:48:50,268 src/ViennaRNA/snofold.c: In function ‘alibacktrack’: 2023-09-25T22:48:50,269 src/ViennaRNA/snofold.c:767:34: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:50,269 767 | int ml, ss, cij, traced, i1, j1, p, q; 2023-09-25T22:48:50,270 | ^~ 2023-09-25T22:48:50,270 src/ViennaRNA/snofold.c:767:30: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:50,271 767 | int ml, ss, cij, traced, i1, j1, p, q; 2023-09-25T22:48:50,271 | ^~ 2023-09-25T22:48:50,272 src/ViennaRNA/snofold.c:754:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:50,272 754 | int bonus, n_seq, *type; 2023-09-25T22:48:50,273 | ^~~~~ 2023-09-25T22:48:50,280 src/ViennaRNA/snofold.c: In function ‘backtrack’: 2023-09-25T22:48:50,281 src/ViennaRNA/snofold.c:1132:30: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:50,282 1132 | int ml, cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2023-09-25T22:48:50,282 | ^~ 2023-09-25T22:48:50,283 src/ViennaRNA/snofold.c:1132:26: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:50,283 1132 | int ml, cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2023-09-25T22:48:50,284 | ^~ 2023-09-25T22:48:50,284 src/ViennaRNA/snofold.c: In function ‘alisnobacktrack_fold_from_pair’: 2023-09-25T22:48:50,285 src/ViennaRNA/snofold.c:1290:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T22:48:50,285 1290 | if (strlen(strings[s]) != length) 2023-09-25T22:48:50,286 | ^~ 2023-09-25T22:48:50,318 src/ViennaRNA/snofold.c: At top level: 2023-09-25T22:48:50,319 src/ViennaRNA/snofold.c:154:15: warning: ‘alpha’ defined but not used [-Wunused-variable] 2023-09-25T22:48:50,319 154 | PRIVATE char alpha[] = "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz"; 2023-09-25T22:48:50,320 | ^~~~~ 2023-09-25T22:48:52,727 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/snoop.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/snoop.o -fopenmp 2023-09-25T22:48:52,976 src/ViennaRNA/snoop.c: In function ‘alisnoopfold’: 2023-09-25T22:48:52,977 src/ViennaRNA/snoop.c:249:22: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:52,978 249 | int i, j, E, l1, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T22:48:52,978 | ^~ 2023-09-25T22:48:52,988 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack’: 2023-09-25T22:48:52,988 src/ViennaRNA/snoop.c:836:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:52,989 836 | int min_k, max_k; 2023-09-25T22:48:52,989 | ^~~~~ 2023-09-25T22:48:52,990 src/ViennaRNA/snoop.c:836:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:52,991 836 | int min_k, max_k; 2023-09-25T22:48:52,992 | ^~~~~ 2023-09-25T22:48:53,003 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt’: 2023-09-25T22:48:53,004 src/ViennaRNA/snoop.c:1141:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,005 1141 | int Loop_E; 2023-09-25T22:48:53,005 | ^~~~~~ 2023-09-25T22:48:53,006 src/ViennaRNA/snoop.c:1139:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,006 1139 | int Loop_D; 2023-09-25T22:48:53,006 | ^~~~~~ 2023-09-25T22:48:53,007 src/ViennaRNA/snoop.c:1138:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,007 1138 | int Duplex_El, Duplex_Er; 2023-09-25T22:48:53,007 | ^~~~~~~~~ 2023-09-25T22:48:53,008 src/ViennaRNA/snoop.c:1138:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,008 1138 | int Duplex_El, Duplex_Er; 2023-09-25T22:48:53,009 | ^~~~~~~~~ 2023-09-25T22:48:53,009 src/ViennaRNA/snoop.c:1112:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,010 1112 | int max_pos; 2023-09-25T22:48:53,010 | ^~~~~~~ 2023-09-25T22:48:53,013 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list’: 2023-09-25T22:48:53,014 src/ViennaRNA/snoop.c:1433:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,015 1433 | int min_k, max_k; 2023-09-25T22:48:53,015 | ^~~~~ 2023-09-25T22:48:53,016 src/ViennaRNA/snoop.c:1433:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,017 1433 | int min_k, max_k; 2023-09-25T22:48:53,017 | ^~~~~ 2023-09-25T22:48:53,022 src/ViennaRNA/snoop.c:1376:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,023 1376 | int Loop_E; 2023-09-25T22:48:53,023 | ^~~~~~ 2023-09-25T22:48:53,024 src/ViennaRNA/snoop.c:1374:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,025 1374 | int Loop_D; 2023-09-25T22:48:53,025 | ^~~~~~ 2023-09-25T22:48:53,026 src/ViennaRNA/snoop.c:1373:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,026 1373 | int Duplex_El, Duplex_Er; 2023-09-25T22:48:53,027 | ^~~~~~~~~ 2023-09-25T22:48:53,028 src/ViennaRNA/snoop.c:1373:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,028 1373 | int Duplex_El, Duplex_Er; 2023-09-25T22:48:53,029 | ^~~~~~~~~ 2023-09-25T22:48:53,029 src/ViennaRNA/snoop.c:1347:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,030 1347 | int max_pos; 2023-09-25T22:48:53,031 | ^~~~~~~ 2023-09-25T22:48:53,036 src/ViennaRNA/snoop.c: In function ‘snoopfold’: 2023-09-25T22:48:53,037 src/ViennaRNA/snoop.c:1818:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,038 1818 | int min_k, max_k; 2023-09-25T22:48:53,038 | ^~~~~ 2023-09-25T22:48:53,039 src/ViennaRNA/snoop.c:1818:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,040 1818 | int min_k, max_k; 2023-09-25T22:48:53,040 | ^~~~~ 2023-09-25T22:48:53,044 src/ViennaRNA/snoop.c:1764:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,045 1764 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T22:48:53,046 | ^~ 2023-09-25T22:48:53,050 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS_fill’: 2023-09-25T22:48:53,051 src/ViennaRNA/snoop.c:2015:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,052 2015 | int min_k, max_k; 2023-09-25T22:48:53,052 | ^~~~~ 2023-09-25T22:48:53,053 src/ViennaRNA/snoop.c:2015:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,054 2015 | int min_k, max_k; 2023-09-25T22:48:53,054 | ^~~~~ 2023-09-25T22:48:53,058 src/ViennaRNA/snoop.c:1959:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,058 1959 | int Loop_E; 2023-09-25T22:48:53,058 | ^~~~~~ 2023-09-25T22:48:53,059 src/ViennaRNA/snoop.c:1957:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,060 1957 | int Loop_D; 2023-09-25T22:48:53,060 | ^~~~~~ 2023-09-25T22:48:53,061 src/ViennaRNA/snoop.c:1956:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,061 1956 | int Duplex_El, Duplex_Er; 2023-09-25T22:48:53,062 | ^~~~~~~~~ 2023-09-25T22:48:53,063 src/ViennaRNA/snoop.c:1956:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,063 1956 | int Duplex_El, Duplex_Er; 2023-09-25T22:48:53,064 | ^~~~~~~~~ 2023-09-25T22:48:53,065 src/ViennaRNA/snoop.c:1947:42: warning: variable ‘j_min’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,065 1947 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T22:48:53,066 | ^~~~~ 2023-09-25T22:48:53,067 src/ViennaRNA/snoop.c:1947:31: warning: variable ‘i_min’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,067 1947 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T22:48:53,068 | ^~~~~ 2023-09-25T22:48:53,071 src/ViennaRNA/snoop.c: In function ‘snoop_subopt’: 2023-09-25T22:48:53,073 src/ViennaRNA/snoop.c:2102:25: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,074 2102 | int i, j, n1, n2, E, n_subopt = 0, n_max; 2023-09-25T22:48:53,075 | ^ 2023-09-25T22:48:53,080 src/ViennaRNA/snoop.c: In function ‘snoop_subopt_XS’: 2023-09-25T22:48:53,082 src/ViennaRNA/snoop.c:2437:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,083 2437 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2023-09-25T22:48:53,083 | ^~~~ 2023-09-25T22:48:53,085 src/ViennaRNA/snoop.c:2437:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,085 2437 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2023-09-25T22:48:53,086 | ^~~ 2023-09-25T22:48:53,087 src/ViennaRNA/snoop.c:2304:7: warning: variable ‘u’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,088 2304 | int u; 2023-09-25T22:48:53,088 | ^ 2023-09-25T22:48:53,089 src/ViennaRNA/snoop.c:2298:7: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,090 2298 | int Loop_D; 2023-09-25T22:48:53,091 | ^~~~~~ 2023-09-25T22:48:53,092 src/ViennaRNA/snoop.c:2297:29: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,092 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-09-25T22:48:53,093 | ^~~~~~ 2023-09-25T22:48:53,094 src/ViennaRNA/snoop.c:2297:18: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,095 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-09-25T22:48:53,095 | ^~~~~~~~~ 2023-09-25T22:48:53,096 src/ViennaRNA/snoop.c:2297:7: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,096 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-09-25T22:48:53,097 | ^~~~~~~~~ 2023-09-25T22:48:53,098 src/ViennaRNA/snoop.c:2289:16: warning: variable ‘n_max’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,099 2289 | int i, j, E, n_max; 2023-09-25T22:48:53,099 | ^~~~~ 2023-09-25T22:48:53,100 src/ViennaRNA/snoop.c:2289:13: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,101 2289 | int i, j, E, n_max; 2023-09-25T22:48:53,101 | ^ 2023-09-25T22:48:53,106 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack’: 2023-09-25T22:48:53,108 src/ViennaRNA/snoop.c:2588:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,109 2588 | int min_k, max_k; 2023-09-25T22:48:53,109 | ^~~~~ 2023-09-25T22:48:53,110 src/ViennaRNA/snoop.c:2588:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,111 2588 | int min_k, max_k; 2023-09-25T22:48:53,111 | ^~~~~ 2023-09-25T22:48:53,123 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2023-09-25T22:48:53,126 src/ViennaRNA/snoop.c:2904:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,127 2904 | int min_k, max_k; 2023-09-25T22:48:53,127 | ^~~~~ 2023-09-25T22:48:53,129 src/ViennaRNA/snoop.c:2904:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,129 2904 | int min_k, max_k; 2023-09-25T22:48:53,130 | ^~~~~ 2023-09-25T22:48:53,136 src/ViennaRNA/snoop.c:2839:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,137 2839 | int Loop_E; 2023-09-25T22:48:53,137 | ^~~~~~ 2023-09-25T22:48:53,139 src/ViennaRNA/snoop.c:2837:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,140 2837 | int Loop_D; 2023-09-25T22:48:53,140 | ^~~~~~ 2023-09-25T22:48:53,142 src/ViennaRNA/snoop.c:2836:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,142 2836 | int Duplex_El, Duplex_Er; 2023-09-25T22:48:53,143 | ^~~~~~~~~ 2023-09-25T22:48:53,144 src/ViennaRNA/snoop.c:2836:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,145 2836 | int Duplex_El, Duplex_Er; 2023-09-25T22:48:53,145 | ^~~~~~~~~ 2023-09-25T22:48:53,147 src/ViennaRNA/snoop.c:2821:7: warning: variable ‘max_pos_j’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,148 2821 | int max_pos_j = INF; 2023-09-25T22:48:53,148 | ^~~~~~~~~ 2023-09-25T22:48:53,150 src/ViennaRNA/snoop.c:2807:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,150 2807 | int max_pos; 2023-09-25T22:48:53,151 | ^~~~~~~ 2023-09-25T22:48:53,156 src/ViennaRNA/snoop.c: In function ‘find_max_snoop_XS’: 2023-09-25T22:48:53,159 src/ViennaRNA/snoop.c:3152:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,160 3152 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2023-09-25T22:48:53,160 | ^~~~ 2023-09-25T22:48:53,162 src/ViennaRNA/snoop.c:3152:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:48:53,163 3152 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2023-09-25T22:48:53,163 | ^~~ 2023-09-25T22:48:54,264 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack.constprop’: 2023-09-25T22:48:54,266 src/ViennaRNA/snoop.c:2771:3: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:48:54,267 2771 | free(struc_loop); 2023-09-25T22:48:54,267 | ^~~~~~~~~~~~~~~~ 2023-09-25T22:48:54,269 src/ViennaRNA/snoop.c:2524:12: note: ‘struc_loop’ was declared here 2023-09-25T22:48:54,269 2524 | char *struc_loop; 2023-09-25T22:48:54,270 | ^~~~~~~~~~ 2023-09-25T22:48:54,845 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack.constprop’: 2023-09-25T22:48:54,845 src/ViennaRNA/snoop.c:1074:3: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:48:54,846 1074 | free(struc_loop); 2023-09-25T22:48:54,846 | ^~~~~~~~~~~~~~~~ 2023-09-25T22:48:54,847 src/ViennaRNA/snoop.c:736:10: note: ‘struc_loop’ was declared here 2023-09-25T22:48:54,847 736 | char *struc_loop; 2023-09-25T22:48:54,848 | ^~~~~~~~~~ 2023-09-25T22:48:58,755 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS’: 2023-09-25T22:48:58,758 src/ViennaRNA/snoop.c:3374:12: warning: ‘u’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:48:58,758 3374 | return mfe; 2023-09-25T22:48:58,759 | ^~~ 2023-09-25T22:48:58,761 src/ViennaRNA/snoop.c:3232:13: note: ‘u’ was declared here 2023-09-25T22:48:58,761 3232 | int u; 2023-09-25T22:48:58,762 | ^ 2023-09-25T22:48:58,764 src/ViennaRNA/snoop.c:3448:12: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:48:58,765 3448 | char *struc_loop; 2023-09-25T22:48:58,765 | ^~~~~~~~~~ 2023-09-25T22:48:59,838 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2023-09-25T22:48:59,841 src/ViennaRNA/snoop.c:2992:19: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:48:59,841 2992 | position_j[i] = min_j_colonne; 2023-09-25T22:48:59,842 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T22:48:59,844 src/ViennaRNA/snoop.c:2820:7: note: ‘min_j_colonne’ was declared here 2023-09-25T22:48:59,844 2820 | int min_j_colonne; 2023-09-25T22:48:59,845 | ^~~~~~~~~~~~~ 2023-09-25T22:49:00,572 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/special_const.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/special_const.o -fopenmp 2023-09-25T22:49:00,665 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/stringdist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/stringdist.o -fopenmp 2023-09-25T22:49:01,641 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/subopt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/subopt.o -fopenmp 2023-09-25T22:49:01,960 In file included from src/ViennaRNA/subopt.c:38: 2023-09-25T22:49:01,961 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-09-25T22:49:01,962 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:01,962 865 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:49:01,963 | ^ 2023-09-25T22:49:01,963 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-09-25T22:49:01,964 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:01,964 898 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:49:01,965 | ^ 2023-09-25T22:49:01,966 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-09-25T22:49:01,966 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:01,967 969 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:01,967 | ^ 2023-09-25T22:49:01,968 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-09-25T22:49:01,968 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:01,969 993 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:01,969 | ^ 2023-09-25T22:49:01,970 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-09-25T22:49:01,971 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:01,971 1121 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:01,972 | ^ 2023-09-25T22:49:01,973 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-09-25T22:49:01,974 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:01,974 1145 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:01,975 | ^ 2023-09-25T22:49:01,975 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-09-25T22:49:01,976 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:01,977 1292 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:49:01,977 | ^ 2023-09-25T22:49:01,978 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-09-25T22:49:01,979 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:01,979 1320 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:49:01,980 | ^ 2023-09-25T22:49:01,980 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-09-25T22:49:01,981 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:01,982 1348 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:49:01,982 | ^ 2023-09-25T22:49:01,983 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-09-25T22:49:01,984 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:01,984 1404 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:01,985 | ^ 2023-09-25T22:49:01,986 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-09-25T22:49:01,986 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:01,987 1426 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:01,987 | ^ 2023-09-25T22:49:01,988 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-09-25T22:49:01,988 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:01,989 1450 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:01,989 | ^ 2023-09-25T22:49:01,990 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-09-25T22:49:01,990 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:01,991 1596 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:49:01,991 | ^ 2023-09-25T22:49:01,992 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-09-25T22:49:01,992 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:01,993 1628 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:49:01,994 | ^ 2023-09-25T22:49:01,995 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-09-25T22:49:01,995 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:01,996 1677 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:01,997 | ^ 2023-09-25T22:49:01,997 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-09-25T22:49:01,998 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:01,999 1698 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,000 | ^ 2023-09-25T22:49:02,000 In file included from src/ViennaRNA/subopt.c:40: 2023-09-25T22:49:02,001 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-09-25T22:49:02,001 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,002 71 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,003 | ^ 2023-09-25T22:49:02,003 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-09-25T22:49:02,004 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,005 110 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,005 | ^ 2023-09-25T22:49:02,006 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-09-25T22:49:02,007 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,008 141 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,009 | ^ 2023-09-25T22:49:02,009 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-09-25T22:49:02,009 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,010 183 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,010 | ^ 2023-09-25T22:49:02,011 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-09-25T22:49:02,011 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,012 222 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,012 | ^ 2023-09-25T22:49:02,013 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-09-25T22:49:02,013 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,014 726 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,014 | ^ 2023-09-25T22:49:02,015 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-09-25T22:49:02,015 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:02,016 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T22:49:02,016 | ^~ 2023-09-25T22:49:02,017 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-09-25T22:49:02,018 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,018 780 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,019 | ^ 2023-09-25T22:49:02,020 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-09-25T22:49:02,020 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,021 821 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,022 | ^ 2023-09-25T22:49:02,025 In file included from src/ViennaRNA/subopt.c:41: 2023-09-25T22:49:02,026 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-09-25T22:49:02,027 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,028 76 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,028 | ^ 2023-09-25T22:49:02,029 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-09-25T22:49:02,029 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,030 95 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,031 | ^ 2023-09-25T22:49:02,031 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-09-25T22:49:02,032 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,033 124 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,034 | ^ 2023-09-25T22:49:02,034 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-09-25T22:49:02,035 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,036 155 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,037 | ^ 2023-09-25T22:49:02,037 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-09-25T22:49:02,038 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,038 328 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,039 | ^ 2023-09-25T22:49:02,039 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-09-25T22:49:02,040 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,040 397 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,041 | ^ 2023-09-25T22:49:02,041 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-09-25T22:49:02,042 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,042 530 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,043 | ^ 2023-09-25T22:49:02,043 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-09-25T22:49:02,044 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,044 663 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,045 | ^ 2023-09-25T22:49:02,046 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-09-25T22:49:02,046 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,047 802 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,048 | ^ 2023-09-25T22:49:02,048 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-09-25T22:49:02,049 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,050 849 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T22:49:02,050 | ^ 2023-09-25T22:49:02,051 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-09-25T22:49:02,052 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,052 888 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,053 | ^ 2023-09-25T22:49:02,053 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-09-25T22:49:02,054 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,055 947 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,055 | ^ 2023-09-25T22:49:02,056 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-09-25T22:49:02,056 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,057 983 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,058 | ^ 2023-09-25T22:49:02,058 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-09-25T22:49:02,059 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,059 1020 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,060 | ^ 2023-09-25T22:49:02,060 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-09-25T22:49:02,061 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,062 1079 | for (s = 0; s < data->n_seq; s++) 2023-09-25T22:49:02,062 | ^ 2023-09-25T22:49:02,076 src/ViennaRNA/subopt.c: In function ‘vrna_subopt_cb’: 2023-09-25T22:49:02,076 src/ViennaRNA/subopt.c:510:29: warning: variable ‘ss’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:49:02,077 510 | unsigned int *so, *ss; 2023-09-25T22:49:02,077 | ^~ 2023-09-25T22:49:02,078 src/ViennaRNA/subopt.c:510:24: warning: variable ‘so’ set but not used [-Wunused-but-set-variable] 2023-09-25T22:49:02,078 510 | unsigned int *so, *ss; 2023-09-25T22:49:02,079 | ^~ 2023-09-25T22:49:02,112 src/ViennaRNA/subopt.c: In function ‘scan_fms3’: 2023-09-25T22:49:02,114 src/ViennaRNA/subopt.c:2463:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,115 2463 | s3 = ((i < length) && (sn[i] == sn[i + 1])) ? S1[i + 1] : -1; 2023-09-25T22:49:02,115 | ^ 2023-09-25T22:49:02,119 src/ViennaRNA/subopt.c:2545:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,120 2545 | s3 = ((i < length) && (sn[i] == sn[i + 1])) ? S1[i + 1] : -1; 2023-09-25T22:49:02,120 | ^ 2023-09-25T22:49:02,130 src/ViennaRNA/subopt.c: In function ‘repeat’: 2023-09-25T22:49:02,132 src/ViennaRNA/subopt.c:2907:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,133 2907 | if (se[sn[i]] > i) 2023-09-25T22:49:02,134 | ^ 2023-09-25T22:49:02,135 src/ViennaRNA/subopt.c:2910:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:02,136 2910 | if (j - 1 > se[sn[i]]) 2023-09-25T22:49:02,137 | ^ 2023-09-25T22:49:02,138 src/ViennaRNA/subopt.c:2927:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:02,139 2927 | if (i + 1 <= se[sn[nick]]) 2023-09-25T22:49:02,139 | ^~ 2023-09-25T22:49:02,141 src/ViennaRNA/subopt.c:2930:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:02,142 2930 | if (se[sn[nick]] + 1 <= j - 1) 2023-09-25T22:49:02,142 | ^~ 2023-09-25T22:49:11,993 In file included from src/ViennaRNA/subopt.c:44: 2023-09-25T22:49:11,994 In function ‘print_structure’, 2023-09-25T22:49:11,995 inlined from ‘vrna_subopt’ at src/ViennaRNA/subopt.c:441:7: 2023-09-25T22:49:11,995 src/ViennaRNA/color_output.inc:61:7: warning: ‘SeQ’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T22:49:11,996 61 | fprintf(fp, "%s\n", structure); 2023-09-25T22:49:11,997 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T22:49:11,998 src/ViennaRNA/subopt.c: In function ‘vrna_subopt’: 2023-09-25T22:49:11,999 src/ViennaRNA/subopt.c:426:14: note: ‘SeQ’ was declared here 2023-09-25T22:49:11,999 426 | char *SeQ, *energies = NULL; 2023-09-25T22:49:12,000 | ^~~ 2023-09-25T22:49:12,777 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/subopt_zuker.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/subopt_zuker.o -fopenmp 2023-09-25T22:49:12,950 src/ViennaRNA/subopt_zuker.c: In function ‘vrna_subopt_zuker’: 2023-09-25T22:49:12,950 src/ViennaRNA/subopt_zuker.c:256:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:12,951 256 | if (hc->up_int[l + 1] < u2) 2023-09-25T22:49:12,951 | ^ 2023-09-25T22:49:12,952 src/ViennaRNA/subopt_zuker.c:268:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:12,953 268 | if (hc->up_int[i + 1] < u1) 2023-09-25T22:49:12,953 | ^ 2023-09-25T22:49:12,954 src/ViennaRNA/subopt_zuker.c:302:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:12,955 302 | if ((hc->up_ml[i + 1] >= u) && 2023-09-25T22:49:12,956 | ^~ 2023-09-25T22:49:12,969 src/ViennaRNA/subopt_zuker.c: In function ‘backtrack’: 2023-09-25T22:49:12,970 src/ViennaRNA/subopt_zuker.c:788:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:12,971 788 | if (hc->up_int[i + 1] < u1) 2023-09-25T22:49:12,971 | ^ 2023-09-25T22:49:12,972 src/ViennaRNA/subopt_zuker.c:800:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:12,973 800 | if (hc->up_int[l + 1] < u2) 2023-09-25T22:49:12,974 | ^ 2023-09-25T22:49:12,976 src/ViennaRNA/subopt_zuker.c:857:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:12,977 857 | if (hc->up_ml[i + 1] < u1) 2023-09-25T22:49:12,977 | ^ 2023-09-25T22:49:12,979 src/ViennaRNA/subopt_zuker.c:898:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:12,980 898 | if ((hc->up_ml[i + 1] >= u1) && 2023-09-25T22:49:12,981 | ^~ 2023-09-25T22:49:15,300 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/treedist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/treedist.o -fopenmp 2023-09-25T22:49:15,453 src/ViennaRNA/treedist.c: In function ‘sprint_aligned_trees’: 2023-09-25T22:49:15,454 src/ViennaRNA/treedist.c:724:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:49:15,454 724 | for (k = 0; k < strlen(ll); k++) { 2023-09-25T22:49:15,455 | ^ 2023-09-25T22:49:15,456 src/ViennaRNA/treedist.c:745:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:49:15,456 745 | for (k = 0; k < strlen(ll); k++) { 2023-09-25T22:49:15,457 | ^ 2023-09-25T22:49:15,457 src/ViennaRNA/treedist.c:771:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:49:15,458 771 | for (k = 0; k < strlen(ll) - strlen(ll1); k++) 2023-09-25T22:49:15,458 | ^ 2023-09-25T22:49:15,459 src/ViennaRNA/treedist.c:775:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:49:15,459 775 | for (k = 0; k < strlen(ll1) - strlen(ll); k++) 2023-09-25T22:49:15,460 | ^ 2023-09-25T22:49:15,460 src/ViennaRNA/treedist.c:778:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:49:15,461 778 | for (k = 0; k < strlen(ll); k++) 2023-09-25T22:49:15,461 | ^ 2023-09-25T22:49:15,462 src/ViennaRNA/treedist.c:780:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T22:49:15,463 780 | for (k = 0; k < strlen(ll); k++) 2023-09-25T22:49:15,464 | ^ 2023-09-25T22:49:16,477 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/unstructured_domains.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/unstructured_domains.o -fopenmp 2023-09-25T22:49:16,691 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_motifs_centroid’: 2023-09-25T22:49:16,692 src/ViennaRNA/unstructured_domains.c:366:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:16,692 366 | for (m = 0; m < domains_up->motif_count; m++) { 2023-09-25T22:49:16,693 | ^ 2023-09-25T22:49:16,694 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_motifs_MEA’: 2023-09-25T22:49:16,695 src/ViennaRNA/unstructured_domains.c:435:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:16,696 435 | for (i = ptr->i; i <= ptr->j; i++) 2023-09-25T22:49:16,696 | ^~ 2023-09-25T22:49:16,699 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_get_motif_size_at’: 2023-09-25T22:49:16,700 src/ViennaRNA/unstructured_domains.c:679:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:16,700 679 | if ((i > 0) && (i <= vc->length)) { 2023-09-25T22:49:16,701 | ^~ 2023-09-25T22:49:16,702 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_get_motifs_at’: 2023-09-25T22:49:16,702 src/ViennaRNA/unstructured_domains.c:722:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:16,703 722 | if ((i > 0) && (i <= vc->length)) 2023-09-25T22:49:16,703 | ^~ 2023-09-25T22:49:16,704 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_detect_motifs’: 2023-09-25T22:49:16,704 src/ViennaRNA/unstructured_domains.c:748:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:16,705 748 | while (l < vc->length) { 2023-09-25T22:49:16,706 | ^ 2023-09-25T22:49:16,707 src/ViennaRNA/unstructured_domains.c:750:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:16,707 750 | while (l < vc->length) { 2023-09-25T22:49:16,707 | ^ 2023-09-25T22:49:16,708 src/ViennaRNA/unstructured_domains.c:757:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:16,708 757 | if (l < vc->length) { 2023-09-25T22:49:16,709 | ^ 2023-09-25T22:49:16,709 src/ViennaRNA/unstructured_domains.c:761:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:16,710 761 | if (l == vc->length) 2023-09-25T22:49:16,710 | ^~ 2023-09-25T22:49:16,714 src/ViennaRNA/unstructured_domains.c: In function ‘fill_MFE_matrix’: 2023-09-25T22:49:16,715 src/ViennaRNA/unstructured_domains.c:1122:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:16,715 1122 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-09-25T22:49:16,716 | ^ 2023-09-25T22:49:16,716 src/ViennaRNA/unstructured_domains.c:1138:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:16,717 1138 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-09-25T22:49:16,717 | ^ 2023-09-25T22:49:16,718 src/ViennaRNA/unstructured_domains.c:1140:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:16,718 1140 | if (u <= d) { 2023-09-25T22:49:16,719 | ^~ 2023-09-25T22:49:16,719 src/ViennaRNA/unstructured_domains.c:1147:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T22:49:16,720 1147 | if (u < d) 2023-09-25T22:49:16,720 | ^ 2023-09-25T22:49:16,721 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MFE_matrix’: 2023-09-25T22:49:16,721 src/ViennaRNA/unstructured_domains.c:1185:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:16,722 1185 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-09-25T22:49:16,722 | ^ 2023-09-25T22:49:16,723 src/ViennaRNA/unstructured_domains.c:1201:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:16,723 1201 | for (k = 0; k < domains_up->motif_count; k++) 2023-09-25T22:49:16,724 | ^ 2023-09-25T22:49:16,724 src/ViennaRNA/unstructured_domains.c:1230:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:16,725 1230 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-09-25T22:49:16,725 | ^ 2023-09-25T22:49:16,726 src/ViennaRNA/unstructured_domains.c:1240:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:16,727 1240 | for (k = 0; k < domains_up->motif_count; k++) 2023-09-25T22:49:16,727 | ^ 2023-09-25T22:49:16,728 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MFE_matrix_exhaustive’: 2023-09-25T22:49:16,728 src/ViennaRNA/unstructured_domains.c:1352:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:16,729 1352 | for (k = 0; k < domains_up->uniq_motif_count; k++) { 2023-09-25T22:49:16,729 | ^ 2023-09-25T22:49:16,730 src/ViennaRNA/unstructured_domains.c:1367:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:16,730 1367 | for (m = 0; m < domains_up->uniq_motif_count; m++) 2023-09-25T22:49:16,731 | ^ 2023-09-25T22:49:16,731 src/ViennaRNA/unstructured_domains.c:1394:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:16,732 1394 | for (m = 0; m < domains_up->uniq_motif_count; m++) 2023-09-25T22:49:16,732 | ^ 2023-09-25T22:49:16,733 src/ViennaRNA/unstructured_domains.c: In function ‘fill_MEA_matrix’: 2023-09-25T22:49:16,733 src/ViennaRNA/unstructured_domains.c:1451:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:16,733 1451 | for (m = 0; m < domains_up->motif_count; m++) { 2023-09-25T22:49:16,734 | ^ 2023-09-25T22:49:16,734 src/ViennaRNA/unstructured_domains.c:1466:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:16,735 1466 | for (m = 0; m < domains_up->motif_count; m++) { 2023-09-25T22:49:16,735 | ^ 2023-09-25T22:49:16,736 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MEA_matrix’: 2023-09-25T22:49:16,737 src/ViennaRNA/unstructured_domains.c:1522:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:16,738 1522 | for (m = 0; m < domains_up->motif_count; m++) { 2023-09-25T22:49:16,738 | ^ 2023-09-25T22:49:16,739 src/ViennaRNA/unstructured_domains.c: In function ‘add_ligand_motif’: 2023-09-25T22:49:16,740 src/ViennaRNA/unstructured_domains.c:1600:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T22:49:16,741 1600 | for (same_size = i = 0; i < ud->uniq_motif_count; i++) { 2023-09-25T22:49:16,741 | ^ 2023-09-25T22:49:19,449 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/utils/cpu.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/cpu.o -fopenmp 2023-09-25T22:49:19,615 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/utils/higher_order_functions.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/higher_order_functions.o -fopenmp 2023-09-25T22:49:19,884 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/utils/higher_order_functions_avx512.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/higher_order_functions_avx512.o -fopenmp -mavx512f 2023-09-25T22:49:19,901 arm-linux-gnueabihf-gcc: error: unrecognized command-line option ‘-mavx512f’ 2023-09-25T22:49:19,904 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-25T22:49:20,023 ERROR: [present-rich] Building wheel for viennarna (pyproject.toml) exited with 1 2023-09-25T22:49:20,037 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmp28dyuqh3[/] 2023-09-25T22:49:20,037 [bold magenta]cwd[/]: /tmp/pip-wheel-vzhg8rp_/viennarna_65a2628575be4107bf7acf10e0a92536 2023-09-25T22:49:20,038 Building wheel for viennarna (pyproject.toml): finished with status 'error' 2023-09-25T22:49:20,040 ERROR: Failed building wheel for viennarna 2023-09-25T22:49:20,042 Failed to build viennarna 2023-09-25T22:49:20,043 ERROR: Failed to build one or more wheels 2023-09-25T22:49:20,045 Exception information: 2023-09-25T22:49:20,045 Traceback (most recent call last): 2023-09-25T22:49:20,045 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-25T22:49:20,045 status = run_func(*args) 2023-09-25T22:49:20,045 ^^^^^^^^^^^^^^^ 2023-09-25T22:49:20,045 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-25T22:49:20,045 return func(self, options, args) 2023-09-25T22:49:20,045 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-25T22:49:20,045 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-25T22:49:20,045 raise CommandError("Failed to build one or more wheels") 2023-09-25T22:49:20,045 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-25T22:49:20,049 Removed build tracker: '/tmp/pip-build-tracker-n51c07mr'