2023-09-26T03:33:31,328 Created temporary directory: /tmp/pip-build-tracker-q16u9kix 2023-09-26T03:33:31,329 Initialized build tracking at /tmp/pip-build-tracker-q16u9kix 2023-09-26T03:33:31,330 Created build tracker: /tmp/pip-build-tracker-q16u9kix 2023-09-26T03:33:31,330 Entered build tracker: /tmp/pip-build-tracker-q16u9kix 2023-09-26T03:33:31,331 Created temporary directory: /tmp/pip-wheel-q6vko1bv 2023-09-26T03:33:31,334 Created temporary directory: /tmp/pip-ephem-wheel-cache-rtxnj427 2023-09-26T03:33:31,356 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-26T03:33:31,360 2 location(s) to search for versions of splam: 2023-09-26T03:33:31,360 * https://pypi.org/simple/splam/ 2023-09-26T03:33:31,360 * https://www.piwheels.org/simple/splam/ 2023-09-26T03:33:31,361 Fetching project page and analyzing links: https://pypi.org/simple/splam/ 2023-09-26T03:33:31,361 Getting page https://pypi.org/simple/splam/ 2023-09-26T03:33:31,363 Found index url https://pypi.org/simple/ 2023-09-26T03:33:31,622 Fetched page https://pypi.org/simple/splam/ as application/vnd.pypi.simple.v1+json 2023-09-26T03:33:31,631 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/57/2a/d68f86c46b3152c9072975cb1c8b3f2345e0f71cea763c0635ca8c5e0261/splam-0.2.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,633 Found link https://files.pythonhosted.org/packages/ba/e8/4cf0f802bf26fd6587829e3688109caef6d26e13d19ce003ac876212da15/splam-0.2.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.9 2023-09-26T03:33:31,633 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f0/97/c31f00ac8a786213c4a50dd993cd04e61af08766e9559f244fb9c3929178/splam-0.2.10-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,634 Found link https://files.pythonhosted.org/packages/72/d1/671663c98d0cfca3218b880633390493fcebf9972175a7c4d2752259f2ea/splam-0.2.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.10 2023-09-26T03:33:31,635 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/ad/36/84239a43f206dfbfe07c6e6f76ef8c54235439210640aeacc8cb20e24c2e/splam-0.2.11-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,636 Found link https://files.pythonhosted.org/packages/c7/b3/96a175c203358d735694d7d5fd9261ef8683af968e14e473e823d159cee1/splam-0.2.11.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.11 2023-09-26T03:33:31,637 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/a5/f5/e15307ccb65ec9c225b7f1af65ee2c8880ba8eb049d386f4c9da459b2e1e/splam-0.2.12-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,638 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ba/88/6cac004352d4aa92aabdfd31f9b96919f8044db486185d3fd3c924583bc8/splam-0.2.12-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,639 Found link https://files.pythonhosted.org/packages/32/fa/a9795e9df88e8ea6c6788ae171702d5f9d8ce2c3472408ab0784f08a7b91/splam-0.2.12.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.12 2023-09-26T03:33:31,639 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/59/88/fefee12f8e44d6879a0970d37b42fc4dc54010f78b1ee91f6db366c1f125/splam-0.2.13-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,640 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/64/13/d601e5e99b31891d95bc0a6201367dab38f12faaadcb6aedbee7725dca71/splam-0.2.13-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,641 Found link https://files.pythonhosted.org/packages/cf/fb/2e5425fcdb2e5fd7ff963b174b1582816154fd0373bbc96edf4e851d272d/splam-0.2.13.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.13 2023-09-26T03:33:31,642 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/da/65/a129eabb1d673da72f1d7dfd3495c01c89da78569b7f2dba2c746a0c0f29/splam-0.2.14-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,642 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/79/2fdaa68664126c8c71bac526b41e1e35e4195879170c8129a8d482f3ae7b/splam-0.2.14-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,643 Found link https://files.pythonhosted.org/packages/9b/3f/d7dd2411528494ed5062665c3b5d5d7d8422fd11fa181d5fc01ea67d7dbf/splam-0.2.14.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.14 2023-09-26T03:33:31,644 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f4/9a/e7d1f5f16d77888ac5d0935e180fa2210e875ff487909519d6871e1301da/splam-0.2.15-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,644 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/40/b6/eda61824794c736e52c09353dfbbd70eea4d0f0ab31896f3688d269ab64b/splam-0.2.15-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,645 Found link https://files.pythonhosted.org/packages/29/d0/5e9ef93e49636308cb56b70a06c8932321cb60a4aae678d8bb1d213b52b5/splam-0.2.15.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.15 2023-09-26T03:33:31,645 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e5/17/caa4b05a6370f2d197ec174fe1968f63acc357db5923efca0860b3a5e141/splam-0.2.16-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,646 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fe/a5/d90a02293e34acf5515a8f435ae90afeb823336d6232a7bedf01436a00f9/splam-0.2.17-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,647 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ef/af/7db5183d8c36a250bb4547c58610624b4d1067ea0eb119addc8986ce6ec1/splam-0.2.17-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,648 Found link https://files.pythonhosted.org/packages/26/3a/0e89dd56f9617853061d7c4ed6a220a414a01bba9f0005e54da52a1ad22e/splam-0.2.17.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.17 2023-09-26T03:33:31,649 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/bd/50/ae02dcd9e7c53df59acc9ad83ac389a886e55254cd6953614d43f0eaac60/splam-0.3.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,649 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/78/0b/8b0b45b16922007f88c9b81357cde8b84f9ea45327104b00724024e722ec/splam-0.3.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,650 Found link https://files.pythonhosted.org/packages/e5/c7/4bf13e849aefc7cfdd94f142e6267e4937c61d7fb9fbfe1119953f6a5e72/splam-0.3.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.3.0 2023-09-26T03:33:31,651 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/55/d8079e937d1f568ac9358237871b9d4d6d28abf1e8e8ec2b8073db7b166a/splam-0.3.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,651 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6d/9f/5e7c396bd04da9866f89f51574bd3fec1e691b279116e4d4de92b75b6538/splam-1.0.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,652 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/56/ae/c9e443ec09db88b2b2aaa18ebc6b12751b321d731ce21964ee188067bb0f/splam-1.0.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,653 Found link https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.0 2023-09-26T03:33:31,654 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/43/45/27c64605655d3127bf6155bc060f98fb565e631553e4f0e0a53d3922ebf3/splam-1.0.1-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,654 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/4d/0b5427df4d5d74ba5a98e28805b45fee4b15d2cad1e9aa91069306c29da7/splam-1.0.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,655 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/da/e1/11ee65eb50a2f628f92249d84cd72eddbc1386afbc82c7410fceb627d995/splam-1.0.1-py3.9-linux-x86_64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,656 Found link https://files.pythonhosted.org/packages/ad/3c/5a2fcc44ca9afa6bc1cb4fe6a30ba6495f9c1359c6b610536cb6c7998ca1/splam-1.0.1.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.1 2023-09-26T03:33:31,656 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6a/e7/e7827b0d637f018ef8d18ea969985ce37ffa520fd1bf6d0e8d43d72b749e/splam-1.0.2-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,657 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f2/ba/94da0985b6db88ba663b4e56a395d74d04283a79d0fdf476763251f5679f/splam-1.0.2-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,658 Found link https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.2 2023-09-26T03:33:31,658 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/30/c9/23c10c8ee217996cc58e6f16ffc732657d1cb3011f7cbc41ebb51927bbbb/splam-1.0.3-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,659 Found link https://files.pythonhosted.org/packages/b3/80/1ff08f5e516c2ce233a75e61e8ce3dacc34b00bd2cae4fae0d01b0d758e9/splam-1.0.3.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.3 2023-09-26T03:33:31,660 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/70/bd/3aacba5a589a5a8d4688781f1376a822b1df05526355738a85f10a6f0c86/splam-1.0.4-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,661 Found link https://files.pythonhosted.org/packages/b3/ef/1c49f24a396880a7ac6773041c067d1418ca533df5018de37f1fb49f512a/splam-1.0.4.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.4 2023-09-26T03:33:31,662 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/54/7e/ce14252ed5cbc26ad69ffe8ec6909d91f2bed9f97749fb5ba0f43a935479/splam-1.0.5-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,663 Found link https://files.pythonhosted.org/packages/5f/dd/ac054961585d4e5d71c889e8840dc096a847ac38b04295f38dbe524718e5/splam-1.0.5.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.5 2023-09-26T03:33:31,663 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f7/1e/02d35d67ba3f32f629f40824705e8ef82b6a80914fef3ffa59bcea67c965/splam-1.0.6-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,664 Found link https://files.pythonhosted.org/packages/b2/7d/e8f8b51f071b0bc4e2a1a0cc31db50c9acecb68271cd5bd5e113c7442fed/splam-1.0.6.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.6 2023-09-26T03:33:31,665 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/1d/57/3fbf056633d3332ab938f761553161346599e27c5f5c66f605c08b4fb2b3/splam-1.0.7-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,666 Found link https://files.pythonhosted.org/packages/a5/b6/ffa6c7c753ce7d9989d0e3adcb5310ecf29429dce73ffe51f2b63434c9fc/splam-1.0.7.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.7 2023-09-26T03:33:31,666 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/35/fa/76bf21536e4f60a1caae0132889ab74457d9c75a9476c3d0ec7b578870af/splam-1.0.8-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,667 Found link https://files.pythonhosted.org/packages/a5/ad/6d3495d79895726b6df06f3cd667006e5316fa3235e6919b841057f6e666/splam-1.0.8.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.8 2023-09-26T03:33:31,668 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fc/24/c13538db2c354993494537d33e4138e39d65e83f947f55d6f9d599e12a63/splam-1.0.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,668 Found link https://files.pythonhosted.org/packages/4d/2c/303bafdffb18df8357ea5c7f2bc00f9e4afd9667b9f10b411091c3adc293/splam-1.0.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.9 2023-09-26T03:33:31,669 Fetching project page and analyzing links: https://www.piwheels.org/simple/splam/ 2023-09-26T03:33:31,671 Getting page https://www.piwheels.org/simple/splam/ 2023-09-26T03:33:31,672 Found index url https://www.piwheels.org/simple/ 2023-09-26T03:33:31,830 Fetched page https://www.piwheels.org/simple/splam/ as text/html 2023-09-26T03:33:31,842 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=7453657a38dcf0d7c2daaf93faf6a2938e28d036a3910105918ccff02dc54ca0 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,843 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=7453657a38dcf0d7c2daaf93faf6a2938e28d036a3910105918ccff02dc54ca0 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,843 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=c708c1c8ebbbb979a2a34a938458ac9a9555c23555f3385e0dd5b014a62f7c27 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,844 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=c708c1c8ebbbb979a2a34a938458ac9a9555c23555f3385e0dd5b014a62f7c27 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,845 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=dfd90ff647e7d082d2fc0c7fb31267ff57904b1f695afa56a45f1edfbe66dd36 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,845 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=dfd90ff647e7d082d2fc0c7fb31267ff57904b1f695afa56a45f1edfbe66dd36 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,846 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.2-cp37-cp37m-linux_armv7l.whl#sha256=0da1ce51d76a21042b3077b98b6ada39416083c473650dd277efe9003015c43f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,846 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.2-cp37-cp37m-linux_armv6l.whl#sha256=0da1ce51d76a21042b3077b98b6ada39416083c473650dd277efe9003015c43f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,847 Skipping link: No binaries permitted for splam: 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https://www.piwheels.org/simple/splam/splam-0.3.0-cp39-cp39-linux_armv6l.whl#sha256=c3a1b0ed2154e6f57b99c5dc2f09741faf5870038b8f86b488481cbc1cea6038 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,852 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp37-cp37m-linux_armv7l.whl#sha256=e995d4cf8f5f1d21c7acb05a431d0a13318d1dfb4fff327949db624e7b3d4406 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,853 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp37-cp37m-linux_armv6l.whl#sha256=e995d4cf8f5f1d21c7acb05a431d0a13318d1dfb4fff327949db624e7b3d4406 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,854 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp39-cp39-linux_armv7l.whl#sha256=61b2ad768b658cf35de2ec1cadc48174bba190e551c2f6e110cef152a0538d0f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,854 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp39-cp39-linux_armv6l.whl#sha256=61b2ad768b658cf35de2ec1cadc48174bba190e551c2f6e110cef152a0538d0f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,855 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp37-cp37m-linux_armv7l.whl#sha256=0a4fa9a067616033f881d9c22e1276e29cc4428f1241db0d262c13609379e2cf (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,855 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp37-cp37m-linux_armv6l.whl#sha256=0a4fa9a067616033f881d9c22e1276e29cc4428f1241db0d262c13609379e2cf (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,855 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv7l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,856 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv6l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,856 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp37-cp37m-linux_armv7l.whl#sha256=198f24795b97dfeeb87bfd8760ef5894be763c7c872f489ea0c4292c781067b6 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,857 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp37-cp37m-linux_armv6l.whl#sha256=198f24795b97dfeeb87bfd8760ef5894be763c7c872f489ea0c4292c781067b6 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,858 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp311-cp311-linux_armv7l.whl#sha256=3358137f046748462107e305dd9d042c880d1ac8e4b165f0ba3872db24bc2175 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,858 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp311-cp311-linux_armv6l.whl#sha256=3358137f046748462107e305dd9d042c880d1ac8e4b165f0ba3872db24bc2175 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,859 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv7l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,859 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv6l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,860 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv7l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,861 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv6l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,861 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv7l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,862 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv6l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,862 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv7l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,863 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv6l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,863 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv7l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,863 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv6l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,864 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv7l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,865 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv6l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T03:33:31,865 Skipping link: not a file: https://www.piwheels.org/simple/splam/ 2023-09-26T03:33:31,866 Skipping link: not a file: https://pypi.org/simple/splam/ 2023-09-26T03:33:31,886 Given no hashes to check 1 links for project 'splam': discarding no candidates 2023-09-26T03:33:31,904 Collecting splam==1.0.0 2023-09-26T03:33:31,907 Created temporary directory: /tmp/pip-unpack-l3v9opjh 2023-09-26T03:33:34,133 Downloading splam-1.0.0.tar.gz (40.6 MB) 2023-09-26T03:33:48,908 Added splam==1.0.0 from https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-q16u9kix' 2023-09-26T03:33:48,910 Running setup.py (path:/tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/setup.py) egg_info for package splam 2023-09-26T03:33:48,911 Created temporary directory: /tmp/pip-pip-egg-info-8u5gszbu 2023-09-26T03:33:48,912 Preparing metadata (setup.py): started 2023-09-26T03:33:48,913 Running command python setup.py egg_info 2023-09-26T03:33:50,437 running egg_info 2023-09-26T03:33:50,438 creating /tmp/pip-pip-egg-info-8u5gszbu/splam.egg-info 2023-09-26T03:33:50,462 writing /tmp/pip-pip-egg-info-8u5gszbu/splam.egg-info/PKG-INFO 2023-09-26T03:33:50,465 writing dependency_links to /tmp/pip-pip-egg-info-8u5gszbu/splam.egg-info/dependency_links.txt 2023-09-26T03:33:50,467 writing entry points to /tmp/pip-pip-egg-info-8u5gszbu/splam.egg-info/entry_points.txt 2023-09-26T03:33:50,468 writing requirements to /tmp/pip-pip-egg-info-8u5gszbu/splam.egg-info/requires.txt 2023-09-26T03:33:50,469 writing top-level names to /tmp/pip-pip-egg-info-8u5gszbu/splam.egg-info/top_level.txt 2023-09-26T03:33:50,470 writing manifest file '/tmp/pip-pip-egg-info-8u5gszbu/splam.egg-info/SOURCES.txt' 2023-09-26T03:33:50,547 reading manifest file '/tmp/pip-pip-egg-info-8u5gszbu/splam.egg-info/SOURCES.txt' 2023-09-26T03:33:50,549 reading manifest template 'MANIFEST.in' 2023-09-26T03:33:50,746 adding license file 'LICENSE' 2023-09-26T03:33:50,780 writing manifest file '/tmp/pip-pip-egg-info-8u5gszbu/splam.egg-info/SOURCES.txt' 2023-09-26T03:33:50,888 Preparing metadata (setup.py): finished with status 'done' 2023-09-26T03:33:50,891 Source in /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb has version 1.0.0, which satisfies requirement splam==1.0.0 from https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz 2023-09-26T03:33:50,892 Removed splam==1.0.0 from https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-q16u9kix' 2023-09-26T03:33:50,897 Created temporary directory: /tmp/pip-unpack-z_rruc5q 2023-09-26T03:33:50,898 Created temporary directory: /tmp/pip-unpack-wj6gvyxr 2023-09-26T03:33:50,907 Building wheels for collected packages: splam 2023-09-26T03:33:50,911 Created temporary directory: /tmp/pip-wheel-_e1a714t 2023-09-26T03:33:50,912 Building wheel for splam (setup.py): started 2023-09-26T03:33:50,913 Destination directory: /tmp/pip-wheel-_e1a714t 2023-09-26T03:33:50,914 Running command python setup.py bdist_wheel 2023-09-26T03:33:51,897 running bdist_wheel 2023-09-26T03:33:51,968 running build 2023-09-26T03:33:51,969 running build_py 2023-09-26T03:33:51,998 creating build 2023-09-26T03:33:51,998 creating build/lib.linux-armv7l-cpython-311 2023-09-26T03:33:51,999 creating build/lib.linux-armv7l-cpython-311/splam 2023-09-26T03:33:52,000 copying splam/__init__.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T03:33:52,002 copying splam/extract_gff.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T03:33:52,004 copying splam/header.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T03:33:52,005 copying splam/SPLAM.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T03:33:52,007 copying splam/parse.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T03:33:52,009 copying splam/chr_size.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T03:33:52,012 copying splam/clean_gff.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T03:33:52,014 copying splam/config.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T03:33:52,015 copying splam/helper.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T03:33:52,017 copying splam/main.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T03:33:52,019 copying splam/prediction.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T03:33:52,022 running build_ext 2023-09-26T03:33:52,340 -- The C compiler identification is GNU 12.2.0 2023-09-26T03:33:52,695 -- The CXX compiler identification is GNU 12.2.0 2023-09-26T03:33:52,747 -- Detecting C compiler ABI info 2023-09-26T03:33:53,115 -- Detecting C compiler ABI info - done 2023-09-26T03:33:53,161 -- Check for working C compiler: /usr/bin/cc - skipped 2023-09-26T03:33:53,162 -- Detecting C compile features 2023-09-26T03:33:53,165 -- Detecting C compile features - done 2023-09-26T03:33:53,186 -- Detecting CXX compiler ABI info 2023-09-26T03:33:53,636 -- Detecting CXX compiler ABI info - done 2023-09-26T03:33:53,685 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-09-26T03:33:53,687 -- Detecting CXX compile features 2023-09-26T03:33:53,690 -- Detecting CXX compile features - done 2023-09-26T03:33:53,717 -- pybind11 v2.11.0 dev1 2023-09-26T03:33:53,794 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.6") 2023-09-26T03:33:53,875 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.11.so 2023-09-26T03:33:53,884 -- Performing Test HAS_FLTO 2023-09-26T03:33:54,514 -- Performing Test HAS_FLTO - Success 2023-09-26T03:33:54,573 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 2023-09-26T03:33:54,574 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/htslib 2023-09-26T03:33:54,574 LIBRARY_OUTPUT_DIRECTORY: 2023-09-26T03:33:54,657 EXAMPLE_VERSION_INFO: 1.0.0 2023-09-26T03:33:54,658 -- Configuring done 2023-09-26T03:33:54,743 -- Generating done 2023-09-26T03:33:54,755 -- Build files have been written to: /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/build/temp.linux-armv7l-cpython-311/splam_extract 2023-09-26T03:33:55,029 [ 2%] Creating directories for 'htslib' 2023-09-26T03:33:55,146 [ 5%] No download step for 'htslib' 2023-09-26T03:33:55,260 [ 8%] No update step for 'htslib' 2023-09-26T03:33:55,375 [ 11%] No patch step for 'htslib' 2023-09-26T03:33:55,490 [ 14%] Performing configure step for 'htslib' 2023-09-26T03:34:01,588 checking for gcc... gcc 2023-09-26T03:34:01,857 checking whether the C compiler works... yes 2023-09-26T03:34:01,857 checking for C compiler default output file name... a.out 2023-09-26T03:34:02,018 checking for suffix of executables... 2023-09-26T03:34:02,203 checking whether we are cross compiling... no 2023-09-26T03:34:02,299 checking for suffix of object files... o 2023-09-26T03:34:02,405 checking whether the compiler supports GNU C... yes 2023-09-26T03:34:02,507 checking whether gcc accepts -g... yes 2023-09-26T03:34:02,727 checking for gcc option to enable C11 features... none needed 2023-09-26T03:34:02,731 checking for ranlib... ranlib 2023-09-26T03:34:02,740 checking for grep that handles long lines and -e... /usr/bin/grep 2023-09-26T03:34:03,536 checking for C compiler warning flags... -Wall 2023-09-26T03:34:03,771 checking for gcc options needed to detect all undeclared functions... none needed 2023-09-26T03:34:03,861 checking for stdio.h... yes 2023-09-26T03:34:03,975 checking for stdlib.h... yes 2023-09-26T03:34:04,095 checking for string.h... yes 2023-09-26T03:34:04,219 checking for inttypes.h... yes 2023-09-26T03:34:04,342 checking for stdint.h... yes 2023-09-26T03:34:04,493 checking for strings.h... yes 2023-09-26T03:34:04,616 checking for sys/stat.h... yes 2023-09-26T03:34:04,738 checking for sys/types.h... yes 2023-09-26T03:34:04,870 checking for unistd.h... yes 2023-09-26T03:34:05,027 checking for sys/param.h... yes 2023-09-26T03:34:05,210 checking whether _XOPEN_SOURCE is declared... no 2023-09-26T03:34:05,408 checking C compiler flags needed for ssse3... none 2023-09-26T03:34:05,600 checking C compiler flags needed for popcnt... none 2023-09-26T03:34:05,778 checking C compiler flags needed for sse4.1... none 2023-09-26T03:34:05,953 checking C compiler flags needed for avx2... none 2023-09-26T03:34:06,189 checking C compiler flags needed for avx512f... none 2023-09-26T03:34:06,193 checking for pkg-config... /usr/bin/pkg-config 2023-09-26T03:34:06,200 checking pkg-config is at least version 0.9.0... yes 2023-09-26T03:34:06,202 checking for special C compiler options needed for large files... no 2023-09-26T03:34:06,379 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-09-26T03:34:06,391 checking shared library type for unknown-Linux... plain .so 2023-09-26T03:34:06,564 checking whether the linker supports versioned symbols... yes 2023-09-26T03:34:06,735 checking whether the compiler accepts -fvisibility=hidden... yes 2023-09-26T03:34:06,965 checking build system type... armv7l-unknown-linux-gnueabihf 2023-09-26T03:34:06,966 checking host system type... armv7l-unknown-linux-gnueabihf 2023-09-26T03:34:07,150 checking for getpagesize... yes 2023-09-26T03:34:07,491 checking for working mmap... yes 2023-09-26T03:34:07,697 checking for gmtime_r... yes 2023-09-26T03:34:07,886 checking for fsync... yes 2023-09-26T03:34:08,068 checking for drand48... yes 2023-09-26T03:34:08,269 checking for srand48_deterministic... no 2023-09-26T03:34:08,431 checking whether fdatasync is declared... yes 2023-09-26T03:34:08,650 checking for fdatasync... yes 2023-09-26T03:34:09,052 checking for library containing log... -lm 2023-09-26T03:34:09,153 checking for zlib.h... yes 2023-09-26T03:34:09,369 checking for inflate in -lz... yes 2023-09-26T03:34:09,551 checking for library containing recv... none required 2023-09-26T03:34:09,637 checking for bzlib.h... yes 2023-09-26T03:34:09,817 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-09-26T03:34:09,978 checking whether htscodecs files are present... yes 2023-09-26T03:34:09,980 configure: WARNING: GCS support not enabled: requires libcurl support 2023-09-26T03:34:09,980 configure: WARNING: S3 support not enabled: requires libcurl support 2023-09-26T03:34:10,197 checking for library containing regcomp... none required 2023-09-26T03:34:10,271 configure: creating ./config.status 2023-09-26T03:34:10,562 config.status: creating config.mk 2023-09-26T03:34:10,602 config.status: creating htslib.pc.tmp 2023-09-26T03:34:10,645 config.status: creating config.h 2023-09-26T03:34:10,676 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-09-26T03:34:10,844 [ 17%] Performing build step for 'htslib' 2023-09-26T03:34:14,748 Updating htscodecs/htscodecs/version.h : #define HTSCODECS_VERSION_TEXT "1.5.1" 2023-09-26T03:35:19,329 [ 20%] No install step for 'htslib' 2023-09-26T03:35:19,450 [ 22%] Completed 'htslib' 2023-09-26T03:35:19,674 [ 22%] Built target htslib 2023-09-26T03:35:19,802 [ 25%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-09-26T03:35:32,008 [ 28%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-09-26T03:35:36,612 [ 31%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-09-26T03:35:39,824 [ 34%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-09-26T03:35:44,575 [ 37%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-09-26T03:35:48,234 [ 40%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-09-26T03:35:50,315 [ 42%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-09-26T03:35:51,663 [ 45%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-09-26T03:35:52,648 [ 48%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-09-26T03:35:53,836 [ 51%] Linking CXX shared module /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so 2023-09-26T03:35:55,126 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-26T03:35:55,127 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-26T03:36:02,305 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-09-26T03:36:02,307 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GVec.hh:107:24: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-09-26T03:36:02,308 107 | fArray=new OBJ[NewCapacity]; 2023-09-26T03:36:02,308 | ^ 2023-09-26T03:36:02,309 /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-09-26T03:36:02,310 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-09-26T03:36:02,311 | ^ 2023-09-26T03:36:05,648 In member function ‘Push’, 2023-09-26T03:36:05,648 inlined from ‘fgetline’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.cpp:530:11, 2023-09-26T03:36:05,649 inlined from ‘start’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/tmerge.cpp:360:28, 2023-09-26T03:36:05,649 inlined from ‘splam_extract’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_extract.cpp:182:37: 2023-09-26T03:36:05,650 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-26T03:36:05,651 564 | GDynArray_ADD(item); 2023-09-26T03:36:05,651 | ^ 2023-09-26T03:36:05,652 In function ‘GRealloc’, 2023-09-26T03:36:05,652 inlined from ‘Clear’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:633:6, 2023-09-26T03:36:05,653 inlined from ‘growTo’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:577:28, 2023-09-26T03:36:05,654 inlined from ‘Grow’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:544:12, 2023-09-26T03:36:05,654 inlined from ‘Push’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:564:6, 2023-09-26T03:36:05,655 inlined from ‘fgetline’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.cpp:530:11, 2023-09-26T03:36:05,655 inlined from ‘start’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/tmerge.cpp:360:28, 2023-09-26T03:36:05,656 inlined from ‘splam_extract’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_extract.cpp:182:37: 2023-09-26T03:36:05,657 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:280:21: note: at offset -1 into destination object of size 16 allocated by ‘realloc’ 2023-09-26T03:36:05,657 280 | void *p=realloc(*ptr,size); 2023-09-26T03:36:05,658 | ^ 2023-09-26T03:36:05,659 In member function ‘Push’, 2023-09-26T03:36:05,659 inlined from ‘fgetline’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.cpp:530:11, 2023-09-26T03:36:05,660 inlined from ‘start’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/tmerge.cpp:360:28, 2023-09-26T03:36:05,661 inlined from ‘splam_extract’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_extract.cpp:182:37: 2023-09-26T03:36:05,661 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-26T03:36:05,662 564 | GDynArray_ADD(item); 2023-09-26T03:36:05,663 | ^ 2023-09-26T03:36:05,663 In function ‘GRealloc’, 2023-09-26T03:36:05,664 inlined from ‘Clear’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:633:6, 2023-09-26T03:36:05,664 inlined from ‘growTo’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:577:28, 2023-09-26T03:36:05,665 inlined from ‘Grow’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:544:12, 2023-09-26T03:36:05,666 inlined from ‘Push’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:564:6, 2023-09-26T03:36:05,666 inlined from ‘fgetline’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.cpp:530:11, 2023-09-26T03:36:05,667 inlined from ‘start’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/tmerge.cpp:360:28, 2023-09-26T03:36:05,668 inlined from ‘splam_extract’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_extract.cpp:182:37: 2023-09-26T03:36:05,669 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:272:20: note: at offset -1 into destination object of size 16 allocated by ‘malloc’ 2023-09-26T03:36:05,670 272 | void *p=malloc(size); 2023-09-26T03:36:05,671 | ^ 2023-09-26T03:36:17,401 [ 51%] Built target splam_extract 2023-09-26T03:36:17,504 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-09-26T03:36:23,701 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-09-26T03:36:23,701 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,702 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T03:36:23,703 | ^~~~~~~~~~ 2023-09-26T03:36:23,703 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,704 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T03:36:23,705 | ^~~~~~ 2023-09-26T03:36:23,705 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,706 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T03:36:23,707 | ^~~~ 2023-09-26T03:36:23,707 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,708 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T03:36:23,709 | ^~~~ 2023-09-26T03:36:23,710 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,710 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T03:36:23,711 | ^~~~~~~~~~ 2023-09-26T03:36:23,712 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,712 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T03:36:23,713 | ^~~~~~ 2023-09-26T03:36:23,714 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,714 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T03:36:23,715 | ^~~~ 2023-09-26T03:36:23,716 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,717 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T03:36:23,717 | ^~~~ 2023-09-26T03:36:23,718 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,718 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T03:36:23,719 | ^~~~~~~~~~ 2023-09-26T03:36:23,719 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,720 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T03:36:23,721 | ^~~~~~~ 2023-09-26T03:36:23,721 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,722 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T03:36:23,723 | ^~~~ 2023-09-26T03:36:23,724 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,725 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T03:36:23,725 | ^~~~ 2023-09-26T03:36:23,726 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,727 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T03:36:23,727 | ^~~~ 2023-09-26T03:36:23,728 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,729 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T03:36:23,729 | ^~~~~~~~~~ 2023-09-26T03:36:23,730 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,731 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T03:36:23,732 | ^~~~~~~ 2023-09-26T03:36:23,732 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,733 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T03:36:23,734 | ^~~~ 2023-09-26T03:36:23,734 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,735 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T03:36:23,735 | ^~~~ 2023-09-26T03:36:23,736 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:36:23,737 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T03:36:23,737 | ^~~~ 2023-09-26T03:36:29,847 [ 57%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-09-26T03:36:39,506 [ 60%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-09-26T03:36:40,078 [ 62%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-09-26T03:36:40,685 [ 65%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-09-26T03:36:41,022 [ 68%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-09-26T03:36:43,149 [ 71%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-09-26T03:36:46,359 [ 74%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-09-26T03:36:50,951 [ 77%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-09-26T03:36:56,270 [ 80%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-09-26T03:37:01,105 [ 82%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-09-26T03:37:05,884 [ 85%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-09-26T03:37:09,552 [ 88%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-09-26T03:37:11,629 [ 91%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-09-26T03:37:12,978 [ 94%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-09-26T03:37:13,968 [ 97%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-09-26T03:37:15,165 [100%] Linking CXX shared module /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so 2023-09-26T03:37:16,157 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-26T03:37:16,157 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-26T03:37:37,507 [100%] Built target splam_clean 2023-09-26T03:37:37,868 -- The C compiler identification is GNU 12.2.0 2023-09-26T03:37:38,186 -- The CXX compiler identification is GNU 12.2.0 2023-09-26T03:37:38,238 -- Detecting C compiler ABI info 2023-09-26T03:37:38,614 -- Detecting C compiler ABI info - done 2023-09-26T03:37:38,680 -- Check for working C compiler: /usr/bin/cc - skipped 2023-09-26T03:37:38,682 -- Detecting C compile features 2023-09-26T03:37:38,684 -- Detecting C compile features - done 2023-09-26T03:37:38,705 -- Detecting CXX compiler ABI info 2023-09-26T03:37:39,127 -- Detecting CXX compiler ABI info - done 2023-09-26T03:37:39,175 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-09-26T03:37:39,177 -- Detecting CXX compile features 2023-09-26T03:37:39,180 -- Detecting CXX compile features - done 2023-09-26T03:37:39,205 -- pybind11 v2.11.0 dev1 2023-09-26T03:37:39,287 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.6") 2023-09-26T03:37:39,367 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.11.so 2023-09-26T03:37:39,376 -- Performing Test HAS_FLTO 2023-09-26T03:37:39,980 -- Performing Test HAS_FLTO - Success 2023-09-26T03:37:40,028 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 2023-09-26T03:37:40,028 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/htslib 2023-09-26T03:37:40,029 LIBRARY_OUTPUT_DIRECTORY: 2023-09-26T03:37:40,139 EXAMPLE_VERSION_INFO: 1.0.0 2023-09-26T03:37:40,140 -- Configuring done 2023-09-26T03:37:40,235 -- Generating done 2023-09-26T03:37:40,247 -- Build files have been written to: /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/build/temp.linux-armv7l-cpython-311/splam_clean 2023-09-26T03:37:40,488 [ 2%] Creating directories for 'htslib' 2023-09-26T03:37:40,606 [ 5%] No download step for 'htslib' 2023-09-26T03:37:40,721 [ 8%] No update step for 'htslib' 2023-09-26T03:37:40,835 [ 11%] No patch step for 'htslib' 2023-09-26T03:37:40,989 [ 14%] Performing configure step for 'htslib' 2023-09-26T03:37:44,820 checking for gcc... gcc 2023-09-26T03:37:45,894 checking whether the C compiler works... yes 2023-09-26T03:37:45,895 checking for C compiler default output file name... a.out 2023-09-26T03:37:46,067 checking for suffix of executables... 2023-09-26T03:37:46,261 checking whether we are cross compiling... no 2023-09-26T03:37:46,343 checking for suffix of object files... o 2023-09-26T03:37:46,414 checking whether the compiler supports GNU C... yes 2023-09-26T03:37:46,486 checking whether gcc accepts -g... yes 2023-09-26T03:37:46,669 checking for gcc option to enable C11 features... none needed 2023-09-26T03:37:46,674 checking for ranlib... ranlib 2023-09-26T03:37:46,686 checking for grep that handles long lines and -e... /usr/bin/grep 2023-09-26T03:37:46,793 checking for C compiler warning flags... -Wall 2023-09-26T03:37:46,962 checking for gcc options needed to detect all undeclared functions... none needed 2023-09-26T03:37:47,052 checking for stdio.h... yes 2023-09-26T03:37:47,159 checking for stdlib.h... yes 2023-09-26T03:37:47,274 checking for string.h... yes 2023-09-26T03:37:47,391 checking for inttypes.h... yes 2023-09-26T03:37:47,509 checking for stdint.h... yes 2023-09-26T03:37:47,664 checking for strings.h... yes 2023-09-26T03:37:47,785 checking for sys/stat.h... yes 2023-09-26T03:37:47,908 checking for sys/types.h... yes 2023-09-26T03:37:48,040 checking for unistd.h... yes 2023-09-26T03:37:48,191 checking for sys/param.h... yes 2023-09-26T03:37:48,393 checking whether _XOPEN_SOURCE is declared... no 2023-09-26T03:37:48,575 checking C compiler flags needed for ssse3... none 2023-09-26T03:37:48,746 checking C compiler flags needed for popcnt... none 2023-09-26T03:37:48,917 checking C compiler flags needed for sse4.1... none 2023-09-26T03:37:49,089 checking C compiler flags needed for avx2... none 2023-09-26T03:37:49,296 checking C compiler flags needed for avx512f... none 2023-09-26T03:37:49,299 checking for pkg-config... /usr/bin/pkg-config 2023-09-26T03:37:49,305 checking pkg-config is at least version 0.9.0... yes 2023-09-26T03:37:49,307 checking for special C compiler options needed for large files... no 2023-09-26T03:37:49,486 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-09-26T03:37:49,499 checking shared library type for unknown-Linux... plain .so 2023-09-26T03:37:49,676 checking whether the linker supports versioned symbols... yes 2023-09-26T03:37:49,853 checking whether the compiler accepts -fvisibility=hidden... yes 2023-09-26T03:37:50,117 checking build system type... armv7l-unknown-linux-gnueabihf 2023-09-26T03:37:50,118 checking host system type... armv7l-unknown-linux-gnueabihf 2023-09-26T03:37:50,300 checking for getpagesize... yes 2023-09-26T03:37:50,633 checking for working mmap... yes 2023-09-26T03:37:50,846 checking for gmtime_r... yes 2023-09-26T03:37:51,247 checking for fsync... yes 2023-09-26T03:37:51,431 checking for drand48... yes 2023-09-26T03:37:51,671 checking for srand48_deterministic... no 2023-09-26T03:37:51,842 checking whether fdatasync is declared... yes 2023-09-26T03:37:52,026 checking for fdatasync... yes 2023-09-26T03:37:52,479 checking for library containing log... -lm 2023-09-26T03:37:52,635 checking for zlib.h... yes 2023-09-26T03:37:52,817 checking for inflate in -lz... yes 2023-09-26T03:37:53,003 checking for library containing recv... none required 2023-09-26T03:37:53,095 checking for bzlib.h... yes 2023-09-26T03:37:53,309 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-09-26T03:37:53,403 checking whether htscodecs files are present... yes 2023-09-26T03:37:53,404 configure: WARNING: GCS support not enabled: requires libcurl support 2023-09-26T03:37:53,405 configure: WARNING: S3 support not enabled: requires libcurl support 2023-09-26T03:37:53,586 checking for library containing regcomp... none required 2023-09-26T03:37:53,651 configure: creating ./config.status 2023-09-26T03:37:53,941 config.status: creating config.mk 2023-09-26T03:37:53,980 config.status: creating htslib.pc.tmp 2023-09-26T03:37:54,041 config.status: creating config.h 2023-09-26T03:37:54,066 config.status: config.h is unchanged 2023-09-26T03:37:54,074 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-09-26T03:37:54,313 [ 17%] Performing build step for 'htslib' 2023-09-26T03:37:54,935 [ 20%] No install step for 'htslib' 2023-09-26T03:37:55,335 [ 22%] Completed 'htslib' 2023-09-26T03:37:55,493 [ 22%] Built target htslib 2023-09-26T03:37:55,593 [ 25%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-09-26T03:38:07,731 [ 28%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-09-26T03:38:12,372 [ 31%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-09-26T03:38:15,628 [ 34%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-09-26T03:38:20,370 [ 37%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-09-26T03:38:24,016 [ 40%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-09-26T03:38:26,137 [ 42%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-09-26T03:38:27,503 [ 45%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-09-26T03:38:28,486 [ 48%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-09-26T03:38:29,677 [ 51%] Linking CXX shared module /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so 2023-09-26T03:38:30,996 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-26T03:38:30,997 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-26T03:38:38,179 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-09-26T03:38:38,179 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GVec.hh:107:24: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-09-26T03:38:38,180 107 | fArray=new OBJ[NewCapacity]; 2023-09-26T03:38:38,180 | ^ 2023-09-26T03:38:38,181 /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-09-26T03:38:38,181 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-09-26T03:38:38,182 | ^ 2023-09-26T03:38:41,513 In member function ‘Push’, 2023-09-26T03:38:41,514 inlined from ‘fgetline’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.cpp:530:11, 2023-09-26T03:38:41,515 inlined from ‘start’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/tmerge.cpp:360:28, 2023-09-26T03:38:41,515 inlined from ‘splam_extract’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_extract.cpp:182:37: 2023-09-26T03:38:41,515 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-26T03:38:41,516 564 | GDynArray_ADD(item); 2023-09-26T03:38:41,517 | ^ 2023-09-26T03:38:41,517 In function ‘GRealloc’, 2023-09-26T03:38:41,518 inlined from ‘Clear’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:633:6, 2023-09-26T03:38:41,519 inlined from ‘growTo’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:577:28, 2023-09-26T03:38:41,519 inlined from ‘Grow’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:544:12, 2023-09-26T03:38:41,520 inlined from ‘Push’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:564:6, 2023-09-26T03:38:41,521 inlined from ‘fgetline’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.cpp:530:11, 2023-09-26T03:38:41,522 inlined from ‘start’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/tmerge.cpp:360:28, 2023-09-26T03:38:41,522 inlined from ‘splam_extract’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_extract.cpp:182:37: 2023-09-26T03:38:41,523 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:280:21: note: at offset -1 into destination object of size 16 allocated by ‘realloc’ 2023-09-26T03:38:41,523 280 | void *p=realloc(*ptr,size); 2023-09-26T03:38:41,524 | ^ 2023-09-26T03:38:41,525 In member function ‘Push’, 2023-09-26T03:38:41,525 inlined from ‘fgetline’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.cpp:530:11, 2023-09-26T03:38:41,526 inlined from ‘start’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/tmerge.cpp:360:28, 2023-09-26T03:38:41,527 inlined from ‘splam_extract’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_extract.cpp:182:37: 2023-09-26T03:38:41,527 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-26T03:38:41,528 564 | GDynArray_ADD(item); 2023-09-26T03:38:41,529 | ^ 2023-09-26T03:38:41,529 In function ‘GRealloc’, 2023-09-26T03:38:41,530 inlined from ‘Clear’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:633:6, 2023-09-26T03:38:41,530 inlined from ‘growTo’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:577:28, 2023-09-26T03:38:41,531 inlined from ‘Grow’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:544:12, 2023-09-26T03:38:41,531 inlined from ‘Push’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:564:6, 2023-09-26T03:38:41,531 inlined from ‘fgetline’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.cpp:530:11, 2023-09-26T03:38:41,532 inlined from ‘start’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/tmerge.cpp:360:28, 2023-09-26T03:38:41,532 inlined from ‘splam_extract’ at /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_extract.cpp:182:37: 2023-09-26T03:38:41,533 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/include/gclib/GBase.h:272:20: note: at offset -1 into destination object of size 16 allocated by ‘malloc’ 2023-09-26T03:38:41,533 272 | void *p=malloc(size); 2023-09-26T03:38:41,534 | ^ 2023-09-26T03:38:53,295 [ 51%] Built target splam_extract 2023-09-26T03:38:53,415 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-09-26T03:38:59,733 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-09-26T03:38:59,733 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,734 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T03:38:59,735 | ^~~~~~~~~~ 2023-09-26T03:38:59,735 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,736 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T03:38:59,737 | ^~~~~~ 2023-09-26T03:38:59,738 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,738 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T03:38:59,739 | ^~~~ 2023-09-26T03:38:59,739 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,740 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T03:38:59,741 | ^~~~ 2023-09-26T03:38:59,741 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,742 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T03:38:59,743 | ^~~~~~~~~~ 2023-09-26T03:38:59,743 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,744 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T03:38:59,744 | ^~~~~~ 2023-09-26T03:38:59,745 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,746 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T03:38:59,746 | ^~~~ 2023-09-26T03:38:59,747 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,747 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T03:38:59,748 | ^~~~ 2023-09-26T03:38:59,749 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,750 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T03:38:59,750 | ^~~~~~~~~~ 2023-09-26T03:38:59,751 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,752 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T03:38:59,752 | ^~~~~~~ 2023-09-26T03:38:59,753 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,753 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T03:38:59,754 | ^~~~ 2023-09-26T03:38:59,755 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,756 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T03:38:59,756 | ^~~~ 2023-09-26T03:38:59,757 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,758 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T03:38:59,758 | ^~~~ 2023-09-26T03:38:59,759 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,759 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T03:38:59,760 | ^~~~~~~~~~ 2023-09-26T03:38:59,760 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,761 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T03:38:59,762 | ^~~~~~~ 2023-09-26T03:38:59,762 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,763 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T03:38:59,763 | ^~~~ 2023-09-26T03:38:59,764 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,765 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T03:38:59,766 | ^~~~ 2023-09-26T03:38:59,766 /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T03:38:59,767 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T03:38:59,768 | ^~~~ 2023-09-26T03:39:05,781 [ 57%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-09-26T03:39:15,406 [ 60%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-09-26T03:39:15,976 [ 62%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-09-26T03:39:16,554 [ 65%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-09-26T03:39:16,885 [ 68%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-09-26T03:39:19,059 [ 71%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-09-26T03:39:22,643 [ 74%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-09-26T03:39:27,276 [ 77%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-09-26T03:39:32,919 [ 80%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-09-26T03:39:38,120 [ 82%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-09-26T03:39:42,901 [ 85%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-09-26T03:39:46,915 [ 88%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-09-26T03:39:49,975 [ 91%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-09-26T03:39:51,407 [ 94%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-09-26T03:39:52,417 [ 97%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-09-26T03:39:53,650 [100%] Linking CXX shared module /tmp/pip-wheel-q6vko1bv/splam_6ffccc076cf54606b21a01fe9753c6bb/build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so 2023-09-26T03:39:54,653 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-26T03:39:54,654 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-26T03:40:15,936 [100%] Built target splam_clean 2023-09-26T03:40:16,034 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-26T03:40:16,035 !! 2023-09-26T03:40:16,036 ******************************************************************************** 2023-09-26T03:40:16,037 Please avoid running ``setup.py`` directly. 2023-09-26T03:40:16,037 Instead, use pypa/build, pypa/installer or other 2023-09-26T03:40:16,038 standards-based tools. 2023-09-26T03:40:16,039 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-26T03:40:16,040 ******************************************************************************** 2023-09-26T03:40:16,041 !! 2023-09-26T03:40:16,042 self.initialize_options() 2023-09-26T03:40:16,063 installing to build/bdist.linux-armv7l/wheel 2023-09-26T03:40:16,064 running install 2023-09-26T03:40:16,089 running install_lib 2023-09-26T03:40:16,113 creating build/bdist.linux-armv7l 2023-09-26T03:40:16,114 creating build/bdist.linux-armv7l/wheel 2023-09-26T03:40:16,116 copying build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-09-26T03:40:16,145 creating build/bdist.linux-armv7l/wheel/splam 2023-09-26T03:40:16,146 copying build/lib.linux-armv7l-cpython-311/splam/__init__.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T03:40:16,149 copying build/lib.linux-armv7l-cpython-311/splam/extract_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T03:40:16,151 copying build/lib.linux-armv7l-cpython-311/splam/header.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T03:40:16,153 copying build/lib.linux-armv7l-cpython-311/splam/SPLAM.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T03:40:16,155 copying build/lib.linux-armv7l-cpython-311/splam/parse.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T03:40:16,157 copying build/lib.linux-armv7l-cpython-311/splam/chr_size.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T03:40:16,160 copying build/lib.linux-armv7l-cpython-311/splam/clean_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T03:40:16,163 copying build/lib.linux-armv7l-cpython-311/splam/config.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T03:40:16,165 copying build/lib.linux-armv7l-cpython-311/splam/helper.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T03:40:16,167 copying build/lib.linux-armv7l-cpython-311/splam/main.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T03:40:16,169 copying build/lib.linux-armv7l-cpython-311/splam/prediction.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T03:40:16,172 copying build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-09-26T03:40:16,196 running install_egg_info 2023-09-26T03:40:16,257 running egg_info 2023-09-26T03:40:16,283 writing splam.egg-info/PKG-INFO 2023-09-26T03:40:16,286 writing dependency_links to splam.egg-info/dependency_links.txt 2023-09-26T03:40:16,287 writing entry points to splam.egg-info/entry_points.txt 2023-09-26T03:40:16,289 writing requirements to splam.egg-info/requires.txt 2023-09-26T03:40:16,290 writing top-level names to splam.egg-info/top_level.txt 2023-09-26T03:40:16,318 reading manifest file 'splam.egg-info/SOURCES.txt' 2023-09-26T03:40:16,505 reading manifest template 'MANIFEST.in' 2023-09-26T03:40:16,771 adding license file 'LICENSE' 2023-09-26T03:40:16,826 writing manifest file 'splam.egg-info/SOURCES.txt' 2023-09-26T03:40:16,829 Copying splam.egg-info to build/bdist.linux-armv7l/wheel/splam-1.0.0-py3.11.egg-info 2023-09-26T03:40:16,840 running install_scripts 2023-09-26T03:40:16,893 creating build/bdist.linux-armv7l/wheel/splam-1.0.0.dist-info/WHEEL 2023-09-26T03:40:16,896 creating '/tmp/pip-wheel-_e1a714t/splam-1.0.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-26T03:40:17,185 adding 'splam_clean.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T03:40:17,465 adding 'splam_extract.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T03:40:17,477 adding 'splam/SPLAM.py' 2023-09-26T03:40:17,478 adding 'splam/__init__.py' 2023-09-26T03:40:17,484 adding 'splam/chr_size.py' 2023-09-26T03:40:17,486 adding 'splam/clean_gff.py' 2023-09-26T03:40:17,487 adding 'splam/config.py' 2023-09-26T03:40:17,489 adding 'splam/extract_gff.py' 2023-09-26T03:40:17,490 adding 'splam/header.py' 2023-09-26T03:40:17,492 adding 'splam/helper.py' 2023-09-26T03:40:17,494 adding 'splam/main.py' 2023-09-26T03:40:17,496 adding 'splam/parse.py' 2023-09-26T03:40:17,497 adding 'splam/prediction.py' 2023-09-26T03:40:17,500 adding 'splam-1.0.0.dist-info/LICENSE' 2023-09-26T03:40:17,501 adding 'splam-1.0.0.dist-info/METADATA' 2023-09-26T03:40:17,501 adding 'splam-1.0.0.dist-info/WHEEL' 2023-09-26T03:40:17,503 adding 'splam-1.0.0.dist-info/entry_points.txt' 2023-09-26T03:40:17,503 adding 'splam-1.0.0.dist-info/top_level.txt' 2023-09-26T03:40:17,504 adding 'splam-1.0.0.dist-info/RECORD' 2023-09-26T03:40:17,515 removing build/bdist.linux-armv7l/wheel 2023-09-26T03:40:17,632 Building wheel for splam (setup.py): finished with status 'done' 2023-09-26T03:40:17,646 Created wheel for splam: filename=splam-1.0.0-cp311-cp311-linux_armv7l.whl size=920337 sha256=e8c3f060783b051d826051003c912986edb4ea0501a48a4dffd6184dc0e9ece4 2023-09-26T03:40:17,648 Stored in directory: /tmp/pip-ephem-wheel-cache-rtxnj427/wheels/00/c0/03/fa4ec80504a751efebd67c688ff219e7d226594985994338cb 2023-09-26T03:40:17,657 Successfully built splam 2023-09-26T03:40:17,689 Removed build tracker: '/tmp/pip-build-tracker-q16u9kix'