2023-09-26T05:06:36,728 Created temporary directory: /tmp/pip-build-tracker-x1dwuz1_ 2023-09-26T05:06:36,729 Initialized build tracking at /tmp/pip-build-tracker-x1dwuz1_ 2023-09-26T05:06:36,729 Created build tracker: /tmp/pip-build-tracker-x1dwuz1_ 2023-09-26T05:06:36,729 Entered build tracker: /tmp/pip-build-tracker-x1dwuz1_ 2023-09-26T05:06:36,730 Created temporary directory: /tmp/pip-wheel-3a3ldqxi 2023-09-26T05:06:36,733 Created temporary directory: /tmp/pip-ephem-wheel-cache-fehhr8h8 2023-09-26T05:06:36,755 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-26T05:06:36,759 2 location(s) to search for versions of splam: 2023-09-26T05:06:36,759 * https://pypi.org/simple/splam/ 2023-09-26T05:06:36,759 * https://www.piwheels.org/simple/splam/ 2023-09-26T05:06:36,760 Fetching project page and analyzing links: https://pypi.org/simple/splam/ 2023-09-26T05:06:36,761 Getting page https://pypi.org/simple/splam/ 2023-09-26T05:06:36,762 Found index url https://pypi.org/simple/ 2023-09-26T05:06:36,977 Fetched page https://pypi.org/simple/splam/ as application/vnd.pypi.simple.v1+json 2023-09-26T05:06:36,987 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/57/2a/d68f86c46b3152c9072975cb1c8b3f2345e0f71cea763c0635ca8c5e0261/splam-0.2.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:36,988 Found link https://files.pythonhosted.org/packages/ba/e8/4cf0f802bf26fd6587829e3688109caef6d26e13d19ce003ac876212da15/splam-0.2.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.9 2023-09-26T05:06:36,988 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f0/97/c31f00ac8a786213c4a50dd993cd04e61af08766e9559f244fb9c3929178/splam-0.2.10-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:36,989 Found link https://files.pythonhosted.org/packages/72/d1/671663c98d0cfca3218b880633390493fcebf9972175a7c4d2752259f2ea/splam-0.2.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.10 2023-09-26T05:06:36,990 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/ad/36/84239a43f206dfbfe07c6e6f76ef8c54235439210640aeacc8cb20e24c2e/splam-0.2.11-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:36,991 Found link https://files.pythonhosted.org/packages/c7/b3/96a175c203358d735694d7d5fd9261ef8683af968e14e473e823d159cee1/splam-0.2.11.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.11 2023-09-26T05:06:36,992 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/a5/f5/e15307ccb65ec9c225b7f1af65ee2c8880ba8eb049d386f4c9da459b2e1e/splam-0.2.12-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:36,993 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ba/88/6cac004352d4aa92aabdfd31f9b96919f8044db486185d3fd3c924583bc8/splam-0.2.12-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:36,994 Found link https://files.pythonhosted.org/packages/32/fa/a9795e9df88e8ea6c6788ae171702d5f9d8ce2c3472408ab0784f08a7b91/splam-0.2.12.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.12 2023-09-26T05:06:36,994 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/59/88/fefee12f8e44d6879a0970d37b42fc4dc54010f78b1ee91f6db366c1f125/splam-0.2.13-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:36,995 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/64/13/d601e5e99b31891d95bc0a6201367dab38f12faaadcb6aedbee7725dca71/splam-0.2.13-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:36,996 Found link https://files.pythonhosted.org/packages/cf/fb/2e5425fcdb2e5fd7ff963b174b1582816154fd0373bbc96edf4e851d272d/splam-0.2.13.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.13 2023-09-26T05:06:36,997 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/da/65/a129eabb1d673da72f1d7dfd3495c01c89da78569b7f2dba2c746a0c0f29/splam-0.2.14-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:36,997 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/79/2fdaa68664126c8c71bac526b41e1e35e4195879170c8129a8d482f3ae7b/splam-0.2.14-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:36,998 Found link https://files.pythonhosted.org/packages/9b/3f/d7dd2411528494ed5062665c3b5d5d7d8422fd11fa181d5fc01ea67d7dbf/splam-0.2.14.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.14 2023-09-26T05:06:36,998 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f4/9a/e7d1f5f16d77888ac5d0935e180fa2210e875ff487909519d6871e1301da/splam-0.2.15-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:36,999 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/40/b6/eda61824794c736e52c09353dfbbd70eea4d0f0ab31896f3688d269ab64b/splam-0.2.15-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,000 Found link https://files.pythonhosted.org/packages/29/d0/5e9ef93e49636308cb56b70a06c8932321cb60a4aae678d8bb1d213b52b5/splam-0.2.15.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.15 2023-09-26T05:06:37,000 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e5/17/caa4b05a6370f2d197ec174fe1968f63acc357db5923efca0860b3a5e141/splam-0.2.16-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,001 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fe/a5/d90a02293e34acf5515a8f435ae90afeb823336d6232a7bedf01436a00f9/splam-0.2.17-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,001 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ef/af/7db5183d8c36a250bb4547c58610624b4d1067ea0eb119addc8986ce6ec1/splam-0.2.17-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,002 Found link https://files.pythonhosted.org/packages/26/3a/0e89dd56f9617853061d7c4ed6a220a414a01bba9f0005e54da52a1ad22e/splam-0.2.17.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.17 2023-09-26T05:06:37,003 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/bd/50/ae02dcd9e7c53df59acc9ad83ac389a886e55254cd6953614d43f0eaac60/splam-0.3.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,004 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/78/0b/8b0b45b16922007f88c9b81357cde8b84f9ea45327104b00724024e722ec/splam-0.3.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,004 Found link https://files.pythonhosted.org/packages/e5/c7/4bf13e849aefc7cfdd94f142e6267e4937c61d7fb9fbfe1119953f6a5e72/splam-0.3.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.3.0 2023-09-26T05:06:37,005 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/55/d8079e937d1f568ac9358237871b9d4d6d28abf1e8e8ec2b8073db7b166a/splam-0.3.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,006 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6d/9f/5e7c396bd04da9866f89f51574bd3fec1e691b279116e4d4de92b75b6538/splam-1.0.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,006 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/56/ae/c9e443ec09db88b2b2aaa18ebc6b12751b321d731ce21964ee188067bb0f/splam-1.0.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,007 Found link https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.0 2023-09-26T05:06:37,008 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/43/45/27c64605655d3127bf6155bc060f98fb565e631553e4f0e0a53d3922ebf3/splam-1.0.1-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,008 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/4d/0b5427df4d5d74ba5a98e28805b45fee4b15d2cad1e9aa91069306c29da7/splam-1.0.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,009 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/da/e1/11ee65eb50a2f628f92249d84cd72eddbc1386afbc82c7410fceb627d995/splam-1.0.1-py3.9-linux-x86_64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,009 Found link https://files.pythonhosted.org/packages/ad/3c/5a2fcc44ca9afa6bc1cb4fe6a30ba6495f9c1359c6b610536cb6c7998ca1/splam-1.0.1.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.1 2023-09-26T05:06:37,010 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6a/e7/e7827b0d637f018ef8d18ea969985ce37ffa520fd1bf6d0e8d43d72b749e/splam-1.0.2-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,011 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f2/ba/94da0985b6db88ba663b4e56a395d74d04283a79d0fdf476763251f5679f/splam-1.0.2-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,012 Found link https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.2 2023-09-26T05:06:37,012 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/30/c9/23c10c8ee217996cc58e6f16ffc732657d1cb3011f7cbc41ebb51927bbbb/splam-1.0.3-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,013 Found link https://files.pythonhosted.org/packages/b3/80/1ff08f5e516c2ce233a75e61e8ce3dacc34b00bd2cae4fae0d01b0d758e9/splam-1.0.3.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.3 2023-09-26T05:06:37,014 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/70/bd/3aacba5a589a5a8d4688781f1376a822b1df05526355738a85f10a6f0c86/splam-1.0.4-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,015 Found link https://files.pythonhosted.org/packages/b3/ef/1c49f24a396880a7ac6773041c067d1418ca533df5018de37f1fb49f512a/splam-1.0.4.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.4 2023-09-26T05:06:37,015 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/54/7e/ce14252ed5cbc26ad69ffe8ec6909d91f2bed9f97749fb5ba0f43a935479/splam-1.0.5-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,016 Found link https://files.pythonhosted.org/packages/5f/dd/ac054961585d4e5d71c889e8840dc096a847ac38b04295f38dbe524718e5/splam-1.0.5.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.5 2023-09-26T05:06:37,017 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f7/1e/02d35d67ba3f32f629f40824705e8ef82b6a80914fef3ffa59bcea67c965/splam-1.0.6-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,018 Found link https://files.pythonhosted.org/packages/b2/7d/e8f8b51f071b0bc4e2a1a0cc31db50c9acecb68271cd5bd5e113c7442fed/splam-1.0.6.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.6 2023-09-26T05:06:37,019 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/1d/57/3fbf056633d3332ab938f761553161346599e27c5f5c66f605c08b4fb2b3/splam-1.0.7-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,019 Found link https://files.pythonhosted.org/packages/a5/b6/ffa6c7c753ce7d9989d0e3adcb5310ecf29429dce73ffe51f2b63434c9fc/splam-1.0.7.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.7 2023-09-26T05:06:37,020 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/35/fa/76bf21536e4f60a1caae0132889ab74457d9c75a9476c3d0ec7b578870af/splam-1.0.8-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,021 Found link https://files.pythonhosted.org/packages/a5/ad/6d3495d79895726b6df06f3cd667006e5316fa3235e6919b841057f6e666/splam-1.0.8.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.8 2023-09-26T05:06:37,021 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fc/24/c13538db2c354993494537d33e4138e39d65e83f947f55d6f9d599e12a63/splam-1.0.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,022 Found link https://files.pythonhosted.org/packages/4d/2c/303bafdffb18df8357ea5c7f2bc00f9e4afd9667b9f10b411091c3adc293/splam-1.0.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.9 2023-09-26T05:06:37,023 Fetching project page and analyzing links: https://www.piwheels.org/simple/splam/ 2023-09-26T05:06:37,024 Getting page https://www.piwheels.org/simple/splam/ 2023-09-26T05:06:37,025 Found index url https://www.piwheels.org/simple/ 2023-09-26T05:06:37,182 Fetched page https://www.piwheels.org/simple/splam/ as text/html 2023-09-26T05:06:37,194 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=7453657a38dcf0d7c2daaf93faf6a2938e28d036a3910105918ccff02dc54ca0 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,195 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=7453657a38dcf0d7c2daaf93faf6a2938e28d036a3910105918ccff02dc54ca0 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,196 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=c708c1c8ebbbb979a2a34a938458ac9a9555c23555f3385e0dd5b014a62f7c27 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,196 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=c708c1c8ebbbb979a2a34a938458ac9a9555c23555f3385e0dd5b014a62f7c27 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,197 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=dfd90ff647e7d082d2fc0c7fb31267ff57904b1f695afa56a45f1edfbe66dd36 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,197 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=dfd90ff647e7d082d2fc0c7fb31267ff57904b1f695afa56a45f1edfbe66dd36 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,198 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.2-cp37-cp37m-linux_armv7l.whl#sha256=0da1ce51d76a21042b3077b98b6ada39416083c473650dd277efe9003015c43f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,199 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.2-cp37-cp37m-linux_armv6l.whl#sha256=0da1ce51d76a21042b3077b98b6ada39416083c473650dd277efe9003015c43f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,199 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=c18773cbb40b6f9c9732a88256f613f6c52b279fcd6ab28bbafa17768ae51a09 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,199 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=c18773cbb40b6f9c9732a88256f613f6c52b279fcd6ab28bbafa17768ae51a09 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,200 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=1df2348f054c2c94911b9f0f12cb53ffd0d73bbb7a08e64ea0c6783ceee0aff8 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,200 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=1df2348f054c2c94911b9f0f12cb53ffd0d73bbb7a08e64ea0c6783ceee0aff8 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,201 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e8c3f060783b051d826051003c912986edb4ea0501a48a4dffd6184dc0e9ece4 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,201 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e8c3f060783b051d826051003c912986edb4ea0501a48a4dffd6184dc0e9ece4 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,202 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=a8181a29dd75196ac29a057a71ae8aa567d3180e65dbefd5f00ffc44d6ceaabb (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,203 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=a8181a29dd75196ac29a057a71ae8aa567d3180e65dbefd5f00ffc44d6ceaabb (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,203 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=db7f7a90b02b4b219de50c195ee1ca9b24be11aa7f75c3972daa508e5af03ed7 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,204 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=db7f7a90b02b4b219de50c195ee1ca9b24be11aa7f75c3972daa508e5af03ed7 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,204 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp39-cp39-linux_armv7l.whl#sha256=c3a1b0ed2154e6f57b99c5dc2f09741faf5870038b8f86b488481cbc1cea6038 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,205 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp39-cp39-linux_armv6l.whl#sha256=c3a1b0ed2154e6f57b99c5dc2f09741faf5870038b8f86b488481cbc1cea6038 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,205 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp37-cp37m-linux_armv7l.whl#sha256=e995d4cf8f5f1d21c7acb05a431d0a13318d1dfb4fff327949db624e7b3d4406 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,206 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp37-cp37m-linux_armv6l.whl#sha256=e995d4cf8f5f1d21c7acb05a431d0a13318d1dfb4fff327949db624e7b3d4406 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,206 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp39-cp39-linux_armv7l.whl#sha256=61b2ad768b658cf35de2ec1cadc48174bba190e551c2f6e110cef152a0538d0f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,207 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp39-cp39-linux_armv6l.whl#sha256=61b2ad768b658cf35de2ec1cadc48174bba190e551c2f6e110cef152a0538d0f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,207 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp37-cp37m-linux_armv7l.whl#sha256=0a4fa9a067616033f881d9c22e1276e29cc4428f1241db0d262c13609379e2cf (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,208 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp37-cp37m-linux_armv6l.whl#sha256=0a4fa9a067616033f881d9c22e1276e29cc4428f1241db0d262c13609379e2cf (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,208 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv7l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,209 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv6l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,209 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp37-cp37m-linux_armv7l.whl#sha256=198f24795b97dfeeb87bfd8760ef5894be763c7c872f489ea0c4292c781067b6 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,210 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp37-cp37m-linux_armv6l.whl#sha256=198f24795b97dfeeb87bfd8760ef5894be763c7c872f489ea0c4292c781067b6 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,210 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp311-cp311-linux_armv7l.whl#sha256=3358137f046748462107e305dd9d042c880d1ac8e4b165f0ba3872db24bc2175 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,211 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp311-cp311-linux_armv6l.whl#sha256=3358137f046748462107e305dd9d042c880d1ac8e4b165f0ba3872db24bc2175 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,211 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv7l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,212 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv6l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,213 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv7l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,213 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv6l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,214 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv7l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,214 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv6l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,214 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv7l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,215 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv6l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,215 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv7l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,216 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv6l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,216 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv7l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,217 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv6l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:06:37,218 Skipping link: not a file: https://www.piwheels.org/simple/splam/ 2023-09-26T05:06:37,218 Skipping link: not a file: https://pypi.org/simple/splam/ 2023-09-26T05:06:37,238 Given no hashes to check 1 links for project 'splam': discarding no candidates 2023-09-26T05:06:37,256 Collecting splam==1.0.1 2023-09-26T05:06:37,259 Created temporary directory: /tmp/pip-unpack-60sb0y15 2023-09-26T05:06:37,691 Downloading splam-1.0.1.tar.gz (40.6 MB) 2023-09-26T05:06:49,911 Added splam==1.0.1 from https://files.pythonhosted.org/packages/ad/3c/5a2fcc44ca9afa6bc1cb4fe6a30ba6495f9c1359c6b610536cb6c7998ca1/splam-1.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-x1dwuz1_' 2023-09-26T05:06:49,913 Running setup.py (path:/tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/setup.py) egg_info for package splam 2023-09-26T05:06:49,914 Created temporary directory: /tmp/pip-pip-egg-info-a2op9t3_ 2023-09-26T05:06:49,915 Preparing metadata (setup.py): started 2023-09-26T05:06:49,916 Running command python setup.py egg_info 2023-09-26T05:06:50,920 running egg_info 2023-09-26T05:06:50,922 creating /tmp/pip-pip-egg-info-a2op9t3_/splam.egg-info 2023-09-26T05:06:50,945 writing /tmp/pip-pip-egg-info-a2op9t3_/splam.egg-info/PKG-INFO 2023-09-26T05:06:50,948 writing dependency_links to /tmp/pip-pip-egg-info-a2op9t3_/splam.egg-info/dependency_links.txt 2023-09-26T05:06:50,950 writing entry points to /tmp/pip-pip-egg-info-a2op9t3_/splam.egg-info/entry_points.txt 2023-09-26T05:06:50,951 writing requirements to /tmp/pip-pip-egg-info-a2op9t3_/splam.egg-info/requires.txt 2023-09-26T05:06:50,952 writing top-level names to /tmp/pip-pip-egg-info-a2op9t3_/splam.egg-info/top_level.txt 2023-09-26T05:06:50,953 writing manifest file '/tmp/pip-pip-egg-info-a2op9t3_/splam.egg-info/SOURCES.txt' 2023-09-26T05:06:51,029 reading manifest file '/tmp/pip-pip-egg-info-a2op9t3_/splam.egg-info/SOURCES.txt' 2023-09-26T05:06:51,030 reading manifest template 'MANIFEST.in' 2023-09-26T05:06:51,228 adding license file 'LICENSE' 2023-09-26T05:06:51,263 writing manifest file '/tmp/pip-pip-egg-info-a2op9t3_/splam.egg-info/SOURCES.txt' 2023-09-26T05:06:51,373 Preparing metadata (setup.py): finished with status 'done' 2023-09-26T05:06:51,376 Source in /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6 has version 1.0.1, which satisfies requirement splam==1.0.1 from https://files.pythonhosted.org/packages/ad/3c/5a2fcc44ca9afa6bc1cb4fe6a30ba6495f9c1359c6b610536cb6c7998ca1/splam-1.0.1.tar.gz 2023-09-26T05:06:51,377 Removed splam==1.0.1 from https://files.pythonhosted.org/packages/ad/3c/5a2fcc44ca9afa6bc1cb4fe6a30ba6495f9c1359c6b610536cb6c7998ca1/splam-1.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-x1dwuz1_' 2023-09-26T05:06:51,382 Created temporary directory: /tmp/pip-unpack-ch9l6vz0 2023-09-26T05:06:51,383 Created temporary directory: /tmp/pip-unpack-1z5jx912 2023-09-26T05:06:51,393 Building wheels for collected packages: splam 2023-09-26T05:06:51,397 Created temporary directory: /tmp/pip-wheel-1frfm4a4 2023-09-26T05:06:51,397 Building wheel for splam (setup.py): started 2023-09-26T05:06:51,399 Destination directory: /tmp/pip-wheel-1frfm4a4 2023-09-26T05:06:51,399 Running command python setup.py bdist_wheel 2023-09-26T05:06:52,387 running bdist_wheel 2023-09-26T05:06:52,461 running build 2023-09-26T05:06:52,461 running build_py 2023-09-26T05:06:52,488 creating build 2023-09-26T05:06:52,488 creating build/lib.linux-armv7l-cpython-311 2023-09-26T05:06:52,489 creating build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:06:52,490 copying splam/clean_gff.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:06:52,493 copying splam/parse.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:06:52,495 copying splam/main.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:06:52,497 copying splam/__init__.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:06:52,498 copying splam/prediction.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:06:52,501 copying splam/SPLAM.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:06:52,502 copying splam/header.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:06:52,504 copying splam/extract_gff.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:06:52,505 copying splam/helper.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:06:52,507 copying splam/chr_size.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:06:52,510 copying splam/config.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:06:52,512 running build_ext 2023-09-26T05:06:52,849 -- The C compiler identification is GNU 12.2.0 2023-09-26T05:06:53,190 -- The CXX compiler identification is GNU 12.2.0 2023-09-26T05:06:53,247 -- Detecting C compiler ABI info 2023-09-26T05:06:53,864 -- Detecting C compiler ABI info - done 2023-09-26T05:06:53,911 -- Check for working C compiler: /usr/bin/cc - skipped 2023-09-26T05:06:53,913 -- Detecting C compile features 2023-09-26T05:06:53,915 -- Detecting C compile features - done 2023-09-26T05:06:53,941 -- Detecting CXX compiler ABI info 2023-09-26T05:06:54,413 -- Detecting CXX compiler ABI info - done 2023-09-26T05:06:54,461 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-09-26T05:06:54,463 -- Detecting CXX compile features 2023-09-26T05:06:54,466 -- Detecting CXX compile features - done 2023-09-26T05:06:54,494 -- pybind11 v2.11.0 dev1 2023-09-26T05:06:54,577 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.6") 2023-09-26T05:06:54,657 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.11.so 2023-09-26T05:06:54,668 -- Performing Test HAS_FLTO 2023-09-26T05:06:55,329 -- Performing Test HAS_FLTO - Success 2023-09-26T05:06:55,381 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 2023-09-26T05:06:55,382 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/htslib 2023-09-26T05:06:55,382 LIBRARY_OUTPUT_DIRECTORY: 2023-09-26T05:06:55,466 EXAMPLE_VERSION_INFO: 1.0.1 2023-09-26T05:06:55,467 -- Configuring done 2023-09-26T05:06:55,563 -- Generating done 2023-09-26T05:06:55,578 -- Build files have been written to: /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/build/temp.linux-armv7l-cpython-311/splam_extract 2023-09-26T05:06:55,844 [ 2%] Creating directories for 'htslib' 2023-09-26T05:06:55,978 [ 5%] No download step for 'htslib' 2023-09-26T05:06:56,093 [ 8%] No update step for 'htslib' 2023-09-26T05:06:56,207 [ 11%] No patch step for 'htslib' 2023-09-26T05:06:56,322 [ 14%] Performing configure step for 'htslib' 2023-09-26T05:07:02,521 checking for gcc... gcc 2023-09-26T05:07:02,896 checking whether the C compiler works... yes 2023-09-26T05:07:02,897 checking for C compiler default output file name... a.out 2023-09-26T05:07:03,058 checking for suffix of executables... 2023-09-26T05:07:03,244 checking whether we are cross compiling... no 2023-09-26T05:07:03,324 checking for suffix of object files... o 2023-09-26T05:07:03,396 checking whether the compiler supports GNU C... yes 2023-09-26T05:07:03,469 checking whether gcc accepts -g... yes 2023-09-26T05:07:03,667 checking for gcc option to enable C11 features... none needed 2023-09-26T05:07:03,670 checking for ranlib... ranlib 2023-09-26T05:07:03,678 checking for grep that handles long lines and -e... /usr/bin/grep 2023-09-26T05:07:03,751 checking for C compiler warning flags... -Wall 2023-09-26T05:07:03,918 checking for gcc options needed to detect all undeclared functions... none needed 2023-09-26T05:07:04,003 checking for stdio.h... yes 2023-09-26T05:07:04,110 checking for stdlib.h... yes 2023-09-26T05:07:04,224 checking for string.h... yes 2023-09-26T05:07:04,346 checking for inttypes.h... yes 2023-09-26T05:07:04,497 checking for stdint.h... yes 2023-09-26T05:07:04,614 checking for strings.h... yes 2023-09-26T05:07:04,736 checking for sys/stat.h... yes 2023-09-26T05:07:04,855 checking for sys/types.h... yes 2023-09-26T05:07:05,232 checking for unistd.h... yes 2023-09-26T05:07:05,424 checking for sys/param.h... yes 2023-09-26T05:07:05,598 checking whether _XOPEN_SOURCE is declared... no 2023-09-26T05:07:05,770 checking C compiler flags needed for ssse3... none 2023-09-26T05:07:05,945 checking C compiler flags needed for popcnt... none 2023-09-26T05:07:06,139 checking C compiler flags needed for sse4.1... none 2023-09-26T05:07:06,317 checking C compiler flags needed for avx2... none 2023-09-26T05:07:06,492 checking C compiler flags needed for avx512f... none 2023-09-26T05:07:06,495 checking for pkg-config... /usr/bin/pkg-config 2023-09-26T05:07:06,500 checking pkg-config is at least version 0.9.0... yes 2023-09-26T05:07:06,502 checking for special C compiler options needed for large files... no 2023-09-26T05:07:06,686 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-09-26T05:07:06,697 checking shared library type for unknown-Linux... plain .so 2023-09-26T05:07:06,877 checking whether the linker supports versioned symbols... yes 2023-09-26T05:07:07,080 checking whether the compiler accepts -fvisibility=hidden... yes 2023-09-26T05:07:07,322 checking build system type... armv7l-unknown-linux-gnueabihf 2023-09-26T05:07:07,323 checking host system type... armv7l-unknown-linux-gnueabihf 2023-09-26T05:07:07,512 checking for getpagesize... yes 2023-09-26T05:07:07,871 checking for working mmap... yes 2023-09-26T05:07:08,060 checking for gmtime_r... yes 2023-09-26T05:07:08,246 checking for fsync... yes 2023-09-26T05:07:08,430 checking for drand48... yes 2023-09-26T05:07:08,693 checking for srand48_deterministic... no 2023-09-26T05:07:08,854 checking whether fdatasync is declared... yes 2023-09-26T05:07:09,039 checking for fdatasync... yes 2023-09-26T05:07:09,460 checking for library containing log... -lm 2023-09-26T05:07:09,599 checking for zlib.h... yes 2023-09-26T05:07:09,781 checking for inflate in -lz... yes 2023-09-26T05:07:09,965 checking for library containing recv... none required 2023-09-26T05:07:10,052 checking for bzlib.h... yes 2023-09-26T05:07:10,233 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-09-26T05:07:10,354 checking whether htscodecs files are present... yes 2023-09-26T05:07:10,356 configure: WARNING: GCS support not enabled: requires libcurl support 2023-09-26T05:07:10,357 configure: WARNING: S3 support not enabled: requires libcurl support 2023-09-26T05:07:10,588 checking for library containing regcomp... none required 2023-09-26T05:07:10,660 configure: creating ./config.status 2023-09-26T05:07:11,007 config.status: creating config.mk 2023-09-26T05:07:11,047 config.status: creating htslib.pc.tmp 2023-09-26T05:07:11,093 config.status: creating config.h 2023-09-26T05:07:11,125 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-09-26T05:07:11,326 [ 17%] Performing build step for 'htslib' 2023-09-26T05:07:15,223 Updating htscodecs/htscodecs/version.h : #define HTSCODECS_VERSION_TEXT "1.5.1" 2023-09-26T05:08:24,010 [ 20%] No install step for 'htslib' 2023-09-26T05:08:24,199 [ 22%] Completed 'htslib' 2023-09-26T05:08:24,381 [ 22%] Built target htslib 2023-09-26T05:08:24,533 [ 25%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-09-26T05:08:36,841 [ 28%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-09-26T05:08:41,440 [ 31%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-09-26T05:08:44,653 [ 34%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-09-26T05:08:49,412 [ 37%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-09-26T05:08:53,056 [ 40%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-09-26T05:08:55,173 [ 42%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-09-26T05:08:56,541 [ 45%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-09-26T05:08:57,526 [ 48%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-09-26T05:08:58,716 [ 51%] Linking CXX shared module /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:09:00,024 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-26T05:09:00,024 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-26T05:09:07,317 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-09-26T05:09:07,320 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GVec.hh:107:24: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-09-26T05:09:07,321 107 | fArray=new OBJ[NewCapacity]; 2023-09-26T05:09:07,322 | ^ 2023-09-26T05:09:07,322 /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-09-26T05:09:07,323 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-09-26T05:09:07,323 | ^ 2023-09-26T05:09:10,661 In member function ‘Push’, 2023-09-26T05:09:10,832 inlined from ‘fgetline’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.cpp:530:11, 2023-09-26T05:09:10,909 inlined from ‘start’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/tmerge.cpp:360:28, 2023-09-26T05:09:10,973 inlined from ‘splam_extract’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_extract.cpp:182:37: 2023-09-26T05:09:11,123 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-26T05:09:11,137 564 | GDynArray_ADD(item); 2023-09-26T05:09:11,187 | ^ 2023-09-26T05:09:11,236 In function ‘GRealloc’, 2023-09-26T05:09:11,271 inlined from ‘Clear’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:633:6, 2023-09-26T05:09:11,272 inlined from ‘growTo’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:577:28, 2023-09-26T05:09:11,273 inlined from ‘Grow’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:544:12, 2023-09-26T05:09:11,274 inlined from ‘Push’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:564:6, 2023-09-26T05:09:11,275 inlined from ‘fgetline’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.cpp:530:11, 2023-09-26T05:09:11,276 inlined from ‘start’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/tmerge.cpp:360:28, 2023-09-26T05:09:11,277 inlined from ‘splam_extract’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_extract.cpp:182:37: 2023-09-26T05:09:11,278 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:280:21: note: at offset -1 into destination object of size 16 allocated by ‘realloc’ 2023-09-26T05:09:11,278 280 | void *p=realloc(*ptr,size); 2023-09-26T05:09:11,279 | ^ 2023-09-26T05:09:11,280 In member function ‘Push’, 2023-09-26T05:09:11,280 inlined from ‘fgetline’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.cpp:530:11, 2023-09-26T05:09:11,281 inlined from ‘start’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/tmerge.cpp:360:28, 2023-09-26T05:09:11,282 inlined from ‘splam_extract’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_extract.cpp:182:37: 2023-09-26T05:09:11,283 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-26T05:09:11,283 564 | GDynArray_ADD(item); 2023-09-26T05:09:11,284 | ^ 2023-09-26T05:09:11,284 In function ‘GRealloc’, 2023-09-26T05:09:11,285 inlined from ‘Clear’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:633:6, 2023-09-26T05:09:11,285 inlined from ‘growTo’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:577:28, 2023-09-26T05:09:11,286 inlined from ‘Grow’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:544:12, 2023-09-26T05:09:11,287 inlined from ‘Push’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:564:6, 2023-09-26T05:09:11,287 inlined from ‘fgetline’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.cpp:530:11, 2023-09-26T05:09:11,289 inlined from ‘start’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/tmerge.cpp:360:28, 2023-09-26T05:09:11,289 inlined from ‘splam_extract’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_extract.cpp:182:37: 2023-09-26T05:09:11,290 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:272:20: note: at offset -1 into destination object of size 16 allocated by ‘malloc’ 2023-09-26T05:09:11,290 272 | void *p=malloc(size); 2023-09-26T05:09:11,291 | ^ 2023-09-26T05:09:22,493 [ 51%] Built target splam_extract 2023-09-26T05:09:22,599 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-09-26T05:09:28,802 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-09-26T05:09:28,803 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,803 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T05:09:28,804 | ^~~~~~~~~~ 2023-09-26T05:09:28,804 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,805 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T05:09:28,806 | ^~~~~~ 2023-09-26T05:09:28,806 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,807 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T05:09:28,807 | ^~~~ 2023-09-26T05:09:28,808 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,808 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T05:09:28,809 | ^~~~ 2023-09-26T05:09:28,809 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,810 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T05:09:28,811 | ^~~~~~~~~~ 2023-09-26T05:09:28,811 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,812 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T05:09:28,813 | ^~~~~~ 2023-09-26T05:09:28,813 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,814 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T05:09:28,814 | ^~~~ 2023-09-26T05:09:28,815 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,815 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T05:09:28,816 | ^~~~ 2023-09-26T05:09:28,817 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,817 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:09:28,818 | ^~~~~~~~~~ 2023-09-26T05:09:28,818 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,819 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:09:28,820 | ^~~~~~~ 2023-09-26T05:09:28,820 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,821 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:09:28,821 | ^~~~ 2023-09-26T05:09:28,822 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,822 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:09:28,823 | ^~~~ 2023-09-26T05:09:28,824 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,824 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:09:28,825 | ^~~~ 2023-09-26T05:09:28,826 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,826 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:09:28,827 | ^~~~~~~~~~ 2023-09-26T05:09:28,828 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,828 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:09:28,829 | ^~~~~~~ 2023-09-26T05:09:28,830 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,830 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:09:28,831 | ^~~~ 2023-09-26T05:09:28,832 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,832 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:09:28,833 | ^~~~ 2023-09-26T05:09:28,833 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:09:28,834 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:09:28,835 | ^~~~ 2023-09-26T05:09:34,821 [ 57%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-09-26T05:09:44,392 [ 60%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-09-26T05:09:44,959 [ 62%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-09-26T05:09:45,544 [ 65%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-09-26T05:09:45,887 [ 68%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-09-26T05:09:48,049 [ 71%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-09-26T05:09:51,313 [ 74%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-09-26T05:09:55,911 [ 77%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-09-26T05:10:02,997 [ 80%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-09-26T05:10:07,904 [ 82%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-09-26T05:10:15,725 [ 85%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-09-26T05:10:19,437 [ 88%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-09-26T05:10:21,549 [ 91%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-09-26T05:10:22,914 [ 94%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-09-26T05:10:23,899 [ 97%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-09-26T05:10:25,133 [100%] Linking CXX shared module /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:10:26,156 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-26T05:10:26,157 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-26T05:10:48,142 [100%] Built target splam_clean 2023-09-26T05:10:48,513 -- The C compiler identification is GNU 12.2.0 2023-09-26T05:10:48,842 -- The CXX compiler identification is GNU 12.2.0 2023-09-26T05:10:48,920 -- Detecting C compiler ABI info 2023-09-26T05:10:49,281 -- Detecting C compiler ABI info - done 2023-09-26T05:10:49,326 -- Check for working C compiler: /usr/bin/cc - skipped 2023-09-26T05:10:49,328 -- Detecting C compile features 2023-09-26T05:10:49,330 -- Detecting C compile features - done 2023-09-26T05:10:49,351 -- Detecting CXX compiler ABI info 2023-09-26T05:10:49,811 -- Detecting CXX compiler ABI info - done 2023-09-26T05:10:49,859 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-09-26T05:10:49,861 -- Detecting CXX compile features 2023-09-26T05:10:49,864 -- Detecting CXX compile features - done 2023-09-26T05:10:49,889 -- pybind11 v2.11.0 dev1 2023-09-26T05:10:49,972 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.6") 2023-09-26T05:10:50,053 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.11.so 2023-09-26T05:10:50,062 -- Performing Test HAS_FLTO 2023-09-26T05:10:53,445 -- Performing Test HAS_FLTO - Success 2023-09-26T05:10:53,494 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 2023-09-26T05:10:53,494 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/htslib 2023-09-26T05:10:53,495 LIBRARY_OUTPUT_DIRECTORY: 2023-09-26T05:10:53,584 EXAMPLE_VERSION_INFO: 1.0.1 2023-09-26T05:10:53,584 -- Configuring done 2023-09-26T05:10:53,675 -- Generating done 2023-09-26T05:10:53,689 -- Build files have been written to: /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/build/temp.linux-armv7l-cpython-311/splam_clean 2023-09-26T05:10:53,930 [ 2%] Creating directories for 'htslib' 2023-09-26T05:10:54,046 [ 5%] No download step for 'htslib' 2023-09-26T05:10:54,158 [ 8%] No update step for 'htslib' 2023-09-26T05:10:54,273 [ 11%] No patch step for 'htslib' 2023-09-26T05:10:54,388 [ 14%] Performing configure step for 'htslib' 2023-09-26T05:11:01,395 checking for gcc... gcc 2023-09-26T05:11:01,734 checking whether the C compiler works... yes 2023-09-26T05:11:01,736 checking for C compiler default output file name... a.out 2023-09-26T05:11:01,915 checking for suffix of executables... 2023-09-26T05:11:02,123 checking whether we are cross compiling... no 2023-09-26T05:11:02,214 checking for suffix of object files... o 2023-09-26T05:11:02,288 checking whether the compiler supports GNU C... yes 2023-09-26T05:11:02,364 checking whether gcc accepts -g... yes 2023-09-26T05:11:02,564 checking for gcc option to enable C11 features... none needed 2023-09-26T05:11:02,568 checking for ranlib... ranlib 2023-09-26T05:11:02,576 checking for grep that handles long lines and -e... /usr/bin/grep 2023-09-26T05:11:03,138 checking for C compiler warning flags... -Wall 2023-09-26T05:11:03,560 checking for gcc options needed to detect all undeclared functions... none needed 2023-09-26T05:11:03,663 checking for stdio.h... yes 2023-09-26T05:11:03,808 checking for stdlib.h... yes 2023-09-26T05:11:03,954 checking for string.h... yes 2023-09-26T05:11:04,089 checking for inttypes.h... yes 2023-09-26T05:11:04,251 checking for stdint.h... yes 2023-09-26T05:11:04,385 checking for strings.h... yes 2023-09-26T05:11:04,514 checking for sys/stat.h... yes 2023-09-26T05:11:04,643 checking for sys/types.h... yes 2023-09-26T05:11:06,180 checking for unistd.h... yes 2023-09-26T05:11:06,339 checking for sys/param.h... yes 2023-09-26T05:11:06,513 checking whether _XOPEN_SOURCE is declared... no 2023-09-26T05:11:06,690 checking C compiler flags needed for ssse3... none 2023-09-26T05:11:06,885 checking C compiler flags needed for popcnt... none 2023-09-26T05:11:07,129 checking C compiler flags needed for sse4.1... none 2023-09-26T05:11:07,305 checking C compiler flags needed for avx2... none 2023-09-26T05:11:07,479 checking C compiler flags needed for avx512f... none 2023-09-26T05:11:07,482 checking for pkg-config... /usr/bin/pkg-config 2023-09-26T05:11:07,487 checking pkg-config is at least version 0.9.0... yes 2023-09-26T05:11:07,490 checking for special C compiler options needed for large files... no 2023-09-26T05:11:07,668 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-09-26T05:11:07,681 checking shared library type for unknown-Linux... plain .so 2023-09-26T05:11:07,863 checking whether the linker supports versioned symbols... yes 2023-09-26T05:11:08,066 checking whether the compiler accepts -fvisibility=hidden... yes 2023-09-26T05:11:08,295 checking build system type... armv7l-unknown-linux-gnueabihf 2023-09-26T05:11:08,297 checking host system type... armv7l-unknown-linux-gnueabihf 2023-09-26T05:11:08,477 checking for getpagesize... yes 2023-09-26T05:11:08,862 checking for working mmap... yes 2023-09-26T05:11:09,069 checking for gmtime_r... yes 2023-09-26T05:11:09,252 checking for fsync... yes 2023-09-26T05:11:09,434 checking for drand48... yes 2023-09-26T05:11:09,658 checking for srand48_deterministic... no 2023-09-26T05:11:09,821 checking whether fdatasync is declared... yes 2023-09-26T05:11:10,006 checking for fdatasync... yes 2023-09-26T05:11:10,424 checking for library containing log... -lm 2023-09-26T05:11:10,565 checking for zlib.h... yes 2023-09-26T05:11:10,747 checking for inflate in -lz... yes 2023-09-26T05:11:10,929 checking for library containing recv... none required 2023-09-26T05:11:11,016 checking for bzlib.h... yes 2023-09-26T05:11:11,198 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-09-26T05:11:11,295 checking whether htscodecs files are present... yes 2023-09-26T05:11:11,297 configure: WARNING: GCS support not enabled: requires libcurl support 2023-09-26T05:11:11,298 configure: WARNING: S3 support not enabled: requires libcurl support 2023-09-26T05:11:11,481 checking for library containing regcomp... none required 2023-09-26T05:11:11,548 configure: creating ./config.status 2023-09-26T05:11:11,838 config.status: creating config.mk 2023-09-26T05:11:11,877 config.status: creating htslib.pc.tmp 2023-09-26T05:11:11,921 config.status: creating config.h 2023-09-26T05:11:11,939 config.status: config.h is unchanged 2023-09-26T05:11:11,945 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-09-26T05:11:12,147 [ 17%] Performing build step for 'htslib' 2023-09-26T05:11:12,533 [ 20%] No install step for 'htslib' 2023-09-26T05:11:12,653 [ 22%] Completed 'htslib' 2023-09-26T05:11:12,810 [ 22%] Built target htslib 2023-09-26T05:11:12,941 [ 25%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-09-26T05:11:25,052 [ 28%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-09-26T05:11:29,643 [ 31%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-09-26T05:11:33,086 [ 34%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-09-26T05:11:37,828 [ 37%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-09-26T05:11:41,475 [ 40%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-09-26T05:11:43,549 [ 42%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-09-26T05:11:44,929 [ 45%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-09-26T05:11:45,911 [ 48%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-09-26T05:11:47,146 [ 51%] Linking CXX shared module /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:11:48,451 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-26T05:11:48,452 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-26T05:11:55,650 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-09-26T05:11:56,018 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GVec.hh:107:24: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-09-26T05:11:56,018 107 | fArray=new OBJ[NewCapacity]; 2023-09-26T05:11:56,019 | ^ 2023-09-26T05:11:56,020 /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-09-26T05:11:56,020 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-09-26T05:11:56,021 | ^ 2023-09-26T05:11:59,389 In member function ‘Push’, 2023-09-26T05:11:59,389 inlined from ‘fgetline’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.cpp:530:11, 2023-09-26T05:11:59,390 inlined from ‘start’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/tmerge.cpp:360:28, 2023-09-26T05:11:59,391 inlined from ‘splam_extract’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_extract.cpp:182:37: 2023-09-26T05:11:59,391 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-26T05:11:59,392 564 | GDynArray_ADD(item); 2023-09-26T05:11:59,393 | ^ 2023-09-26T05:11:59,394 In function ‘GRealloc’, 2023-09-26T05:11:59,395 inlined from ‘Clear’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:633:6, 2023-09-26T05:11:59,395 inlined from ‘growTo’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:577:28, 2023-09-26T05:11:59,396 inlined from ‘Grow’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:544:12, 2023-09-26T05:11:59,397 inlined from ‘Push’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:564:6, 2023-09-26T05:11:59,397 inlined from ‘fgetline’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.cpp:530:11, 2023-09-26T05:11:59,398 inlined from ‘start’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/tmerge.cpp:360:28, 2023-09-26T05:11:59,398 inlined from ‘splam_extract’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_extract.cpp:182:37: 2023-09-26T05:11:59,399 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:280:21: note: at offset -1 into destination object of size 16 allocated by ‘realloc’ 2023-09-26T05:11:59,400 280 | void *p=realloc(*ptr,size); 2023-09-26T05:11:59,400 | ^ 2023-09-26T05:11:59,401 In member function ‘Push’, 2023-09-26T05:11:59,402 inlined from ‘fgetline’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.cpp:530:11, 2023-09-26T05:11:59,402 inlined from ‘start’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/tmerge.cpp:360:28, 2023-09-26T05:11:59,402 inlined from ‘splam_extract’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_extract.cpp:182:37: 2023-09-26T05:11:59,403 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-26T05:11:59,403 564 | GDynArray_ADD(item); 2023-09-26T05:11:59,404 | ^ 2023-09-26T05:11:59,404 In function ‘GRealloc’, 2023-09-26T05:11:59,405 inlined from ‘Clear’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:633:6, 2023-09-26T05:11:59,405 inlined from ‘growTo’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:577:28, 2023-09-26T05:11:59,419 inlined from ‘Grow’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:544:12, 2023-09-26T05:11:59,423 inlined from ‘Push’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:564:6, 2023-09-26T05:11:59,428 inlined from ‘fgetline’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.cpp:530:11, 2023-09-26T05:11:59,880 inlined from ‘start’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/tmerge.cpp:360:28, 2023-09-26T05:11:59,933 inlined from ‘splam_extract’ at /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_extract.cpp:182:37: 2023-09-26T05:11:59,948 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/include/gclib/GBase.h:272:20: note: at offset -1 into destination object of size 16 allocated by ‘malloc’ 2023-09-26T05:12:00,060 272 | void *p=malloc(size); 2023-09-26T05:12:00,061 | ^ 2023-09-26T05:12:11,503 [ 51%] Built target splam_extract 2023-09-26T05:12:11,606 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-09-26T05:12:17,764 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-09-26T05:12:17,764 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,765 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T05:12:17,766 | ^~~~~~~~~~ 2023-09-26T05:12:17,767 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,767 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T05:12:17,768 | ^~~~~~ 2023-09-26T05:12:17,769 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,769 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T05:12:17,770 | ^~~~ 2023-09-26T05:12:17,771 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,772 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T05:12:17,772 | ^~~~ 2023-09-26T05:12:17,773 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,773 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T05:12:17,774 | ^~~~~~~~~~ 2023-09-26T05:12:17,774 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,775 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T05:12:17,775 | ^~~~~~ 2023-09-26T05:12:17,776 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,777 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T05:12:17,777 | ^~~~ 2023-09-26T05:12:17,778 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,779 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T05:12:17,780 | ^~~~ 2023-09-26T05:12:17,780 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,781 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:12:17,782 | ^~~~~~~~~~ 2023-09-26T05:12:17,782 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,783 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:12:17,783 | ^~~~~~~ 2023-09-26T05:12:17,784 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,785 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:12:17,786 | ^~~~ 2023-09-26T05:12:17,787 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,787 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:12:17,788 | ^~~~ 2023-09-26T05:12:17,788 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,789 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:12:17,789 | ^~~~ 2023-09-26T05:12:17,790 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,790 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:12:17,791 | ^~~~~~~~~~ 2023-09-26T05:12:17,792 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,792 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:12:17,793 | ^~~~~~~ 2023-09-26T05:12:17,793 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,794 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:12:17,795 | ^~~~ 2023-09-26T05:12:17,795 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,796 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:12:17,797 | ^~~~ 2023-09-26T05:12:17,797 /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:12:17,798 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:12:17,799 | ^~~~ 2023-09-26T05:12:23,784 [ 57%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-09-26T05:12:33,429 [ 60%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-09-26T05:12:33,992 [ 62%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-09-26T05:12:34,573 [ 65%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-09-26T05:12:34,906 [ 68%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-09-26T05:12:37,035 [ 71%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-09-26T05:12:40,506 [ 74%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-09-26T05:12:45,117 [ 77%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-09-26T05:12:50,475 [ 80%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-09-26T05:12:55,280 [ 82%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-09-26T05:13:00,020 [ 85%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-09-26T05:13:03,657 [ 88%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-09-26T05:13:05,741 [ 91%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-09-26T05:13:07,107 [ 94%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-09-26T05:13:08,086 [ 97%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-09-26T05:13:09,270 [100%] Linking CXX shared module /tmp/pip-wheel-3a3ldqxi/splam_82fa084b91384b0495157dbb45f1a3f6/build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:13:10,244 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-26T05:13:10,244 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-26T05:13:31,573 [100%] Built target splam_clean 2023-09-26T05:13:31,664 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-26T05:13:31,665 !! 2023-09-26T05:13:31,666 ******************************************************************************** 2023-09-26T05:13:31,666 Please avoid running ``setup.py`` directly. 2023-09-26T05:13:31,667 Instead, use pypa/build, pypa/installer or other 2023-09-26T05:13:31,668 standards-based tools. 2023-09-26T05:13:31,669 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-26T05:13:31,669 ******************************************************************************** 2023-09-26T05:13:31,670 !! 2023-09-26T05:13:31,671 self.initialize_options() 2023-09-26T05:13:31,691 installing to build/bdist.linux-armv7l/wheel 2023-09-26T05:13:31,692 running install 2023-09-26T05:13:31,717 running install_lib 2023-09-26T05:13:31,740 creating build/bdist.linux-armv7l 2023-09-26T05:13:31,741 creating build/bdist.linux-armv7l/wheel 2023-09-26T05:13:31,743 creating build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:13:31,744 copying build/lib.linux-armv7l-cpython-311/splam/clean_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:13:31,746 copying build/lib.linux-armv7l-cpython-311/splam/parse.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:13:31,749 copying build/lib.linux-armv7l-cpython-311/splam/main.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:13:31,751 copying build/lib.linux-armv7l-cpython-311/splam/__init__.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:13:31,753 copying build/lib.linux-armv7l-cpython-311/splam/prediction.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:13:31,755 copying build/lib.linux-armv7l-cpython-311/splam/SPLAM.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:13:31,757 copying build/lib.linux-armv7l-cpython-311/splam/header.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:13:31,759 copying build/lib.linux-armv7l-cpython-311/splam/extract_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:13:31,761 copying build/lib.linux-armv7l-cpython-311/splam/helper.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:13:31,763 copying build/lib.linux-armv7l-cpython-311/splam/chr_size.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:13:31,766 copying build/lib.linux-armv7l-cpython-311/splam/config.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:13:31,767 copying build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-09-26T05:13:31,795 copying build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-09-26T05:13:31,825 running install_egg_info 2023-09-26T05:13:31,885 running egg_info 2023-09-26T05:13:31,910 writing splam.egg-info/PKG-INFO 2023-09-26T05:13:31,914 writing dependency_links to splam.egg-info/dependency_links.txt 2023-09-26T05:13:31,915 writing entry points to splam.egg-info/entry_points.txt 2023-09-26T05:13:31,917 writing requirements to splam.egg-info/requires.txt 2023-09-26T05:13:31,918 writing top-level names to splam.egg-info/top_level.txt 2023-09-26T05:13:31,946 reading manifest file 'splam.egg-info/SOURCES.txt' 2023-09-26T05:13:32,113 reading manifest template 'MANIFEST.in' 2023-09-26T05:13:32,367 adding license file 'LICENSE' 2023-09-26T05:13:32,424 writing manifest file 'splam.egg-info/SOURCES.txt' 2023-09-26T05:13:32,427 Copying splam.egg-info to build/bdist.linux-armv7l/wheel/splam-1.0.1-py3.11.egg-info 2023-09-26T05:13:32,438 running install_scripts 2023-09-26T05:13:32,491 creating build/bdist.linux-armv7l/wheel/splam-1.0.1.dist-info/WHEEL 2023-09-26T05:13:32,493 creating '/tmp/pip-wheel-1frfm4a4/splam-1.0.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-26T05:13:32,775 adding 'splam_clean.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T05:13:33,039 adding 'splam_extract.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T05:13:33,050 adding 'splam/SPLAM.py' 2023-09-26T05:13:33,051 adding 'splam/__init__.py' 2023-09-26T05:13:33,057 adding 'splam/chr_size.py' 2023-09-26T05:13:33,059 adding 'splam/clean_gff.py' 2023-09-26T05:13:33,060 adding 'splam/config.py' 2023-09-26T05:13:33,061 adding 'splam/extract_gff.py' 2023-09-26T05:13:33,063 adding 'splam/header.py' 2023-09-26T05:13:33,064 adding 'splam/helper.py' 2023-09-26T05:13:33,066 adding 'splam/main.py' 2023-09-26T05:13:33,067 adding 'splam/parse.py' 2023-09-26T05:13:33,069 adding 'splam/prediction.py' 2023-09-26T05:13:33,071 adding 'splam-1.0.1.dist-info/LICENSE' 2023-09-26T05:13:33,072 adding 'splam-1.0.1.dist-info/METADATA' 2023-09-26T05:13:33,073 adding 'splam-1.0.1.dist-info/WHEEL' 2023-09-26T05:13:33,074 adding 'splam-1.0.1.dist-info/entry_points.txt' 2023-09-26T05:13:33,075 adding 'splam-1.0.1.dist-info/top_level.txt' 2023-09-26T05:13:33,076 adding 'splam-1.0.1.dist-info/RECORD' 2023-09-26T05:13:33,089 removing build/bdist.linux-armv7l/wheel 2023-09-26T05:13:33,208 Building wheel for splam (setup.py): finished with status 'done' 2023-09-26T05:13:33,222 Created wheel for splam: filename=splam-1.0.1-cp311-cp311-linux_armv7l.whl size=920901 sha256=3eae037b5ef017f9e77bed8f4fe7c1a3ff0ff85eb9f7f8fb06204896db35df86 2023-09-26T05:13:33,223 Stored in directory: /tmp/pip-ephem-wheel-cache-fehhr8h8/wheels/2d/f0/3d/48dd3b7ebdadaf1892fd1bc0b0bbe90fa493df574bc7f16636 2023-09-26T05:13:33,233 Successfully built splam 2023-09-26T05:13:33,269 Removed build tracker: '/tmp/pip-build-tracker-x1dwuz1_'