2023-09-26T05:22:44,833 Created temporary directory: /tmp/pip-build-tracker-z1poyoe9 2023-09-26T05:22:44,834 Initialized build tracking at /tmp/pip-build-tracker-z1poyoe9 2023-09-26T05:22:44,835 Created build tracker: /tmp/pip-build-tracker-z1poyoe9 2023-09-26T05:22:44,835 Entered build tracker: /tmp/pip-build-tracker-z1poyoe9 2023-09-26T05:22:44,836 Created temporary directory: /tmp/pip-wheel-ur6fwidg 2023-09-26T05:22:44,839 Created temporary directory: /tmp/pip-ephem-wheel-cache-9ok4vf24 2023-09-26T05:22:44,860 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-26T05:22:44,864 2 location(s) to search for versions of splam: 2023-09-26T05:22:44,864 * https://pypi.org/simple/splam/ 2023-09-26T05:22:44,864 * https://www.piwheels.org/simple/splam/ 2023-09-26T05:22:44,865 Fetching project page and analyzing links: https://pypi.org/simple/splam/ 2023-09-26T05:22:44,865 Getting page https://pypi.org/simple/splam/ 2023-09-26T05:22:44,867 Found index url https://pypi.org/simple/ 2023-09-26T05:22:45,081 Fetched page https://pypi.org/simple/splam/ as application/vnd.pypi.simple.v1+json 2023-09-26T05:22:45,090 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/57/2a/d68f86c46b3152c9072975cb1c8b3f2345e0f71cea763c0635ca8c5e0261/splam-0.2.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,091 Found link https://files.pythonhosted.org/packages/ba/e8/4cf0f802bf26fd6587829e3688109caef6d26e13d19ce003ac876212da15/splam-0.2.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.9 2023-09-26T05:22:45,092 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f0/97/c31f00ac8a786213c4a50dd993cd04e61af08766e9559f244fb9c3929178/splam-0.2.10-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,093 Found link https://files.pythonhosted.org/packages/72/d1/671663c98d0cfca3218b880633390493fcebf9972175a7c4d2752259f2ea/splam-0.2.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.10 2023-09-26T05:22:45,094 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/ad/36/84239a43f206dfbfe07c6e6f76ef8c54235439210640aeacc8cb20e24c2e/splam-0.2.11-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,095 Found link https://files.pythonhosted.org/packages/c7/b3/96a175c203358d735694d7d5fd9261ef8683af968e14e473e823d159cee1/splam-0.2.11.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.11 2023-09-26T05:22:45,096 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/a5/f5/e15307ccb65ec9c225b7f1af65ee2c8880ba8eb049d386f4c9da459b2e1e/splam-0.2.12-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,097 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ba/88/6cac004352d4aa92aabdfd31f9b96919f8044db486185d3fd3c924583bc8/splam-0.2.12-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,098 Found link https://files.pythonhosted.org/packages/32/fa/a9795e9df88e8ea6c6788ae171702d5f9d8ce2c3472408ab0784f08a7b91/splam-0.2.12.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.12 2023-09-26T05:22:45,098 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/59/88/fefee12f8e44d6879a0970d37b42fc4dc54010f78b1ee91f6db366c1f125/splam-0.2.13-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,099 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/64/13/d601e5e99b31891d95bc0a6201367dab38f12faaadcb6aedbee7725dca71/splam-0.2.13-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,100 Found link https://files.pythonhosted.org/packages/cf/fb/2e5425fcdb2e5fd7ff963b174b1582816154fd0373bbc96edf4e851d272d/splam-0.2.13.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.13 2023-09-26T05:22:45,101 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/da/65/a129eabb1d673da72f1d7dfd3495c01c89da78569b7f2dba2c746a0c0f29/splam-0.2.14-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,101 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/79/2fdaa68664126c8c71bac526b41e1e35e4195879170c8129a8d482f3ae7b/splam-0.2.14-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,102 Found link https://files.pythonhosted.org/packages/9b/3f/d7dd2411528494ed5062665c3b5d5d7d8422fd11fa181d5fc01ea67d7dbf/splam-0.2.14.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.14 2023-09-26T05:22:45,103 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f4/9a/e7d1f5f16d77888ac5d0935e180fa2210e875ff487909519d6871e1301da/splam-0.2.15-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,103 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/40/b6/eda61824794c736e52c09353dfbbd70eea4d0f0ab31896f3688d269ab64b/splam-0.2.15-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,104 Found link https://files.pythonhosted.org/packages/29/d0/5e9ef93e49636308cb56b70a06c8932321cb60a4aae678d8bb1d213b52b5/splam-0.2.15.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.15 2023-09-26T05:22:45,104 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e5/17/caa4b05a6370f2d197ec174fe1968f63acc357db5923efca0860b3a5e141/splam-0.2.16-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,105 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fe/a5/d90a02293e34acf5515a8f435ae90afeb823336d6232a7bedf01436a00f9/splam-0.2.17-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,105 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ef/af/7db5183d8c36a250bb4547c58610624b4d1067ea0eb119addc8986ce6ec1/splam-0.2.17-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,106 Found link https://files.pythonhosted.org/packages/26/3a/0e89dd56f9617853061d7c4ed6a220a414a01bba9f0005e54da52a1ad22e/splam-0.2.17.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.17 2023-09-26T05:22:45,107 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/bd/50/ae02dcd9e7c53df59acc9ad83ac389a886e55254cd6953614d43f0eaac60/splam-0.3.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,108 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/78/0b/8b0b45b16922007f88c9b81357cde8b84f9ea45327104b00724024e722ec/splam-0.3.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,109 Found link https://files.pythonhosted.org/packages/e5/c7/4bf13e849aefc7cfdd94f142e6267e4937c61d7fb9fbfe1119953f6a5e72/splam-0.3.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.3.0 2023-09-26T05:22:45,109 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/55/d8079e937d1f568ac9358237871b9d4d6d28abf1e8e8ec2b8073db7b166a/splam-0.3.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,110 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6d/9f/5e7c396bd04da9866f89f51574bd3fec1e691b279116e4d4de92b75b6538/splam-1.0.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,111 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/56/ae/c9e443ec09db88b2b2aaa18ebc6b12751b321d731ce21964ee188067bb0f/splam-1.0.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,112 Found link https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.0 2023-09-26T05:22:45,112 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/43/45/27c64605655d3127bf6155bc060f98fb565e631553e4f0e0a53d3922ebf3/splam-1.0.1-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,113 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/4d/0b5427df4d5d74ba5a98e28805b45fee4b15d2cad1e9aa91069306c29da7/splam-1.0.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,113 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/da/e1/11ee65eb50a2f628f92249d84cd72eddbc1386afbc82c7410fceb627d995/splam-1.0.1-py3.9-linux-x86_64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,114 Found link https://files.pythonhosted.org/packages/ad/3c/5a2fcc44ca9afa6bc1cb4fe6a30ba6495f9c1359c6b610536cb6c7998ca1/splam-1.0.1.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.1 2023-09-26T05:22:45,114 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6a/e7/e7827b0d637f018ef8d18ea969985ce37ffa520fd1bf6d0e8d43d72b749e/splam-1.0.2-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,115 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f2/ba/94da0985b6db88ba663b4e56a395d74d04283a79d0fdf476763251f5679f/splam-1.0.2-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,116 Found link https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.2 2023-09-26T05:22:45,117 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/30/c9/23c10c8ee217996cc58e6f16ffc732657d1cb3011f7cbc41ebb51927bbbb/splam-1.0.3-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,118 Found link https://files.pythonhosted.org/packages/b3/80/1ff08f5e516c2ce233a75e61e8ce3dacc34b00bd2cae4fae0d01b0d758e9/splam-1.0.3.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.3 2023-09-26T05:22:45,119 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/70/bd/3aacba5a589a5a8d4688781f1376a822b1df05526355738a85f10a6f0c86/splam-1.0.4-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,119 Found link https://files.pythonhosted.org/packages/b3/ef/1c49f24a396880a7ac6773041c067d1418ca533df5018de37f1fb49f512a/splam-1.0.4.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.4 2023-09-26T05:22:45,120 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/54/7e/ce14252ed5cbc26ad69ffe8ec6909d91f2bed9f97749fb5ba0f43a935479/splam-1.0.5-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,121 Found link https://files.pythonhosted.org/packages/5f/dd/ac054961585d4e5d71c889e8840dc096a847ac38b04295f38dbe524718e5/splam-1.0.5.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.5 2023-09-26T05:22:45,122 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f7/1e/02d35d67ba3f32f629f40824705e8ef82b6a80914fef3ffa59bcea67c965/splam-1.0.6-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,123 Found link https://files.pythonhosted.org/packages/b2/7d/e8f8b51f071b0bc4e2a1a0cc31db50c9acecb68271cd5bd5e113c7442fed/splam-1.0.6.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.6 2023-09-26T05:22:45,123 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/1d/57/3fbf056633d3332ab938f761553161346599e27c5f5c66f605c08b4fb2b3/splam-1.0.7-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,124 Found link https://files.pythonhosted.org/packages/a5/b6/ffa6c7c753ce7d9989d0e3adcb5310ecf29429dce73ffe51f2b63434c9fc/splam-1.0.7.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.7 2023-09-26T05:22:45,125 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/35/fa/76bf21536e4f60a1caae0132889ab74457d9c75a9476c3d0ec7b578870af/splam-1.0.8-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,125 Found link https://files.pythonhosted.org/packages/a5/ad/6d3495d79895726b6df06f3cd667006e5316fa3235e6919b841057f6e666/splam-1.0.8.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.8 2023-09-26T05:22:45,126 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fc/24/c13538db2c354993494537d33e4138e39d65e83f947f55d6f9d599e12a63/splam-1.0.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,127 Found link https://files.pythonhosted.org/packages/4d/2c/303bafdffb18df8357ea5c7f2bc00f9e4afd9667b9f10b411091c3adc293/splam-1.0.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.9 2023-09-26T05:22:45,128 Fetching project page and analyzing links: https://www.piwheels.org/simple/splam/ 2023-09-26T05:22:45,129 Getting page https://www.piwheels.org/simple/splam/ 2023-09-26T05:22:45,130 Found index url https://www.piwheels.org/simple/ 2023-09-26T05:22:45,296 Fetched page https://www.piwheels.org/simple/splam/ as text/html 2023-09-26T05:22:45,309 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=7453657a38dcf0d7c2daaf93faf6a2938e28d036a3910105918ccff02dc54ca0 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,310 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=7453657a38dcf0d7c2daaf93faf6a2938e28d036a3910105918ccff02dc54ca0 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,311 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=c708c1c8ebbbb979a2a34a938458ac9a9555c23555f3385e0dd5b014a62f7c27 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,311 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=c708c1c8ebbbb979a2a34a938458ac9a9555c23555f3385e0dd5b014a62f7c27 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,312 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=dfd90ff647e7d082d2fc0c7fb31267ff57904b1f695afa56a45f1edfbe66dd36 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,312 Skipping link: No binaries permitted for splam: 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https://www.piwheels.org/simple/splam/splam-0.3.0-cp39-cp39-linux_armv7l.whl#sha256=c3a1b0ed2154e6f57b99c5dc2f09741faf5870038b8f86b488481cbc1cea6038 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,321 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp39-cp39-linux_armv6l.whl#sha256=c3a1b0ed2154e6f57b99c5dc2f09741faf5870038b8f86b488481cbc1cea6038 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,322 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp37-cp37m-linux_armv7l.whl#sha256=e995d4cf8f5f1d21c7acb05a431d0a13318d1dfb4fff327949db624e7b3d4406 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,322 Skipping link: No binaries permitted for splam: 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https://www.piwheels.org/simple/splam/splam-0.2.15-cp37-cp37m-linux_armv7l.whl#sha256=0a4fa9a067616033f881d9c22e1276e29cc4428f1241db0d262c13609379e2cf (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,324 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp37-cp37m-linux_armv6l.whl#sha256=0a4fa9a067616033f881d9c22e1276e29cc4428f1241db0d262c13609379e2cf (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,325 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv7l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,326 Skipping link: No binaries permitted for splam: 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https://www.piwheels.org/simple/splam/splam-0.2.13-cp311-cp311-linux_armv7l.whl#sha256=3358137f046748462107e305dd9d042c880d1ac8e4b165f0ba3872db24bc2175 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,328 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp311-cp311-linux_armv6l.whl#sha256=3358137f046748462107e305dd9d042c880d1ac8e4b165f0ba3872db24bc2175 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,329 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv7l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,329 Skipping link: No binaries permitted for splam: 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https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv7l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,331 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv6l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,332 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv7l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,332 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv6l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,333 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv7l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,333 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv6l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,334 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv7l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,335 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv6l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-26T05:22:45,335 Skipping link: not a file: https://www.piwheels.org/simple/splam/ 2023-09-26T05:22:45,336 Skipping link: not a file: https://pypi.org/simple/splam/ 2023-09-26T05:22:45,356 Given no hashes to check 1 links for project 'splam': discarding no candidates 2023-09-26T05:22:45,374 Collecting splam==1.0.2 2023-09-26T05:22:45,376 Created temporary directory: /tmp/pip-unpack-p9k8k_vk 2023-09-26T05:22:45,628 Downloading splam-1.0.2.tar.gz (40.6 MB) 2023-09-26T05:22:56,250 Added splam==1.0.2 from https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-z1poyoe9' 2023-09-26T05:22:56,253 Running setup.py (path:/tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/setup.py) egg_info for package splam 2023-09-26T05:22:56,253 Created temporary directory: /tmp/pip-pip-egg-info-fricj5uv 2023-09-26T05:22:56,254 Preparing metadata (setup.py): started 2023-09-26T05:22:56,255 Running command python setup.py egg_info 2023-09-26T05:22:57,295 running egg_info 2023-09-26T05:22:57,296 creating /tmp/pip-pip-egg-info-fricj5uv/splam.egg-info 2023-09-26T05:22:57,320 writing /tmp/pip-pip-egg-info-fricj5uv/splam.egg-info/PKG-INFO 2023-09-26T05:22:57,324 writing dependency_links to /tmp/pip-pip-egg-info-fricj5uv/splam.egg-info/dependency_links.txt 2023-09-26T05:22:57,325 writing entry points to /tmp/pip-pip-egg-info-fricj5uv/splam.egg-info/entry_points.txt 2023-09-26T05:22:57,327 writing requirements to /tmp/pip-pip-egg-info-fricj5uv/splam.egg-info/requires.txt 2023-09-26T05:22:57,328 writing top-level names to /tmp/pip-pip-egg-info-fricj5uv/splam.egg-info/top_level.txt 2023-09-26T05:22:57,330 writing manifest file '/tmp/pip-pip-egg-info-fricj5uv/splam.egg-info/SOURCES.txt' 2023-09-26T05:22:57,408 reading manifest file '/tmp/pip-pip-egg-info-fricj5uv/splam.egg-info/SOURCES.txt' 2023-09-26T05:22:57,410 reading manifest template 'MANIFEST.in' 2023-09-26T05:22:57,628 adding license file 'LICENSE' 2023-09-26T05:22:57,667 writing manifest file '/tmp/pip-pip-egg-info-fricj5uv/splam.egg-info/SOURCES.txt' 2023-09-26T05:22:57,779 Preparing metadata (setup.py): finished with status 'done' 2023-09-26T05:22:57,782 Source in /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e has version 1.0.2, which satisfies requirement splam==1.0.2 from https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz 2023-09-26T05:22:57,783 Removed splam==1.0.2 from https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-z1poyoe9' 2023-09-26T05:22:57,788 Created temporary directory: /tmp/pip-unpack-i66sa9n9 2023-09-26T05:22:57,789 Created temporary directory: /tmp/pip-unpack-21wiga5g 2023-09-26T05:22:57,799 Building wheels for collected packages: splam 2023-09-26T05:22:57,803 Created temporary directory: /tmp/pip-wheel-n2shg6ng 2023-09-26T05:22:57,804 Building wheel for splam (setup.py): started 2023-09-26T05:22:57,805 Destination directory: /tmp/pip-wheel-n2shg6ng 2023-09-26T05:22:57,805 Running command python setup.py bdist_wheel 2023-09-26T05:22:58,769 running bdist_wheel 2023-09-26T05:22:58,839 running build 2023-09-26T05:22:58,840 running build_py 2023-09-26T05:22:58,866 creating build 2023-09-26T05:22:58,867 creating build/lib.linux-armv7l-cpython-311 2023-09-26T05:22:58,867 creating build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:22:58,869 copying splam/main.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:22:58,871 copying splam/prediction.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:22:58,873 copying splam/__init__.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:22:58,875 copying splam/header.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:22:58,877 copying splam/clean_gff.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:22:58,879 copying splam/SPLAM.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:22:58,881 copying splam/chr_size.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:22:58,884 copying splam/config.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:22:58,886 copying splam/parse.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:22:58,888 copying splam/extract_gff.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-26T05:22:58,890 running build_ext 2023-09-26T05:22:59,214 -- The C compiler identification is GNU 12.2.0 2023-09-26T05:22:59,529 -- The CXX compiler identification is GNU 12.2.0 2023-09-26T05:22:59,581 -- Detecting C compiler ABI info 2023-09-26T05:23:00,005 -- Detecting C compiler ABI info - done 2023-09-26T05:23:00,056 -- Check for working C compiler: /usr/bin/cc - skipped 2023-09-26T05:23:00,057 -- Detecting C compile features 2023-09-26T05:23:00,060 -- Detecting C compile features - done 2023-09-26T05:23:00,080 -- Detecting CXX compiler ABI info 2023-09-26T05:23:00,502 -- Detecting CXX compiler ABI info - done 2023-09-26T05:23:00,550 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-09-26T05:23:00,551 -- Detecting CXX compile features 2023-09-26T05:23:00,554 -- Detecting CXX compile features - done 2023-09-26T05:23:00,580 -- pybind11 v2.11.0 dev1 2023-09-26T05:23:00,657 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.6") 2023-09-26T05:23:00,767 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.11.so 2023-09-26T05:23:00,779 -- Performing Test HAS_FLTO 2023-09-26T05:23:01,378 -- Performing Test HAS_FLTO - Success 2023-09-26T05:23:01,431 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 2023-09-26T05:23:01,432 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/htslib 2023-09-26T05:23:01,432 LIBRARY_OUTPUT_DIRECTORY: 2023-09-26T05:23:01,515 EXAMPLE_VERSION_INFO: 1.0.2 2023-09-26T05:23:01,516 -- Configuring done 2023-09-26T05:23:01,602 -- Generating done 2023-09-26T05:23:01,614 -- Build files have been written to: /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/build/temp.linux-armv7l-cpython-311/splam_extract 2023-09-26T05:23:01,857 [ 2%] Creating directories for 'htslib' 2023-09-26T05:23:01,973 [ 5%] No download step for 'htslib' 2023-09-26T05:23:02,089 [ 8%] No update step for 'htslib' 2023-09-26T05:23:02,208 [ 11%] No patch step for 'htslib' 2023-09-26T05:23:02,354 [ 14%] Performing configure step for 'htslib' 2023-09-26T05:23:08,512 checking for gcc... gcc 2023-09-26T05:23:08,785 checking whether the C compiler works... yes 2023-09-26T05:23:08,786 checking for C compiler default output file name... a.out 2023-09-26T05:23:09,002 checking for suffix of executables... 2023-09-26T05:23:09,191 checking whether we are cross compiling... no 2023-09-26T05:23:09,273 checking for suffix of object files... o 2023-09-26T05:23:09,345 checking whether the compiler supports GNU C... yes 2023-09-26T05:23:09,418 checking whether gcc accepts -g... yes 2023-09-26T05:23:09,578 checking for gcc option to enable C11 features... none needed 2023-09-26T05:23:09,581 checking for ranlib... ranlib 2023-09-26T05:23:09,589 checking for grep that handles long lines and -e... /usr/bin/grep 2023-09-26T05:23:09,663 checking for C compiler warning flags... -Wall 2023-09-26T05:23:09,859 checking for gcc options needed to detect all undeclared functions... none needed 2023-09-26T05:23:09,944 checking for stdio.h... yes 2023-09-26T05:23:10,052 checking for stdlib.h... yes 2023-09-26T05:23:10,166 checking for string.h... yes 2023-09-26T05:23:10,284 checking for inttypes.h... yes 2023-09-26T05:23:10,402 checking for stdint.h... yes 2023-09-26T05:23:10,519 checking for strings.h... yes 2023-09-26T05:23:10,639 checking for sys/stat.h... yes 2023-09-26T05:23:10,760 checking for sys/types.h... yes 2023-09-26T05:23:10,891 checking for unistd.h... yes 2023-09-26T05:23:11,044 checking for sys/param.h... yes 2023-09-26T05:23:11,214 checking whether _XOPEN_SOURCE is declared... no 2023-09-26T05:23:11,418 checking C compiler flags needed for ssse3... none 2023-09-26T05:23:11,588 checking C compiler flags needed for popcnt... none 2023-09-26T05:23:11,759 checking C compiler flags needed for sse4.1... none 2023-09-26T05:23:11,930 checking C compiler flags needed for avx2... none 2023-09-26T05:23:12,103 checking C compiler flags needed for avx512f... none 2023-09-26T05:23:12,106 checking for pkg-config... /usr/bin/pkg-config 2023-09-26T05:23:12,111 checking pkg-config is at least version 0.9.0... yes 2023-09-26T05:23:12,114 checking for special C compiler options needed for large files... no 2023-09-26T05:23:12,289 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-09-26T05:23:12,300 checking shared library type for unknown-Linux... plain .so 2023-09-26T05:23:12,473 checking whether the linker supports versioned symbols... yes 2023-09-26T05:23:12,645 checking whether the compiler accepts -fvisibility=hidden... yes 2023-09-26T05:23:12,928 checking build system type... armv7l-unknown-linux-gnueabihf 2023-09-26T05:23:12,929 checking host system type... armv7l-unknown-linux-gnueabihf 2023-09-26T05:23:13,117 checking for getpagesize... yes 2023-09-26T05:23:13,458 checking for working mmap... yes 2023-09-26T05:23:13,644 checking for gmtime_r... yes 2023-09-26T05:23:13,856 checking for fsync... yes 2023-09-26T05:23:14,039 checking for drand48... yes 2023-09-26T05:23:14,240 checking for srand48_deterministic... no 2023-09-26T05:23:14,397 checking whether fdatasync is declared... yes 2023-09-26T05:23:14,607 checking for fdatasync... yes 2023-09-26T05:23:14,999 checking for library containing log... -lm 2023-09-26T05:23:15,099 checking for zlib.h... yes 2023-09-26T05:23:15,285 checking for inflate in -lz... yes 2023-09-26T05:23:15,499 checking for library containing recv... none required 2023-09-26T05:23:15,585 checking for bzlib.h... yes 2023-09-26T05:23:15,765 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-09-26T05:23:15,860 checking whether htscodecs files are present... yes 2023-09-26T05:23:15,861 configure: WARNING: GCS support not enabled: requires libcurl support 2023-09-26T05:23:15,870 configure: WARNING: S3 support not enabled: requires libcurl support 2023-09-26T05:23:16,053 checking for library containing regcomp... none required 2023-09-26T05:23:16,125 configure: creating ./config.status 2023-09-26T05:23:16,427 config.status: creating config.mk 2023-09-26T05:23:16,467 config.status: creating htslib.pc.tmp 2023-09-26T05:23:16,510 config.status: creating config.h 2023-09-26T05:23:16,541 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-09-26T05:23:16,705 [ 17%] Performing build step for 'htslib' 2023-09-26T05:23:20,590 Updating htscodecs/htscodecs/version.h : #define HTSCODECS_VERSION_TEXT "1.5.1" 2023-09-26T05:24:37,276 [ 20%] No install step for 'htslib' 2023-09-26T05:24:37,414 [ 22%] Completed 'htslib' 2023-09-26T05:24:37,646 [ 22%] Built target htslib 2023-09-26T05:24:37,758 [ 25%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-09-26T05:24:50,865 [ 28%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-09-26T05:24:58,111 [ 31%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-09-26T05:25:02,952 [ 34%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-09-26T05:25:09,777 [ 37%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-09-26T05:25:14,174 [ 40%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-09-26T05:25:17,482 [ 42%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-09-26T05:25:18,967 [ 45%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-09-26T05:25:20,862 [ 48%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-09-26T05:25:24,905 [ 51%] Linking CXX shared module /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:25:26,541 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-26T05:25:26,542 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-26T05:25:35,322 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-09-26T05:25:35,323 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GVec.hh:107:24: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-09-26T05:25:35,324 107 | fArray=new OBJ[NewCapacity]; 2023-09-26T05:25:35,324 | ^ 2023-09-26T05:25:35,325 /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-09-26T05:25:35,325 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-09-26T05:25:35,326 | ^ 2023-09-26T05:25:38,640 In member function ‘Push’, 2023-09-26T05:25:38,640 inlined from ‘fgetline’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.cpp:530:11, 2023-09-26T05:25:38,641 inlined from ‘start’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/tmerge.cpp:360:28, 2023-09-26T05:25:38,641 inlined from ‘splam_extract’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_extract.cpp:182:37: 2023-09-26T05:25:38,642 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-26T05:25:38,642 564 | GDynArray_ADD(item); 2023-09-26T05:25:38,643 | ^ 2023-09-26T05:25:38,644 In function ‘GRealloc’, 2023-09-26T05:25:38,645 inlined from ‘Clear’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:633:6, 2023-09-26T05:25:38,645 inlined from ‘growTo’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:577:28, 2023-09-26T05:25:38,646 inlined from ‘Grow’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:544:12, 2023-09-26T05:25:38,647 inlined from ‘Push’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:564:6, 2023-09-26T05:25:38,648 inlined from ‘fgetline’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.cpp:530:11, 2023-09-26T05:25:38,648 inlined from ‘start’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/tmerge.cpp:360:28, 2023-09-26T05:25:38,649 inlined from ‘splam_extract’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_extract.cpp:182:37: 2023-09-26T05:25:38,650 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:280:21: note: at offset -1 into destination object of size 16 allocated by ‘realloc’ 2023-09-26T05:25:38,650 280 | void *p=realloc(*ptr,size); 2023-09-26T05:25:38,651 | ^ 2023-09-26T05:25:38,651 In member function ‘Push’, 2023-09-26T05:25:38,652 inlined from ‘fgetline’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.cpp:530:11, 2023-09-26T05:25:38,653 inlined from ‘start’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/tmerge.cpp:360:28, 2023-09-26T05:25:38,653 inlined from ‘splam_extract’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_extract.cpp:182:37: 2023-09-26T05:25:38,654 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-26T05:25:38,655 564 | GDynArray_ADD(item); 2023-09-26T05:25:38,655 | ^ 2023-09-26T05:25:38,656 In function ‘GRealloc’, 2023-09-26T05:25:38,656 inlined from ‘Clear’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:633:6, 2023-09-26T05:25:38,657 inlined from ‘growTo’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:577:28, 2023-09-26T05:25:38,657 inlined from ‘Grow’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:544:12, 2023-09-26T05:25:38,658 inlined from ‘Push’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:564:6, 2023-09-26T05:25:38,658 inlined from ‘fgetline’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.cpp:530:11, 2023-09-26T05:25:38,658 inlined from ‘start’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/tmerge.cpp:360:28, 2023-09-26T05:25:38,659 inlined from ‘splam_extract’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_extract.cpp:182:37: 2023-09-26T05:25:38,659 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:272:20: note: at offset -1 into destination object of size 16 allocated by ‘malloc’ 2023-09-26T05:25:38,660 272 | void *p=malloc(size); 2023-09-26T05:25:38,660 | ^ 2023-09-26T05:25:51,423 [ 51%] Built target splam_extract 2023-09-26T05:25:51,532 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-09-26T05:25:58,837 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-09-26T05:25:58,838 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,838 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T05:25:58,839 | ^~~~~~~~~~ 2023-09-26T05:25:58,840 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,841 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T05:25:58,841 | ^~~~~~ 2023-09-26T05:25:58,842 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,843 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T05:25:58,843 | ^~~~ 2023-09-26T05:25:58,844 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,844 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T05:25:58,845 | ^~~~ 2023-09-26T05:25:58,846 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,846 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T05:25:58,847 | ^~~~~~~~~~ 2023-09-26T05:25:58,848 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,849 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T05:25:58,849 | ^~~~~~ 2023-09-26T05:25:58,850 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,850 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T05:25:58,851 | ^~~~ 2023-09-26T05:25:58,851 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,852 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T05:25:58,852 | ^~~~ 2023-09-26T05:25:58,853 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,854 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:25:58,855 | ^~~~~~~~~~ 2023-09-26T05:25:58,856 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,856 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:25:58,857 | ^~~~~~~ 2023-09-26T05:25:58,858 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,859 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:25:58,859 | ^~~~ 2023-09-26T05:25:58,860 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,861 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:25:58,862 | ^~~~ 2023-09-26T05:25:58,862 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,863 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:25:58,864 | ^~~~ 2023-09-26T05:25:58,864 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,865 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:25:58,866 | ^~~~~~~~~~ 2023-09-26T05:25:58,866 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,867 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:25:58,867 | ^~~~~~~ 2023-09-26T05:25:58,868 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,869 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:25:58,869 | ^~~~ 2023-09-26T05:25:58,870 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,871 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:25:58,872 | ^~~~ 2023-09-26T05:25:58,872 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:25:58,873 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:25:58,874 | ^~~~ 2023-09-26T05:26:04,865 [ 57%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-09-26T05:26:14,422 [ 60%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-09-26T05:26:15,006 [ 62%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-09-26T05:26:15,617 [ 65%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-09-26T05:26:15,954 [ 68%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-09-26T05:26:18,080 [ 71%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-09-26T05:26:21,347 [ 74%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-09-26T05:26:25,985 [ 77%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-09-26T05:26:31,330 [ 80%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-09-26T05:26:36,171 [ 82%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-09-26T05:26:40,916 [ 85%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-09-26T05:26:44,607 [ 88%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-09-26T05:26:46,695 [ 91%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-09-26T05:26:48,990 [ 94%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-09-26T05:26:50,078 [ 97%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-09-26T05:26:51,313 [100%] Linking CXX shared module /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:26:52,304 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-26T05:26:52,305 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-26T05:27:13,878 [100%] Built target splam_clean 2023-09-26T05:27:14,267 -- The C compiler identification is GNU 12.2.0 2023-09-26T05:27:14,585 -- The CXX compiler identification is GNU 12.2.0 2023-09-26T05:27:14,636 -- Detecting C compiler ABI info 2023-09-26T05:27:15,029 -- Detecting C compiler ABI info - done 2023-09-26T05:27:15,075 -- Check for working C compiler: /usr/bin/cc - skipped 2023-09-26T05:27:15,077 -- Detecting C compile features 2023-09-26T05:27:15,079 -- Detecting C compile features - done 2023-09-26T05:27:15,100 -- Detecting CXX compiler ABI info 2023-09-26T05:27:15,519 -- Detecting CXX compiler ABI info - done 2023-09-26T05:27:15,567 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-09-26T05:27:15,568 -- Detecting CXX compile features 2023-09-26T05:27:15,571 -- Detecting CXX compile features - done 2023-09-26T05:27:15,597 -- pybind11 v2.11.0 dev1 2023-09-26T05:27:15,685 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.6") 2023-09-26T05:27:15,791 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.11.so 2023-09-26T05:27:15,801 -- Performing Test HAS_FLTO 2023-09-26T05:27:16,406 -- Performing Test HAS_FLTO - Success 2023-09-26T05:27:16,454 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 2023-09-26T05:27:16,455 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/htslib 2023-09-26T05:27:16,456 LIBRARY_OUTPUT_DIRECTORY: 2023-09-26T05:27:16,575 EXAMPLE_VERSION_INFO: 1.0.2 2023-09-26T05:27:16,576 -- Configuring done 2023-09-26T05:27:16,664 -- Generating done 2023-09-26T05:27:16,676 -- Build files have been written to: /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/build/temp.linux-armv7l-cpython-311/splam_clean 2023-09-26T05:27:16,922 [ 2%] Creating directories for 'htslib' 2023-09-26T05:27:17,709 [ 5%] No download step for 'htslib' 2023-09-26T05:27:17,833 [ 8%] No update step for 'htslib' 2023-09-26T05:27:17,948 [ 11%] No patch step for 'htslib' 2023-09-26T05:27:18,063 [ 14%] Performing configure step for 'htslib' 2023-09-26T05:27:22,719 checking for gcc... gcc 2023-09-26T05:27:23,096 checking whether the C compiler works... yes 2023-09-26T05:27:23,099 checking for C compiler default output file name... a.out 2023-09-26T05:27:23,260 checking for suffix of executables... 2023-09-26T05:27:23,446 checking whether we are cross compiling... no 2023-09-26T05:27:23,527 checking for suffix of object files... o 2023-09-26T05:27:23,599 checking whether the compiler supports GNU C... yes 2023-09-26T05:27:23,672 checking whether gcc accepts -g... yes 2023-09-26T05:27:23,870 checking for gcc option to enable C11 features... none needed 2023-09-26T05:27:23,872 checking for ranlib... ranlib 2023-09-26T05:27:23,881 checking for grep that handles long lines and -e... /usr/bin/grep 2023-09-26T05:27:23,956 checking for C compiler warning flags... -Wall 2023-09-26T05:27:24,123 checking for gcc options needed to detect all undeclared functions... none needed 2023-09-26T05:27:24,209 checking for stdio.h... yes 2023-09-26T05:27:24,317 checking for stdlib.h... yes 2023-09-26T05:27:24,432 checking for string.h... yes 2023-09-26T05:27:24,554 checking for inttypes.h... yes 2023-09-26T05:27:24,704 checking for stdint.h... yes 2023-09-26T05:27:24,823 checking for strings.h... yes 2023-09-26T05:27:24,944 checking for sys/stat.h... yes 2023-09-26T05:27:25,065 checking for sys/types.h... yes 2023-09-26T05:27:25,196 checking for unistd.h... yes 2023-09-26T05:27:25,350 checking for sys/param.h... yes 2023-09-26T05:27:25,555 checking whether _XOPEN_SOURCE is declared... no 2023-09-26T05:27:25,727 checking C compiler flags needed for ssse3... none 2023-09-26T05:27:25,898 checking C compiler flags needed for popcnt... none 2023-09-26T05:27:26,070 checking C compiler flags needed for sse4.1... none 2023-09-26T05:27:26,275 checking C compiler flags needed for avx2... none 2023-09-26T05:27:26,448 checking C compiler flags needed for avx512f... none 2023-09-26T05:27:26,452 checking for pkg-config... /usr/bin/pkg-config 2023-09-26T05:27:26,457 checking pkg-config is at least version 0.9.0... yes 2023-09-26T05:27:26,459 checking for special C compiler options needed for large files... no 2023-09-26T05:27:26,638 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-09-26T05:27:26,651 checking shared library type for unknown-Linux... plain .so 2023-09-26T05:27:26,824 checking whether the linker supports versioned symbols... yes 2023-09-26T05:27:27,008 checking whether the compiler accepts -fvisibility=hidden... yes 2023-09-26T05:27:27,256 checking build system type... armv7l-unknown-linux-gnueabihf 2023-09-26T05:27:27,257 checking host system type... armv7l-unknown-linux-gnueabihf 2023-09-26T05:27:27,441 checking for getpagesize... yes 2023-09-26T05:27:27,778 checking for working mmap... yes 2023-09-26T05:27:27,996 checking for gmtime_r... yes 2023-09-26T05:27:28,181 checking for fsync... yes 2023-09-26T05:27:28,369 checking for drand48... yes 2023-09-26T05:27:28,570 checking for srand48_deterministic... no 2023-09-26T05:27:28,766 checking whether fdatasync is declared... yes 2023-09-26T05:27:28,949 checking for fdatasync... yes 2023-09-26T05:27:29,351 checking for library containing log... -lm 2023-09-26T05:27:29,476 checking for zlib.h... yes 2023-09-26T05:27:29,658 checking for inflate in -lz... yes 2023-09-26T05:27:29,840 checking for library containing recv... none required 2023-09-26T05:27:29,925 checking for bzlib.h... yes 2023-09-26T05:27:30,108 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-09-26T05:27:30,240 checking whether htscodecs files are present... yes 2023-09-26T05:27:30,243 configure: WARNING: GCS support not enabled: requires libcurl support 2023-09-26T05:27:30,244 configure: WARNING: S3 support not enabled: requires libcurl support 2023-09-26T05:27:30,505 checking for library containing regcomp... none required 2023-09-26T05:27:30,571 configure: creating ./config.status 2023-09-26T05:27:30,860 config.status: creating config.mk 2023-09-26T05:27:30,900 config.status: creating htslib.pc.tmp 2023-09-26T05:27:30,945 config.status: creating config.h 2023-09-26T05:27:30,964 config.status: config.h is unchanged 2023-09-26T05:27:30,975 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-09-26T05:27:31,141 [ 17%] Performing build step for 'htslib' 2023-09-26T05:27:31,638 [ 20%] No install step for 'htslib' 2023-09-26T05:27:31,757 [ 22%] Completed 'htslib' 2023-09-26T05:27:31,913 [ 22%] Built target htslib 2023-09-26T05:27:32,013 [ 25%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-09-26T05:27:44,177 [ 28%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-09-26T05:27:48,835 [ 31%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-09-26T05:27:52,059 [ 34%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-09-26T05:27:56,786 [ 37%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-09-26T05:28:00,466 [ 40%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-09-26T05:28:02,579 [ 42%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-09-26T05:28:04,032 [ 45%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-09-26T05:28:05,358 [ 48%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-09-26T05:28:06,606 [ 51%] Linking CXX shared module /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:28:07,917 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-26T05:28:07,918 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-26T05:28:15,112 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-09-26T05:28:15,113 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GVec.hh:107:24: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-09-26T05:28:15,113 107 | fArray=new OBJ[NewCapacity]; 2023-09-26T05:28:15,114 | ^ 2023-09-26T05:28:15,115 /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-09-26T05:28:15,115 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-09-26T05:28:15,116 | ^ 2023-09-26T05:28:18,430 In member function ‘Push’, 2023-09-26T05:28:18,431 inlined from ‘fgetline’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.cpp:530:11, 2023-09-26T05:28:18,431 inlined from ‘start’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/tmerge.cpp:360:28, 2023-09-26T05:28:18,432 inlined from ‘splam_extract’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_extract.cpp:182:37: 2023-09-26T05:28:18,433 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-26T05:28:18,433 564 | GDynArray_ADD(item); 2023-09-26T05:28:18,434 | ^ 2023-09-26T05:28:18,435 In function ‘GRealloc’, 2023-09-26T05:28:18,435 inlined from ‘Clear’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:633:6, 2023-09-26T05:28:18,436 inlined from ‘growTo’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:577:28, 2023-09-26T05:28:18,437 inlined from ‘Grow’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:544:12, 2023-09-26T05:28:18,437 inlined from ‘Push’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:564:6, 2023-09-26T05:28:18,438 inlined from ‘fgetline’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.cpp:530:11, 2023-09-26T05:28:18,439 inlined from ‘start’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/tmerge.cpp:360:28, 2023-09-26T05:28:18,440 inlined from ‘splam_extract’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_extract.cpp:182:37: 2023-09-26T05:28:18,441 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:280:21: note: at offset -1 into destination object of size 16 allocated by ‘realloc’ 2023-09-26T05:28:18,441 280 | void *p=realloc(*ptr,size); 2023-09-26T05:28:18,442 | ^ 2023-09-26T05:28:18,442 In member function ‘Push’, 2023-09-26T05:28:18,442 inlined from ‘fgetline’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.cpp:530:11, 2023-09-26T05:28:18,443 inlined from ‘start’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/tmerge.cpp:360:28, 2023-09-26T05:28:18,443 inlined from ‘splam_extract’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_extract.cpp:182:37: 2023-09-26T05:28:18,444 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-26T05:28:18,444 564 | GDynArray_ADD(item); 2023-09-26T05:28:18,445 | ^ 2023-09-26T05:28:18,445 In function ‘GRealloc’, 2023-09-26T05:28:18,446 inlined from ‘Clear’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:633:6, 2023-09-26T05:28:18,446 inlined from ‘growTo’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:577:28, 2023-09-26T05:28:18,447 inlined from ‘Grow’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:544:12, 2023-09-26T05:28:18,447 inlined from ‘Push’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:564:6, 2023-09-26T05:28:18,448 inlined from ‘fgetline’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.cpp:530:11, 2023-09-26T05:28:18,449 inlined from ‘start’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/tmerge.cpp:360:28, 2023-09-26T05:28:18,449 inlined from ‘splam_extract’ at /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_extract.cpp:182:37: 2023-09-26T05:28:18,450 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/include/gclib/GBase.h:272:20: note: at offset -1 into destination object of size 16 allocated by ‘malloc’ 2023-09-26T05:28:18,451 272 | void *p=malloc(size); 2023-09-26T05:28:18,452 | ^ 2023-09-26T05:28:30,225 [ 51%] Built target splam_extract 2023-09-26T05:28:30,334 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-09-26T05:28:36,680 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-09-26T05:28:36,681 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,682 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T05:28:36,682 | ^~~~~~~~~~ 2023-09-26T05:28:36,683 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,684 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T05:28:36,684 | ^~~~~~ 2023-09-26T05:28:36,685 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,686 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T05:28:36,686 | ^~~~ 2023-09-26T05:28:36,687 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,688 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-26T05:28:36,688 | ^~~~ 2023-09-26T05:28:36,689 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,689 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T05:28:36,690 | ^~~~~~~~~~ 2023-09-26T05:28:36,690 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,691 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T05:28:36,692 | ^~~~~~ 2023-09-26T05:28:36,692 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,693 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T05:28:36,694 | ^~~~ 2023-09-26T05:28:36,694 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,695 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-26T05:28:36,696 | ^~~~ 2023-09-26T05:28:36,696 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,697 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:28:36,698 | ^~~~~~~~~~ 2023-09-26T05:28:36,699 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,700 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:28:36,701 | ^~~~~~~ 2023-09-26T05:28:36,701 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,702 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:28:36,702 | ^~~~ 2023-09-26T05:28:36,703 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,704 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:28:36,704 | ^~~~ 2023-09-26T05:28:36,705 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,706 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-26T05:28:36,706 | ^~~~ 2023-09-26T05:28:36,707 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,707 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:28:36,708 | ^~~~~~~~~~ 2023-09-26T05:28:36,709 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,710 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:28:36,711 | ^~~~~~~ 2023-09-26T05:28:36,711 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,712 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:28:36,713 | ^~~~ 2023-09-26T05:28:36,713 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,714 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:28:36,715 | ^~~~ 2023-09-26T05:28:36,716 /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:28:36,716 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-26T05:28:36,717 | ^~~~ 2023-09-26T05:28:42,715 [ 57%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-09-26T05:28:52,255 [ 60%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-09-26T05:28:52,817 [ 62%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-09-26T05:28:53,398 [ 65%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-09-26T05:28:53,733 [ 68%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-09-26T05:28:55,855 [ 71%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-09-26T05:28:59,079 [ 74%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-09-26T05:29:03,683 [ 77%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-09-26T05:29:09,021 [ 80%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-09-26T05:29:13,850 [ 82%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-09-26T05:29:18,631 [ 85%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-09-26T05:29:23,633 [ 88%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-09-26T05:29:25,717 [ 91%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-09-26T05:29:27,078 [ 94%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-09-26T05:29:28,073 [ 97%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-09-26T05:29:29,264 [100%] Linking CXX shared module /tmp/pip-wheel-ur6fwidg/splam_d2d84de212694d1f893da5ce5584777e/build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:29:30,482 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-26T05:29:30,482 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-26T05:29:51,870 [100%] Built target splam_clean 2023-09-26T05:29:51,965 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-26T05:29:51,966 !! 2023-09-26T05:29:51,967 ******************************************************************************** 2023-09-26T05:29:51,968 Please avoid running ``setup.py`` directly. 2023-09-26T05:29:51,968 Instead, use pypa/build, pypa/installer or other 2023-09-26T05:29:51,969 standards-based tools. 2023-09-26T05:29:51,970 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-26T05:29:51,972 ******************************************************************************** 2023-09-26T05:29:51,973 !! 2023-09-26T05:29:51,974 self.initialize_options() 2023-09-26T05:29:51,991 installing to build/bdist.linux-armv7l/wheel 2023-09-26T05:29:51,992 running install 2023-09-26T05:29:52,016 running install_lib 2023-09-26T05:29:52,040 creating build/bdist.linux-armv7l 2023-09-26T05:29:52,041 creating build/bdist.linux-armv7l/wheel 2023-09-26T05:29:52,042 copying build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-09-26T05:29:52,069 copying build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-09-26T05:29:52,100 creating build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:29:52,101 copying build/lib.linux-armv7l-cpython-311/splam/main.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:29:52,104 copying build/lib.linux-armv7l-cpython-311/splam/prediction.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:29:52,106 copying build/lib.linux-armv7l-cpython-311/splam/__init__.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:29:52,108 copying build/lib.linux-armv7l-cpython-311/splam/header.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:29:52,109 copying build/lib.linux-armv7l-cpython-311/splam/clean_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:29:52,111 copying build/lib.linux-armv7l-cpython-311/splam/SPLAM.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:29:52,113 copying build/lib.linux-armv7l-cpython-311/splam/chr_size.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:29:52,115 copying build/lib.linux-armv7l-cpython-311/splam/config.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:29:52,117 copying build/lib.linux-armv7l-cpython-311/splam/parse.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:29:52,119 copying build/lib.linux-armv7l-cpython-311/splam/extract_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-26T05:29:52,121 running install_egg_info 2023-09-26T05:29:52,182 running egg_info 2023-09-26T05:29:52,208 writing splam.egg-info/PKG-INFO 2023-09-26T05:29:52,211 writing dependency_links to splam.egg-info/dependency_links.txt 2023-09-26T05:29:52,213 writing entry points to splam.egg-info/entry_points.txt 2023-09-26T05:29:52,214 writing requirements to splam.egg-info/requires.txt 2023-09-26T05:29:52,216 writing top-level names to splam.egg-info/top_level.txt 2023-09-26T05:29:52,244 reading manifest file 'splam.egg-info/SOURCES.txt' 2023-09-26T05:29:52,446 reading manifest template 'MANIFEST.in' 2023-09-26T05:29:52,785 adding license file 'LICENSE' 2023-09-26T05:29:52,843 writing manifest file 'splam.egg-info/SOURCES.txt' 2023-09-26T05:29:52,848 Copying splam.egg-info to build/bdist.linux-armv7l/wheel/splam-1.0.2-py3.11.egg-info 2023-09-26T05:29:52,874 running install_scripts 2023-09-26T05:29:52,939 creating build/bdist.linux-armv7l/wheel/splam-1.0.2.dist-info/WHEEL 2023-09-26T05:29:52,942 creating '/tmp/pip-wheel-n2shg6ng/splam-1.0.2-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-26T05:29:53,227 adding 'splam_clean.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T05:29:53,618 adding 'splam_extract.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T05:29:53,630 adding 'splam/SPLAM.py' 2023-09-26T05:29:53,632 adding 'splam/__init__.py' 2023-09-26T05:29:53,638 adding 'splam/chr_size.py' 2023-09-26T05:29:53,640 adding 'splam/clean_gff.py' 2023-09-26T05:29:53,642 adding 'splam/config.py' 2023-09-26T05:29:53,644 adding 'splam/extract_gff.py' 2023-09-26T05:29:53,645 adding 'splam/header.py' 2023-09-26T05:29:53,647 adding 'splam/main.py' 2023-09-26T05:29:53,649 adding 'splam/parse.py' 2023-09-26T05:29:53,652 adding 'splam/prediction.py' 2023-09-26T05:29:53,654 adding 'splam-1.0.2.dist-info/LICENSE' 2023-09-26T05:29:53,656 adding 'splam-1.0.2.dist-info/METADATA' 2023-09-26T05:29:53,657 adding 'splam-1.0.2.dist-info/WHEEL' 2023-09-26T05:29:53,658 adding 'splam-1.0.2.dist-info/entry_points.txt' 2023-09-26T05:29:53,659 adding 'splam-1.0.2.dist-info/top_level.txt' 2023-09-26T05:29:53,660 adding 'splam-1.0.2.dist-info/RECORD' 2023-09-26T05:29:53,693 removing build/bdist.linux-armv7l/wheel 2023-09-26T05:29:53,814 Building wheel for splam (setup.py): finished with status 'done' 2023-09-26T05:29:53,829 Created wheel for splam: filename=splam-1.0.2-cp311-cp311-linux_armv7l.whl size=920393 sha256=fe5ce78db4675866b54d6a1df1a9a9a08615322bb2903f497b5ddd02d99ef301 2023-09-26T05:29:53,832 Stored in directory: /tmp/pip-ephem-wheel-cache-9ok4vf24/wheels/fe/bb/00/98d995787e34c6a3099255f4267575bdca946998f524ed1385 2023-09-26T05:29:53,850 Successfully built splam 2023-09-26T05:29:53,896 Removed build tracker: '/tmp/pip-build-tracker-z1poyoe9'