2023-09-27T12:15:32,934 Created temporary directory: /tmp/pip-build-tracker-4xta1wl7
2023-09-27T12:15:32,935 Initialized build tracking at /tmp/pip-build-tracker-4xta1wl7
2023-09-27T12:15:32,935 Created build tracker: /tmp/pip-build-tracker-4xta1wl7
2023-09-27T12:15:32,936 Entered build tracker: /tmp/pip-build-tracker-4xta1wl7
2023-09-27T12:15:32,936 Created temporary directory: /tmp/pip-wheel-_ss46zg_
2023-09-27T12:15:32,940 Created temporary directory: /tmp/pip-ephem-wheel-cache-ro8usk0a
2023-09-27T12:15:32,961 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-27T12:15:32,965 2 location(s) to search for versions of sieveai:
2023-09-27T12:15:32,965 * https://pypi.org/simple/sieveai/
2023-09-27T12:15:32,965 * https://www.piwheels.org/simple/sieveai/
2023-09-27T12:15:32,966 Fetching project page and analyzing links: https://pypi.org/simple/sieveai/
2023-09-27T12:15:32,967 Getting page https://pypi.org/simple/sieveai/
2023-09-27T12:15:32,968 Found index url https://pypi.org/simple/
2023-09-27T12:15:33,223 Fetched page https://pypi.org/simple/sieveai/ as application/vnd.pypi.simple.v1+json
2023-09-27T12:15:33,224   Found link https://files.pythonhosted.org/packages/53/fb/31727fc4b169b880f83a2a6665e389bbbb64664ef2cd744a9a359b850c88/SieveAI-0.5.2023090513.tar.gz (from https://pypi.org/simple/sieveai/), version: 0.5.2023090513
2023-09-27T12:15:33,225 Fetching project page and analyzing links: https://www.piwheels.org/simple/sieveai/
2023-09-27T12:15:33,225 Getting page https://www.piwheels.org/simple/sieveai/
2023-09-27T12:15:33,227 Found index url https://www.piwheels.org/simple/
2023-09-27T12:15:33,427 Fetched page https://www.piwheels.org/simple/sieveai/ as text/html
2023-09-27T12:15:33,428 Skipping link: not a file: https://www.piwheels.org/simple/sieveai/
2023-09-27T12:15:33,428 Skipping link: not a file: https://pypi.org/simple/sieveai/
2023-09-27T12:15:33,447 Given no hashes to check 1 links for project 'sieveai': discarding no candidates
2023-09-27T12:15:33,473 Collecting sieveai==0.5.2023090513
2023-09-27T12:15:33,477   Created temporary directory: /tmp/pip-unpack-63c1q6rt
2023-09-27T12:15:33,717   Downloading SieveAI-0.5.2023090513.tar.gz (28 kB)
2023-09-27T12:15:33,784   Added sieveai==0.5.2023090513 from https://files.pythonhosted.org/packages/53/fb/31727fc4b169b880f83a2a6665e389bbbb64664ef2cd744a9a359b850c88/SieveAI-0.5.2023090513.tar.gz to build tracker '/tmp/pip-build-tracker-4xta1wl7'
2023-09-27T12:15:33,786   Running setup.py (path:/tmp/pip-wheel-_ss46zg_/sieveai_240d579d6a79412087d7d7b128268b5c/setup.py) egg_info for package sieveai
2023-09-27T12:15:33,787   Created temporary directory: /tmp/pip-pip-egg-info-qwg0bnjy
2023-09-27T12:15:33,787   Preparing metadata (setup.py): started
2023-09-27T12:15:33,789   Running command python setup.py egg_info
2023-09-27T12:15:34,202   Traceback (most recent call last):
2023-09-27T12:15:34,202     File "<string>", line 2, in <module>
2023-09-27T12:15:34,203     File "<pip-setuptools-caller>", line 34, in <module>
2023-09-27T12:15:34,203     File "/tmp/pip-wheel-_ss46zg_/sieveai_240d579d6a79412087d7d7b128268b5c/setup.py", line 2, in <module>
2023-09-27T12:15:34,204       from sieveai import *
2023-09-27T12:15:34,205     File "/tmp/pip-wheel-_ss46zg_/sieveai_240d579d6a79412087d7d7b128268b5c/sieveai/__init__.py", line 9, in <module>
2023-09-27T12:15:34,206       from .exe import Vina
2023-09-27T12:15:34,206     File "/tmp/pip-wheel-_ss46zg_/sieveai_240d579d6a79412087d7d7b128268b5c/sieveai/exe/__init__.py", line 1, in <module>
2023-09-27T12:15:34,207       from .Vina import Vina
2023-09-27T12:15:34,208     File "/tmp/pip-wheel-_ss46zg_/sieveai_240d579d6a79412087d7d7b128268b5c/sieveai/exe/Vina.py", line 2, in <module>
2023-09-27T12:15:34,209       from pdbtools.pdb_selaltloc import select_by_occupancy as selAltLoc
2023-09-27T12:15:34,210   ModuleNotFoundError: No module named 'pdbtools'
2023-09-27T12:15:34,273   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-09-27T12:15:34,286   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-09-27T12:15:34,286   exec(compile('"'"''"'"''"'"'
2023-09-27T12:15:34,286   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-27T12:15:34,286   #
2023-09-27T12:15:34,286   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-27T12:15:34,286   #   import from `distutils.core` to work with newer packaging standards.
2023-09-27T12:15:34,286   # - It provides a clear error message when setuptools is not installed.
2023-09-27T12:15:34,286   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-27T12:15:34,286   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-27T12:15:34,286   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-27T12:15:34,286   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-27T12:15:34,286   import os, sys, tokenize
2023-09-27T12:15:34,286   
2023-09-27T12:15:34,286   try:
2023-09-27T12:15:34,286       import setuptools
2023-09-27T12:15:34,286   except ImportError as error:
2023-09-27T12:15:34,286       print(
2023-09-27T12:15:34,286           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-27T12:15:34,286           "the build environment.",
2023-09-27T12:15:34,286           file=sys.stderr,
2023-09-27T12:15:34,286       )
2023-09-27T12:15:34,286       sys.exit(1)
2023-09-27T12:15:34,286   
2023-09-27T12:15:34,286   __file__ = %r
2023-09-27T12:15:34,286   sys.argv[0] = __file__
2023-09-27T12:15:34,286   
2023-09-27T12:15:34,286   if os.path.exists(__file__):
2023-09-27T12:15:34,286       filename = __file__
2023-09-27T12:15:34,286       with tokenize.open(__file__) as f:
2023-09-27T12:15:34,286           setup_py_code = f.read()
2023-09-27T12:15:34,286   else:
2023-09-27T12:15:34,286       filename = "<auto-generated setuptools caller>"
2023-09-27T12:15:34,286       setup_py_code = "from setuptools import setup; setup()"
2023-09-27T12:15:34,286   
2023-09-27T12:15:34,286   exec(compile(setup_py_code, filename, "exec"))
2023-09-27T12:15:34,286   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-_ss46zg_/sieveai_240d579d6a79412087d7d7b128268b5c/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-qwg0bnjy[/]
2023-09-27T12:15:34,287   [bold magenta]cwd[/]: /tmp/pip-wheel-_ss46zg_/sieveai_240d579d6a79412087d7d7b128268b5c/
2023-09-27T12:15:34,288   Preparing metadata (setup.py): finished with status 'error'
2023-09-27T12:15:34,290 ERROR: [present-rich] metadata generation failed
2023-09-27T12:15:34,295 Exception information:
2023-09-27T12:15:34,295 Traceback (most recent call last):
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-09-27T12:15:34,295     call_subprocess(
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-09-27T12:15:34,295     raise error
2023-09-27T12:15:34,295 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-09-27T12:15:34,295 
2023-09-27T12:15:34,295 The above exception was the direct cause of the following exception:
2023-09-27T12:15:34,295 
2023-09-27T12:15:34,295 Traceback (most recent call last):
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-27T12:15:34,295     status = run_func(*args)
2023-09-27T12:15:34,295              ^^^^^^^^^^^^^^^
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-27T12:15:34,295     return func(self, options, args)
2023-09-27T12:15:34,295            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-09-27T12:15:34,295     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-09-27T12:15:34,295                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-09-27T12:15:34,295     result = self._result = resolver.resolve(
2023-09-27T12:15:34,295                             ^^^^^^^^^^^^^^^^^
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-09-27T12:15:34,295     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-09-27T12:15:34,295             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-09-27T12:15:34,295     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-09-27T12:15:34,295     if not criterion.candidates:
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-09-27T12:15:34,295     return bool(self._sequence)
2023-09-27T12:15:34,295            ^^^^^^^^^^^^^^^^^^^^
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-09-27T12:15:34,295     return any(self)
2023-09-27T12:15:34,295            ^^^^^^^^^
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-09-27T12:15:34,295     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-09-27T12:15:34,295            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-09-27T12:15:34,295     candidate = func()
2023-09-27T12:15:34,295                 ^^^^^^
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-09-27T12:15:34,295     self._link_candidate_cache[link] = LinkCandidate(
2023-09-27T12:15:34,295                                        ^^^^^^^^^^^^^^
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-09-27T12:15:34,295     super().__init__(
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-09-27T12:15:34,295     self.dist = self._prepare()
2023-09-27T12:15:34,295                 ^^^^^^^^^^^^^^^
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-09-27T12:15:34,295     dist = self._prepare_distribution()
2023-09-27T12:15:34,295            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-09-27T12:15:34,295     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-09-27T12:15:34,295            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-09-27T12:15:34,295     return self._prepare_linked_requirement(req, parallel_builds)
2023-09-27T12:15:34,295            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-09-27T12:15:34,295     dist = _get_prepared_distribution(
2023-09-27T12:15:34,295            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-09-27T12:15:34,295     abstract_dist.prepare_distribution_metadata(
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-09-27T12:15:34,295     self.req.prepare_metadata()
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata
2023-09-27T12:15:34,295     self.metadata_directory = generate_metadata_legacy(
2023-09-27T12:15:34,295                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-27T12:15:34,295   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-09-27T12:15:34,295     raise MetadataGenerationFailed(package_details=details) from error
2023-09-27T12:15:34,295 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-09-27T12:15:34,308 Removed sieveai==0.5.2023090513 from https://files.pythonhosted.org/packages/53/fb/31727fc4b169b880f83a2a6665e389bbbb64664ef2cd744a9a359b850c88/SieveAI-0.5.2023090513.tar.gz from build tracker '/tmp/pip-build-tracker-4xta1wl7'
2023-09-27T12:15:34,308 Removed build tracker: '/tmp/pip-build-tracker-4xta1wl7'