2023-09-28T22:04:28,425 Created temporary directory: /tmp/pip-build-tracker-lxrgc_r4 2023-09-28T22:04:28,426 Initialized build tracking at /tmp/pip-build-tracker-lxrgc_r4 2023-09-28T22:04:28,427 Created build tracker: /tmp/pip-build-tracker-lxrgc_r4 2023-09-28T22:04:28,427 Entered build tracker: /tmp/pip-build-tracker-lxrgc_r4 2023-09-28T22:04:28,428 Created temporary directory: /tmp/pip-wheel-e0g0xeux 2023-09-28T22:04:28,431 Created temporary directory: /tmp/pip-ephem-wheel-cache-_nbamsmo 2023-09-28T22:04:28,452 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-28T22:04:28,456 2 location(s) to search for versions of splam: 2023-09-28T22:04:28,456 * https://pypi.org/simple/splam/ 2023-09-28T22:04:28,456 * https://www.piwheels.org/simple/splam/ 2023-09-28T22:04:28,456 Fetching project page and analyzing links: https://pypi.org/simple/splam/ 2023-09-28T22:04:28,457 Getting page https://pypi.org/simple/splam/ 2023-09-28T22:04:28,459 Found index url https://pypi.org/simple/ 2023-09-28T22:04:28,676 Fetched page https://pypi.org/simple/splam/ as application/vnd.pypi.simple.v1+json 2023-09-28T22:04:28,686 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/57/2a/d68f86c46b3152c9072975cb1c8b3f2345e0f71cea763c0635ca8c5e0261/splam-0.2.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,687 Found link https://files.pythonhosted.org/packages/ba/e8/4cf0f802bf26fd6587829e3688109caef6d26e13d19ce003ac876212da15/splam-0.2.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.9 2023-09-28T22:04:28,688 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f0/97/c31f00ac8a786213c4a50dd993cd04e61af08766e9559f244fb9c3929178/splam-0.2.10-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,688 Found link https://files.pythonhosted.org/packages/72/d1/671663c98d0cfca3218b880633390493fcebf9972175a7c4d2752259f2ea/splam-0.2.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.10 2023-09-28T22:04:28,689 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/ad/36/84239a43f206dfbfe07c6e6f76ef8c54235439210640aeacc8cb20e24c2e/splam-0.2.11-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,690 Found link https://files.pythonhosted.org/packages/c7/b3/96a175c203358d735694d7d5fd9261ef8683af968e14e473e823d159cee1/splam-0.2.11.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.11 2023-09-28T22:04:28,691 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/a5/f5/e15307ccb65ec9c225b7f1af65ee2c8880ba8eb049d386f4c9da459b2e1e/splam-0.2.12-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,692 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ba/88/6cac004352d4aa92aabdfd31f9b96919f8044db486185d3fd3c924583bc8/splam-0.2.12-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,693 Found link https://files.pythonhosted.org/packages/32/fa/a9795e9df88e8ea6c6788ae171702d5f9d8ce2c3472408ab0784f08a7b91/splam-0.2.12.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.12 2023-09-28T22:04:28,693 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/59/88/fefee12f8e44d6879a0970d37b42fc4dc54010f78b1ee91f6db366c1f125/splam-0.2.13-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,694 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/64/13/d601e5e99b31891d95bc0a6201367dab38f12faaadcb6aedbee7725dca71/splam-0.2.13-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,695 Found link https://files.pythonhosted.org/packages/cf/fb/2e5425fcdb2e5fd7ff963b174b1582816154fd0373bbc96edf4e851d272d/splam-0.2.13.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.13 2023-09-28T22:04:28,696 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/da/65/a129eabb1d673da72f1d7dfd3495c01c89da78569b7f2dba2c746a0c0f29/splam-0.2.14-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,696 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/79/2fdaa68664126c8c71bac526b41e1e35e4195879170c8129a8d482f3ae7b/splam-0.2.14-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,697 Found link https://files.pythonhosted.org/packages/9b/3f/d7dd2411528494ed5062665c3b5d5d7d8422fd11fa181d5fc01ea67d7dbf/splam-0.2.14.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.14 2023-09-28T22:04:28,698 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f4/9a/e7d1f5f16d77888ac5d0935e180fa2210e875ff487909519d6871e1301da/splam-0.2.15-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,698 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/40/b6/eda61824794c736e52c09353dfbbd70eea4d0f0ab31896f3688d269ab64b/splam-0.2.15-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,699 Found link https://files.pythonhosted.org/packages/29/d0/5e9ef93e49636308cb56b70a06c8932321cb60a4aae678d8bb1d213b52b5/splam-0.2.15.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.15 2023-09-28T22:04:28,700 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e5/17/caa4b05a6370f2d197ec174fe1968f63acc357db5923efca0860b3a5e141/splam-0.2.16-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,700 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fe/a5/d90a02293e34acf5515a8f435ae90afeb823336d6232a7bedf01436a00f9/splam-0.2.17-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,701 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ef/af/7db5183d8c36a250bb4547c58610624b4d1067ea0eb119addc8986ce6ec1/splam-0.2.17-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,702 Found link https://files.pythonhosted.org/packages/26/3a/0e89dd56f9617853061d7c4ed6a220a414a01bba9f0005e54da52a1ad22e/splam-0.2.17.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.17 2023-09-28T22:04:28,703 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/bd/50/ae02dcd9e7c53df59acc9ad83ac389a886e55254cd6953614d43f0eaac60/splam-0.3.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,703 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/78/0b/8b0b45b16922007f88c9b81357cde8b84f9ea45327104b00724024e722ec/splam-0.3.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,704 Found link https://files.pythonhosted.org/packages/e5/c7/4bf13e849aefc7cfdd94f142e6267e4937c61d7fb9fbfe1119953f6a5e72/splam-0.3.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.3.0 2023-09-28T22:04:28,705 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/55/d8079e937d1f568ac9358237871b9d4d6d28abf1e8e8ec2b8073db7b166a/splam-0.3.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,705 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6d/9f/5e7c396bd04da9866f89f51574bd3fec1e691b279116e4d4de92b75b6538/splam-1.0.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,706 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/56/ae/c9e443ec09db88b2b2aaa18ebc6b12751b321d731ce21964ee188067bb0f/splam-1.0.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,707 Found link https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.0 2023-09-28T22:04:28,708 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/43/45/27c64605655d3127bf6155bc060f98fb565e631553e4f0e0a53d3922ebf3/splam-1.0.1-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,708 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/4d/0b5427df4d5d74ba5a98e28805b45fee4b15d2cad1e9aa91069306c29da7/splam-1.0.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,709 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/da/e1/11ee65eb50a2f628f92249d84cd72eddbc1386afbc82c7410fceb627d995/splam-1.0.1-py3.9-linux-x86_64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,709 Found link https://files.pythonhosted.org/packages/ad/3c/5a2fcc44ca9afa6bc1cb4fe6a30ba6495f9c1359c6b610536cb6c7998ca1/splam-1.0.1.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.1 2023-09-28T22:04:28,710 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6a/e7/e7827b0d637f018ef8d18ea969985ce37ffa520fd1bf6d0e8d43d72b749e/splam-1.0.2-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,711 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f2/ba/94da0985b6db88ba663b4e56a395d74d04283a79d0fdf476763251f5679f/splam-1.0.2-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,712 Found link https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.2 2023-09-28T22:04:28,712 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/30/c9/23c10c8ee217996cc58e6f16ffc732657d1cb3011f7cbc41ebb51927bbbb/splam-1.0.3-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,713 Found link https://files.pythonhosted.org/packages/b3/80/1ff08f5e516c2ce233a75e61e8ce3dacc34b00bd2cae4fae0d01b0d758e9/splam-1.0.3.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.3 2023-09-28T22:04:28,714 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/70/bd/3aacba5a589a5a8d4688781f1376a822b1df05526355738a85f10a6f0c86/splam-1.0.4-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,715 Found link https://files.pythonhosted.org/packages/b3/ef/1c49f24a396880a7ac6773041c067d1418ca533df5018de37f1fb49f512a/splam-1.0.4.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.4 2023-09-28T22:04:28,715 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/54/7e/ce14252ed5cbc26ad69ffe8ec6909d91f2bed9f97749fb5ba0f43a935479/splam-1.0.5-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,716 Found link https://files.pythonhosted.org/packages/5f/dd/ac054961585d4e5d71c889e8840dc096a847ac38b04295f38dbe524718e5/splam-1.0.5.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.5 2023-09-28T22:04:28,717 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f7/1e/02d35d67ba3f32f629f40824705e8ef82b6a80914fef3ffa59bcea67c965/splam-1.0.6-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,718 Found link https://files.pythonhosted.org/packages/b2/7d/e8f8b51f071b0bc4e2a1a0cc31db50c9acecb68271cd5bd5e113c7442fed/splam-1.0.6.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.6 2023-09-28T22:04:28,719 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/1d/57/3fbf056633d3332ab938f761553161346599e27c5f5c66f605c08b4fb2b3/splam-1.0.7-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,720 Found link https://files.pythonhosted.org/packages/a5/b6/ffa6c7c753ce7d9989d0e3adcb5310ecf29429dce73ffe51f2b63434c9fc/splam-1.0.7.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.7 2023-09-28T22:04:28,720 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/35/fa/76bf21536e4f60a1caae0132889ab74457d9c75a9476c3d0ec7b578870af/splam-1.0.8-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,721 Found link https://files.pythonhosted.org/packages/a5/ad/6d3495d79895726b6df06f3cd667006e5316fa3235e6919b841057f6e666/splam-1.0.8.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.8 2023-09-28T22:04:28,722 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fc/24/c13538db2c354993494537d33e4138e39d65e83f947f55d6f9d599e12a63/splam-1.0.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,722 Found link https://files.pythonhosted.org/packages/4d/2c/303bafdffb18df8357ea5c7f2bc00f9e4afd9667b9f10b411091c3adc293/splam-1.0.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.9 2023-09-28T22:04:28,723 Fetching project page and analyzing links: https://www.piwheels.org/simple/splam/ 2023-09-28T22:04:28,724 Getting page https://www.piwheels.org/simple/splam/ 2023-09-28T22:04:28,726 Found index url https://www.piwheels.org/simple/ 2023-09-28T22:04:28,887 Fetched page https://www.piwheels.org/simple/splam/ as text/html 2023-09-28T22:04:28,901 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp311-cp311-linux_armv7l.whl#sha256=d1320847935923ec92d4a2441c4c910a3c2efdcfdb23dbb210455262b23d790f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,902 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp311-cp311-linux_armv6l.whl#sha256=d1320847935923ec92d4a2441c4c910a3c2efdcfdb23dbb210455262b23d790f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,903 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=7453657a38dcf0d7c2daaf93faf6a2938e28d036a3910105918ccff02dc54ca0 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,904 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=7453657a38dcf0d7c2daaf93faf6a2938e28d036a3910105918ccff02dc54ca0 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,904 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=c708c1c8ebbbb979a2a34a938458ac9a9555c23555f3385e0dd5b014a62f7c27 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,905 Skipping link: No binaries permitted for splam: 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https://www.piwheels.org/simple/splam/splam-1.0.2-cp37-cp37m-linux_armv6l.whl#sha256=0da1ce51d76a21042b3077b98b6ada39416083c473650dd277efe9003015c43f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,908 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=3eae037b5ef017f9e77bed8f4fe7c1a3ff0ff85eb9f7f8fb06204896db35df86 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,909 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=3eae037b5ef017f9e77bed8f4fe7c1a3ff0ff85eb9f7f8fb06204896db35df86 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,910 Skipping link: No binaries permitted for splam: 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https://www.piwheels.org/simple/splam/splam-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=1df2348f054c2c94911b9f0f12cb53ffd0d73bbb7a08e64ea0c6783ceee0aff8 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,912 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e8c3f060783b051d826051003c912986edb4ea0501a48a4dffd6184dc0e9ece4 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,913 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e8c3f060783b051d826051003c912986edb4ea0501a48a4dffd6184dc0e9ece4 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,914 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=a8181a29dd75196ac29a057a71ae8aa567d3180e65dbefd5f00ffc44d6ceaabb (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,914 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=a8181a29dd75196ac29a057a71ae8aa567d3180e65dbefd5f00ffc44d6ceaabb (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,915 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=db7f7a90b02b4b219de50c195ee1ca9b24be11aa7f75c3972daa508e5af03ed7 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,915 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=db7f7a90b02b4b219de50c195ee1ca9b24be11aa7f75c3972daa508e5af03ed7 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,915 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp39-cp39-linux_armv7l.whl#sha256=c3a1b0ed2154e6f57b99c5dc2f09741faf5870038b8f86b488481cbc1cea6038 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,916 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp39-cp39-linux_armv6l.whl#sha256=c3a1b0ed2154e6f57b99c5dc2f09741faf5870038b8f86b488481cbc1cea6038 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,916 Skipping link: No binaries permitted for splam: 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https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv7l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,920 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv6l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,921 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp37-cp37m-linux_armv7l.whl#sha256=198f24795b97dfeeb87bfd8760ef5894be763c7c872f489ea0c4292c781067b6 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,921 Skipping link: No binaries permitted for splam: 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https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv6l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,928 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv7l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,929 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv6l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-09-28T22:04:28,929 Skipping link: not a file: https://www.piwheels.org/simple/splam/ 2023-09-28T22:04:28,930 Skipping link: not a file: https://pypi.org/simple/splam/ 2023-09-28T22:04:28,950 Given no hashes to check 1 links for project 'splam': discarding no candidates 2023-09-28T22:04:28,967 Collecting splam==1.0.8 2023-09-28T22:04:28,970 Created temporary directory: /tmp/pip-unpack-bpz76xyr 2023-09-28T22:04:29,189 Downloading splam-1.0.8.tar.gz (41.0 MB) 2023-09-28T22:04:41,596 Added splam==1.0.8 from https://files.pythonhosted.org/packages/a5/ad/6d3495d79895726b6df06f3cd667006e5316fa3235e6919b841057f6e666/splam-1.0.8.tar.gz to build tracker '/tmp/pip-build-tracker-lxrgc_r4' 2023-09-28T22:04:41,598 Running setup.py (path:/tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/setup.py) egg_info for package splam 2023-09-28T22:04:41,599 Created temporary directory: /tmp/pip-pip-egg-info-me7nb02j 2023-09-28T22:04:41,600 Preparing metadata (setup.py): started 2023-09-28T22:04:41,601 Running command python setup.py egg_info 2023-09-28T22:04:42,636 running egg_info 2023-09-28T22:04:42,638 creating /tmp/pip-pip-egg-info-me7nb02j/splam.egg-info 2023-09-28T22:04:42,661 writing /tmp/pip-pip-egg-info-me7nb02j/splam.egg-info/PKG-INFO 2023-09-28T22:04:42,665 writing dependency_links to /tmp/pip-pip-egg-info-me7nb02j/splam.egg-info/dependency_links.txt 2023-09-28T22:04:42,666 writing entry points to /tmp/pip-pip-egg-info-me7nb02j/splam.egg-info/entry_points.txt 2023-09-28T22:04:42,668 writing requirements to /tmp/pip-pip-egg-info-me7nb02j/splam.egg-info/requires.txt 2023-09-28T22:04:42,669 writing top-level names to /tmp/pip-pip-egg-info-me7nb02j/splam.egg-info/top_level.txt 2023-09-28T22:04:42,670 writing manifest file '/tmp/pip-pip-egg-info-me7nb02j/splam.egg-info/SOURCES.txt' 2023-09-28T22:04:42,748 reading manifest file '/tmp/pip-pip-egg-info-me7nb02j/splam.egg-info/SOURCES.txt' 2023-09-28T22:04:42,749 reading manifest template 'MANIFEST.in' 2023-09-28T22:04:43,049 adding license file 'LICENSE' 2023-09-28T22:04:43,094 writing manifest file '/tmp/pip-pip-egg-info-me7nb02j/splam.egg-info/SOURCES.txt' 2023-09-28T22:04:43,205 Preparing metadata (setup.py): finished with status 'done' 2023-09-28T22:04:43,209 Source in /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a has version 1.0.8, which satisfies requirement splam==1.0.8 from https://files.pythonhosted.org/packages/a5/ad/6d3495d79895726b6df06f3cd667006e5316fa3235e6919b841057f6e666/splam-1.0.8.tar.gz 2023-09-28T22:04:43,210 Removed splam==1.0.8 from https://files.pythonhosted.org/packages/a5/ad/6d3495d79895726b6df06f3cd667006e5316fa3235e6919b841057f6e666/splam-1.0.8.tar.gz from build tracker '/tmp/pip-build-tracker-lxrgc_r4' 2023-09-28T22:04:43,216 Created temporary directory: /tmp/pip-unpack-4k3wutkk 2023-09-28T22:04:43,217 Created temporary directory: /tmp/pip-unpack-1p0ruql_ 2023-09-28T22:04:43,229 Building wheels for collected packages: splam 2023-09-28T22:04:43,233 Created temporary directory: /tmp/pip-wheel-2sf8wem6 2023-09-28T22:04:43,234 Building wheel for splam (setup.py): started 2023-09-28T22:04:43,235 Destination directory: /tmp/pip-wheel-2sf8wem6 2023-09-28T22:04:43,236 Running command python setup.py bdist_wheel 2023-09-28T22:04:44,198 running bdist_wheel 2023-09-28T22:04:44,270 running build 2023-09-28T22:04:44,271 running build_py 2023-09-28T22:04:44,297 creating build 2023-09-28T22:04:44,298 creating build/lib.linux-armv7l-cpython-311 2023-09-28T22:04:44,298 creating build/lib.linux-armv7l-cpython-311/splam 2023-09-28T22:04:44,300 copying splam/parse.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-28T22:04:44,302 copying splam/header.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-28T22:04:44,303 copying splam/__init__.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-28T22:04:44,305 copying splam/main.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-28T22:04:44,307 copying splam/clean_gff.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-28T22:04:44,309 copying splam/extract_gff.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-28T22:04:44,310 copying splam/SPLAM.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-28T22:04:44,312 copying splam/prediction.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-28T22:04:44,314 copying splam/chr_size.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-28T22:04:44,317 copying splam/config.py -> build/lib.linux-armv7l-cpython-311/splam 2023-09-28T22:04:44,318 running build_ext 2023-09-28T22:04:44,693 -- The C compiler identification is GNU 12.2.0 2023-09-28T22:04:45,020 -- The CXX compiler identification is GNU 12.2.0 2023-09-28T22:04:45,083 -- Detecting C compiler ABI info 2023-09-28T22:04:45,472 -- Detecting C compiler ABI info - done 2023-09-28T22:04:45,519 -- Check for working C compiler: /usr/bin/cc - skipped 2023-09-28T22:04:45,520 -- Detecting C compile features 2023-09-28T22:04:45,523 -- Detecting C compile features - done 2023-09-28T22:04:45,544 -- Detecting CXX compiler ABI info 2023-09-28T22:04:46,001 -- Detecting CXX compiler ABI info - done 2023-09-28T22:04:46,049 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-09-28T22:04:46,050 -- Detecting CXX compile features 2023-09-28T22:04:46,053 -- Detecting CXX compile features - done 2023-09-28T22:04:46,081 -- pybind11 v2.11.0 dev1 2023-09-28T22:04:46,159 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.6") 2023-09-28T22:04:46,240 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.11.so 2023-09-28T22:04:46,260 -- Performing Test HAS_FLTO 2023-09-28T22:04:47,122 -- Performing Test HAS_FLTO - Success 2023-09-28T22:04:47,177 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 2023-09-28T22:04:47,178 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/htslib 2023-09-28T22:04:47,178 LIBRARY_OUTPUT_DIRECTORY: 2023-09-28T22:04:47,262 EXAMPLE_VERSION_INFO: 1.0.8 2023-09-28T22:04:47,263 -- Configuring done 2023-09-28T22:04:47,352 -- Generating done 2023-09-28T22:04:47,365 -- Build files have been written to: /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/build/temp.linux-armv7l-cpython-311/splam_extract 2023-09-28T22:04:47,656 [ 2%] Creating directories for 'htslib' 2023-09-28T22:04:47,782 [ 5%] No download step for 'htslib' 2023-09-28T22:04:47,897 [ 8%] No update step for 'htslib' 2023-09-28T22:04:48,012 [ 11%] No patch step for 'htslib' 2023-09-28T22:04:48,127 [ 14%] Performing configure step for 'htslib' 2023-09-28T22:04:54,339 checking for gcc... gcc 2023-09-28T22:04:54,687 checking whether the C compiler works... yes 2023-09-28T22:04:54,688 checking for C compiler default output file name... a.out 2023-09-28T22:04:54,849 checking for suffix of executables... 2023-09-28T22:04:55,046 checking whether we are cross compiling... no 2023-09-28T22:04:55,127 checking for suffix of object files... o 2023-09-28T22:04:55,198 checking whether the compiler supports GNU C... yes 2023-09-28T22:04:55,271 checking whether gcc accepts -g... yes 2023-09-28T22:04:55,464 checking for gcc option to enable C11 features... none needed 2023-09-28T22:04:55,466 checking for ranlib... ranlib 2023-09-28T22:04:55,475 checking for grep that handles long lines and -e... /usr/bin/grep 2023-09-28T22:04:55,548 checking for C compiler warning flags... -Wall 2023-09-28T22:04:55,716 checking for gcc options needed to detect all undeclared functions... none needed 2023-09-28T22:04:55,801 checking for stdio.h... yes 2023-09-28T22:04:55,917 checking for stdlib.h... yes 2023-09-28T22:04:56,036 checking for string.h... yes 2023-09-28T22:04:56,184 checking for inttypes.h... yes 2023-09-28T22:04:56,311 checking for stdint.h... yes 2023-09-28T22:04:56,428 checking for strings.h... yes 2023-09-28T22:04:56,547 checking for sys/stat.h... yes 2023-09-28T22:04:56,666 checking for sys/types.h... yes 2023-09-28T22:04:56,799 checking for unistd.h... yes 2023-09-28T22:04:56,960 checking for sys/param.h... yes 2023-09-28T22:04:57,130 checking whether _XOPEN_SOURCE is declared... no 2023-09-28T22:04:57,303 checking C compiler flags needed for ssse3... none 2023-09-28T22:04:57,475 checking C compiler flags needed for popcnt... none 2023-09-28T22:04:57,660 checking C compiler flags needed for sse4.1... none 2023-09-28T22:04:57,882 checking C compiler flags needed for avx2... none 2023-09-28T22:04:58,054 checking C compiler flags needed for avx512f... none 2023-09-28T22:04:58,058 checking for pkg-config... /usr/bin/pkg-config 2023-09-28T22:04:58,066 checking pkg-config is at least version 0.9.0... yes 2023-09-28T22:04:58,068 checking for special C compiler options needed for large files... no 2023-09-28T22:04:58,247 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-09-28T22:04:58,259 checking shared library type for unknown-Linux... plain .so 2023-09-28T22:04:58,440 checking whether the linker supports versioned symbols... yes 2023-09-28T22:04:58,649 checking whether the compiler accepts -fvisibility=hidden... yes 2023-09-28T22:04:58,879 checking build system type... armv7l-unknown-linux-gnueabihf 2023-09-28T22:04:58,880 checking host system type... armv7l-unknown-linux-gnueabihf 2023-09-28T22:04:59,063 checking for getpagesize... yes 2023-09-28T22:04:59,417 checking for working mmap... yes 2023-09-28T22:04:59,612 checking for gmtime_r... yes 2023-09-28T22:04:59,798 checking for fsync... yes 2023-09-28T22:04:59,982 checking for drand48... yes 2023-09-28T22:05:00,199 checking for srand48_deterministic... no 2023-09-28T22:05:00,406 checking whether fdatasync is declared... yes 2023-09-28T22:05:00,588 checking for fdatasync... yes 2023-09-28T22:05:00,984 checking for library containing log... -lm 2023-09-28T22:05:01,097 checking for zlib.h... yes 2023-09-28T22:05:01,325 checking for inflate in -lz... yes 2023-09-28T22:05:01,509 checking for library containing recv... none required 2023-09-28T22:05:01,596 checking for bzlib.h... yes 2023-09-28T22:05:01,782 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-09-28T22:05:02,126 checking whether htscodecs files are present... yes 2023-09-28T22:05:02,128 configure: WARNING: GCS support not enabled: requires libcurl support 2023-09-28T22:05:02,129 configure: WARNING: S3 support not enabled: requires libcurl support 2023-09-28T22:05:02,357 checking for library containing regcomp... none required 2023-09-28T22:05:02,425 configure: creating ./config.status 2023-09-28T22:05:02,728 config.status: creating config.mk 2023-09-28T22:05:02,768 config.status: creating htslib.pc.tmp 2023-09-28T22:05:02,812 config.status: creating config.h 2023-09-28T22:05:02,844 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-09-28T22:05:03,029 [ 17%] Performing build step for 'htslib' 2023-09-28T22:05:07,041 Updating htscodecs/htscodecs/version.h : #define HTSCODECS_VERSION_TEXT "1.5.1" 2023-09-28T22:06:09,801 [ 20%] No install step for 'htslib' 2023-09-28T22:06:09,918 [ 22%] Completed 'htslib' 2023-09-28T22:06:10,075 [ 22%] Built target htslib 2023-09-28T22:06:10,175 [ 25%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-09-28T22:06:22,623 [ 28%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-09-28T22:06:27,262 [ 31%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-09-28T22:06:30,493 [ 34%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-09-28T22:06:35,244 [ 37%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-09-28T22:06:38,902 [ 40%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-09-28T22:06:41,000 [ 42%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-09-28T22:06:42,364 [ 45%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-09-28T22:06:43,351 [ 48%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-09-28T22:06:44,541 [ 51%] Linking CXX shared module /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so 2023-09-28T22:06:45,864 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-28T22:06:45,865 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-28T22:06:53,102 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-09-28T22:06:53,103 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GVec.hh:107:24: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-09-28T22:06:53,104 107 | fArray=new OBJ[NewCapacity]; 2023-09-28T22:06:53,104 | ^ 2023-09-28T22:06:53,105 /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-09-28T22:06:53,106 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-09-28T22:06:53,107 | ^ 2023-09-28T22:06:56,434 In member function ‘Push’, 2023-09-28T22:06:56,434 inlined from ‘fgetline’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.cpp:530:11, 2023-09-28T22:06:56,435 inlined from ‘start’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/tmerge.cpp:360:28, 2023-09-28T22:06:56,436 inlined from ‘splam_extract’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_extract.cpp:182:37: 2023-09-28T22:06:56,436 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-28T22:06:56,437 564 | GDynArray_ADD(item); 2023-09-28T22:06:56,438 | ^ 2023-09-28T22:06:56,438 In function ‘GRealloc’, 2023-09-28T22:06:56,439 inlined from ‘Clear’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:633:6, 2023-09-28T22:06:56,440 inlined from ‘growTo’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:577:28, 2023-09-28T22:06:56,440 inlined from ‘Grow’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:544:12, 2023-09-28T22:06:56,441 inlined from ‘Push’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:564:6, 2023-09-28T22:06:56,441 inlined from ‘fgetline’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.cpp:530:11, 2023-09-28T22:06:56,442 inlined from ‘start’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/tmerge.cpp:360:28, 2023-09-28T22:06:56,443 inlined from ‘splam_extract’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_extract.cpp:182:37: 2023-09-28T22:06:56,443 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:280:21: note: at offset -1 into destination object of size 16 allocated by ‘realloc’ 2023-09-28T22:06:56,444 280 | void *p=realloc(*ptr,size); 2023-09-28T22:06:56,444 | ^ 2023-09-28T22:06:56,445 In member function ‘Push’, 2023-09-28T22:06:56,445 inlined from ‘fgetline’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.cpp:530:11, 2023-09-28T22:06:56,446 inlined from ‘start’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/tmerge.cpp:360:28, 2023-09-28T22:06:56,446 inlined from ‘splam_extract’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_extract.cpp:182:37: 2023-09-28T22:06:56,447 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-28T22:06:56,447 564 | GDynArray_ADD(item); 2023-09-28T22:06:56,448 | ^ 2023-09-28T22:06:56,448 In function ‘GRealloc’, 2023-09-28T22:06:56,449 inlined from ‘Clear’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:633:6, 2023-09-28T22:06:56,449 inlined from ‘growTo’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:577:28, 2023-09-28T22:06:56,450 inlined from ‘Grow’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:544:12, 2023-09-28T22:06:56,450 inlined from ‘Push’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:564:6, 2023-09-28T22:06:56,451 inlined from ‘fgetline’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.cpp:530:11, 2023-09-28T22:06:56,451 inlined from ‘start’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/tmerge.cpp:360:28, 2023-09-28T22:06:56,452 inlined from ‘splam_extract’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_extract.cpp:182:37: 2023-09-28T22:06:56,452 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:272:20: note: at offset -1 into destination object of size 16 allocated by ‘malloc’ 2023-09-28T22:06:56,453 272 | void *p=malloc(size); 2023-09-28T22:06:56,453 | ^ 2023-09-28T22:07:08,290 [ 51%] Built target splam_extract 2023-09-28T22:07:08,393 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-09-28T22:07:14,628 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-09-28T22:07:14,629 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,630 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-28T22:07:14,630 | ^~~~~~~~~~ 2023-09-28T22:07:14,631 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,632 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-28T22:07:14,632 | ^~~~~~ 2023-09-28T22:07:14,633 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,634 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-28T22:07:14,635 | ^~~~ 2023-09-28T22:07:14,635 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,636 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-28T22:07:14,636 | ^~~~ 2023-09-28T22:07:14,637 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,637 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-28T22:07:14,637 | ^~~~~~~~~~ 2023-09-28T22:07:14,638 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,639 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-28T22:07:14,639 | ^~~~~~ 2023-09-28T22:07:14,640 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,641 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-28T22:07:14,642 | ^~~~ 2023-09-28T22:07:14,642 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,643 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-28T22:07:14,644 | ^~~~ 2023-09-28T22:07:14,644 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,645 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-28T22:07:14,646 | ^~~~~~~~~~ 2023-09-28T22:07:14,646 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,647 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-28T22:07:14,648 | ^~~~~~~ 2023-09-28T22:07:14,649 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,649 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-28T22:07:14,650 | ^~~~ 2023-09-28T22:07:14,650 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,651 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-28T22:07:14,651 | ^~~~ 2023-09-28T22:07:14,652 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,652 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-28T22:07:14,653 | ^~~~ 2023-09-28T22:07:14,653 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,654 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-28T22:07:14,655 | ^~~~~~~~~~ 2023-09-28T22:07:14,655 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,656 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-28T22:07:14,657 | ^~~~~~~ 2023-09-28T22:07:14,657 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,658 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-28T22:07:14,659 | ^~~~ 2023-09-28T22:07:14,659 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,660 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-28T22:07:14,661 | ^~~~ 2023-09-28T22:07:14,661 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:07:14,662 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-28T22:07:14,663 | ^~~~ 2023-09-28T22:07:20,704 [ 57%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-09-28T22:07:30,275 [ 60%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-09-28T22:07:30,833 [ 62%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-09-28T22:07:31,419 [ 65%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-09-28T22:07:31,750 [ 68%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-09-28T22:07:33,885 [ 71%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-09-28T22:07:37,185 [ 74%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-09-28T22:07:41,794 [ 77%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-09-28T22:07:47,138 [ 80%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-09-28T22:07:52,002 [ 82%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-09-28T22:07:56,752 [ 85%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-09-28T22:08:00,425 [ 88%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-09-28T22:08:02,523 [ 91%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-09-28T22:08:03,920 [ 94%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-09-28T22:08:04,909 [ 97%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-09-28T22:08:06,107 [100%] Linking CXX shared module /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so 2023-09-28T22:08:07,076 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-28T22:08:07,076 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-28T22:08:28,502 [100%] Built target splam_clean 2023-09-28T22:08:28,871 -- The C compiler identification is GNU 12.2.0 2023-09-28T22:08:29,223 -- The CXX compiler identification is GNU 12.2.0 2023-09-28T22:08:29,277 -- Detecting C compiler ABI info 2023-09-28T22:08:29,646 -- Detecting C compiler ABI info - done 2023-09-28T22:08:29,693 -- Check for working C compiler: /usr/bin/cc - skipped 2023-09-28T22:08:29,695 -- Detecting C compile features 2023-09-28T22:08:29,698 -- Detecting C compile features - done 2023-09-28T22:08:29,719 -- Detecting CXX compiler ABI info 2023-09-28T22:08:30,146 -- Detecting CXX compiler ABI info - done 2023-09-28T22:08:30,195 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-09-28T22:08:30,197 -- Detecting CXX compile features 2023-09-28T22:08:30,200 -- Detecting CXX compile features - done 2023-09-28T22:08:30,226 -- pybind11 v2.11.0 dev1 2023-09-28T22:08:30,308 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.6") 2023-09-28T22:08:30,388 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.11.so 2023-09-28T22:08:30,398 -- Performing Test HAS_FLTO 2023-09-28T22:08:31,042 -- Performing Test HAS_FLTO - Success 2023-09-28T22:08:31,091 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 2023-09-28T22:08:31,092 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/htslib 2023-09-28T22:08:31,093 LIBRARY_OUTPUT_DIRECTORY: 2023-09-28T22:08:31,181 EXAMPLE_VERSION_INFO: 1.0.8 2023-09-28T22:08:31,182 -- Configuring done 2023-09-28T22:08:31,274 -- Generating done 2023-09-28T22:08:31,290 -- Build files have been written to: /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/build/temp.linux-armv7l-cpython-311/splam_clean 2023-09-28T22:08:31,580 [ 2%] Creating directories for 'htslib' 2023-09-28T22:08:31,704 [ 5%] No download step for 'htslib' 2023-09-28T22:08:31,828 [ 8%] No update step for 'htslib' 2023-09-28T22:08:31,942 [ 11%] No patch step for 'htslib' 2023-09-28T22:08:32,058 [ 14%] Performing configure step for 'htslib' 2023-09-28T22:08:36,142 checking for gcc... gcc 2023-09-28T22:08:36,521 checking whether the C compiler works... yes 2023-09-28T22:08:36,522 checking for C compiler default output file name... a.out 2023-09-28T22:08:36,684 checking for suffix of executables... 2023-09-28T22:08:36,870 checking whether we are cross compiling... no 2023-09-28T22:08:36,954 checking for suffix of object files... o 2023-09-28T22:08:37,030 checking whether the compiler supports GNU C... yes 2023-09-28T22:08:37,103 checking whether gcc accepts -g... yes 2023-09-28T22:08:37,303 checking for gcc option to enable C11 features... none needed 2023-09-28T22:08:37,306 checking for ranlib... ranlib 2023-09-28T22:08:37,313 checking for grep that handles long lines and -e... /usr/bin/grep 2023-09-28T22:08:37,388 checking for C compiler warning flags... -Wall 2023-09-28T22:08:37,551 checking for gcc options needed to detect all undeclared functions... none needed 2023-09-28T22:08:37,636 checking for stdio.h... yes 2023-09-28T22:08:37,746 checking for stdlib.h... yes 2023-09-28T22:08:37,862 checking for string.h... yes 2023-09-28T22:08:37,988 checking for inttypes.h... yes 2023-09-28T22:08:38,134 checking for stdint.h... yes 2023-09-28T22:08:38,254 checking for strings.h... yes 2023-09-28T22:08:38,376 checking for sys/stat.h... yes 2023-09-28T22:08:38,496 checking for sys/types.h... yes 2023-09-28T22:08:38,628 checking for unistd.h... yes 2023-09-28T22:08:38,784 checking for sys/param.h... yes 2023-09-28T22:08:38,982 checking whether _XOPEN_SOURCE is declared... no 2023-09-28T22:08:39,153 checking C compiler flags needed for ssse3... none 2023-09-28T22:08:39,325 checking C compiler flags needed for popcnt... none 2023-09-28T22:08:39,501 checking C compiler flags needed for sse4.1... none 2023-09-28T22:08:39,699 checking C compiler flags needed for avx2... none 2023-09-28T22:08:39,871 checking C compiler flags needed for avx512f... none 2023-09-28T22:08:39,875 checking for pkg-config... /usr/bin/pkg-config 2023-09-28T22:08:39,880 checking pkg-config is at least version 0.9.0... yes 2023-09-28T22:08:39,882 checking for special C compiler options needed for large files... no 2023-09-28T22:08:40,058 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-09-28T22:08:40,071 checking shared library type for unknown-Linux... plain .so 2023-09-28T22:08:40,243 checking whether the linker supports versioned symbols... yes 2023-09-28T22:08:40,426 checking whether the compiler accepts -fvisibility=hidden... yes 2023-09-28T22:08:40,701 checking build system type... armv7l-unknown-linux-gnueabihf 2023-09-28T22:08:40,703 checking host system type... armv7l-unknown-linux-gnueabihf 2023-09-28T22:08:40,886 checking for getpagesize... yes 2023-09-28T22:08:41,214 checking for working mmap... yes 2023-09-28T22:08:41,399 checking for gmtime_r... yes 2023-09-28T22:08:41,581 checking for fsync... yes 2023-09-28T22:08:41,765 checking for drand48... yes 2023-09-28T22:08:41,970 checking for srand48_deterministic... no 2023-09-28T22:08:42,160 checking whether fdatasync is declared... yes 2023-09-28T22:08:42,342 checking for fdatasync... yes 2023-09-28T22:08:42,737 checking for library containing log... -lm 2023-09-28T22:08:42,854 checking for zlib.h... yes 2023-09-28T22:08:43,058 checking for inflate in -lz... yes 2023-09-28T22:08:43,239 checking for library containing recv... none required 2023-09-28T22:08:43,323 checking for bzlib.h... yes 2023-09-28T22:08:43,502 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-09-28T22:08:43,598 checking whether htscodecs files are present... yes 2023-09-28T22:08:43,599 configure: WARNING: GCS support not enabled: requires libcurl support 2023-09-28T22:08:43,600 configure: WARNING: S3 support not enabled: requires libcurl support 2023-09-28T22:08:43,818 checking for library containing regcomp... none required 2023-09-28T22:08:43,884 configure: creating ./config.status 2023-09-28T22:08:44,171 config.status: creating config.mk 2023-09-28T22:08:44,210 config.status: creating htslib.pc.tmp 2023-09-28T22:08:44,254 config.status: creating config.h 2023-09-28T22:08:44,273 config.status: config.h is unchanged 2023-09-28T22:08:44,278 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-09-28T22:08:44,455 [ 17%] Performing build step for 'htslib' 2023-09-28T22:08:44,940 [ 20%] No install step for 'htslib' 2023-09-28T22:08:45,059 [ 22%] Completed 'htslib' 2023-09-28T22:08:45,215 [ 22%] Built target htslib 2023-09-28T22:08:45,313 [ 25%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-09-28T22:08:57,491 [ 28%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-09-28T22:09:02,093 [ 31%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-09-28T22:09:05,330 [ 34%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-09-28T22:09:10,124 [ 37%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-09-28T22:09:13,779 [ 40%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-09-28T22:09:15,865 [ 42%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-09-28T22:09:17,229 [ 45%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-09-28T22:09:18,217 [ 48%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-09-28T22:09:19,414 [ 51%] Linking CXX shared module /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so 2023-09-28T22:09:20,726 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-28T22:09:20,727 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-28T22:09:27,903 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-09-28T22:09:27,904 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GVec.hh:107:24: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-09-28T22:09:27,905 107 | fArray=new OBJ[NewCapacity]; 2023-09-28T22:09:27,906 | ^ 2023-09-28T22:09:27,906 /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-09-28T22:09:27,907 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-09-28T22:09:27,907 | ^ 2023-09-28T22:09:31,231 In member function ‘Push’, 2023-09-28T22:09:31,232 inlined from ‘fgetline’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.cpp:530:11, 2023-09-28T22:09:31,232 inlined from ‘start’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/tmerge.cpp:360:28, 2023-09-28T22:09:31,233 inlined from ‘splam_extract’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_extract.cpp:182:37: 2023-09-28T22:09:31,234 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-28T22:09:31,234 564 | GDynArray_ADD(item); 2023-09-28T22:09:31,235 | ^ 2023-09-28T22:09:31,236 In function ‘GRealloc’, 2023-09-28T22:09:31,236 inlined from ‘Clear’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:633:6, 2023-09-28T22:09:31,237 inlined from ‘growTo’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:577:28, 2023-09-28T22:09:31,237 inlined from ‘Grow’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:544:12, 2023-09-28T22:09:31,238 inlined from ‘Push’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:564:6, 2023-09-28T22:09:31,238 inlined from ‘fgetline’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.cpp:530:11, 2023-09-28T22:09:31,239 inlined from ‘start’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/tmerge.cpp:360:28, 2023-09-28T22:09:31,239 inlined from ‘splam_extract’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_extract.cpp:182:37: 2023-09-28T22:09:31,240 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:280:21: note: at offset -1 into destination object of size 16 allocated by ‘realloc’ 2023-09-28T22:09:31,240 280 | void *p=realloc(*ptr,size); 2023-09-28T22:09:31,241 | ^ 2023-09-28T22:09:31,241 In member function ‘Push’, 2023-09-28T22:09:31,242 inlined from ‘fgetline’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.cpp:530:11, 2023-09-28T22:09:31,243 inlined from ‘start’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/tmerge.cpp:360:28, 2023-09-28T22:09:31,243 inlined from ‘splam_extract’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_extract.cpp:182:37: 2023-09-28T22:09:31,244 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2023-09-28T22:09:31,245 564 | GDynArray_ADD(item); 2023-09-28T22:09:31,245 | ^ 2023-09-28T22:09:31,246 In function ‘GRealloc’, 2023-09-28T22:09:31,247 inlined from ‘Clear’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:633:6, 2023-09-28T22:09:31,248 inlined from ‘growTo’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:577:28, 2023-09-28T22:09:31,248 inlined from ‘Grow’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:544:12, 2023-09-28T22:09:31,249 inlined from ‘Push’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:564:6, 2023-09-28T22:09:31,249 inlined from ‘fgetline’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.cpp:530:11, 2023-09-28T22:09:31,250 inlined from ‘start’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/tmerge.cpp:360:28, 2023-09-28T22:09:31,250 inlined from ‘splam_extract’ at /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_extract.cpp:182:37: 2023-09-28T22:09:31,251 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/include/gclib/GBase.h:272:20: note: at offset -1 into destination object of size 16 allocated by ‘malloc’ 2023-09-28T22:09:31,252 272 | void *p=malloc(size); 2023-09-28T22:09:31,252 | ^ 2023-09-28T22:09:43,023 [ 51%] Built target splam_extract 2023-09-28T22:09:43,154 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-09-28T22:09:49,328 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-09-28T22:09:49,328 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,329 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-28T22:09:49,329 | ^~~~~~~~~~ 2023-09-28T22:09:49,330 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,331 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-28T22:09:49,331 | ^~~~~~ 2023-09-28T22:09:49,332 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,332 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-28T22:09:49,333 | ^~~~ 2023-09-28T22:09:49,333 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,334 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-09-28T22:09:49,335 | ^~~~ 2023-09-28T22:09:49,336 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,336 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-28T22:09:49,337 | ^~~~~~~~~~ 2023-09-28T22:09:49,338 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,339 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-28T22:09:49,339 | ^~~~~~ 2023-09-28T22:09:49,340 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,341 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-28T22:09:49,341 | ^~~~ 2023-09-28T22:09:49,342 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,343 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-09-28T22:09:49,344 | ^~~~ 2023-09-28T22:09:49,345 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,345 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-28T22:09:49,346 | ^~~~~~~~~~ 2023-09-28T22:09:49,346 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,347 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-28T22:09:49,348 | ^~~~~~~ 2023-09-28T22:09:49,348 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,349 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-28T22:09:49,349 | ^~~~ 2023-09-28T22:09:49,350 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,351 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-28T22:09:49,352 | ^~~~ 2023-09-28T22:09:49,352 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,353 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-09-28T22:09:49,354 | ^~~~ 2023-09-28T22:09:49,355 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,356 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-28T22:09:49,357 | ^~~~~~~~~~ 2023-09-28T22:09:49,357 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,358 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-28T22:09:49,359 | ^~~~~~~ 2023-09-28T22:09:49,360 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,361 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-28T22:09:49,361 | ^~~~ 2023-09-28T22:09:49,362 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,362 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-28T22:09:49,363 | ^~~~ 2023-09-28T22:09:49,363 /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-28T22:09:49,364 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-09-28T22:09:49,365 | ^~~~ 2023-09-28T22:09:55,364 [ 57%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-09-28T22:10:04,946 [ 60%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-09-28T22:10:05,506 [ 62%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-09-28T22:10:06,092 [ 65%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-09-28T22:10:06,428 [ 68%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-09-28T22:10:08,600 [ 71%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-09-28T22:10:11,816 [ 74%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-09-28T22:10:16,438 [ 77%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-09-28T22:10:21,790 [ 80%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-09-28T22:10:26,610 [ 82%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-09-28T22:10:31,397 [ 85%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-09-28T22:10:35,060 [ 88%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-09-28T22:10:37,146 [ 91%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-09-28T22:10:38,506 [ 94%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-09-28T22:10:39,496 [ 97%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-09-28T22:10:40,690 [100%] Linking CXX shared module /tmp/pip-wheel-e0g0xeux/splam_8dfe550e24b64a9b83c2584bdb14bc9a/build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so 2023-09-28T22:10:41,657 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2023-09-28T22:10:41,658 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2023-09-28T22:11:03,021 [100%] Built target splam_clean 2023-09-28T22:11:03,115 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-28T22:11:03,116 !! 2023-09-28T22:11:03,117 ******************************************************************************** 2023-09-28T22:11:03,118 Please avoid running ``setup.py`` directly. 2023-09-28T22:11:03,118 Instead, use pypa/build, pypa/installer or other 2023-09-28T22:11:03,118 standards-based tools. 2023-09-28T22:11:03,119 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-28T22:11:03,120 ******************************************************************************** 2023-09-28T22:11:03,121 !! 2023-09-28T22:11:03,121 self.initialize_options() 2023-09-28T22:11:03,140 installing to build/bdist.linux-armv7l/wheel 2023-09-28T22:11:03,140 running install 2023-09-28T22:11:03,164 running install_lib 2023-09-28T22:11:03,188 creating build/bdist.linux-armv7l 2023-09-28T22:11:03,189 creating build/bdist.linux-armv7l/wheel 2023-09-28T22:11:03,190 copying build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-09-28T22:11:03,212 creating build/bdist.linux-armv7l/wheel/splam 2023-09-28T22:11:03,213 copying build/lib.linux-armv7l-cpython-311/splam/parse.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-28T22:11:03,215 copying build/lib.linux-armv7l-cpython-311/splam/header.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-28T22:11:03,217 copying build/lib.linux-armv7l-cpython-311/splam/__init__.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-28T22:11:03,219 copying build/lib.linux-armv7l-cpython-311/splam/main.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-28T22:11:03,222 copying build/lib.linux-armv7l-cpython-311/splam/clean_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-28T22:11:03,224 copying build/lib.linux-armv7l-cpython-311/splam/extract_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-28T22:11:03,226 copying build/lib.linux-armv7l-cpython-311/splam/SPLAM.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-28T22:11:03,228 copying build/lib.linux-armv7l-cpython-311/splam/prediction.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-28T22:11:03,231 copying build/lib.linux-armv7l-cpython-311/splam/chr_size.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-28T22:11:03,234 copying build/lib.linux-armv7l-cpython-311/splam/config.py -> build/bdist.linux-armv7l/wheel/splam 2023-09-28T22:11:03,236 copying build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-09-28T22:11:03,256 running install_egg_info 2023-09-28T22:11:03,317 running egg_info 2023-09-28T22:11:03,344 writing splam.egg-info/PKG-INFO 2023-09-28T22:11:03,348 writing dependency_links to splam.egg-info/dependency_links.txt 2023-09-28T22:11:03,350 writing entry points to splam.egg-info/entry_points.txt 2023-09-28T22:11:03,352 writing requirements to splam.egg-info/requires.txt 2023-09-28T22:11:03,354 writing top-level names to splam.egg-info/top_level.txt 2023-09-28T22:11:03,383 reading manifest file 'splam.egg-info/SOURCES.txt' 2023-09-28T22:11:03,683 reading manifest template 'MANIFEST.in' 2023-09-28T22:11:04,012 adding license file 'LICENSE' 2023-09-28T22:11:04,082 writing manifest file 'splam.egg-info/SOURCES.txt' 2023-09-28T22:11:04,086 Copying splam.egg-info to build/bdist.linux-armv7l/wheel/splam-1.0.8-py3.11.egg-info 2023-09-28T22:11:04,099 running install_scripts 2023-09-28T22:11:04,154 creating build/bdist.linux-armv7l/wheel/splam-1.0.8.dist-info/WHEEL 2023-09-28T22:11:04,156 creating '/tmp/pip-wheel-2sf8wem6/splam-1.0.8-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-28T22:11:04,439 adding 'splam_clean.cpython-311-arm-linux-gnueabihf.so' 2023-09-28T22:11:04,706 adding 'splam_extract.cpython-311-arm-linux-gnueabihf.so' 2023-09-28T22:11:04,718 adding 'splam/SPLAM.py' 2023-09-28T22:11:04,719 adding 'splam/__init__.py' 2023-09-28T22:11:04,725 adding 'splam/chr_size.py' 2023-09-28T22:11:04,727 adding 'splam/clean_gff.py' 2023-09-28T22:11:04,728 adding 'splam/config.py' 2023-09-28T22:11:04,730 adding 'splam/extract_gff.py' 2023-09-28T22:11:04,731 adding 'splam/header.py' 2023-09-28T22:11:04,733 adding 'splam/main.py' 2023-09-28T22:11:04,735 adding 'splam/parse.py' 2023-09-28T22:11:04,737 adding 'splam/prediction.py' 2023-09-28T22:11:04,739 adding 'splam-1.0.8.dist-info/LICENSE' 2023-09-28T22:11:04,741 adding 'splam-1.0.8.dist-info/METADATA' 2023-09-28T22:11:04,742 adding 'splam-1.0.8.dist-info/WHEEL' 2023-09-28T22:11:04,742 adding 'splam-1.0.8.dist-info/entry_points.txt' 2023-09-28T22:11:04,743 adding 'splam-1.0.8.dist-info/top_level.txt' 2023-09-28T22:11:04,744 adding 'splam-1.0.8.dist-info/RECORD' 2023-09-28T22:11:04,757 removing build/bdist.linux-armv7l/wheel 2023-09-28T22:11:04,875 Building wheel for splam (setup.py): finished with status 'done' 2023-09-28T22:11:04,889 Created wheel for splam: filename=splam-1.0.8-cp311-cp311-linux_armv7l.whl size=925701 sha256=92c821abb80e7e7f7d5533c45323e8318dd814e889ce11dce05f867bd3e4dde6 2023-09-28T22:11:04,890 Stored in directory: /tmp/pip-ephem-wheel-cache-_nbamsmo/wheels/08/d1/d4/6fcf1303b7ee481e4c766c31105731b75950da523c05aca03c 2023-09-28T22:11:04,902 Successfully built splam 2023-09-28T22:11:04,938 Removed build tracker: '/tmp/pip-build-tracker-lxrgc_r4'