2023-09-29T07:41:08,962 Created temporary directory: /tmp/pip-build-tracker-9s_bw453
2023-09-29T07:41:08,963 Initialized build tracking at /tmp/pip-build-tracker-9s_bw453
2023-09-29T07:41:08,964 Created build tracker: /tmp/pip-build-tracker-9s_bw453
2023-09-29T07:41:08,964 Entered build tracker: /tmp/pip-build-tracker-9s_bw453
2023-09-29T07:41:08,965 Created temporary directory: /tmp/pip-wheel-sdc_hl0x
2023-09-29T07:41:08,968 Created temporary directory: /tmp/pip-ephem-wheel-cache-nzwqq4zq
2023-09-29T07:41:08,989 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-29T07:41:08,993 2 location(s) to search for versions of nuklear:
2023-09-29T07:41:08,993 * https://pypi.org/simple/nuklear/
2023-09-29T07:41:08,993 * https://www.piwheels.org/simple/nuklear/
2023-09-29T07:41:08,994 Fetching project page and analyzing links: https://pypi.org/simple/nuklear/
2023-09-29T07:41:08,995 Getting page https://pypi.org/simple/nuklear/
2023-09-29T07:41:08,996 Found index url https://pypi.org/simple/
2023-09-29T07:41:09,223 Fetched page https://pypi.org/simple/nuklear/ as application/vnd.pypi.simple.v1+json
2023-09-29T07:41:09,224   Skipping link: No binaries permitted for nuklear: https://files.pythonhosted.org/packages/ad/3d/c0dae456e7f691d5a57cea45e86791f9eeb037a663215e4c2abc8492c93e/nuklear-0.0.1-py3-none-any.whl (from https://pypi.org/simple/nuklear/)
2023-09-29T07:41:09,225   Found link https://files.pythonhosted.org/packages/24/fa/e4ab8ace9fe087bf579e0b79a51da4378b8b64a576ddaacf4efd48f5e305/nuklear-0.0.1.tar.gz (from https://pypi.org/simple/nuklear/), version: 0.0.1
2023-09-29T07:41:09,226 Fetching project page and analyzing links: https://www.piwheels.org/simple/nuklear/
2023-09-29T07:41:09,226 Getting page https://www.piwheels.org/simple/nuklear/
2023-09-29T07:41:09,228 Found index url https://www.piwheels.org/simple/
2023-09-29T07:41:09,386 Fetched page https://www.piwheels.org/simple/nuklear/ as text/html
2023-09-29T07:41:09,387 Skipping link: not a file: https://www.piwheels.org/simple/nuklear/
2023-09-29T07:41:09,388 Skipping link: not a file: https://pypi.org/simple/nuklear/
2023-09-29T07:41:09,406 Given no hashes to check 1 links for project 'nuklear': discarding no candidates
2023-09-29T07:41:09,424 Collecting nuklear==0.0.1
2023-09-29T07:41:09,427   Created temporary directory: /tmp/pip-unpack-l_rv0vkb
2023-09-29T07:41:09,683   Downloading nuklear-0.0.1.tar.gz (1.7 MB)
2023-09-29T07:41:10,397   Added nuklear==0.0.1 from https://files.pythonhosted.org/packages/24/fa/e4ab8ace9fe087bf579e0b79a51da4378b8b64a576ddaacf4efd48f5e305/nuklear-0.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-9s_bw453'
2023-09-29T07:41:10,402   Created temporary directory: /tmp/pip-build-env-1asuo88q
2023-09-29T07:41:10,406   Installing build dependencies: started
2023-09-29T07:41:10,407   Running command pip subprocess to install build dependencies
2023-09-29T07:41:11,527   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-09-29T07:41:12,016   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-29T07:41:13,597   Collecting setuptools>=46.1.0
2023-09-29T07:41:13,666     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-09-29T07:41:13,989   Collecting setuptools_scm[toml]>=5
2023-09-29T07:41:13,990     Obtaining dependency information for setuptools_scm[toml]>=5 from https://files.pythonhosted.org/packages/ca/04/4ea91c627355ae6d976bf7f1fc2815372a96b1b87bf290c8d726d10a08a1/setuptools_scm-8.0.3-py3-none-any.whl.metadata
2023-09-29T07:41:13,995     Using cached setuptools_scm-8.0.3-py3-none-any.whl.metadata (6.1 kB)
2023-09-29T07:41:14,335   Collecting packaging>=20 (from setuptools_scm[toml]>=5)
2023-09-29T07:41:14,350     Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB)
2023-09-29T07:41:14,407   Using cached setuptools_scm-8.0.3-py3-none-any.whl (41 kB)
2023-09-29T07:41:16,868   Installing collected packages: setuptools, packaging, setuptools_scm
2023-09-29T07:41:19,357   Successfully installed packaging-23.1 setuptools-68.2.2 setuptools_scm-8.0.3
2023-09-29T07:41:19,933   Installing build dependencies: finished with status 'done'
2023-09-29T07:41:19,937   Getting requirements to build wheel: started
2023-09-29T07:41:19,938   Running command Getting requirements to build wheel
2023-09-29T07:41:20,619   running egg_info
2023-09-29T07:41:20,624   writing src/nuklear.egg-info/PKG-INFO
2023-09-29T07:41:20,628   writing dependency_links to src/nuklear.egg-info/dependency_links.txt
2023-09-29T07:41:20,630   writing entry points to src/nuklear.egg-info/entry_points.txt
2023-09-29T07:41:20,632   writing requirements to src/nuklear.egg-info/requires.txt
2023-09-29T07:41:20,633   writing top-level names to src/nuklear.egg-info/top_level.txt
2023-09-29T07:41:20,674   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2023-09-29T07:41:20,677   reading manifest file 'src/nuklear.egg-info/SOURCES.txt'
2023-09-29T07:41:20,682   adding license file 'LICENSE.txt'
2023-09-29T07:41:20,686   writing manifest file 'src/nuklear.egg-info/SOURCES.txt'
2023-09-29T07:41:20,767   Getting requirements to build wheel: finished with status 'done'
2023-09-29T07:41:20,777   Installing backend dependencies: started
2023-09-29T07:41:20,778   Running command pip subprocess to install backend dependencies
2023-09-29T07:41:21,915   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-09-29T07:41:22,405   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-29T07:41:22,911   Collecting wheel
2023-09-29T07:41:22,927     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-09-29T07:41:25,952   Installing collected packages: wheel
2023-09-29T07:41:26,175     Creating /tmp/pip-build-env-1asuo88q/normal/local/bin
2023-09-29T07:41:26,177     changing mode of /tmp/pip-build-env-1asuo88q/normal/local/bin/wheel to 755
2023-09-29T07:41:26,189   Successfully installed wheel-0.41.2
2023-09-29T07:41:26,711   Installing backend dependencies: finished with status 'done'
2023-09-29T07:41:26,713   Created temporary directory: /tmp/pip-modern-metadata-2o3wt_t6
2023-09-29T07:41:26,715   Preparing metadata (pyproject.toml): started
2023-09-29T07:41:26,717   Running command Preparing metadata (pyproject.toml)
2023-09-29T07:41:27,315   running dist_info
2023-09-29T07:41:27,335   creating /tmp/pip-modern-metadata-2o3wt_t6/nuklear.egg-info
2023-09-29T07:41:27,340   writing /tmp/pip-modern-metadata-2o3wt_t6/nuklear.egg-info/PKG-INFO
2023-09-29T07:41:27,345   writing dependency_links to /tmp/pip-modern-metadata-2o3wt_t6/nuklear.egg-info/dependency_links.txt
2023-09-29T07:41:27,347   writing entry points to /tmp/pip-modern-metadata-2o3wt_t6/nuklear.egg-info/entry_points.txt
2023-09-29T07:41:27,349   writing requirements to /tmp/pip-modern-metadata-2o3wt_t6/nuklear.egg-info/requires.txt
2023-09-29T07:41:27,350   writing top-level names to /tmp/pip-modern-metadata-2o3wt_t6/nuklear.egg-info/top_level.txt
2023-09-29T07:41:27,351   writing manifest file '/tmp/pip-modern-metadata-2o3wt_t6/nuklear.egg-info/SOURCES.txt'
2023-09-29T07:41:27,391   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2023-09-29T07:41:27,395   reading manifest file '/tmp/pip-modern-metadata-2o3wt_t6/nuklear.egg-info/SOURCES.txt'
2023-09-29T07:41:27,397   adding license file 'LICENSE.txt'
2023-09-29T07:41:27,399   writing manifest file '/tmp/pip-modern-metadata-2o3wt_t6/nuklear.egg-info/SOURCES.txt'
2023-09-29T07:41:27,400   creating '/tmp/pip-modern-metadata-2o3wt_t6/nuklear-0.0.1.dist-info'
2023-09-29T07:41:27,581   Preparing metadata (pyproject.toml): finished with status 'done'
2023-09-29T07:41:27,585   Source in /tmp/pip-wheel-sdc_hl0x/nuklear_e1118eb1c99c4444b0db924595da7fed has version 0.0.1, which satisfies requirement nuklear==0.0.1 from https://files.pythonhosted.org/packages/24/fa/e4ab8ace9fe087bf579e0b79a51da4378b8b64a576ddaacf4efd48f5e305/nuklear-0.0.1.tar.gz
2023-09-29T07:41:27,586   Removed nuklear==0.0.1 from https://files.pythonhosted.org/packages/24/fa/e4ab8ace9fe087bf579e0b79a51da4378b8b64a576ddaacf4efd48f5e305/nuklear-0.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-9s_bw453'
2023-09-29T07:41:27,590 Created temporary directory: /tmp/pip-unpack-ta70n7l0
2023-09-29T07:41:27,591 Created temporary directory: /tmp/pip-unpack-p3ln5uy1
2023-09-29T07:41:27,604 Building wheels for collected packages: nuklear
2023-09-29T07:41:27,608   Created temporary directory: /tmp/pip-wheel-g19t2shu
2023-09-29T07:41:27,609   Destination directory: /tmp/pip-wheel-g19t2shu
2023-09-29T07:41:27,611   Building wheel for nuklear (pyproject.toml): started
2023-09-29T07:41:27,612   Running command Building wheel for nuklear (pyproject.toml)
2023-09-29T07:41:28,227   running bdist_wheel
2023-09-29T07:41:28,277   running build
2023-09-29T07:41:28,278   running build_py
2023-09-29T07:41:28,286   creating build
2023-09-29T07:41:28,287   creating build/lib
2023-09-29T07:41:28,287   creating build/lib/nuclear
2023-09-29T07:41:28,289   copying src/nuclear/nuclear.py -> build/lib/nuclear
2023-09-29T07:41:28,290   copying src/nuclear/__init__.py -> build/lib/nuclear
2023-09-29T07:41:28,292   copying src/nuclear/hotspots.py -> build/lib/nuclear
2023-09-29T07:41:28,295   copying src/nuclear/oligogen.py -> build/lib/nuclear
2023-09-29T07:41:28,297   copying src/nuclear/bitmatrix.py -> build/lib/nuclear
2023-09-29T07:41:28,299   copying src/nuclear/skeleton.py -> build/lib/nuclear
2023-09-29T07:41:28,301   copying src/nuclear/confread.py -> build/lib/nuclear
2023-09-29T07:41:28,304   copying src/nuclear/minimizer.py -> build/lib/nuclear
2023-09-29T07:41:28,306   copying src/nuclear/sampling.py -> build/lib/nuclear
2023-09-29T07:41:28,309   running egg_info
2023-09-29T07:41:28,315   writing src/nuklear.egg-info/PKG-INFO
2023-09-29T07:41:28,319   writing dependency_links to src/nuklear.egg-info/dependency_links.txt
2023-09-29T07:41:28,320   writing entry points to src/nuklear.egg-info/entry_points.txt
2023-09-29T07:41:28,322   writing requirements to src/nuklear.egg-info/requires.txt
2023-09-29T07:41:28,323   writing top-level names to src/nuklear.egg-info/top_level.txt
2023-09-29T07:41:28,351   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2023-09-29T07:41:28,354   reading manifest file 'src/nuklear.egg-info/SOURCES.txt'
2023-09-29T07:41:28,361   adding license file 'LICENSE.txt'
2023-09-29T07:41:28,364   writing manifest file 'src/nuklear.egg-info/SOURCES.txt'
2023-09-29T07:41:28,367   creating build/lib/nuclear_toppar
2023-09-29T07:41:28,368   copying src/nuclear_toppar/par_all27_prot_na_scal3.prm -> build/lib/nuclear_toppar
2023-09-29T07:41:28,375   copying src/nuclear_toppar/par_all36_carb.prm -> build/lib/nuclear_toppar
2023-09-29T07:41:28,381   copying src/nuclear_toppar/par_all36_cgenff.prm -> build/lib/nuclear_toppar
2023-09-29T07:41:28,391   copying src/nuclear_toppar/par_all36_na.prm -> build/lib/nuclear_toppar
2023-09-29T07:41:28,395   copying src/nuclear_toppar/par_all36_prot.prm -> build/lib/nuclear_toppar
2023-09-29T07:41:28,400   copying src/nuclear_toppar/top_all27_prot_na_scal3.rtf -> build/lib/nuclear_toppar
2023-09-29T07:41:28,409   copying src/nuclear_toppar/top_all36_carb.rtf -> build/lib/nuclear_toppar
2023-09-29T07:41:28,415   copying src/nuclear_toppar/top_all36_cgenff.rtf -> build/lib/nuclear_toppar
2023-09-29T07:41:28,440   copying src/nuclear_toppar/top_all36_na.rtf -> build/lib/nuclear_toppar
2023-09-29T07:41:28,443   copying src/nuclear_toppar/top_all36_prot.rtf -> build/lib/nuclear_toppar
2023-09-29T07:41:28,446   copying src/nuclear_toppar/toppar_all36_na_model.str -> build/lib/nuclear_toppar
2023-09-29T07:41:28,451   copying src/nuclear_toppar/toppar_all36_na_modifications.str -> build/lib/nuclear_toppar
2023-09-29T07:41:28,456   copying src/nuclear_toppar/toppar_all36_na_rna_modified.str -> build/lib/nuclear_toppar
2023-09-29T07:41:28,478   copying src/nuclear_toppar/toppar_water_ions.str -> build/lib/nuclear_toppar
2023-09-29T07:41:28,493   installing to build/bdist.linux-armv7l/wheel
2023-09-29T07:41:28,493   running install
2023-09-29T07:41:28,517   running install_lib
2023-09-29T07:41:28,524   creating build/bdist.linux-armv7l
2023-09-29T07:41:28,524   creating build/bdist.linux-armv7l/wheel
2023-09-29T07:41:28,526   creating build/bdist.linux-armv7l/wheel/nuclear
2023-09-29T07:41:28,527   copying build/lib/nuclear/nuclear.py -> build/bdist.linux-armv7l/wheel/nuclear
2023-09-29T07:41:28,529   copying build/lib/nuclear/__init__.py -> build/bdist.linux-armv7l/wheel/nuclear
2023-09-29T07:41:28,530   copying build/lib/nuclear/hotspots.py -> build/bdist.linux-armv7l/wheel/nuclear
2023-09-29T07:41:28,533   copying build/lib/nuclear/oligogen.py -> build/bdist.linux-armv7l/wheel/nuclear
2023-09-29T07:41:28,535   copying build/lib/nuclear/bitmatrix.py -> build/bdist.linux-armv7l/wheel/nuclear
2023-09-29T07:41:28,537   copying build/lib/nuclear/skeleton.py -> build/bdist.linux-armv7l/wheel/nuclear
2023-09-29T07:41:28,539   copying build/lib/nuclear/confread.py -> build/bdist.linux-armv7l/wheel/nuclear
2023-09-29T07:41:28,541   copying build/lib/nuclear/minimizer.py -> build/bdist.linux-armv7l/wheel/nuclear
2023-09-29T07:41:28,543   copying build/lib/nuclear/sampling.py -> build/bdist.linux-armv7l/wheel/nuclear
2023-09-29T07:41:28,546   creating build/bdist.linux-armv7l/wheel/nuclear_toppar
2023-09-29T07:41:28,546   copying build/lib/nuclear_toppar/par_all27_prot_na_scal3.prm -> build/bdist.linux-armv7l/wheel/nuclear_toppar
2023-09-29T07:41:28,552   copying build/lib/nuclear_toppar/toppar_all36_na_rna_modified.str -> build/bdist.linux-armv7l/wheel/nuclear_toppar
2023-09-29T07:41:28,574   copying build/lib/nuclear_toppar/toppar_water_ions.str -> build/bdist.linux-armv7l/wheel/nuclear_toppar
2023-09-29T07:41:28,577   copying build/lib/nuclear_toppar/top_all36_na.rtf -> build/bdist.linux-armv7l/wheel/nuclear_toppar
2023-09-29T07:41:28,580   copying build/lib/nuclear_toppar/toppar_all36_na_modifications.str -> build/bdist.linux-armv7l/wheel/nuclear_toppar
2023-09-29T07:41:28,585   copying build/lib/nuclear_toppar/par_all36_prot.prm -> build/bdist.linux-armv7l/wheel/nuclear_toppar
2023-09-29T07:41:28,590   copying build/lib/nuclear_toppar/top_all36_prot.rtf -> build/bdist.linux-armv7l/wheel/nuclear_toppar
2023-09-29T07:41:28,594   copying build/lib/nuclear_toppar/par_all36_cgenff.prm -> build/bdist.linux-armv7l/wheel/nuclear_toppar
2023-09-29T07:41:28,605   copying build/lib/nuclear_toppar/top_all27_prot_na_scal3.rtf -> build/bdist.linux-armv7l/wheel/nuclear_toppar
2023-09-29T07:41:28,614   copying build/lib/nuclear_toppar/par_all36_carb.prm -> build/bdist.linux-armv7l/wheel/nuclear_toppar
2023-09-29T07:41:28,619   copying build/lib/nuclear_toppar/top_all36_carb.rtf -> build/bdist.linux-armv7l/wheel/nuclear_toppar
2023-09-29T07:41:28,628   copying build/lib/nuclear_toppar/top_all36_cgenff.rtf -> build/bdist.linux-armv7l/wheel/nuclear_toppar
2023-09-29T07:41:28,657   copying build/lib/nuclear_toppar/toppar_all36_na_model.str -> build/bdist.linux-armv7l/wheel/nuclear_toppar
2023-09-29T07:41:28,662   copying build/lib/nuclear_toppar/par_all36_na.prm -> build/bdist.linux-armv7l/wheel/nuclear_toppar
2023-09-29T07:41:28,665   running install_egg_info
2023-09-29T07:41:28,673   Copying src/nuklear.egg-info to build/bdist.linux-armv7l/wheel/nuklear-0.0.1-py3.11.egg-info
2023-09-29T07:41:28,685   running install_scripts
2023-09-29T07:41:28,699   creating build/bdist.linux-armv7l/wheel/nuklear-0.0.1.dist-info/WHEEL
2023-09-29T07:41:28,701   creating '/tmp/pip-wheel-g19t2shu/.tmp-hw1q0176/nuklear-0.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-29T07:41:28,703   adding 'nuclear/__init__.py'
2023-09-29T07:41:28,705   adding 'nuclear/bitmatrix.py'
2023-09-29T07:41:28,707   adding 'nuclear/confread.py'
2023-09-29T07:41:28,710   adding 'nuclear/hotspots.py'
2023-09-29T07:41:28,712   adding 'nuclear/minimizer.py'
2023-09-29T07:41:28,713   adding 'nuclear/nuclear.py'
2023-09-29T07:41:28,715   adding 'nuclear/oligogen.py'
2023-09-29T07:41:28,718   adding 'nuclear/sampling.py'
2023-09-29T07:41:28,720   adding 'nuclear/skeleton.py'
2023-09-29T07:41:28,739   adding 'nuclear_toppar/par_all27_prot_na_scal3.prm'
2023-09-29T07:41:28,757   adding 'nuclear_toppar/par_all36_carb.prm'
2023-09-29T07:41:28,809   adding 'nuclear_toppar/par_all36_cgenff.prm'
2023-09-29T07:41:28,821   adding 'nuclear_toppar/par_all36_na.prm'
2023-09-29T07:41:28,836   adding 'nuclear_toppar/par_all36_prot.prm'
2023-09-29T07:41:28,875   adding 'nuclear_toppar/top_all27_prot_na_scal3.rtf'
2023-09-29T07:41:28,904   adding 'nuclear_toppar/top_all36_carb.rtf'
2023-09-29T07:41:29,067   adding 'nuclear_toppar/top_all36_cgenff.rtf'
2023-09-29T07:41:29,083   adding 'nuclear_toppar/top_all36_na.rtf'
2023-09-29T07:41:29,092   adding 'nuclear_toppar/top_all36_prot.rtf'
2023-09-29T07:41:29,105   adding 'nuclear_toppar/toppar_all36_na_model.str'
2023-09-29T07:41:29,127   adding 'nuclear_toppar/toppar_all36_na_modifications.str'
2023-09-29T07:41:29,258   adding 'nuclear_toppar/toppar_all36_na_rna_modified.str'
2023-09-29T07:41:29,269   adding 'nuclear_toppar/toppar_water_ions.str'
2023-09-29T07:41:29,271   adding 'nuklear-0.0.1.dist-info/LICENSE.txt'
2023-09-29T07:41:29,272   adding 'nuklear-0.0.1.dist-info/METADATA'
2023-09-29T07:41:29,273   adding 'nuklear-0.0.1.dist-info/WHEEL'
2023-09-29T07:41:29,274   adding 'nuklear-0.0.1.dist-info/entry_points.txt'
2023-09-29T07:41:29,275   adding 'nuklear-0.0.1.dist-info/top_level.txt'
2023-09-29T07:41:29,276   adding 'nuklear-0.0.1.dist-info/RECORD'
2023-09-29T07:41:29,290   removing build/bdist.linux-armv7l/wheel
2023-09-29T07:41:29,393   Building wheel for nuklear (pyproject.toml): finished with status 'done'
2023-09-29T07:41:29,415   Created wheel for nuklear: filename=nuklear-0.0.1-py3-none-any.whl size=760409 sha256=ee61c103230f0706a58fb8097e33b3f39fc5840aea0b59159917c973f2bbbc0f
2023-09-29T07:41:29,416   Stored in directory: /tmp/pip-ephem-wheel-cache-nzwqq4zq/wheels/a3/45/5c/31470b84ff4c25fd857c262eef6e2277b601c95b7993c44fe6
2023-09-29T07:41:29,427 Successfully built nuklear
2023-09-29T07:41:29,457 Removed build tracker: '/tmp/pip-build-tracker-9s_bw453'