2023-10-01T08:55:30,323 Created temporary directory: /tmp/pip-build-tracker-9kaevvib 2023-10-01T08:55:30,324 Initialized build tracking at /tmp/pip-build-tracker-9kaevvib 2023-10-01T08:55:30,324 Created build tracker: /tmp/pip-build-tracker-9kaevvib 2023-10-01T08:55:30,325 Entered build tracker: /tmp/pip-build-tracker-9kaevvib 2023-10-01T08:55:30,326 Created temporary directory: /tmp/pip-wheel-wmfg8ezs 2023-10-01T08:55:30,329 Created temporary directory: /tmp/pip-ephem-wheel-cache-9ue6xpse 2023-10-01T08:55:30,350 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-01T08:55:30,354 2 location(s) to search for versions of viennarna: 2023-10-01T08:55:30,354 * https://pypi.org/simple/viennarna/ 2023-10-01T08:55:30,354 * https://www.piwheels.org/simple/viennarna/ 2023-10-01T08:55:30,355 Fetching project page and analyzing links: https://pypi.org/simple/viennarna/ 2023-10-01T08:55:30,356 Getting page https://pypi.org/simple/viennarna/ 2023-10-01T08:55:30,357 Found index url https://pypi.org/simple/ 2023-10-01T08:55:30,571 Fetched page https://pypi.org/simple/viennarna/ as application/vnd.pypi.simple.v1+json 2023-10-01T08:55:30,587 Found link https://files.pythonhosted.org/packages/77/72/75bb8baeebb7112f80e8561a3e31edef5d108309900e6cc409d4ced943cf/ViennaRNA-2.5.0a5.tar.gz (from https://pypi.org/simple/viennarna/), version: 2.5.0a5 2023-10-01T08:55:30,589 Found link https://files.pythonhosted.org/packages/82/c0/576a5423bb28d496f75bedad46a8edeafaef439c2573d56d2340c525dc8e/ViennaRNA-2.6.2a0.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2a0 2023-10-01T08:55:30,589 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/56/d7/4be5f10eed2081a3bd54b8ba051159d3d05432eecd58c83b72f535b76e21/ViennaRNA-2.6.2-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,590 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/89/fa/1b4d9474cff058f4e23ce3dffc2c8cc6fa7aa980782f44324fbeeabb55f0/ViennaRNA-2.6.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,590 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/b2/9eeacfc00e825ca78aabc27ead72c32b2056e74d784846e66c80549f8bc3/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,591 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a5/f3/9c602f1c4e7cf2bb95c31bba8b4908f2ddf862204aceb999377b1e76a263/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,592 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b9/50/273d56b829109ec99f52a3250d5975969ea92f8a1d1fe569460a8505a067/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,593 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/4e/c3/d1d4388ce289b97970f762a68cfd7821971b80e2c2a56c3e7c091485c966/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,593 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/fa/c1/b794e68d98c1b7a204e4e5da625e9953f83a3c554d19689d9a1108a1d9fb/ViennaRNA-2.6.2-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,594 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/de/45/e9b08e19992bec9300ffb94cd49f7ea974912cee94de5d4dd0b10697d0d7/ViennaRNA-2.6.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,594 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/38/c8/71736f66a09668eaef822836989f72781dd8ae12f4d0303170445429889c/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,595 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/70/56/bf9b92ad84d1aa0b31265d9a14c58ffcaa236ae460c4365737145bb12489/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,596 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ba/69/db7732e6870f2f25c62edbc619cffc645394a8d54e6f8a928961036d78e1/ViennaRNA-2.6.2-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,597 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/04/c1/f5c82621ad6b749fd552d59de22f520f908277dd976f4d5a33f367d30de8/ViennaRNA-2.6.2-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,597 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f3/3e/5b5dec4d557b9f654c71b89f7aad42a7f9fc4c7c87f1a9fa68e5a51b3163/ViennaRNA-2.6.2-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,598 Skipping link: No binaries permitted for viennarna: 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https://files.pythonhosted.org/packages/36/44/ac509347ec8f9b9c5cb69f4adc993b6f782bab7ed63639a1645450bb5d1c/ViennaRNA-2.6.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,602 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b8/34/89df39d5162afa18e7f487cb110d8aa8ae936d909b42e3be398e1c41b758/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,602 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/bb/0f/c33a98d884ada4b9c7478bed87eb0c66de9da9ecc45babf7604e652d7e36/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,603 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e6/57/7f28f32fa5b43507cd5d4b871fa8d5a43645db2acaf94a028c31b7dd1d8b/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,604 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/a7/fe40da076361a3c71467bcdbba0fc42bab89b4561869c966ffa2539dc942/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,605 Found link https://files.pythonhosted.org/packages/b3/73/44904c687790f2d9e151caf4dc6f1a97eb1beb5da1d089a79784abefa4a2/ViennaRNA-2.6.2.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2 2023-10-01T08:55:30,605 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a3/9e/1e2ae50082ea8589f06adc18fd9d4ba5d5eceeaf11fdb00a507a7633a6c5/ViennaRNA-2.6.3-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,606 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/5f/8f/c4b456b1d535ca3a5f5647e038f5ec9fab5925482fb538fcba51f2bc6a44/ViennaRNA-2.6.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,606 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/24/86/ceb1b342925dedb6a9e5fd4eddf3c66f3c511e42c4a8e34aa20aa04b6ed5/ViennaRNA-2.6.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,607 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/6c/c7/373786745bf38c4a76662c103222151f55d33f7a0862bf557fdb95578526/ViennaRNA-2.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,607 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/08/05/67326020bf4fb1f0b1326933453e8e41a36c3bfdea6b8cf87a07bcb3daf4/ViennaRNA-2.6.3-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,608 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/48/2f/e59a3b66f4ca9abc6e2aa2cd8ec21d1539d133756ebfbe8dfd2f3b591199/ViennaRNA-2.6.3-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,609 Skipping link: No binaries permitted for viennarna: 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https://files.pythonhosted.org/packages/e3/90/8324e8a078d271eea60e30163e0097f40b5fffcfc2f22ebc60af685cb4ce/ViennaRNA-2.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,619 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/23/08/678c1fa8bd1c355fecfd9375434cfb452bdf1d9d5eb67147c2a8f2f0b85f/ViennaRNA-2.6.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,620 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/08/71/4cf098294da264cadbd1e35e25f5664b37278ce4640ff983f9a48a4b442f/ViennaRNA-2.6.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,621 Found link https://files.pythonhosted.org/packages/3b/c9/0f29227b21be07188d7eca38fdc1d4a8f5aff444e2301f635b48c5a9212a/ViennaRNA-2.6.3.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.3 2023-10-01T08:55:30,621 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ae/44/d577ecb451fb46a247c532af2b64ac5210cbaa44670e338f2a5f5d9f26a9/ViennaRNA-2.6.4-cp310-cp310-macosx_10_14_universal2.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,622 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/37/f4/512139978d1abea349cc9b47105a89650c362458ef197ffae65a542ed987/ViennaRNA-2.6.4-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,622 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/d3/3d/dad21aa9984aabe2e7e2e4a654980b4f97e1055269683ec2aabaf3636868/ViennaRNA-2.6.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,623 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/22/4e/0bee35f4b5473d4e67e2bd6b86e3f7f3e810a2e0fd65af6bd3127bf9cc46/ViennaRNA-2.6.4-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,623 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/2c/28/a02e7c3f4f9a8ba7a04f731c501e2bf993712a3f6c4ddc0515f304c4d142/ViennaRNA-2.6.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,624 Skipping link: No binaries permitted for viennarna: 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https://files.pythonhosted.org/packages/1b/c4/bdfee2a4919c3a1c61bca62fb4b31b876ff29036580d3df86df9f4ff1fa8/ViennaRNA-2.6.4-cp311-cp311-macosx_10_14_universal2.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,627 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/80/95/ea210ec71ba5c4733bd2d38b5a28dc75aa4f9e25121901a701e638227d26/ViennaRNA-2.6.4-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,627 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/0a/9b/f0aaa97ae5066f7834a5ebb1715a5543d5788b51e4d88c28d0991a99cfd0/ViennaRNA-2.6.4-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,628 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b5/de/6938be5328062a168d423d1bfd9de198cc37d37ec6d255118e7e5f02fd54/ViennaRNA-2.6.4-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,628 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/0d/46/320b29d453cfbc56702bccc99d62be5d38f4cd48adfae988c6129afd6d66/ViennaRNA-2.6.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,629 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ff/d7/38c0c83ba378c8fd16df113e95a57c7f4c82b76f4591f2ac42487a58a8dc/ViennaRNA-2.6.4-cp311-cp311-musllinux_1_1_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,630 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ae/11/a811edc36fb930843041fa6a9a48ae64b0417810c107e80bd83b9cc472f3/ViennaRNA-2.6.4-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,630 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/37/a4/6b7fd246c3f2f18315fbadab6d29fe38c9f69d587d3921f3fa6aca24f8d7/ViennaRNA-2.6.4-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,631 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b4/7e/9bebb77adce65380a0b484cdc51fb8e231d8ae6e6193bbce82f6924d011d/ViennaRNA-2.6.4-cp38-cp38-macosx_10_14_universal2.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,631 Skipping link: No binaries permitted for viennarna: 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https://files.pythonhosted.org/packages/ac/04/81d46b8ca018f1da5a47f5df970f4d8a3bd5ad5ed11a0d3b8b4fc7990293/ViennaRNA-2.6.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,633 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/57/f3/3b162475fcbc331b0a6cb7283ad7db93ed81fce1cfb755346171c2561972/ViennaRNA-2.6.4-cp38-cp38-musllinux_1_1_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,634 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/de/ec/8b6ef6ae823185a09e338b6bc5c30fc24954b64adbc22ff0cd94b7006ebc/ViennaRNA-2.6.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,634 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/54/1c/5a3ab1a182eb1cd722fe705f2bb3f7f1b69d2a2e2c58d2041f1ead0a5cbe/ViennaRNA-2.6.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,635 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/12/a4/de2e4073d00e5875180c03f6959d7d21236aeaff9f4abba5ed4c0103caec/ViennaRNA-2.6.4-cp39-cp39-macosx_10_14_universal2.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,635 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/00/e4/0e3be2424395638a2a1b13be9d77026fcc88c3df049214d65e952abd86e0/ViennaRNA-2.6.4-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,637 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/83/e8/e3ca4ea66864ffd6ee92dff037fee55cd7c71c2e308582e619149b90f728/ViennaRNA-2.6.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,637 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c8/00/9060255b59929afe91da29d289cd8c938005617babf07959740c57ff39eb/ViennaRNA-2.6.4-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,637 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a9/4b/3a29f5b1d16303060114ac246822b15f7cd72bdc41807bf4fc6acc3714d5/ViennaRNA-2.6.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,638 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/50/74/785b12ae7fb30cf8866857e9e16f4e420958bdccf40ccf237b1d9dd2ca86/ViennaRNA-2.6.4-cp39-cp39-musllinux_1_1_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,638 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/d5/b9/f2c15d890d305bc028ed7e24bb7039d7d7dd918172a5684ea6d68203cba0/ViennaRNA-2.6.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,639 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/07/68/80cf4d7b0c905f27dbfbbfe24ed0aeba243053807fecc553cbb3bbf81b31/ViennaRNA-2.6.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-01T08:55:30,639 Found link https://files.pythonhosted.org/packages/72/f2/5c17a51459fe4f2bcf5f9bfb269aef2c35d1776cb2b03b62543d112bfb82/ViennaRNA-2.6.4.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.4 2023-10-01T08:55:30,640 Fetching project page and analyzing links: https://www.piwheels.org/simple/viennarna/ 2023-10-01T08:55:30,641 Getting page https://www.piwheels.org/simple/viennarna/ 2023-10-01T08:55:30,643 Found index url https://www.piwheels.org/simple/ 2023-10-01T08:55:30,798 Fetched page https://www.piwheels.org/simple/viennarna/ as text/html 2023-10-01T08:55:30,799 Skipping link: not a file: https://www.piwheels.org/simple/viennarna/ 2023-10-01T08:55:30,800 Skipping link: not a file: https://pypi.org/simple/viennarna/ 2023-10-01T08:55:30,820 Given no hashes to check 1 links for project 'viennarna': discarding no candidates 2023-10-01T08:55:30,839 Collecting viennarna==2.6.4 2023-10-01T08:55:30,841 Created temporary directory: /tmp/pip-unpack-xr5us5k0 2023-10-01T08:55:31,149 Downloading ViennaRNA-2.6.4.tar.gz (5.8 MB) 2023-10-01T08:55:38,160 Added viennarna==2.6.4 from https://files.pythonhosted.org/packages/72/f2/5c17a51459fe4f2bcf5f9bfb269aef2c35d1776cb2b03b62543d112bfb82/ViennaRNA-2.6.4.tar.gz to build tracker '/tmp/pip-build-tracker-9kaevvib' 2023-10-01T08:55:38,165 Created temporary directory: /tmp/pip-build-env-b7wnii35 2023-10-01T08:55:38,170 Installing build dependencies: started 2023-10-01T08:55:38,171 Running command pip subprocess to install build dependencies 2023-10-01T08:55:39,346 Using pip 23.2.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11) 2023-10-01T08:55:39,859 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-01T08:55:41,413 Collecting setuptools>=61.0 2023-10-01T08:55:41,477 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-10-01T08:55:44,199 Installing collected packages: setuptools 2023-10-01T08:55:46,416 Successfully installed setuptools-68.2.2 2023-10-01T08:55:46,901 Installing build dependencies: finished with status 'done' 2023-10-01T08:55:46,904 Getting requirements to build wheel: started 2023-10-01T08:55:46,905 Running command Getting requirements to build wheel 2023-10-01T08:55:47,708 running egg_info 2023-10-01T08:55:47,712 writing ViennaRNA.egg-info/PKG-INFO 2023-10-01T08:55:47,716 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2023-10-01T08:55:47,718 writing top-level names to ViennaRNA.egg-info/top_level.txt 2023-10-01T08:55:47,737 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-10-01T08:55:47,964 reading manifest template 'MANIFEST.in' 2023-10-01T08:55:49,350 adding license file 'COPYING' 2023-10-01T08:55:49,350 adding license file 'AUTHORS' 2023-10-01T08:55:49,436 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-10-01T08:55:49,551 Getting requirements to build wheel: finished with status 'done' 2023-10-01T08:55:49,559 Installing backend dependencies: started 2023-10-01T08:55:49,560 Running command pip subprocess to install backend dependencies 2023-10-01T08:55:50,726 Using pip 23.2.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11) 2023-10-01T08:55:51,228 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-01T08:55:51,755 Collecting wheel 2023-10-01T08:55:51,771 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-10-01T08:55:54,141 Installing collected packages: wheel 2023-10-01T08:55:54,363 Creating /tmp/pip-build-env-b7wnii35/normal/local/bin 2023-10-01T08:55:54,366 changing mode of /tmp/pip-build-env-b7wnii35/normal/local/bin/wheel to 755 2023-10-01T08:55:54,377 Successfully installed wheel-0.41.2 2023-10-01T08:55:54,830 Installing backend dependencies: finished with status 'done' 2023-10-01T08:55:54,832 Created temporary directory: /tmp/pip-modern-metadata-1i4x44rt 2023-10-01T08:55:54,835 Preparing metadata (pyproject.toml): started 2023-10-01T08:55:54,836 Running command Preparing metadata (pyproject.toml) 2023-10-01T08:55:55,656 running dist_info 2023-10-01T08:55:55,661 creating /tmp/pip-modern-metadata-1i4x44rt/ViennaRNA.egg-info 2023-10-01T08:55:55,664 writing /tmp/pip-modern-metadata-1i4x44rt/ViennaRNA.egg-info/PKG-INFO 2023-10-01T08:55:55,668 writing dependency_links to /tmp/pip-modern-metadata-1i4x44rt/ViennaRNA.egg-info/dependency_links.txt 2023-10-01T08:55:55,670 writing top-level names to /tmp/pip-modern-metadata-1i4x44rt/ViennaRNA.egg-info/top_level.txt 2023-10-01T08:55:55,672 writing manifest file '/tmp/pip-modern-metadata-1i4x44rt/ViennaRNA.egg-info/SOURCES.txt' 2023-10-01T08:55:55,704 reading manifest file '/tmp/pip-modern-metadata-1i4x44rt/ViennaRNA.egg-info/SOURCES.txt' 2023-10-01T08:55:55,706 reading manifest template 'MANIFEST.in' 2023-10-01T08:55:57,095 adding license file 'COPYING' 2023-10-01T08:55:57,096 adding license file 'AUTHORS' 2023-10-01T08:55:57,154 writing manifest file '/tmp/pip-modern-metadata-1i4x44rt/ViennaRNA.egg-info/SOURCES.txt' 2023-10-01T08:55:57,157 creating '/tmp/pip-modern-metadata-1i4x44rt/ViennaRNA-2.6.4.dist-info' 2023-10-01T08:55:57,305 Preparing metadata (pyproject.toml): finished with status 'done' 2023-10-01T08:55:57,311 Source in /tmp/pip-wheel-wmfg8ezs/viennarna_6ad0e30e1e774aedb4f8acc7424b91bb has version 2.6.4, which satisfies requirement viennarna==2.6.4 from https://files.pythonhosted.org/packages/72/f2/5c17a51459fe4f2bcf5f9bfb269aef2c35d1776cb2b03b62543d112bfb82/ViennaRNA-2.6.4.tar.gz 2023-10-01T08:55:57,312 Removed viennarna==2.6.4 from https://files.pythonhosted.org/packages/72/f2/5c17a51459fe4f2bcf5f9bfb269aef2c35d1776cb2b03b62543d112bfb82/ViennaRNA-2.6.4.tar.gz from build tracker '/tmp/pip-build-tracker-9kaevvib' 2023-10-01T08:55:57,319 Created temporary directory: /tmp/pip-unpack-37wdtdpo 2023-10-01T08:55:57,320 Created temporary directory: /tmp/pip-unpack-o1h0qike 2023-10-01T08:55:57,324 Building wheels for collected packages: viennarna 2023-10-01T08:55:57,329 Created temporary directory: /tmp/pip-wheel-v6btnvoh 2023-10-01T08:55:57,329 Destination directory: /tmp/pip-wheel-v6btnvoh 2023-10-01T08:55:57,332 Building wheel for viennarna (pyproject.toml): started 2023-10-01T08:55:57,333 Running command Building wheel for viennarna (pyproject.toml) 2023-10-01T08:55:58,117 running bdist_wheel 2023-10-01T08:55:58,132 running build 2023-10-01T08:55:58,132 running build_py 2023-10-01T08:55:58,136 creating build 2023-10-01T08:55:58,136 creating build/lib.linux-armv7l-cpython-311 2023-10-01T08:55:58,137 creating build/lib.linux-armv7l-cpython-311/RNA 2023-10-01T08:55:58,138 copying interfaces/Python/RNA/__init__.py -> build/lib.linux-armv7l-cpython-311/RNA 2023-10-01T08:55:58,140 copying interfaces/Python/RNA/RNA.py -> build/lib.linux-armv7l-cpython-311/RNA 2023-10-01T08:55:58,151 creating build/lib.linux-armv7l-cpython-311/ViennaRNA 2023-10-01T08:55:58,151 copying interfaces/Python/ViennaRNA/__init__.py -> build/lib.linux-armv7l-cpython-311/ViennaRNA 2023-10-01T08:55:58,154 running egg_info 2023-10-01T08:55:58,157 writing ViennaRNA.egg-info/PKG-INFO 2023-10-01T08:55:58,161 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2023-10-01T08:55:58,162 writing top-level names to ViennaRNA.egg-info/top_level.txt 2023-10-01T08:55:58,172 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-10-01T08:55:58,211 reading manifest template 'MANIFEST.in' 2023-10-01T08:55:59,603 adding license file 'COPYING' 2023-10-01T08:55:59,604 adding license file 'AUTHORS' 2023-10-01T08:55:59,684 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-10-01T08:55:59,751 running build_ext 2023-10-01T08:55:59,757 building 'RNA._RNA' extension 2023-10-01T08:55:59,760 creating build/temp.linux-armv7l-cpython-311 2023-10-01T08:55:59,760 creating build/temp.linux-armv7l-cpython-311/interfaces 2023-10-01T08:55:59,761 creating build/temp.linux-armv7l-cpython-311/interfaces/Python 2023-10-01T08:55:59,762 creating build/temp.linux-armv7l-cpython-311/src 2023-10-01T08:55:59,763 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA 2023-10-01T08:55:59,765 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints 2023-10-01T08:55:59,766 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures 2023-10-01T08:55:59,767 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io 2023-10-01T08:55:59,768 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape 2023-10-01T08:55:59,769 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops 2023-10-01T08:55:59,770 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params 2023-10-01T08:55:59,771 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting 2023-10-01T08:55:59,772 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler 2023-10-01T08:55:59,773 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/naview 2023-10-01T08:55:59,774 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/search 2023-10-01T08:55:59,775 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils 2023-10-01T08:55:59,776 creating build/temp.linux-armv7l-cpython-311/src/cephes 2023-10-01T08:55:59,777 creating build/temp.linux-armv7l-cpython-311/src/json 2023-10-01T08:55:59,778 creating build/temp.linux-armv7l-cpython-311/src/libsvm-3.31 2023-10-01T08:55:59,778 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c interfaces/Python/RNA_wrap.cpp -o build/temp.linux-armv7l-cpython-311/interfaces/Python/RNA_wrap.o -fopenmp 2023-10-01T08:56:14,278 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned char var_array_Sl_unsigned_SS_char_Sg__get(const var_array*, int)’: 2023-10-01T08:56:14,279 interfaces/Python/RNA_wrap.cpp:7255:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T08:56:14,280 7255 | if (((i < 0) && (-i >= max_i)) || 2023-10-01T08:56:14,280 | ~~~^~~~~~~~ 2023-10-01T08:56:14,281 interfaces/Python/RNA_wrap.cpp:7256:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T08:56:14,281 7256 | ((i >= 0) && (i >= max_i))) 2023-10-01T08:56:14,282 | ~~^~~~~~~~ 2023-10-01T08:56:14,301 interfaces/Python/RNA_wrap.cpp: In function ‘const char var_array_Sl_char_Sg__get(const var_array*, int)’: 2023-10-01T08:56:14,301 interfaces/Python/RNA_wrap.cpp:7468:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T08:56:14,302 7468 | if (((i < 0) && (-i >= max_i)) || 2023-10-01T08:56:14,303 | ~~~^~~~~~~~ 2023-10-01T08:56:14,303 interfaces/Python/RNA_wrap.cpp:7469:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T08:56:14,304 7469 | ((i >= 0) && (i >= max_i))) 2023-10-01T08:56:14,305 | ~~^~~~~~~~ 2023-10-01T08:56:14,327 interfaces/Python/RNA_wrap.cpp: In function ‘const short int var_array_Sl_short_Sg__get(const var_array*, int)’: 2023-10-01T08:56:14,327 interfaces/Python/RNA_wrap.cpp:7658:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T08:56:14,328 7658 | if (((i < 0) && (-i >= max_i)) || 2023-10-01T08:56:14,329 | ~~~^~~~~~~~ 2023-10-01T08:56:14,330 interfaces/Python/RNA_wrap.cpp:7659:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T08:56:14,331 7659 | ((i >= 0) && (i >= max_i))) 2023-10-01T08:56:14,331 | ~~^~~~~~~~ 2023-10-01T08:56:14,347 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned int var_array_Sl_unsigned_SS_int_Sg__get(const var_array*, int)’: 2023-10-01T08:56:14,348 interfaces/Python/RNA_wrap.cpp:7871:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T08:56:14,349 7871 | if (((i < 0) && (-i >= max_i)) || 2023-10-01T08:56:14,349 | ~~~^~~~~~~~ 2023-10-01T08:56:14,350 interfaces/Python/RNA_wrap.cpp:7872:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T08:56:14,351 7872 | ((i >= 0) && (i >= max_i))) 2023-10-01T08:56:14,352 | ~~^~~~~~~~ 2023-10-01T08:56:14,368 interfaces/Python/RNA_wrap.cpp: In function ‘const int var_array_Sl_int_Sg__get(const var_array*, int)’: 2023-10-01T08:56:14,369 interfaces/Python/RNA_wrap.cpp:8061:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T08:56:14,369 8061 | if (((i < 0) && (-i >= max_i)) || 2023-10-01T08:56:14,370 | ~~~^~~~~~~~ 2023-10-01T08:56:14,371 interfaces/Python/RNA_wrap.cpp:8062:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T08:56:14,372 8062 | ((i >= 0) && (i >= max_i))) 2023-10-01T08:56:14,373 | ~~^~~~~~~~ 2023-10-01T08:56:14,389 interfaces/Python/RNA_wrap.cpp: In function ‘const FLT_OR_DBL var_array_Sl_FLT_OR_DBL_Sg__get(const var_array*, int)’: 2023-10-01T08:56:14,390 interfaces/Python/RNA_wrap.cpp:8251:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T08:56:14,390 8251 | if (((i < 0) && (-i >= max_i)) || 2023-10-01T08:56:14,391 | ~~~^~~~~~~~ 2023-10-01T08:56:14,391 interfaces/Python/RNA_wrap.cpp:8252:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T08:56:14,392 8252 | ((i >= 0) && (i >= max_i))) 2023-10-01T08:56:14,393 | ~~^~~~~~~~ 2023-10-01T08:56:14,404 interfaces/Python/RNA_wrap.cpp: In function ‘const vrna_move_t var_array_Sl_vrna_move_t_Sg__get(const var_array*, int)’: 2023-10-01T08:56:14,405 interfaces/Python/RNA_wrap.cpp:8441:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T08:56:14,406 8441 | if (((i < 0) && (-i >= max_i)) || 2023-10-01T08:56:14,406 | ~~~^~~~~~~~ 2023-10-01T08:56:14,407 interfaces/Python/RNA_wrap.cpp:8442:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T08:56:14,407 8442 | ((i >= 0) && (i >= max_i))) 2023-10-01T08:56:14,408 | ~~^~~~~~~~ 2023-10-01T08:56:14,490 interfaces/Python/RNA_wrap.cpp: In function ‘var_array* my_ptable(std::string, unsigned int)’: 2023-10-01T08:56:14,491 interfaces/Python/RNA_wrap.cpp:8964:21: warning: unused variable ‘i’ [-Wunused-variable] 2023-10-01T08:56:14,492 8964 | int i; 2023-10-01T08:56:14,493 | ^ 2023-10-01T08:56:14,494 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_pt_pk_remove(std::vector >, unsigned int)’: 2023-10-01T08:56:14,495 interfaces/Python/RNA_wrap.cpp:9018:15: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T08:56:14,496 9018 | if (pt[0] != pt.size() - 1) 2023-10-01T08:56:14,508 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_loopidx_from_ptable(std::vector >)’: 2023-10-01T08:56:14,509 interfaces/Python/RNA_wrap.cpp:9170:25: warning: unused variable ‘i’ [-Wunused-variable] 2023-10-01T08:56:14,510 9170 | int i, *idx; 2023-10-01T08:56:14,511 | ^ 2023-10-01T08:56:14,571 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, float*)’: 2023-10-01T08:56:14,572 interfaces/Python/RNA_wrap.cpp:10217:11: warning: unused variable ‘s’ [-Wunused-variable] 2023-10-01T08:56:14,573 10217 | char *s, **tok, **ptr, *struc, *sequence; 2023-10-01T08:56:14,574 | ^ 2023-10-01T08:56:14,576 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, char*, float*)’: 2023-10-01T08:56:14,576 interfaces/Python/RNA_wrap.cpp:10268:11: warning: unused variable ‘s’ [-Wunused-variable] 2023-10-01T08:56:14,577 10268 | char *s, **tok, **ptr, *struc, *sequence; 2023-10-01T08:56:14,578 | ^ 2023-10-01T08:56:14,586 interfaces/Python/RNA_wrap.cpp: In function ‘double my_pf_add(double, double, double)’: 2023-10-01T08:56:14,587 interfaces/Python/RNA_wrap.cpp:10521:12: warning: unused variable ‘result’ [-Wunused-variable] 2023-10-01T08:56:14,588 10521 | double result = 0; 2023-10-01T08:56:14,589 | ^~~~~~ 2023-10-01T08:56:14,656 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_command_s* my_file_commands_read(std::string, unsigned int)’: 2023-10-01T08:56:14,657 interfaces/Python/RNA_wrap.cpp:11288:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-10-01T08:56:14,658 11288 | int i; 2023-10-01T08:56:14,658 | ^ 2023-10-01T08:56:14,773 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_sc_f_callback(int, int, int, int, unsigned char, void*)’: 2023-10-01T08:56:14,774 interfaces/Python/RNA_wrap.cpp:12638:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-01T08:56:14,774 12638 | PyObject *func, *arglist, *result, *err; 2023-10-01T08:56:14,775 | ^~~~~~~ 2023-10-01T08:56:14,779 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_basepair_t* py_wrap_sc_bt_callback(int, int, int, int, unsigned char, void*)’: 2023-10-01T08:56:14,780 interfaces/Python/RNA_wrap.cpp:12710:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-01T08:56:14,780 12710 | PyObject *func, *arglist, *result, *bp, *err; 2023-10-01T08:56:14,781 | ^~~~~~~ 2023-10-01T08:56:14,783 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_sc_exp_f_callback(int, int, int, int, unsigned char, void*)’: 2023-10-01T08:56:14,784 interfaces/Python/RNA_wrap.cpp:12829:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-01T08:56:14,784 12829 | PyObject *func, *arglist, *result, *err; 2023-10-01T08:56:14,785 | ^~~~~~~ 2023-10-01T08:56:14,798 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_ud_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2023-10-01T08:56:14,799 interfaces/Python/RNA_wrap.cpp:13269:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-01T08:56:14,799 13269 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2023-10-01T08:56:14,800 | ^~~~~~~ 2023-10-01T08:56:14,802 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_exp_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2023-10-01T08:56:14,803 interfaces/Python/RNA_wrap.cpp:13329:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-01T08:56:14,804 13329 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2023-10-01T08:56:14,805 | ^~~~~~~ 2023-10-01T08:56:14,806 interfaces/Python/RNA_wrap.cpp: In function ‘void py_wrap_ud_prob_add(vrna_fold_compound_t*, int, int, unsigned int, FLT_OR_DBL, void*)’: 2023-10-01T08:56:14,807 interfaces/Python/RNA_wrap.cpp:13389:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-01T08:56:14,807 13389 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_prob; 2023-10-01T08:56:14,808 | ^~~~~~~ 2023-10-01T08:56:14,809 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_prob_get(vrna_fold_compound_t*, int, int, unsigned int, int, void*)’: 2023-10-01T08:56:14,810 interfaces/Python/RNA_wrap.cpp:13448:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-01T08:56:14,811 13448 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_motif; 2023-10-01T08:56:14,812 | ^~~~~~~ 2023-10-01T08:56:14,813 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_subopt_cb(const char*, float, void*)’: 2023-10-01T08:56:14,814 interfaces/Python/RNA_wrap.cpp:13550:37: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-01T08:56:14,815 13550 | PyObject *func, *arglist, *result, *err, *py_structure, *py_energy; 2023-10-01T08:56:14,816 | ^~~~~~~ 2023-10-01T08:56:14,817 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_bs_cb(const char*, void*)’: 2023-10-01T08:56:14,818 interfaces/Python/RNA_wrap.cpp:13636:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-01T08:56:14,818 13636 | PyObject *func, *arglist, *result, *err; 2023-10-01T08:56:14,819 | ^~~~~~~ 2023-10-01T08:56:14,819 interfaces/Python/RNA_wrap.cpp:13641:28: warning: unused variable ‘py_energy’ [-Wunused-variable] 2023-10-01T08:56:14,820 13641 | PyObject *py_structure, *py_energy; 2023-10-01T08:56:14,820 | ^~~~~~~~~ 2023-10-01T08:56:14,822 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_cb(int, int, const char*, float, void*)’: 2023-10-01T08:56:14,822 interfaces/Python/RNA_wrap.cpp:13735:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-01T08:56:14,823 13735 | PyObject *func, *arglist, *result, *err; 2023-10-01T08:56:14,823 | ^~~~~~~ 2023-10-01T08:56:14,825 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_zscore_cb(int, int, const char*, float, float, void*)’: 2023-10-01T08:56:14,825 interfaces/Python/RNA_wrap.cpp:13789:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-01T08:56:14,826 13789 | PyObject *func, *arglist, *result, *err; 2023-10-01T08:56:14,826 | ^~~~~~~ 2023-10-01T08:56:14,833 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_pf_window_cb(FLT_OR_DBL*, int, int, int, unsigned int, void*)’: 2023-10-01T08:56:14,833 interfaces/Python/RNA_wrap.cpp:13941:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-01T08:56:14,834 13941 | PyObject *func, *arglist, *result, *pr_list, *err; 2023-10-01T08:56:14,835 | ^~~~~~~ 2023-10-01T08:56:14,838 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_heat_capacity_cb(float, float, void*)’: 2023-10-01T08:56:14,839 interfaces/Python/RNA_wrap.cpp:14100:43: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-01T08:56:14,839 14100 | PyObject *func, *arglist, *result, *err, *py_temp, *py_hc; 2023-10-01T08:56:14,840 | ^~~~~~~ 2023-10-01T08:56:14,842 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_move_update_cb(vrna_fold_compound_t*, vrna_move_t, unsigned int, void*)’: 2023-10-01T08:56:14,843 interfaces/Python/RNA_wrap.cpp:14194:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-01T08:56:14,844 14194 | PyObject *func, *arglist, *result, *err, *py_fc, *py_neighbor, *py_state; 2023-10-01T08:56:14,845 | ^~~~~~~ 2023-10-01T08:56:14,873 interfaces/Python/RNA_wrap.cpp: In function ‘double vrna_fold_compound_t_exp_E_ext_stem(vrna_fold_compound_t*, int, int)’: 2023-10-01T08:56:14,874 interfaces/Python/RNA_wrap.cpp:14554:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:56:14,875 14554 | if (j < self->length) 2023-10-01T08:56:14,875 | ~~^~~~~~~~~~~~~~ 2023-10-01T08:56:14,910 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2023-10-01T08:56:14,910 interfaces/Python/RNA_wrap.cpp:14976:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-10-01T08:56:14,911 14976 | int i; 2023-10-01T08:56:14,912 | ^ 2023-10-01T08:56:14,915 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_gradient__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int)’: 2023-10-01T08:56:14,916 interfaces/Python/RNA_wrap.cpp:15020:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-10-01T08:56:14,917 15020 | int i; 2023-10-01T08:56:14,918 | ^ 2023-10-01T08:56:14,921 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_random__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2023-10-01T08:56:14,922 interfaces/Python/RNA_wrap.cpp:15064:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-10-01T08:56:14,922 15064 | int i; 2023-10-01T08:56:14,923 | ^ 2023-10-01T08:56:17,444 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_temperature_set(PyObject*)’: 2023-10-01T08:56:17,445 interfaces/Python/RNA_wrap.cpp:54962:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,445 54962 | fail: 2023-10-01T08:56:17,446 | ^~~~ 2023-10-01T08:56:17,446 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_dangles_set(PyObject*)’: 2023-10-01T08:56:17,447 interfaces/Python/RNA_wrap.cpp:54982:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,448 54982 | fail: 2023-10-01T08:56:17,448 | ^~~~ 2023-10-01T08:56:17,449 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_betaScale_set(PyObject*)’: 2023-10-01T08:56:17,449 interfaces/Python/RNA_wrap.cpp:55002:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,450 55002 | fail: 2023-10-01T08:56:17,450 | ^~~~ 2023-10-01T08:56:17,451 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_pf_smooth_set(PyObject*)’: 2023-10-01T08:56:17,452 interfaces/Python/RNA_wrap.cpp:55022:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,453 55022 | fail: 2023-10-01T08:56:17,453 | ^~~~ 2023-10-01T08:56:17,454 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_tetra_loop_set(PyObject*)’: 2023-10-01T08:56:17,455 interfaces/Python/RNA_wrap.cpp:55042:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,456 55042 | fail: 2023-10-01T08:56:17,456 | ^~~~ 2023-10-01T08:56:17,457 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_special_hp_set(PyObject*)’: 2023-10-01T08:56:17,458 interfaces/Python/RNA_wrap.cpp:55062:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,458 55062 | fail: 2023-10-01T08:56:17,459 | ^~~~ 2023-10-01T08:56:17,460 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLonelyPairs_set(PyObject*)’: 2023-10-01T08:56:17,461 interfaces/Python/RNA_wrap.cpp:55082:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,461 55082 | fail: 2023-10-01T08:56:17,462 | ^~~~ 2023-10-01T08:56:17,463 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLP_set(PyObject*)’: 2023-10-01T08:56:17,463 interfaces/Python/RNA_wrap.cpp:55102:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,464 55102 | fail: 2023-10-01T08:56:17,465 | ^~~~ 2023-10-01T08:56:17,465 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGU_set(PyObject*)’: 2023-10-01T08:56:17,466 interfaces/Python/RNA_wrap.cpp:55122:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,467 55122 | fail: 2023-10-01T08:56:17,468 | ^~~~ 2023-10-01T08:56:17,468 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_no_closingGU_set(PyObject*)’: 2023-10-01T08:56:17,469 interfaces/Python/RNA_wrap.cpp:55142:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,470 55142 | fail: 2023-10-01T08:56:17,470 | ^~~~ 2023-10-01T08:56:17,471 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGUclosure_set(PyObject*)’: 2023-10-01T08:56:17,472 interfaces/Python/RNA_wrap.cpp:55162:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,473 55162 | fail: 2023-10-01T08:56:17,473 | ^~~~ 2023-10-01T08:56:17,474 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_logML_set(PyObject*)’: 2023-10-01T08:56:17,474 interfaces/Python/RNA_wrap.cpp:55182:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,475 55182 | fail: 2023-10-01T08:56:17,475 | ^~~~ 2023-10-01T08:56:17,476 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_circ_set(PyObject*)’: 2023-10-01T08:56:17,476 interfaces/Python/RNA_wrap.cpp:55202:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,477 55202 | fail: 2023-10-01T08:56:17,477 | ^~~~ 2023-10-01T08:56:17,478 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_gquad_set(PyObject*)’: 2023-10-01T08:56:17,478 interfaces/Python/RNA_wrap.cpp:55222:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,479 55222 | fail: 2023-10-01T08:56:17,479 | ^~~~ 2023-10-01T08:56:17,480 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_uniq_ML_set(PyObject*)’: 2023-10-01T08:56:17,480 interfaces/Python/RNA_wrap.cpp:55242:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,481 55242 | fail: 2023-10-01T08:56:17,482 | ^~~~ 2023-10-01T08:56:17,482 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_energy_set_set(PyObject*)’: 2023-10-01T08:56:17,483 interfaces/Python/RNA_wrap.cpp:55262:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,483 55262 | fail: 2023-10-01T08:56:17,484 | ^~~~ 2023-10-01T08:56:17,485 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_backtrack_set(PyObject*)’: 2023-10-01T08:56:17,485 interfaces/Python/RNA_wrap.cpp:55282:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,486 55282 | fail: 2023-10-01T08:56:17,487 | ^~~~ 2023-10-01T08:56:17,488 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_do_backtrack_set(PyObject*)’: 2023-10-01T08:56:17,488 interfaces/Python/RNA_wrap.cpp:55325:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,489 55325 | fail: 2023-10-01T08:56:17,490 | ^~~~ 2023-10-01T08:56:17,491 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_compute_bpp_set(PyObject*)’: 2023-10-01T08:56:17,492 interfaces/Python/RNA_wrap.cpp:55345:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,493 55345 | fail: 2023-10-01T08:56:17,493 | ^~~~ 2023-10-01T08:56:17,494 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_max_bp_span_set(PyObject*)’: 2023-10-01T08:56:17,495 interfaces/Python/RNA_wrap.cpp:55365:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,495 55365 | fail: 2023-10-01T08:56:17,496 | ^~~~ 2023-10-01T08:56:17,497 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_min_loop_size_set(PyObject*)’: 2023-10-01T08:56:17,497 interfaces/Python/RNA_wrap.cpp:55385:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,498 55385 | fail: 2023-10-01T08:56:17,499 | ^~~~ 2023-10-01T08:56:17,500 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_window_size_set(PyObject*)’: 2023-10-01T08:56:17,500 interfaces/Python/RNA_wrap.cpp:55405:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,501 55405 | fail: 2023-10-01T08:56:17,502 | ^~~~ 2023-10-01T08:56:17,502 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_ribo_set(PyObject*)’: 2023-10-01T08:56:17,503 interfaces/Python/RNA_wrap.cpp:55448:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,504 55448 | fail: 2023-10-01T08:56:17,505 | ^~~~ 2023-10-01T08:56:17,506 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_cv_fact_set(PyObject*)’: 2023-10-01T08:56:17,507 interfaces/Python/RNA_wrap.cpp:55468:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,507 55468 | fail: 2023-10-01T08:56:17,508 | ^~~~ 2023-10-01T08:56:17,508 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_nc_fact_set(PyObject*)’: 2023-10-01T08:56:17,509 interfaces/Python/RNA_wrap.cpp:55488:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,509 55488 | fail: 2023-10-01T08:56:17,510 | ^~~~ 2023-10-01T08:56:17,510 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_sfact_set(PyObject*)’: 2023-10-01T08:56:17,511 interfaces/Python/RNA_wrap.cpp:55508:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,511 55508 | fail: 2023-10-01T08:56:17,512 | ^~~~ 2023-10-01T08:56:17,513 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_salt_set(PyObject*)’: 2023-10-01T08:56:17,513 interfaces/Python/RNA_wrap.cpp:55528:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,514 55528 | fail: 2023-10-01T08:56:17,514 | ^~~~ 2023-10-01T08:56:17,515 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInit_set(PyObject*)’: 2023-10-01T08:56:17,516 interfaces/Python/RNA_wrap.cpp:55548:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,516 55548 | fail: 2023-10-01T08:56:17,517 | ^~~~ 2023-10-01T08:56:17,517 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInitFact_set(PyObject*)’: 2023-10-01T08:56:17,518 interfaces/Python/RNA_wrap.cpp:55568:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:17,518 55568 | fail: 2023-10-01T08:56:17,519 | ^~~~ 2023-10-01T08:56:18,474 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_symbolset_set(PyObject*)’: 2023-10-01T08:56:18,475 interfaces/Python/RNA_wrap.cpp:70883:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-01T08:56:18,475 70883 | fail: 2023-10-01T08:56:18,476 | ^~~~ 2023-10-01T08:56:19,386 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-01T08:56:19,387 interfaces/Python/RNA_wrap.cpp:85694:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-10-01T08:56:19,388 85694 | PyObject *o, *o2, *o3; 2023-10-01T08:56:19,390 | ^~ 2023-10-01T08:56:19,392 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-01T08:56:19,394 interfaces/Python/RNA_wrap.cpp:85776:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-10-01T08:56:19,395 85776 | PyObject *o, *o2, *o3; 2023-10-01T08:56:19,396 | ^~ 2023-10-01T08:56:19,399 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-01T08:56:19,401 interfaces/Python/RNA_wrap.cpp:85866:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-10-01T08:56:19,402 85866 | PyObject *o, *o2, *o3; 2023-10-01T08:56:19,403 | ^~ 2023-10-01T08:56:19,534 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-01T08:56:19,535 interfaces/Python/RNA_wrap.cpp:88139:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-10-01T08:56:19,536 88139 | PyObject *o, *o2, *o3; 2023-10-01T08:56:19,537 | ^~ 2023-10-01T08:56:19,548 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-01T08:56:19,548 interfaces/Python/RNA_wrap.cpp:88384:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-10-01T08:56:19,549 88384 | PyObject *o, *o2, *o3; 2023-10-01T08:56:19,550 | ^~ 2023-10-01T08:56:19,561 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-01T08:56:19,562 interfaces/Python/RNA_wrap.cpp:88667:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-10-01T08:56:19,562 88667 | PyObject *o, *o2, *o3; 2023-10-01T08:56:19,563 | ^~ 2023-10-01T08:56:58,645 In file included from /usr/include/c++/12/vector:70, 2023-10-01T08:56:58,646 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-01T08:56:58,647 /usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-10-01T08:56:58,647 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:56:58,648 739 | vector<_Tp, _Alloc>:: 2023-10-01T08:56:58,648 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:56:58,649 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:56:58,650 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:56:59,676 /usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’: 2023-10-01T08:56:59,677 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:56:59,678 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:56:59,678 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:57:29,814 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-01T08:57:29,815 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval5’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T08:57:29,816 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-10-01T08:57:29,816 | ^ 2023-10-01T08:57:29,817 interfaces/Python/RNA_wrap.cpp:88087:26: note: ‘retval5’ was declared here 2023-10-01T08:57:29,818 88087 | vrna_pbacktrack_mem_t *retval5 ; 2023-10-01T08:57:29,818 | ^~~~~~~ 2023-10-01T08:57:29,920 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-01T08:57:29,920 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval6’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T08:57:29,921 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-10-01T08:57:29,922 | ^ 2023-10-01T08:57:29,929 interfaces/Python/RNA_wrap.cpp:88327:26: note: ‘retval6’ was declared here 2023-10-01T08:57:29,929 88327 | vrna_pbacktrack_mem_t *retval6 ; 2023-10-01T08:57:29,930 | ^~~~~~~ 2023-10-01T08:57:30,044 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-01T08:57:30,044 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval7’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T08:57:30,045 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-10-01T08:57:30,045 | ^ 2023-10-01T08:57:30,052 interfaces/Python/RNA_wrap.cpp:88605:26: note: ‘retval7’ was declared here 2023-10-01T08:57:30,053 88605 | vrna_pbacktrack_mem_t *retval7 ; 2023-10-01T08:57:30,053 | ^~~~~~~ 2023-10-01T08:57:41,789 /usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = duplex_list_t; _Alloc = std::allocator]’: 2023-10-01T08:57:41,790 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:57:41,791 739 | vector<_Tp, _Alloc>:: 2023-10-01T08:57:41,791 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:57:41,792 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:57:41,793 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:06,549 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_move_neighbor_diff__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-01T08:58:06,549 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘temp4’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T08:58:06,550 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-10-01T08:58:06,550 | ^ 2023-10-01T08:58:06,558 interfaces/Python/RNA_wrap.cpp:86462:29: note: ‘temp4’ was declared here 2023-10-01T08:58:06,558 86462 | var_array< vrna_move_t > *temp4 ; 2023-10-01T08:58:06,559 | ^~~~~ 2023-10-01T08:58:09,262 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-10-01T08:58:09,262 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:09,263 439 | vector<_Tp, _Alloc>:: 2023-10-01T08:58:09,264 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:09,304 In file included from /usr/include/c++/12/vector:64: 2023-10-01T08:58:09,305 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:09,305 inlined from ‘void std_vector_Sl_double_Sg__append(std::vector >*, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:5805:22, 2023-10-01T08:58:09,306 inlined from ‘PyObject* _wrap_DoubleVector_append(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23167:38: 2023-10-01T08:58:09,307 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:09,307 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:09,308 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:09,385 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:09,385 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4658:30: 2023-10-01T08:58:09,386 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:09,387 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:09,387 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:09,388 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:09,388 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4673:28: 2023-10-01T08:58:09,389 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:09,390 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:09,391 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:09,459 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:09,460 inlined from ‘PyObject* _wrap_DoubleVector_push_back(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23868:24: 2023-10-01T08:58:09,460 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:09,461 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:09,462 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:09,498 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]’: 2023-10-01T08:58:09,499 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:09,499 175 | vector<_Tp, _Alloc>:: 2023-10-01T08:58:09,500 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:09,512 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = double; _Alloc = std::allocator]’: 2023-10-01T08:58:09,513 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:09,514 189 | vector<_Tp, _Alloc>:: 2023-10-01T08:58:09,515 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:09,516 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:09,554 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:09,555 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4757:20: 2023-10-01T08:58:09,555 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:09,556 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-01T08:58:09,556 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:09,557 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:09,558 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4762:27: 2023-10-01T08:58:09,558 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:09,559 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-01T08:58:09,559 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:09,560 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:09,561 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4774:33: 2023-10-01T08:58:09,562 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:09,562 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-01T08:58:09,563 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:09,662 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:09,663 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-10-01T08:58:09,664 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4698:23: 2023-10-01T08:58:09,665 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:09,665 1779 | _M_range_insert(__pos, __first, __last, 2023-10-01T08:58:09,666 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:09,667 1780 | std::__iterator_category(__first)); 2023-10-01T08:58:09,667 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:09,668 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:09,668 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:09,669 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4705:22: 2023-10-01T08:58:09,669 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:09,670 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-01T08:58:09,671 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:09,671 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:09,672 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-10-01T08:58:09,672 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4708:23: 2023-10-01T08:58:09,673 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:09,674 1779 | _M_range_insert(__pos, __first, __last, 2023-10-01T08:58:09,675 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:09,675 1780 | std::__iterator_category(__first)); 2023-10-01T08:58:09,676 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:09,676 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:09,766 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:09,767 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4757:20, 2023-10-01T08:58:09,767 inlined from ‘void std_vector_Sl_double_Sg____delslice__(std::vector >*, std::vector >::difference_type, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:5742:21, 2023-10-01T08:58:09,768 inlined from ‘PyObject* _wrap_DoubleVector___delslice__(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:22629:46: 2023-10-01T08:58:09,769 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:09,769 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-01T08:58:09,770 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:09,817 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(iterator, _Arg&&) [with _Arg = double; _Tp = double; _Alloc = std::allocator]’: 2023-10-01T08:58:09,818 /usr/include/c++/12/bits/vector.tcc:407:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:09,819 407 | vector<_Tp, _Alloc>:: 2023-10-01T08:58:09,819 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:09,876 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2023-10-01T08:58:09,877 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:09,878 523 | vector<_Tp, _Alloc>:: 2023-10-01T08:58:09,878 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:18,521 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const vrna_path_s&}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-10-01T08:58:18,522 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:18,523 439 | vector<_Tp, _Alloc>:: 2023-10-01T08:58:18,523 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:18,565 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:58:18,566 inlined from ‘std::vector > my_get_path(std::string, std::string, std::string, int)’ at interfaces/Python/RNA_wrap.cpp:11728:20: 2023-10-01T08:58:18,567 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:18,567 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:18,568 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:18,635 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:58:18,636 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4658:30: 2023-10-01T08:58:18,637 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:18,637 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:18,638 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:18,639 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:58:18,640 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4673:28: 2023-10-01T08:58:18,641 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:18,641 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:18,642 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:18,716 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:58:18,717 inlined from ‘void std_vector_Sl_vrna_path_t_Sg__append(std::vector >*, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6911:22, 2023-10-01T08:58:18,717 inlined from ‘PyObject* _wrap_PathVector_append(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42315:43: 2023-10-01T08:58:18,718 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:18,719 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:18,719 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:18,767 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:58:18,768 inlined from ‘PyObject* _wrap_PathVector_push_back(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:43016:24: 2023-10-01T08:58:18,768 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:18,769 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:18,770 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:18,812 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-10-01T08:58:18,813 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:18,813 175 | vector<_Tp, _Alloc>:: 2023-10-01T08:58:18,814 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:18,826 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-10-01T08:58:18,827 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:18,828 189 | vector<_Tp, _Alloc>:: 2023-10-01T08:58:18,829 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:18,829 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:18,868 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:58:18,869 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4757:20: 2023-10-01T08:58:18,870 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:18,871 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-01T08:58:18,871 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:18,872 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:58:18,873 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4762:27: 2023-10-01T08:58:18,873 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:18,874 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-01T08:58:18,874 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:18,875 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:58:18,875 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4774:33: 2023-10-01T08:58:18,876 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:18,877 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-01T08:58:18,877 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:18,976 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:58:18,977 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-10-01T08:58:18,978 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4698:23: 2023-10-01T08:58:18,979 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:18,979 1779 | _M_range_insert(__pos, __first, __last, 2023-10-01T08:58:18,980 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:18,981 1780 | std::__iterator_category(__first)); 2023-10-01T08:58:18,981 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:18,982 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:18,983 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:58:18,984 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4705:22: 2023-10-01T08:58:18,984 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:18,985 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-01T08:58:18,985 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:18,986 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:58:18,986 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-10-01T08:58:18,987 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4708:23: 2023-10-01T08:58:18,988 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:18,988 1779 | _M_range_insert(__pos, __first, __last, 2023-10-01T08:58:18,989 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:18,990 1780 | std::__iterator_category(__first)); 2023-10-01T08:58:18,990 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:18,991 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:19,085 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:58:19,086 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4757:20, 2023-10-01T08:58:19,087 inlined from ‘void std_vector_Sl_vrna_path_t_Sg____delslice__(std::vector >*, std::vector >::difference_type, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:6848:21, 2023-10-01T08:58:19,087 inlined from ‘PyObject* _wrap_PathVector___delslice__(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:41777:51: 2023-10-01T08:58:19,088 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:19,089 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-01T08:58:19,090 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:19,137 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(iterator, _Arg&&) [with _Arg = vrna_path_s; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-10-01T08:58:19,137 /usr/include/c++/12/bits/vector.tcc:407:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:19,138 407 | vector<_Tp, _Alloc>:: 2023-10-01T08:58:19,138 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:19,202 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-10-01T08:58:19,202 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:19,203 523 | vector<_Tp, _Alloc>:: 2023-10-01T08:58:19,203 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:21,218 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const duplex_list_t&}; _Tp = duplex_list_t; _Alloc = std::allocator]’: 2023-10-01T08:58:21,219 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:21,219 439 | vector<_Tp, _Alloc>:: 2023-10-01T08:58:21,220 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:21,327 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:58:21,328 inlined from ‘void std_vector_Sl_duplex_list_t_Sg__append(std::vector >*, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:11498:22, 2023-10-01T08:58:21,328 inlined from ‘PyObject* _wrap_DuplexVector_append(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:74522:45: 2023-10-01T08:58:21,329 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:21,330 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:21,330 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:21,410 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:58:21,411 inlined from ‘std::vector > my_duplex_subopt(std::string, std::string, int, int)’ at interfaces/Python/RNA_wrap.cpp:11528:20: 2023-10-01T08:58:21,412 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:21,413 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:21,413 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:21,548 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:58:21,549 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4658:30: 2023-10-01T08:58:21,550 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:21,550 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:21,551 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:21,551 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:58:21,552 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4673:28: 2023-10-01T08:58:21,552 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:21,553 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:21,553 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:21,694 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:58:21,694 inlined from ‘PyObject* _wrap_DuplexVector_push_back(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:75223:24: 2023-10-01T08:58:21,695 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:21,696 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:21,696 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:21,776 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’: 2023-10-01T08:58:21,777 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:21,777 175 | vector<_Tp, _Alloc>:: 2023-10-01T08:58:21,778 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:21,847 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’: 2023-10-01T08:58:21,847 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:21,848 189 | vector<_Tp, _Alloc>:: 2023-10-01T08:58:21,849 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:21,849 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:21,917 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:58:21,918 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4757:20: 2023-10-01T08:58:21,919 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:21,920 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-01T08:58:21,920 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:21,921 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:58:21,921 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4762:27: 2023-10-01T08:58:21,922 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:21,922 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-01T08:58:21,923 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:21,923 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:58:21,924 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4774:33: 2023-10-01T08:58:21,925 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:21,925 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-01T08:58:21,926 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:22,044 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:58:22,045 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = duplex_list_t; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-10-01T08:58:22,046 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4698:23: 2023-10-01T08:58:22,047 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:22,047 1779 | _M_range_insert(__pos, __first, __last, 2023-10-01T08:58:22,048 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:22,049 1780 | std::__iterator_category(__first)); 2023-10-01T08:58:22,050 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:22,051 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:22,051 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:58:22,053 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4705:22: 2023-10-01T08:58:22,053 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:22,054 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-01T08:58:22,054 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:22,055 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:58:22,055 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = duplex_list_t; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-10-01T08:58:22,056 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4708:23: 2023-10-01T08:58:22,056 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:22,057 1779 | _M_range_insert(__pos, __first, __last, 2023-10-01T08:58:22,058 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:22,059 1780 | std::__iterator_category(__first)); 2023-10-01T08:58:22,059 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:22,060 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:22,174 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:58:22,175 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4757:20, 2023-10-01T08:58:22,176 inlined from ‘void std_vector_Sl_duplex_list_t_Sg____delslice__(std::vector >*, std::vector >::difference_type, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:11435:21, 2023-10-01T08:58:22,177 inlined from ‘PyObject* _wrap_DuplexVector___delslice__(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:73984:53: 2023-10-01T08:58:22,177 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:22,178 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-01T08:58:22,179 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:22,266 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(iterator, _Arg&&) [with _Arg = duplex_list_t; _Tp = duplex_list_t; _Alloc = std::allocator]’: 2023-10-01T08:58:22,266 /usr/include/c++/12/bits/vector.tcc:407:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:22,267 407 | vector<_Tp, _Alloc>:: 2023-10-01T08:58:22,267 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:27,468 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:58:27,469 inlined from ‘std::vector > my_aliduplex_subopt(std::vector, std::allocator > >, std::vector, std::allocator > >, int, int)’ at interfaces/Python/RNA_wrap.cpp:11572:20: 2023-10-01T08:58:27,470 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:27,470 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:27,471 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:27,766 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-10-01T08:58:27,766 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:58:27,767 439 | vector<_Tp, _Alloc>:: 2023-10-01T08:58:27,768 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:27,824 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:27,825 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-10-01T08:58:27,826 inlined from ‘std::vector > my_aln_conservation_struct(std::vector, std::allocator > >, std::string, vrna_md_t*)’ at interfaces/Python/RNA_wrap.cpp:9436:31: 2023-10-01T08:58:27,826 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:27,827 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-10-01T08:58:27,827 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:27,867 In file included from /usr/include/c++/12/algorithm:61, 2023-10-01T08:58:27,868 from interfaces/Python/RNA_wrap.cpp:4005: 2023-10-01T08:58:27,868 /usr/include/c++/12/bits/stl_algo.h: In function ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = back_insert_iterator > >; _UnaryOperation = double (*)(const double&)]’: 2023-10-01T08:58:27,869 /usr/include/c++/12/bits/stl_algo.h:4252:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:27,870 4252 | transform(_InputIterator __first, _InputIterator __last, 2023-10-01T08:58:27,871 | ^~~~~~~~~ 2023-10-01T08:58:27,871 /usr/include/c++/12/bits/stl_algo.h:4252:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:27,872 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:27,872 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-10-01T08:58:27,873 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(typename _Container::value_type&&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:743:22, 2023-10-01T08:58:27,873 inlined from ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = back_insert_iterator > >; _UnaryOperation = double (*)(const double&)]’ at /usr/include/c++/12/bits/stl_algo.h:4263:12: 2023-10-01T08:58:27,874 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:27,875 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-10-01T08:58:27,875 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:27,939 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:27,940 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-10-01T08:58:27,941 inlined from ‘std::vector >, std::allocator > > > pfl_fold_up(std::string, int, int, int)’ at interfaces/Python/RNA_wrap.cpp:10752:20: 2023-10-01T08:58:27,942 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:27,942 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-10-01T08:58:27,943 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:27,944 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:27,945 inlined from ‘std::vector >, std::allocator > > > pfl_fold_up(std::string, int, int, int)’ at interfaces/Python/RNA_wrap.cpp:10756:22: 2023-10-01T08:58:27,945 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:27,946 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:27,947 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:28,284 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:28,285 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-10-01T08:58:28,285 inlined from ‘std::vector > my_aln_conservation_col(std::vector, std::allocator > >, vrna_md_t*, unsigned int)’ at interfaces/Python/RNA_wrap.cpp:9459:31: 2023-10-01T08:58:28,286 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:28,287 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-10-01T08:58:28,287 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:28,658 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:28,658 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-10-01T08:58:28,659 inlined from ‘std::vector >, std::allocator > > > vrna_fold_compound_t_bpp(vrna_fold_compound_t*)’ at interfaces/Python/RNA_wrap.cpp:14687:37, 2023-10-01T08:58:28,660 inlined from ‘PyObject* _wrap_fold_compound_bpp(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:85199:40: 2023-10-01T08:58:28,661 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:28,661 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-10-01T08:58:28,662 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:29,034 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-01T08:58:29,034 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval4’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T08:58:29,035 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-10-01T08:58:29,036 | ^ 2023-10-01T08:58:29,042 interfaces/Python/RNA_wrap.cpp:85729:26: note: ‘retval4’ was declared here 2023-10-01T08:58:29,042 85729 | vrna_pbacktrack_mem_t *retval4 ; 2023-10-01T08:58:29,043 | ^~~~~~~ 2023-10-01T08:58:29,308 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-01T08:58:29,309 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval5’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T08:58:29,310 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-10-01T08:58:29,310 | ^ 2023-10-01T08:58:29,317 interfaces/Python/RNA_wrap.cpp:85814:26: note: ‘retval5’ was declared here 2023-10-01T08:58:29,317 85814 | vrna_pbacktrack_mem_t *retval5 ; 2023-10-01T08:58:29,318 | ^~~~~~~ 2023-10-01T08:58:30,304 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-01T08:58:30,305 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval3’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T08:58:30,306 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-10-01T08:58:30,307 | ^ 2023-10-01T08:58:30,312 interfaces/Python/RNA_wrap.cpp:85652:26: note: ‘retval3’ was declared here 2023-10-01T08:58:30,313 85652 | vrna_pbacktrack_mem_t *retval3 ; 2023-10-01T08:58:30,314 | ^~~~~~~ 2023-10-01T08:58:32,820 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:58:32,821 inlined from ‘std::vector > vrna_fold_compound_t_path_direct(vrna_fold_compound_t*, std::string, std::string, int, vrna_path_options_s*)’ at interfaces/Python/RNA_wrap.cpp:15127:24, 2023-10-01T08:58:32,822 inlined from ‘PyObject* _wrap_fold_compound_path_direct(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:87317:48: 2023-10-01T08:58:32,822 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:32,823 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:32,823 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:32,824 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:58:32,825 inlined from ‘std::vector > vrna_fold_compound_t_path_direct(vrna_fold_compound_t*, std::string, std::string, int, vrna_path_options_s*)’ at interfaces/Python/RNA_wrap.cpp:15136:24, 2023-10-01T08:58:32,826 inlined from ‘PyObject* _wrap_fold_compound_path_direct(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:87317:48: 2023-10-01T08:58:32,826 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:32,827 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:32,828 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:33,122 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:58:33,123 inlined from ‘std::vector > vrna_fold_compound_t_path_findpath(vrna_fold_compound_t*, std::string, std::string, int, int)’ at interfaces/Python/RNA_wrap.cpp:15107:24, 2023-10-01T08:58:33,124 inlined from ‘PyObject* _wrap_fold_compound_path_findpath(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:87242:50: 2023-10-01T08:58:33,124 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:33,125 1287 | _M_realloc_insert(end(), __x); 2023-10-01T08:58:33,126 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T08:58:44,464 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:44,465 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2023-10-01T08:58:44,466 inlined from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = SwigPySequence_Cont; Seq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5309:18, 2023-10-01T08:58:44,466 inlined from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, sequence**) [with Seq = std::vector >; T = double]’ at interfaces/Python/RNA_wrap.cpp:5331:12: 2023-10-01T08:58:44,467 /usr/include/c++/12/bits/vector.tcc:364:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:44,468 364 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-10-01T08:58:44,468 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:44,469 /usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:44,469 366 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-10-01T08:58:44,470 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:44,872 In function ‘int vrna_fold_compound_t_sc_set_up(vrna_fold_compound_t*, std::vector >, unsigned int)’, 2023-10-01T08:58:44,873 inlined from ‘PyObject* _wrap_fold_compound_sc_set_up(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:81317:51: 2023-10-01T08:58:44,873 interfaces/Python/RNA_wrap.cpp:14372:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:44,874 14372 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-10-01T08:58:44,875 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:45,294 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:45,295 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__erase__SWIG_0(std::vector >*, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:5807:167, 2023-10-01T08:58:45,295 inlined from ‘PyObject* _wrap_DoubleVector_erase__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:23627:54, 2023-10-01T08:58:45,296 inlined from ‘PyObject* _wrap_DoubleVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23713:48: 2023-10-01T08:58:45,297 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:45,297 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-01T08:58:45,298 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:45,299 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:45,299 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__erase__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:5808:206, 2023-10-01T08:58:45,300 inlined from ‘PyObject* _wrap_DoubleVector_erase__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:23683:54, 2023-10-01T08:58:45,300 inlined from ‘PyObject* _wrap_DoubleVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23730:50: 2023-10-01T08:58:45,301 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:45,302 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-01T08:58:45,302 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:45,577 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:45,578 inlined from ‘void swig::erase(Sequence*, const typename Sequence::iterator&) [with Sequence = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4628:15, 2023-10-01T08:58:45,579 inlined from ‘void std_vector_Sl_double_Sg____delitem____SWIG_0(std::vector >*, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:5745:18, 2023-10-01T08:58:45,579 inlined from ‘PyObject* _wrap_DoubleVector___delitem____SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:22669:53, 2023-10-01T08:58:45,580 inlined from ‘PyObject* _wrap_DoubleVector___delitem__(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:22889:54: 2023-10-01T08:58:45,581 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:45,581 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-01T08:58:45,582 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:45,723 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:45,724 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__insert__SWIG_0(std::vector >*, std::vector >::iterator, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:5809:212, 2023-10-01T08:58:45,725 inlined from ‘PyObject* _wrap_DoubleVector_insert__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:24125:55, 2023-10-01T08:58:45,725 inlined from ‘PyObject* _wrap_DoubleVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:24218:51: 2023-10-01T08:58:45,726 /usr/include/c++/12/bits/vector.tcc:157:26: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:45,727 157 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-10-01T08:58:45,728 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:45,728 /usr/include/c++/12/bits/vector.tcc:164:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:45,729 164 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-10-01T08:58:45,730 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:45,730 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:45,731 inlined from ‘void std_vector_Sl_double_Sg__insert__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::size_type, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:5810:213, 2023-10-01T08:58:45,732 inlined from ‘PyObject* _wrap_DoubleVector_insert__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:24184:46, 2023-10-01T08:58:45,733 inlined from ‘PyObject* _wrap_DoubleVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:24242:53: 2023-10-01T08:58:45,734 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:45,734 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2023-10-01T08:58:45,735 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:45,902 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-01T08:58:45,903 inlined from ‘PyObject* _wrap_DoubleVector_resize__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:24022:21, 2023-10-01T08:58:45,904 inlined from ‘PyObject* _wrap_DoubleVector_resize(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:24071:51: 2023-10-01T08:58:45,904 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:45,905 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2023-10-01T08:58:45,906 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:46,030 In function ‘int vrna_fold_compound_t_sc_add_stack__SWIG_1(vrna_fold_compound_t*, int, std::vector >, unsigned int)’, 2023-10-01T08:58:46,031 inlined from ‘PyObject* _wrap_fold_compound_sc_add_stack__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:81581:62: 2023-10-01T08:58:46,031 interfaces/Python/RNA_wrap.cpp:14409:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:46,032 14409 | transform(energies.begin(), energies.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-10-01T08:58:46,033 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:58:46,214 In function ‘int vrna_fold_compound_t_sc_set_stack__SWIG_0(vrna_fold_compound_t*, std::vector >, unsigned int)’, 2023-10-01T08:58:46,215 inlined from ‘PyObject* _wrap_fold_compound_sc_set_stack__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:81364:62: 2023-10-01T08:58:46,215 interfaces/Python/RNA_wrap.cpp:14377:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:58:46,216 14377 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-10-01T08:58:46,217 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:02,031 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:59:02,032 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2023-10-01T08:59:02,032 inlined from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = SwigPySequence_Cont; Seq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5309:18: 2023-10-01T08:59:02,033 /usr/include/c++/12/bits/vector.tcc:364:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:59:02,034 364 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-10-01T08:59:02,034 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:02,353 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:59:02,353 inlined from ‘std::vector >::iterator std_vector_Sl_duplex_list_t_Sg__erase__SWIG_0(std::vector >*, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:11500:195, 2023-10-01T08:59:02,354 inlined from ‘PyObject* _wrap_DuplexVector_erase__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:74982:61, 2023-10-01T08:59:02,355 inlined from ‘PyObject* _wrap_DuplexVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:75068:48: 2023-10-01T08:59:02,355 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:59:02,356 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-01T08:59:02,356 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:02,357 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:59:02,358 inlined from ‘std::vector >::iterator std_vector_Sl_duplex_list_t_Sg__erase__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:11501:241, 2023-10-01T08:59:02,358 inlined from ‘PyObject* _wrap_DuplexVector_erase__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:75038:61, 2023-10-01T08:59:02,359 inlined from ‘PyObject* _wrap_DuplexVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:75085:50: 2023-10-01T08:59:02,360 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:59:02,361 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-01T08:59:02,361 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:02,647 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:59:02,647 inlined from ‘void swig::erase(Sequence*, const typename Sequence::iterator&) [with Sequence = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4628:15, 2023-10-01T08:59:02,648 inlined from ‘void std_vector_Sl_duplex_list_t_Sg____delitem____SWIG_0(std::vector >*, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:11438:18, 2023-10-01T08:59:02,649 inlined from ‘PyObject* _wrap_DuplexVector___delitem____SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:74024:60, 2023-10-01T08:59:02,650 inlined from ‘PyObject* _wrap_DuplexVector___delitem__(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:74244:54: 2023-10-01T08:59:02,650 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:59:02,651 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-01T08:59:02,651 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:09,804 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’: 2023-10-01T08:59:09,805 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:59:09,805 523 | vector<_Tp, _Alloc>:: 2023-10-01T08:59:09,806 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:10,072 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:59:10,072 inlined from ‘PyObject* _wrap_DuplexVector_resize__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:75379:21, 2023-10-01T08:59:10,073 inlined from ‘PyObject* _wrap_DuplexVector_resize(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:75426:51: 2023-10-01T08:59:10,074 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:59:10,074 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2023-10-01T08:59:10,075 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:10,248 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:59:10,249 inlined from ‘std::vector >::iterator std_vector_Sl_duplex_list_t_Sg__insert__SWIG_0(std::vector >*, std::vector >::iterator, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:11502:247, 2023-10-01T08:59:10,249 inlined from ‘PyObject* _wrap_DuplexVector_insert__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:75481:62, 2023-10-01T08:59:10,250 inlined from ‘PyObject* _wrap_DuplexVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:75573:51: 2023-10-01T08:59:10,251 /usr/include/c++/12/bits/vector.tcc:157:26: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:59:10,251 157 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-10-01T08:59:10,252 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:10,253 /usr/include/c++/12/bits/vector.tcc:164:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:59:10,254 164 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-10-01T08:59:10,254 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:10,255 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2023-10-01T08:59:10,256 inlined from ‘void std_vector_Sl_duplex_list_t_Sg__insert__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::size_type, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:11503:248, 2023-10-01T08:59:10,256 inlined from ‘PyObject* _wrap_DuplexVector_insert__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:75541:53, 2023-10-01T08:59:10,257 inlined from ‘PyObject* _wrap_DuplexVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:75595:53: 2023-10-01T08:59:10,257 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:59:10,258 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2023-10-01T08:59:10,259 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:17,208 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {vrna_path_s}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-10-01T08:59:17,208 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-01T08:59:17,209 439 | vector<_Tp, _Alloc>:: 2023-10-01T08:59:17,210 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:17,298 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:59:17,299 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2023-10-01T08:59:17,299 inlined from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = SwigPySequence_Cont; Seq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5309:18, 2023-10-01T08:59:17,300 inlined from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, sequence**) [with Seq = std::vector >; T = vrna_path_s]’ at interfaces/Python/RNA_wrap.cpp:5331:12: 2023-10-01T08:59:17,301 /usr/include/c++/12/bits/vector.tcc:364:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:59:17,302 364 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-10-01T08:59:17,302 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:17,303 /usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:59:17,304 366 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-10-01T08:59:17,305 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:17,478 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:59:17,479 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__insert__SWIG_0(std::vector >*, std::vector >::iterator, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6915:237, 2023-10-01T08:59:17,480 inlined from ‘PyObject* _wrap_PathVector_insert__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:43274:60, 2023-10-01T08:59:17,481 inlined from ‘PyObject* _wrap_PathVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:43366:49: 2023-10-01T08:59:17,481 /usr/include/c++/12/bits/vector.tcc:157:26: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:59:17,482 157 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-10-01T08:59:17,482 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:17,483 /usr/include/c++/12/bits/vector.tcc:164:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:59:17,484 164 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-10-01T08:59:17,484 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:17,485 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:59:17,485 inlined from ‘void std_vector_Sl_vrna_path_t_Sg__insert__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::size_type, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6916:238, 2023-10-01T08:59:17,486 inlined from ‘PyObject* _wrap_PathVector_insert__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:43334:51, 2023-10-01T08:59:17,487 inlined from ‘PyObject* _wrap_PathVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:43388:51: 2023-10-01T08:59:17,488 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:59:17,488 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2023-10-01T08:59:17,489 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:17,676 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:59:17,677 inlined from ‘PyObject* _wrap_PathVector_resize__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:43172:21, 2023-10-01T08:59:17,678 inlined from ‘PyObject* _wrap_PathVector_resize(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:43219:49: 2023-10-01T08:59:17,678 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:59:17,679 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2023-10-01T08:59:17,680 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:17,804 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:59:17,805 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__erase__SWIG_0(std::vector >*, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:6913:187, 2023-10-01T08:59:17,806 inlined from ‘PyObject* _wrap_PathVector_erase__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:42775:59, 2023-10-01T08:59:17,806 inlined from ‘PyObject* _wrap_PathVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42861:46: 2023-10-01T08:59:17,807 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:59:17,807 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-01T08:59:17,808 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:17,809 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:59:17,809 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__erase__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:6914:231, 2023-10-01T08:59:17,810 inlined from ‘PyObject* _wrap_PathVector_erase__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:42831:59, 2023-10-01T08:59:17,810 inlined from ‘PyObject* _wrap_PathVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42878:48: 2023-10-01T08:59:17,811 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:59:17,812 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-01T08:59:17,812 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:18,095 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-10-01T08:59:18,096 inlined from ‘void swig::erase(Sequence*, const typename Sequence::iterator&) [with Sequence = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4628:15, 2023-10-01T08:59:18,096 inlined from ‘void std_vector_Sl_vrna_path_t_Sg____delitem____SWIG_0(std::vector >*, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:6851:18, 2023-10-01T08:59:18,097 inlined from ‘PyObject* _wrap_PathVector___delitem____SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:41817:58, 2023-10-01T08:59:18,098 inlined from ‘PyObject* _wrap_PathVector___delitem__(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42037:52: 2023-10-01T08:59:18,099 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-01T08:59:18,099 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-01T08:59:18,100 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T08:59:44,430 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/2Dfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/2Dfold.o -fopenmp 2023-10-01T08:59:44,681 src/ViennaRNA/2Dfold.c: In function ‘vrna_mfe_TwoD’: 2023-10-01T08:59:44,682 src/ViennaRNA/2Dfold.c:325:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,683 325 | if ((d1 >= ((md->circ) ? matrices->k_min_Fc : matrices->k_min_F5[length])) 2023-10-01T08:59:44,683 | ^~ 2023-10-01T08:59:44,684 src/ViennaRNA/2Dfold.c:326:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,684 326 | && (d1 <= ((md->circ) ? matrices->k_max_Fc : matrices->k_max_F5[length]))) { 2023-10-01T08:59:44,685 | ^~ 2023-10-01T08:59:44,685 src/ViennaRNA/2Dfold.c:328:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,686 328 | d2 <= ((md->circ) ? matrices->l_max_Fc[d1] : matrices->l_max_F5[length][d1]); 2023-10-01T08:59:44,686 | ^~ 2023-10-01T08:59:44,688 src/ViennaRNA/2Dfold.c: In function ‘vrna_backtrack5_TwoD’: 2023-10-01T08:59:44,689 src/ViennaRNA/2Dfold.c:400:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,689 400 | if (j < vc->params->model_details.min_loop_size + 2) 2023-10-01T08:59:44,690 | ^ 2023-10-01T08:59:44,694 src/ViennaRNA/2Dfold.c: In function ‘mfe_linear’: 2023-10-01T08:59:44,695 src/ViennaRNA/2Dfold.c:596:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,696 596 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2023-10-01T08:59:44,696 | ^~ 2023-10-01T08:59:44,697 src/ViennaRNA/2Dfold.c:596:64: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,698 596 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2023-10-01T08:59:44,699 | ^~ 2023-10-01T08:59:44,701 src/ViennaRNA/2Dfold.c:712:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,701 712 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2023-10-01T08:59:44,702 | ^~ 2023-10-01T08:59:44,703 src/ViennaRNA/2Dfold.c:712:80: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,704 712 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2023-10-01T08:59:44,704 | ^~ 2023-10-01T08:59:44,711 src/ViennaRNA/2Dfold.c:1032:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,712 1032 | if (j > turn + 2) { 2023-10-01T08:59:44,712 | ^ 2023-10-01T08:59:44,726 src/ViennaRNA/2Dfold.c:1402:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,727 1402 | for (cnt1 = seq_length; cnt1 >= seq_length - turn - 1; cnt1--) { 2023-10-01T08:59:44,728 | ^~ 2023-10-01T08:59:44,734 src/ViennaRNA/2Dfold.c: In function ‘backtrack_f5’: 2023-10-01T08:59:44,736 src/ViennaRNA/2Dfold.c:1622:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,736 1622 | if (j < turn + 2) 2023-10-01T08:59:44,737 | ^ 2023-10-01T08:59:44,738 src/ViennaRNA/2Dfold.c:1648:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,739 1648 | } else if ((k >= da) && (l >= db)) { 2023-10-01T08:59:44,739 | ^~ 2023-10-01T08:59:44,740 src/ViennaRNA/2Dfold.c:1648:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,740 1648 | } else if ((k >= da) && (l >= db)) { 2023-10-01T08:59:44,741 | ^~ 2023-10-01T08:59:44,741 src/ViennaRNA/2Dfold.c:1650:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,742 1650 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2023-10-01T08:59:44,742 | ^~ 2023-10-01T08:59:44,743 src/ViennaRNA/2Dfold.c:1650:50: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,744 1650 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2023-10-01T08:59:44,744 | ^~ 2023-10-01T08:59:44,745 src/ViennaRNA/2Dfold.c:1651:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,745 1651 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2023-10-01T08:59:44,746 | ^~ 2023-10-01T08:59:44,747 src/ViennaRNA/2Dfold.c:1651:60: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,747 1651 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2023-10-01T08:59:44,748 | ^~ 2023-10-01T08:59:44,753 src/ViennaRNA/2Dfold.c:1756:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,753 1756 | } else if ((k >= d1a) && (l >= d1b)) { 2023-10-01T08:59:44,754 | ^~ 2023-10-01T08:59:44,755 src/ViennaRNA/2Dfold.c:1756:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,756 1756 | } else if ((k >= d1a) && (l >= d1b)) { 2023-10-01T08:59:44,756 | ^~ 2023-10-01T08:59:44,757 In file included from src/ViennaRNA/2Dfold.c:17: 2023-10-01T08:59:44,757 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,758 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:44,758 | ^ 2023-10-01T08:59:44,759 src/ViennaRNA/2Dfold.c:1757:23: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:44,760 1757 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2023-10-01T08:59:44,760 | ^~~~ 2023-10-01T08:59:44,761 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:44,762 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:44,762 | ^~~ 2023-10-01T08:59:44,763 src/ViennaRNA/2Dfold.c:1757:23: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:44,764 1757 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2023-10-01T08:59:44,765 | ^~~~ 2023-10-01T08:59:44,765 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,766 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:44,766 | ^ 2023-10-01T08:59:44,767 src/ViennaRNA/2Dfold.c:1760:25: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:44,767 1760 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2023-10-01T08:59:44,767 | ^~~~ 2023-10-01T08:59:44,768 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:44,768 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:44,769 | ^~~ 2023-10-01T08:59:44,769 src/ViennaRNA/2Dfold.c:1760:25: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:44,770 1760 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2023-10-01T08:59:44,770 | ^~~~ 2023-10-01T08:59:44,771 src/ViennaRNA/2Dfold.c: In function ‘backtrack_c’: 2023-10-01T08:59:44,771 src/ViennaRNA/2Dfold.c:1864:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,772 1864 | if ((unsigned int)base_d1 == k) 2023-10-01T08:59:44,772 | ^~ 2023-10-01T08:59:44,773 src/ViennaRNA/2Dfold.c:1865:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,774 1865 | if ((unsigned int)base_d2 == l) 2023-10-01T08:59:44,774 | ^~ 2023-10-01T08:59:44,775 src/ViennaRNA/2Dfold.c:1910:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,776 1910 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2023-10-01T08:59:44,777 | ^ 2023-10-01T08:59:44,777 src/ViennaRNA/2Dfold.c:1910:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,778 1910 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2023-10-01T08:59:44,779 | ^ 2023-10-01T08:59:44,782 src/ViennaRNA/2Dfold.c:2018:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,782 2018 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2023-10-01T08:59:44,783 | ^ 2023-10-01T08:59:44,784 src/ViennaRNA/2Dfold.c:2018:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,784 2018 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2023-10-01T08:59:44,785 | ^ 2023-10-01T08:59:44,794 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m’: 2023-10-01T08:59:44,796 src/ViennaRNA/2Dfold.c:2293:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,797 2293 | if (d1 <= k && d2 <= l) { 2023-10-01T08:59:44,797 | ^~ 2023-10-01T08:59:44,798 src/ViennaRNA/2Dfold.c:2293:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,799 2293 | if (d1 <= k && d2 <= l) { 2023-10-01T08:59:44,800 | ^~ 2023-10-01T08:59:44,800 src/ViennaRNA/2Dfold.c:2294:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,801 2294 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2023-10-01T08:59:44,801 | ^~ 2023-10-01T08:59:44,803 src/ViennaRNA/2Dfold.c:2294:63: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,803 2294 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2023-10-01T08:59:44,804 | ^~ 2023-10-01T08:59:44,805 src/ViennaRNA/2Dfold.c:2295:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,806 2295 | if ((l - d2 >= l_min_M[my_iindx[i + 1] - j][k - d1]) && 2023-10-01T08:59:44,806 | ^~ 2023-10-01T08:59:44,807 src/ViennaRNA/2Dfold.c:2296:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,808 2296 | (l - d2 <= l_max_M[my_iindx[i + 1] - j][k - d1])) { 2023-10-01T08:59:44,808 | ^~ 2023-10-01T08:59:44,810 src/ViennaRNA/2Dfold.c:2310:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,810 2310 | if (d1 <= k && d2 <= l) { 2023-10-01T08:59:44,811 | ^~ 2023-10-01T08:59:44,812 src/ViennaRNA/2Dfold.c:2310:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,813 2310 | if (d1 <= k && d2 <= l) { 2023-10-01T08:59:44,813 | ^~ 2023-10-01T08:59:44,814 src/ViennaRNA/2Dfold.c:2311:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,815 2311 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2023-10-01T08:59:44,816 | ^~ 2023-10-01T08:59:44,817 src/ViennaRNA/2Dfold.c:2311:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,817 2311 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2023-10-01T08:59:44,818 | ^~ 2023-10-01T08:59:44,819 src/ViennaRNA/2Dfold.c:2312:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,820 2312 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2023-10-01T08:59:44,820 | ^~ 2023-10-01T08:59:44,821 src/ViennaRNA/2Dfold.c:2312:62: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,822 2312 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2023-10-01T08:59:44,823 | ^~ 2023-10-01T08:59:44,827 src/ViennaRNA/2Dfold.c:2364:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,828 2364 | if (d1 <= k && d2 <= l) { 2023-10-01T08:59:44,828 | ^~ 2023-10-01T08:59:44,829 src/ViennaRNA/2Dfold.c:2364:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,830 2364 | if (d1 <= k && d2 <= l) { 2023-10-01T08:59:44,831 | ^~ 2023-10-01T08:59:44,832 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,832 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:44,833 | ^ 2023-10-01T08:59:44,833 src/ViennaRNA/2Dfold.c:2365:55: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:44,834 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-10-01T08:59:44,834 | ^~~~ 2023-10-01T08:59:44,835 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:44,835 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:44,835 | ^~~ 2023-10-01T08:59:44,836 src/ViennaRNA/2Dfold.c:2365:55: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:44,836 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-10-01T08:59:44,837 | ^~~~ 2023-10-01T08:59:44,837 src/ViennaRNA/2Dfold.c:2365:52: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,838 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-10-01T08:59:44,838 | ^~ 2023-10-01T08:59:44,839 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,840 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:44,840 | ^ 2023-10-01T08:59:44,841 src/ViennaRNA/2Dfold.c:2368:24: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:44,842 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-10-01T08:59:44,842 | ^~~~ 2023-10-01T08:59:44,843 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:44,844 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:44,844 | ^~~ 2023-10-01T08:59:44,845 src/ViennaRNA/2Dfold.c:2368:24: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:44,846 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-10-01T08:59:44,846 | ^~~~ 2023-10-01T08:59:44,847 src/ViennaRNA/2Dfold.c:2368:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,847 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-10-01T08:59:44,848 | ^~ 2023-10-01T08:59:44,848 src/ViennaRNA/2Dfold.c:2369:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,849 2369 | if ((k - d1 - cnt1 >= k_min_C[my_iindx[u + 1] - j]) && 2023-10-01T08:59:44,850 | ^~ 2023-10-01T08:59:44,850 src/ViennaRNA/2Dfold.c:2370:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,851 2370 | (k - d1 - cnt1 <= k_max_C[my_iindx[u + 1] - j])) { 2023-10-01T08:59:44,852 | ^~ 2023-10-01T08:59:44,852 src/ViennaRNA/2Dfold.c:2371:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,853 2371 | if ((l - d2 - cnt2 >= l_min_C[my_iindx[u + 1] - j][k - d1 - cnt1]) && 2023-10-01T08:59:44,853 | ^~ 2023-10-01T08:59:44,854 src/ViennaRNA/2Dfold.c:2372:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,854 2372 | (l - d2 - cnt2 <= l_max_C[my_iindx[u + 1] - j][k - d1 - cnt1])) { 2023-10-01T08:59:44,855 | ^~ 2023-10-01T08:59:44,857 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m1’: 2023-10-01T08:59:44,860 src/ViennaRNA/2Dfold.c:2492:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,860 2492 | if (d1 <= k && d2 <= l) { 2023-10-01T08:59:44,861 | ^~ 2023-10-01T08:59:44,862 src/ViennaRNA/2Dfold.c:2492:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,863 2492 | if (d1 <= k && d2 <= l) { 2023-10-01T08:59:44,863 | ^~ 2023-10-01T08:59:44,864 src/ViennaRNA/2Dfold.c:2493:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,865 2493 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2023-10-01T08:59:44,865 | ^~ 2023-10-01T08:59:44,867 src/ViennaRNA/2Dfold.c:2493:51: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,868 2493 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2023-10-01T08:59:44,868 | ^~ 2023-10-01T08:59:44,869 src/ViennaRNA/2Dfold.c:2494:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,870 2494 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2023-10-01T08:59:44,871 | ^~ 2023-10-01T08:59:44,872 src/ViennaRNA/2Dfold.c:2494:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,872 2494 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2023-10-01T08:59:44,873 | ^~ 2023-10-01T08:59:44,875 src/ViennaRNA/2Dfold.c: In function ‘backtrack_fc’: 2023-10-01T08:59:44,878 src/ViennaRNA/2Dfold.c:2614:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,878 2614 | if (u < turn) 2023-10-01T08:59:44,879 | ^ 2023-10-01T08:59:44,883 src/ViennaRNA/2Dfold.c:2668:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,883 2668 | if (u < turn) 2023-10-01T08:59:44,884 | ^ 2023-10-01T08:59:44,892 src/ViennaRNA/2Dfold.c:2778:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,892 2778 | if (seq_length > 2 * turn) { 2023-10-01T08:59:44,893 | ^ 2023-10-01T08:59:44,898 src/ViennaRNA/2Dfold.c:2863:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,899 2863 | if ((k == referenceBPs1[my_iindx[1] - seq_length]) && 2023-10-01T08:59:44,900 | ^~ 2023-10-01T08:59:44,901 src/ViennaRNA/2Dfold.c:2864:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,901 2864 | (l == referenceBPs2[my_iindx[1] - seq_length])) 2023-10-01T08:59:44,901 | ^~ 2023-10-01T08:59:44,905 src/ViennaRNA/2Dfold.c:2881:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,906 2881 | if (u < turn) 2023-10-01T08:59:44,906 | ^ 2023-10-01T08:59:44,910 src/ViennaRNA/2Dfold.c:2904:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,910 2904 | if ((k >= d1) && (l >= d2)) { 2023-10-01T08:59:44,911 | ^~ 2023-10-01T08:59:44,913 src/ViennaRNA/2Dfold.c:2904:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,913 2904 | if ((k >= d1) && (l >= d2)) { 2023-10-01T08:59:44,914 | ^~ 2023-10-01T08:59:44,915 src/ViennaRNA/2Dfold.c:2905:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,916 2905 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2023-10-01T08:59:44,916 | ^~ 2023-10-01T08:59:44,918 src/ViennaRNA/2Dfold.c:2905:56: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,919 2905 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2023-10-01T08:59:44,920 | ^~ 2023-10-01T08:59:44,921 src/ViennaRNA/2Dfold.c:2906:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,922 2906 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2023-10-01T08:59:44,922 | ^~ 2023-10-01T08:59:44,924 src/ViennaRNA/2Dfold.c:2906:66: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,925 2906 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2023-10-01T08:59:44,926 | ^~ 2023-10-01T08:59:44,928 src/ViennaRNA/2Dfold.c:2932:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,929 2932 | if (u < turn) 2023-10-01T08:59:44,929 | ^ 2023-10-01T08:59:44,936 src/ViennaRNA/2Dfold.c:2975:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,936 2975 | if ((k >= d1) && (l >= d2)) { 2023-10-01T08:59:44,937 | ^~ 2023-10-01T08:59:44,938 src/ViennaRNA/2Dfold.c:2975:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,939 2975 | if ((k >= d1) && (l >= d2)) { 2023-10-01T08:59:44,940 | ^~ 2023-10-01T08:59:44,941 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,942 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:44,943 | ^ 2023-10-01T08:59:44,944 src/ViennaRNA/2Dfold.c:2976:54: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:44,944 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-10-01T08:59:44,944 | ^~~~ 2023-10-01T08:59:44,945 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:44,945 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:44,946 | ^~~ 2023-10-01T08:59:44,946 src/ViennaRNA/2Dfold.c:2976:54: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:44,947 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-10-01T08:59:44,947 | ^~~~ 2023-10-01T08:59:44,948 src/ViennaRNA/2Dfold.c:2976:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,948 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-10-01T08:59:44,949 | ^~ 2023-10-01T08:59:44,950 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,951 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:44,952 | ^ 2023-10-01T08:59:44,952 src/ViennaRNA/2Dfold.c:2977:62: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:44,953 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-10-01T08:59:44,953 | ^~~~ 2023-10-01T08:59:44,954 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:44,954 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:44,955 | ^~~ 2023-10-01T08:59:44,956 src/ViennaRNA/2Dfold.c:2977:62: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:44,956 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-10-01T08:59:44,957 | ^~~~ 2023-10-01T08:59:44,958 src/ViennaRNA/2Dfold.c:2977:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,958 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-10-01T08:59:44,959 | ^~ 2023-10-01T08:59:44,960 src/ViennaRNA/2Dfold.c:2979:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,960 2979 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2023-10-01T08:59:44,961 | ^~ 2023-10-01T08:59:44,963 src/ViennaRNA/2Dfold.c:2979:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,964 2979 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2023-10-01T08:59:44,965 | ^~ 2023-10-01T08:59:44,966 src/ViennaRNA/2Dfold.c:2980:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,967 2980 | if ((l - d2 - cnt2 >= l_min_C[pq][k - d1 - cnt1]) && 2023-10-01T08:59:44,968 | ^~ 2023-10-01T08:59:44,969 src/ViennaRNA/2Dfold.c:2981:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,969 2981 | (l - d2 - cnt2 <= l_max_C[pq][k - d1 - cnt1])) { 2023-10-01T08:59:44,970 | ^~ 2023-10-01T08:59:44,972 src/ViennaRNA/2Dfold.c:3002:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:44,973 3002 | if (seq_length > 2 * turn) { 2023-10-01T08:59:44,973 | ^ 2023-10-01T08:59:44,976 src/ViennaRNA/2Dfold.c:3018:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,977 3018 | if ((k >= d1) && (l >= d2)) { 2023-10-01T08:59:44,977 | ^~ 2023-10-01T08:59:44,979 src/ViennaRNA/2Dfold.c:3018:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,980 3018 | if ((k >= d1) && (l >= d2)) { 2023-10-01T08:59:44,980 | ^~ 2023-10-01T08:59:44,982 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,983 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:44,983 | ^ 2023-10-01T08:59:44,984 src/ViennaRNA/2Dfold.c:3020:58: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:44,985 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-10-01T08:59:44,985 | ^~~~ 2023-10-01T08:59:44,986 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:44,987 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:44,987 | ^~~ 2023-10-01T08:59:44,988 src/ViennaRNA/2Dfold.c:3020:58: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:44,988 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-10-01T08:59:44,989 | ^~~~ 2023-10-01T08:59:44,990 src/ViennaRNA/2Dfold.c:3020:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,990 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-10-01T08:59:44,991 | ^~ 2023-10-01T08:59:44,992 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,992 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:44,993 | ^ 2023-10-01T08:59:44,994 src/ViennaRNA/2Dfold.c:3023:32: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:44,994 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-10-01T08:59:44,995 | ^~~~ 2023-10-01T08:59:44,996 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:44,996 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:44,997 | ^~~ 2023-10-01T08:59:44,997 src/ViennaRNA/2Dfold.c:3023:32: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:44,998 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-10-01T08:59:44,998 | ^~~~ 2023-10-01T08:59:44,999 src/ViennaRNA/2Dfold.c:3023:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:44,999 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-10-01T08:59:45,000 | ^~ 2023-10-01T08:59:45,001 src/ViennaRNA/2Dfold.c:3024:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:45,002 3024 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2023-10-01T08:59:45,002 | ^~ 2023-10-01T08:59:45,004 src/ViennaRNA/2Dfold.c:3024:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:45,005 3024 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2023-10-01T08:59:45,005 | ^~ 2023-10-01T08:59:45,007 src/ViennaRNA/2Dfold.c:3025:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:45,008 3025 | if ((l - d2 - cnt2 >= l_min_M2[i + 1][k - d1 - cnt1]) && 2023-10-01T08:59:45,008 | ^~ 2023-10-01T08:59:45,010 src/ViennaRNA/2Dfold.c:3026:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:45,011 3026 | (l - d2 - cnt2 <= l_max_M2[i + 1][k - d1 - cnt1])) { 2023-10-01T08:59:45,012 | ^~ 2023-10-01T08:59:45,018 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m2’: 2023-10-01T08:59:45,020 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:45,021 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:45,022 | ^ 2023-10-01T08:59:45,022 src/ViennaRNA/2Dfold.c:3173:41: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:45,023 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-10-01T08:59:45,023 | ^~~~ 2023-10-01T08:59:45,024 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:45,025 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:45,025 | ^~~ 2023-10-01T08:59:45,026 src/ViennaRNA/2Dfold.c:3173:41: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:45,026 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-10-01T08:59:45,027 | ^~~~ 2023-10-01T08:59:45,027 src/ViennaRNA/2Dfold.c:3173:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:45,028 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-10-01T08:59:45,029 | ^~ 2023-10-01T08:59:45,030 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:45,031 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:45,032 | ^ 2023-10-01T08:59:45,032 src/ViennaRNA/2Dfold.c:3174:49: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:45,032 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-10-01T08:59:45,033 | ^~~~ 2023-10-01T08:59:45,034 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:45,034 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:45,035 | ^~~ 2023-10-01T08:59:45,035 src/ViennaRNA/2Dfold.c:3174:49: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:45,035 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-10-01T08:59:45,036 | ^~~~ 2023-10-01T08:59:45,037 src/ViennaRNA/2Dfold.c:3174:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:45,037 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-10-01T08:59:45,038 | ^~ 2023-10-01T08:59:45,040 src/ViennaRNA/2Dfold.c:3175:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:45,040 3175 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2023-10-01T08:59:45,041 | ^~ 2023-10-01T08:59:45,043 src/ViennaRNA/2Dfold.c:3175:65: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:45,044 3175 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2023-10-01T08:59:45,044 | ^~ 2023-10-01T08:59:45,046 src/ViennaRNA/2Dfold.c:3176:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:45,047 3176 | if ((l - d2 - cnt2 >= l_min_M1[j3][k - d1 - cnt1]) && 2023-10-01T08:59:45,047 | ^~ 2023-10-01T08:59:45,049 src/ViennaRNA/2Dfold.c:3177:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:45,050 3177 | (l - d2 - cnt2 <= l_max_M1[j3][k - d1 - cnt1])) { 2023-10-01T08:59:45,050 | ^~ 2023-10-01T08:59:45,059 src/ViennaRNA/2Dfold.c: In function ‘mfe_circ’: 2023-10-01T08:59:45,062 src/ViennaRNA/2Dfold.c:3557:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:45,063 3557 | if (u < turn) 2023-10-01T08:59:45,064 | ^ 2023-10-01T08:59:45,071 src/ViennaRNA/2Dfold.c:3631:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:45,072 3631 | if (u < turn) 2023-10-01T08:59:45,073 | ^ 2023-10-01T08:59:45,087 src/ViennaRNA/2Dfold.c:3796:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:45,088 3796 | if (seq_length > 2 * turn) { 2023-10-01T08:59:45,089 | ^ 2023-10-01T08:59:55,654 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/2Dpfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/2Dpfold.o -fopenmp 2023-10-01T08:59:55,891 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear’: 2023-10-01T08:59:55,892 src/ViennaRNA/2Dpfold.c:431:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:55,892 431 | for (i = (j > turn ? (j - turn) : 1); i <= j; i++) { 2023-10-01T08:59:55,893 | ^ 2023-10-01T08:59:55,897 src/ViennaRNA/2Dpfold.c:583:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,898 583 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-01T08:59:55,898 | ^~ 2023-10-01T08:59:55,898 src/ViennaRNA/2Dpfold.c:583:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,899 583 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-01T08:59:55,900 | ^~ 2023-10-01T08:59:55,904 src/ViennaRNA/2Dpfold.c:666:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,904 666 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-10-01T08:59:55,905 | ^~ 2023-10-01T08:59:55,906 src/ViennaRNA/2Dpfold.c:666:78: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,906 666 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-10-01T08:59:55,907 | ^~ 2023-10-01T08:59:55,910 src/ViennaRNA/2Dpfold.c:796:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,911 796 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-01T08:59:55,912 | ^~ 2023-10-01T08:59:55,912 src/ViennaRNA/2Dpfold.c:796:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,913 796 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-01T08:59:55,914 | ^~ 2023-10-01T08:59:55,916 src/ViennaRNA/2Dpfold.c:828:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,916 828 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-01T08:59:55,917 | ^~ 2023-10-01T08:59:55,917 src/ViennaRNA/2Dpfold.c:828:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,918 828 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-01T08:59:55,919 | ^~ 2023-10-01T08:59:55,923 src/ViennaRNA/2Dpfold.c:952:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,924 952 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-01T08:59:55,925 | ^~ 2023-10-01T08:59:55,926 src/ViennaRNA/2Dpfold.c:952:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,926 952 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-01T08:59:55,926 | ^~ 2023-10-01T08:59:55,929 src/ViennaRNA/2Dpfold.c:991:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,930 991 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-10-01T08:59:55,930 | ^~ 2023-10-01T08:59:55,931 src/ViennaRNA/2Dpfold.c:991:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,931 991 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-10-01T08:59:55,932 | ^~ 2023-10-01T08:59:55,936 src/ViennaRNA/2Dpfold.c:1121:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,937 1121 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-01T08:59:55,937 | ^~ 2023-10-01T08:59:55,938 src/ViennaRNA/2Dpfold.c:1121:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,938 1121 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-01T08:59:55,939 | ^~ 2023-10-01T08:59:55,944 src/ViennaRNA/2Dpfold.c:1203:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,945 1203 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-10-01T08:59:55,945 | ^~ 2023-10-01T08:59:55,946 src/ViennaRNA/2Dpfold.c:1203:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,946 1203 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-10-01T08:59:55,947 | ^~ 2023-10-01T08:59:55,955 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_circ’: 2023-10-01T08:59:55,957 src/ViennaRNA/2Dpfold.c:1631:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:55,958 1631 | if (u < turn) 2023-10-01T08:59:55,958 | ^ 2023-10-01T08:59:55,969 src/ViennaRNA/2Dpfold.c:1849:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:55,970 1849 | if (seq_length > 2 * turn - 3) { 2023-10-01T08:59:55,970 | ^ 2023-10-01T08:59:55,987 src/ViennaRNA/2Dpfold.c: In function ‘vrna_pbacktrack5_TwoD’: 2023-10-01T08:59:55,989 src/ViennaRNA/2Dpfold.c:2300:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,990 2300 | if ((d1 == referenceBPs1[sn]) 2023-10-01T08:59:55,990 | ^~ 2023-10-01T08:59:55,992 src/ViennaRNA/2Dpfold.c:2301:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,993 2301 | && (d2 == referenceBPs2[sn])) { 2023-10-01T08:59:55,993 | ^~ 2023-10-01T08:59:55,995 src/ViennaRNA/2Dpfold.c:2312:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,996 2312 | if (d1 >= da && d2 >= db) { 2023-10-01T08:59:55,997 | ^~ 2023-10-01T08:59:55,998 src/ViennaRNA/2Dpfold.c:2312:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:55,999 2312 | if (d1 >= da && d2 >= db) { 2023-10-01T08:59:55,999 | ^~ 2023-10-01T08:59:56,001 src/ViennaRNA/2Dpfold.c:2314:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,002 2314 | (d1 - da >= k_min_Q[my_iindx[i + 1] - length]) 2023-10-01T08:59:56,002 | ^~ 2023-10-01T08:59:56,004 src/ViennaRNA/2Dpfold.c:2315:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,005 2315 | && (d1 - da <= k_max_Q[my_iindx[i + 1] - length])) { 2023-10-01T08:59:56,005 | ^~ 2023-10-01T08:59:56,007 src/ViennaRNA/2Dpfold.c:2317:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,007 2317 | (d2 - db >= l_min_Q[my_iindx[i + 1] - length][d1 - da]) 2023-10-01T08:59:56,008 | ^~ 2023-10-01T08:59:56,009 src/ViennaRNA/2Dpfold.c:2318:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,010 2318 | && (d2 - db <= l_max_Q[my_iindx[i + 1] - length][d1 - da])) 2023-10-01T08:59:56,010 | ^~ 2023-10-01T08:59:56,013 src/ViennaRNA/2Dpfold.c:2346:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,014 2346 | if ((d1 >= da) 2023-10-01T08:59:56,015 | ^~ 2023-10-01T08:59:56,015 src/ViennaRNA/2Dpfold.c:2347:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,016 2347 | && (d2 >= db) 2023-10-01T08:59:56,017 | ^~ 2023-10-01T08:59:56,018 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-10-01T08:59:56,019 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,020 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:56,020 | ^ 2023-10-01T08:59:56,021 src/ViennaRNA/2Dpfold.c:2351:26: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:56,021 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-10-01T08:59:56,022 | ^~~~ 2023-10-01T08:59:56,022 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:56,023 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:56,023 | ^~~ 2023-10-01T08:59:56,024 src/ViennaRNA/2Dpfold.c:2351:26: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:56,025 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-10-01T08:59:56,025 | ^~~~ 2023-10-01T08:59:56,026 src/ViennaRNA/2Dpfold.c:2351:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,027 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-10-01T08:59:56,027 | ^~ 2023-10-01T08:59:56,028 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,029 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:56,029 | ^ 2023-10-01T08:59:56,029 src/ViennaRNA/2Dpfold.c:2354:28: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:56,030 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-10-01T08:59:56,030 | ^~~~ 2023-10-01T08:59:56,031 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:56,031 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:56,032 | ^~~ 2023-10-01T08:59:56,032 src/ViennaRNA/2Dpfold.c:2354:28: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:56,033 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-10-01T08:59:56,033 | ^~~~ 2023-10-01T08:59:56,033 src/ViennaRNA/2Dpfold.c:2354:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,034 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-10-01T08:59:56,034 | ^~ 2023-10-01T08:59:56,035 src/ViennaRNA/2Dpfold.c:2356:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,035 2356 | if ((d1 - da - cnt1 >= k_min_Q[my_iindx[j + 1] - length]) 2023-10-01T08:59:56,036 | ^~ 2023-10-01T08:59:56,036 src/ViennaRNA/2Dpfold.c:2357:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,037 2357 | && (d1 - da - cnt1 <= k_max_Q[my_iindx[j + 1] - length])) { 2023-10-01T08:59:56,038 | ^~ 2023-10-01T08:59:56,039 src/ViennaRNA/2Dpfold.c:2358:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,040 2358 | if ((d2 - db - cnt2 >= l_min_Q[my_iindx[j + 1] - length][d1 - da - cnt1]) 2023-10-01T08:59:56,040 | ^~ 2023-10-01T08:59:56,041 src/ViennaRNA/2Dpfold.c:2359:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,042 2359 | && (d2 - db - cnt2 <= l_max_Q[my_iindx[j + 1] - length][d1 - da - cnt1])) { 2023-10-01T08:59:56,043 | ^~ 2023-10-01T08:59:56,044 src/ViennaRNA/2Dpfold.c:2383:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,045 2383 | if (d1 >= da && d2 >= db) { 2023-10-01T08:59:56,046 | ^~ 2023-10-01T08:59:56,047 src/ViennaRNA/2Dpfold.c:2383:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,048 2383 | if (d1 >= da && d2 >= db) { 2023-10-01T08:59:56,048 | ^~ 2023-10-01T08:59:56,051 src/ViennaRNA/2Dpfold.c: In function ‘pbacktrack_circ’: 2023-10-01T08:59:56,054 src/ViennaRNA/2Dpfold.c:2542:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,054 2542 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2023-10-01T08:59:56,055 | ^~ 2023-10-01T08:59:56,056 src/ViennaRNA/2Dpfold.c:2542:83: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,057 2542 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2023-10-01T08:59:56,057 | ^~ 2023-10-01T08:59:56,064 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcH’: 2023-10-01T08:59:56,067 src/ViennaRNA/2Dpfold.c:2746:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,067 2746 | if (((cnt1 + da) == d1) 2023-10-01T08:59:56,068 | ^~ 2023-10-01T08:59:56,069 src/ViennaRNA/2Dpfold.c:2747:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,070 2747 | && ((cnt2 + db) == d2)) { 2023-10-01T08:59:56,070 | ^~ 2023-10-01T08:59:56,084 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcI’: 2023-10-01T08:59:56,086 src/ViennaRNA/2Dpfold.c:3025:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,087 3025 | if (((cnt1 + cnt3 + da) == d1) 2023-10-01T08:59:56,087 | ^~ 2023-10-01T08:59:56,089 src/ViennaRNA/2Dpfold.c:3026:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,090 3026 | && ((cnt2 + cnt4 + db) == d2)) { 2023-10-01T08:59:56,090 | ^~ 2023-10-01T08:59:56,094 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcM’: 2023-10-01T08:59:56,097 src/ViennaRNA/2Dpfold.c:3211:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,098 3211 | if (((cnt1 + cnt3 + da) == d1) 2023-10-01T08:59:56,098 | ^~ 2023-10-01T08:59:56,100 src/ViennaRNA/2Dpfold.c:3212:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,101 3212 | && ((cnt2 + cnt4 + db) == d2)) { 2023-10-01T08:59:56,101 | ^~ 2023-10-01T08:59:56,108 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm2’: 2023-10-01T08:59:56,111 src/ViennaRNA/2Dpfold.c:3383:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,111 3383 | if (((cnt1 + cnt3 + da) == d1) 2023-10-01T08:59:56,112 | ^~ 2023-10-01T08:59:56,114 src/ViennaRNA/2Dpfold.c:3384:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,114 3384 | && ((cnt2 + cnt4 + db) == d2)) { 2023-10-01T08:59:56,115 | ^~ 2023-10-01T08:59:56,124 src/ViennaRNA/2Dpfold.c: In function ‘backtrack’: 2023-10-01T08:59:56,127 src/ViennaRNA/2Dpfold.c:3578:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,128 3578 | if ((da == d1) && (db == d2)) 2023-10-01T08:59:56,128 | ^~ 2023-10-01T08:59:56,131 src/ViennaRNA/2Dpfold.c:3578:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,131 3578 | if ((da == d1) && (db == d2)) 2023-10-01T08:59:56,132 | ^~ 2023-10-01T08:59:56,138 src/ViennaRNA/2Dpfold.c:3613:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,139 3613 | if (d1 >= da && d2 >= db) { 2023-10-01T08:59:56,139 | ^~ 2023-10-01T08:59:56,142 src/ViennaRNA/2Dpfold.c:3613:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,142 3613 | if (d1 >= da && d2 >= db) { 2023-10-01T08:59:56,143 | ^~ 2023-10-01T08:59:56,145 src/ViennaRNA/2Dpfold.c:3614:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,146 3614 | if ((d1 - da >= k_min_Q_B[my_iindx[k] - l]) && 2023-10-01T08:59:56,146 | ^~ 2023-10-01T08:59:56,148 src/ViennaRNA/2Dpfold.c:3615:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,149 3615 | (d1 - da <= k_max_Q_B[my_iindx[k] - l])) { 2023-10-01T08:59:56,149 | ^~ 2023-10-01T08:59:56,152 src/ViennaRNA/2Dpfold.c:3616:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,152 3616 | if ((d2 - db >= l_min_Q_B[my_iindx[k] - l][d1 - da]) && 2023-10-01T08:59:56,153 | ^~ 2023-10-01T08:59:56,155 src/ViennaRNA/2Dpfold.c:3617:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,156 3617 | (d2 - db <= l_max_Q_B[my_iindx[k] - l][d1 - da])) { 2023-10-01T08:59:56,156 | ^~ 2023-10-01T08:59:56,167 src/ViennaRNA/2Dpfold.c:3789:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,167 3789 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-10-01T08:59:56,168 | ^~ 2023-10-01T08:59:56,170 src/ViennaRNA/2Dpfold.c:3789:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,171 3789 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-10-01T08:59:56,172 | ^~ 2023-10-01T08:59:56,174 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,175 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:56,176 | ^ 2023-10-01T08:59:56,176 src/ViennaRNA/2Dpfold.c:3790:54: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:56,177 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-10-01T08:59:56,177 | ^~~~ 2023-10-01T08:59:56,179 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:56,179 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:56,180 | ^~~ 2023-10-01T08:59:56,180 src/ViennaRNA/2Dpfold.c:3790:54: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:56,181 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-10-01T08:59:56,181 | ^~~~ 2023-10-01T08:59:56,183 src/ViennaRNA/2Dpfold.c:3790:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,184 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-10-01T08:59:56,184 | ^~ 2023-10-01T08:59:56,187 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,187 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:56,188 | ^ 2023-10-01T08:59:56,188 src/ViennaRNA/2Dpfold.c:3792:26: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:56,188 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-01T08:59:56,189 | ^~~~ 2023-10-01T08:59:56,191 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:56,191 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:56,192 | ^~~ 2023-10-01T08:59:56,192 src/ViennaRNA/2Dpfold.c:3792:26: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:56,193 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-01T08:59:56,193 | ^~~~ 2023-10-01T08:59:56,195 src/ViennaRNA/2Dpfold.c:3792:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,195 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-01T08:59:56,196 | ^~ 2023-10-01T08:59:56,198 src/ViennaRNA/2Dpfold.c:3793:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,199 3793 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2023-10-01T08:59:56,200 | ^~ 2023-10-01T08:59:56,202 src/ViennaRNA/2Dpfold.c:3793:77: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,203 3793 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2023-10-01T08:59:56,204 | ^~ 2023-10-01T08:59:56,206 src/ViennaRNA/2Dpfold.c:3794:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,207 3794 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2023-10-01T08:59:56,207 | ^~ 2023-10-01T08:59:56,210 src/ViennaRNA/2Dpfold.c:3795:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,210 3795 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) 2023-10-01T08:59:56,211 | ^~ 2023-10-01T08:59:56,214 src/ViennaRNA/2Dpfold.c:3806:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,214 3806 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-10-01T08:59:56,215 | ^~ 2023-10-01T08:59:56,218 src/ViennaRNA/2Dpfold.c:3806:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,219 3806 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-10-01T08:59:56,220 | ^~ 2023-10-01T08:59:56,223 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,224 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:56,224 | ^ 2023-10-01T08:59:56,225 src/ViennaRNA/2Dpfold.c:3807:54: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:56,225 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-10-01T08:59:56,226 | ^~~~ 2023-10-01T08:59:56,228 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:56,228 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:56,229 | ^~~ 2023-10-01T08:59:56,229 src/ViennaRNA/2Dpfold.c:3807:54: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:56,229 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-10-01T08:59:56,230 | ^~~~ 2023-10-01T08:59:56,232 src/ViennaRNA/2Dpfold.c:3807:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,232 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-10-01T08:59:56,233 | ^~ 2023-10-01T08:59:56,236 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,236 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:56,237 | ^ 2023-10-01T08:59:56,237 src/ViennaRNA/2Dpfold.c:3809:26: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:56,238 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-01T08:59:56,239 | ^~~~ 2023-10-01T08:59:56,240 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:56,241 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:56,241 | ^~~ 2023-10-01T08:59:56,242 src/ViennaRNA/2Dpfold.c:3809:26: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:56,242 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-01T08:59:56,243 | ^~~~ 2023-10-01T08:59:56,244 src/ViennaRNA/2Dpfold.c:3809:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,245 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-01T08:59:56,245 | ^~ 2023-10-01T08:59:56,248 src/ViennaRNA/2Dpfold.c:3810:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,249 3810 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && 2023-10-01T08:59:56,249 | ^~ 2023-10-01T08:59:56,251 src/ViennaRNA/2Dpfold.c:3811:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,252 3811 | (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) { 2023-10-01T08:59:56,253 | ^~ 2023-10-01T08:59:56,256 src/ViennaRNA/2Dpfold.c:3812:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,257 3812 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2023-10-01T08:59:56,257 | ^~ 2023-10-01T08:59:56,260 src/ViennaRNA/2Dpfold.c:3813:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,260 3813 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) { 2023-10-01T08:59:56,261 | ^~ 2023-10-01T08:59:56,266 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm1’: 2023-10-01T08:59:56,270 src/ViennaRNA/2Dpfold.c:3940:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,270 3940 | if (d1 >= da && d2 >= db) { 2023-10-01T08:59:56,271 | ^~ 2023-10-01T08:59:56,274 src/ViennaRNA/2Dpfold.c:3940:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,274 3940 | if (d1 >= da && d2 >= db) { 2023-10-01T08:59:56,275 | ^~ 2023-10-01T08:59:56,278 src/ViennaRNA/2Dpfold.c:3941:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,278 3941 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2023-10-01T08:59:56,279 | ^~ 2023-10-01T08:59:56,282 src/ViennaRNA/2Dpfold.c:3941:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,282 3941 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2023-10-01T08:59:56,283 | ^~ 2023-10-01T08:59:56,285 src/ViennaRNA/2Dpfold.c:3942:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,286 3942 | if ((d2 - db >= l_min_Q_B[ii - l][d1 - da]) && 2023-10-01T08:59:56,287 | ^~ 2023-10-01T08:59:56,289 src/ViennaRNA/2Dpfold.c:3943:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,290 3943 | (d2 - db <= l_max_Q_B[ii - l][d1 - da])) { 2023-10-01T08:59:56,290 | ^~ 2023-10-01T08:59:56,300 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm’: 2023-10-01T08:59:56,304 src/ViennaRNA/2Dpfold.c:4157:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,305 4157 | if (d1 >= da2 && d2 >= db2) { 2023-10-01T08:59:56,305 | ^~ 2023-10-01T08:59:56,310 src/ViennaRNA/2Dpfold.c:4157:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,311 4157 | if (d1 >= da2 && d2 >= db2) { 2023-10-01T08:59:56,311 | ^~ 2023-10-01T08:59:56,314 src/ViennaRNA/2Dpfold.c:4158:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,315 4158 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2023-10-01T08:59:56,316 | ^~ 2023-10-01T08:59:56,319 src/ViennaRNA/2Dpfold.c:4158:69: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,319 4158 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2023-10-01T08:59:56,320 | ^~ 2023-10-01T08:59:56,323 src/ViennaRNA/2Dpfold.c:4159:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,323 4159 | if ((d2 - db2 >= l_min_Q_M1[jindx[j] + k][d1 - da2]) && 2023-10-01T08:59:56,324 | ^~ 2023-10-01T08:59:56,327 src/ViennaRNA/2Dpfold.c:4160:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,327 4160 | (d2 - db2 <= l_max_Q_M1[jindx[j] + k][d1 - da2])) { 2023-10-01T08:59:56,328 | ^~ 2023-10-01T08:59:56,331 src/ViennaRNA/2Dpfold.c:4173:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,331 4173 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2023-10-01T08:59:56,332 | ^~ 2023-10-01T08:59:56,335 src/ViennaRNA/2Dpfold.c:4173:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,336 4173 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2023-10-01T08:59:56,336 | ^~ 2023-10-01T08:59:56,339 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,340 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:56,340 | ^ 2023-10-01T08:59:56,341 src/ViennaRNA/2Dpfold.c:4175:26: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:56,341 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-10-01T08:59:56,342 | ^~~~ 2023-10-01T08:59:56,344 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:56,344 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:56,345 | ^~~ 2023-10-01T08:59:56,346 src/ViennaRNA/2Dpfold.c:4175:26: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:56,346 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-10-01T08:59:56,347 | ^~~~ 2023-10-01T08:59:56,348 src/ViennaRNA/2Dpfold.c:4175:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,349 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-10-01T08:59:56,349 | ^~ 2023-10-01T08:59:56,352 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,353 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:56,354 | ^ 2023-10-01T08:59:56,354 src/ViennaRNA/2Dpfold.c:4177:28: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:56,355 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-01T08:59:56,355 | ^~~~ 2023-10-01T08:59:56,357 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T08:59:56,358 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T08:59:56,358 | ^~~ 2023-10-01T08:59:56,359 src/ViennaRNA/2Dpfold.c:4177:28: note: in expansion of macro ‘MIN2’ 2023-10-01T08:59:56,360 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-01T08:59:56,360 | ^~~~ 2023-10-01T08:59:56,362 src/ViennaRNA/2Dpfold.c:4177:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,362 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-01T08:59:56,362 | ^~ 2023-10-01T08:59:56,365 src/ViennaRNA/2Dpfold.c:4178:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,366 4178 | if ((d1 - da - cnt1 >= k_min_Q_M1[jindx[j] + k]) && 2023-10-01T08:59:56,366 | ^~ 2023-10-01T08:59:56,369 src/ViennaRNA/2Dpfold.c:4179:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,370 4179 | (d1 - da - cnt1 <= k_max_Q_M1[jindx[j] + k])) { 2023-10-01T08:59:56,370 | ^~ 2023-10-01T08:59:56,373 src/ViennaRNA/2Dpfold.c:4180:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,374 4180 | if ((d2 - db - cnt2 >= l_min_Q_M1[jindx[j] + k][d1 - da - cnt1]) && 2023-10-01T08:59:56,374 | ^~ 2023-10-01T08:59:56,377 src/ViennaRNA/2Dpfold.c:4181:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T08:59:56,378 4181 | (d2 - db - cnt2 <= l_max_Q_M1[jindx[j] + k][d1 - da - cnt1])) { 2023-10-01T08:59:56,378 | ^~ 2023-10-01T08:59:56,384 src/ViennaRNA/2Dpfold.c:4212:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,384 4212 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2023-10-01T08:59:56,385 | ^~ 2023-10-01T08:59:56,388 src/ViennaRNA/2Dpfold.c:4212:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T08:59:56,388 4212 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2023-10-01T08:59:56,389 | ^~ 2023-10-01T09:00:03,364 In function ‘updatePosteriorBoundaries’, 2023-10-01T09:00:03,365 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:587:21: 2023-10-01T09:00:03,367 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post_b’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:03,367 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-10-01T09:00:03,368 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-10-01T09:00:03,368 src/ViennaRNA/2Dpfold.c:467:57: note: ‘l_max_post_b’ was declared here 2023-10-01T09:00:03,369 467 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2023-10-01T09:00:03,369 | ^~~~~~~~~~~~ 2023-10-01T09:00:03,370 In function ‘updatePosteriorBoundaries’, 2023-10-01T09:00:03,371 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:587:21: 2023-10-01T09:00:03,371 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post_b’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:03,372 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-10-01T09:00:03,373 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-10-01T09:00:03,373 src/ViennaRNA/2Dpfold.c:467:42: note: ‘l_min_post_b’ was declared here 2023-10-01T09:00:03,374 467 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2023-10-01T09:00:03,374 | ^~~~~~~~~~~~ 2023-10-01T09:00:03,374 In function ‘updatePosteriorBoundaries’, 2023-10-01T09:00:03,375 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:1210:21: 2023-10-01T09:00:03,375 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:03,376 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-10-01T09:00:03,376 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-10-01T09:00:03,377 src/ViennaRNA/2Dpfold.c:1041:49: note: ‘l_max_post’ was declared here 2023-10-01T09:00:03,378 1041 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2023-10-01T09:00:03,378 | ^~~~~~~~~~ 2023-10-01T09:00:03,378 In function ‘updatePosteriorBoundaries’, 2023-10-01T09:00:03,379 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:1210:21: 2023-10-01T09:00:03,379 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:03,380 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-10-01T09:00:03,380 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-10-01T09:00:03,381 src/ViennaRNA/2Dpfold.c:1041:36: note: ‘l_min_post’ was declared here 2023-10-01T09:00:03,381 1041 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2023-10-01T09:00:03,382 | ^~~~~~~~~~ 2023-10-01T09:00:03,382 In function ‘updatePosteriorBoundaries’, 2023-10-01T09:00:03,383 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:958:17: 2023-10-01T09:00:03,384 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post_m’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:03,384 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-10-01T09:00:03,385 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-10-01T09:00:03,386 src/ViennaRNA/2Dpfold.c:711:55: note: ‘l_max_post_m’ was declared here 2023-10-01T09:00:03,386 711 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2023-10-01T09:00:03,387 | ^~~~~~~~~~~~ 2023-10-01T09:00:03,388 In function ‘updatePosteriorBoundaries’, 2023-10-01T09:00:03,389 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:958:17: 2023-10-01T09:00:03,389 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post_m’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:03,390 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-10-01T09:00:03,391 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-10-01T09:00:03,391 src/ViennaRNA/2Dpfold.c:711:40: note: ‘l_min_post_m’ was declared here 2023-10-01T09:00:03,392 711 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2023-10-01T09:00:03,393 | ^~~~~~~~~~~~ 2023-10-01T09:00:07,416 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/LPfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/LPfold.o -fopenmp 2023-10-01T09:00:07,661 src/ViennaRNA/LPfold.c: In function ‘free_dp_matrices’: 2023-10-01T09:00:07,662 src/ViennaRNA/LPfold.c:514:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:00:07,663 514 | if (n > winSize + MAXLOOP) 2023-10-01T09:00:07,663 | ^ 2023-10-01T09:00:07,667 src/ViennaRNA/LPfold.c: In function ‘rotate_constraints’: 2023-10-01T09:00:07,668 src/ViennaRNA/LPfold.c:667:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:07,668 667 | if (j + 1 <= fc->length) { 2023-10-01T09:00:07,669 | ^~ 2023-10-01T09:00:11,295 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/Lfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/Lfold.o -fopenmp 2023-10-01T09:00:11,512 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/MEA.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/MEA.o -fopenmp 2023-10-01T09:00:11,763 src/ViennaRNA/MEA.c: In function ‘prune_sort’: 2023-10-01T09:00:11,764 src/ViennaRNA/MEA.c:321:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:11,765 321 | for (i = pc->i; i <= pc->j; i++) 2023-10-01T09:00:11,765 | ^~ 2023-10-01T09:00:11,766 src/ViennaRNA/MEA.c:342:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:11,767 342 | for (i = pc->i; i <= pc->j; i++) 2023-10-01T09:00:11,768 | ^~ 2023-10-01T09:00:11,768 src/ViennaRNA/MEA.c:349:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:11,769 349 | if (pc->i > n) 2023-10-01T09:00:11,770 | ^ 2023-10-01T09:00:11,771 src/ViennaRNA/MEA.c:358:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:11,772 358 | for (i = pc->i; i <= pc->j; i++) 2023-10-01T09:00:11,773 | ^~ 2023-10-01T09:00:12,360 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/ProfileAln.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ProfileAln.o -fopenmp 2023-10-01T09:00:13,155 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/ProfileDist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ProfileDist.o -fopenmp 2023-10-01T09:00:13,461 src/ViennaRNA/ProfileDist.c: In function ‘PrfEditCost’: 2023-10-01T09:00:13,462 src/ViennaRNA/ProfileDist.c:199:10: warning: ‘dist’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:13,463 199 | return dist; 2023-10-01T09:00:13,463 | ^~~~ 2023-10-01T09:00:13,464 src/ViennaRNA/ProfileDist.c:180:11: note: ‘dist’ was declared here 2023-10-01T09:00:13,464 180 | double dist; 2023-10-01T09:00:13,465 | ^~~~ 2023-10-01T09:00:13,822 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/RNAstruct.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/RNAstruct.o -fopenmp 2023-10-01T09:00:13,967 src/ViennaRNA/RNAstruct.c: In function ‘b2Shapiro’: 2023-10-01T09:00:13,967 src/ViennaRNA/RNAstruct.c:302:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:00:13,968 302 | for (k = 0; k < strlen(tt); k++) 2023-10-01T09:00:13,969 | ^ 2023-10-01T09:00:13,969 src/ViennaRNA/RNAstruct.c:305:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:00:13,970 305 | for (k = 0; k < strlen(tt); k++) 2023-10-01T09:00:13,970 | ^ 2023-10-01T09:00:13,972 src/ViennaRNA/RNAstruct.c: In function ‘expand_Shapiro’: 2023-10-01T09:00:13,973 src/ViennaRNA/RNAstruct.c:445:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:00:13,973 445 | while (i < strlen(structure) - 1) { 2023-10-01T09:00:13,974 | ^ 2023-10-01T09:00:13,976 src/ViennaRNA/RNAstruct.c: In function ‘unexpand_aligned_F’: 2023-10-01T09:00:13,977 src/ViennaRNA/RNAstruct.c:599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:00:13,978 599 | for (i = 0, l = 0; i < strlen(align[0]); i++) { 2023-10-01T09:00:13,978 | ^ 2023-10-01T09:00:14,781 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/ali_plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ali_plex.o -fopenmp 2023-10-01T09:00:15,021 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold’: 2023-10-01T09:00:15,022 src/ViennaRNA/ali_plex.c:230:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:00:15,023 230 | if (strlen(s1[s]) != n3) 2023-10-01T09:00:15,023 | ^~ 2023-10-01T09:00:15,024 src/ViennaRNA/ali_plex.c:233:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:00:15,025 233 | if (strlen(s2[s]) != n4) 2023-10-01T09:00:15,026 | ^~ 2023-10-01T09:00:15,031 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2023-10-01T09:00:15,032 src/ViennaRNA/ali_plex.c:509:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:00:15,033 509 | if (strlen(s1[s]) != n1) 2023-10-01T09:00:15,034 | ^~ 2023-10-01T09:00:15,034 src/ViennaRNA/ali_plex.c:512:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:00:15,035 512 | if (strlen(s2[s]) != n2) 2023-10-01T09:00:15,035 | ^~ 2023-10-01T09:00:16,564 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold_XS’: 2023-10-01T09:00:16,565 src/ViennaRNA/ali_plex.c:1032:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:00:16,565 1032 | if (strlen(s1[s]) != n3) 2023-10-01T09:00:16,566 | ^~ 2023-10-01T09:00:16,566 src/ViennaRNA/ali_plex.c:1035:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:00:16,567 1035 | if (strlen(s2[s]) != n4) 2023-10-01T09:00:16,567 | ^~ 2023-10-01T09:00:16,581 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-10-01T09:00:16,582 src/ViennaRNA/ali_plex.c:1347:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:00:16,583 1347 | if (strlen(s1[s]) != n1) 2023-10-01T09:00:16,583 | ^~ 2023-10-01T09:00:16,584 src/ViennaRNA/ali_plex.c:1350:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:00:16,584 1350 | if (strlen(s2[s]) != n2) 2023-10-01T09:00:16,585 | ^~ 2023-10-01T09:00:20,783 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2023-10-01T09:00:20,783 src/ViennaRNA/ali_plex.c:950:62: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:20,784 950 | int end_q = MIN2(n2 - 10, max_pos_j + alignment_length - 1); 2023-10-01T09:00:20,785 | ^ 2023-10-01T09:00:20,785 src/ViennaRNA/ali_plex.c:466:9: note: ‘max_pos_j’ was declared here 2023-10-01T09:00:20,786 466 | int max_pos_j; 2023-10-01T09:00:20,787 | ^~~~~~~~~ 2023-10-01T09:00:20,787 src/ViennaRNA/ali_plex.c:947:57: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:20,788 947 | int begin_t = MAX2(11, max_pos - alignment_length + 1); 2023-10-01T09:00:20,789 | ^ 2023-10-01T09:00:20,790 src/ViennaRNA/ali_plex.c:465:9: note: ‘max_pos’ was declared here 2023-10-01T09:00:20,790 465 | int max_pos; /* get position of the best hit */ 2023-10-01T09:00:20,791 | ^~~~~~~ 2023-10-01T09:00:20,792 src/ViennaRNA/ali_plex.c:787:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:20,792 787 | position_j[i + delta] = min_j_colonne; 2023-10-01T09:00:20,793 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-10-01T09:00:20,794 src/ViennaRNA/ali_plex.c:468:9: note: ‘min_j_colonne’ was declared here 2023-10-01T09:00:20,795 468 | int min_j_colonne; 2023-10-01T09:00:20,795 | ^~~~~~~~~~~~~ 2023-10-01T09:00:22,044 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-10-01T09:00:22,045 src/ViennaRNA/ali_plex.c:1818:64: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:22,046 1818 | int end_q = MIN2(n2 - 10, max_pos_j + alignment_length - 1); 2023-10-01T09:00:22,046 | ^ 2023-10-01T09:00:22,047 src/ViennaRNA/ali_plex.c:1295:9: note: ‘max_pos_j’ was declared here 2023-10-01T09:00:22,048 1295 | int max_pos_j; 2023-10-01T09:00:22,049 | ^~~~~~~~~ 2023-10-01T09:00:22,049 In function ‘aliplot_max_XS’, 2023-10-01T09:00:22,050 inlined from ‘aliLduplexfold_XS’ at src/ViennaRNA/ali_plex.c:1659:3: 2023-10-01T09:00:22,050 src/ViennaRNA/ali_plex.c:1812:5: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:22,051 1812 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-10-01T09:00:22,051 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:00:22,052 1813 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-10-01T09:00:22,052 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:00:22,052 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-10-01T09:00:22,053 src/ViennaRNA/ali_plex.c:1294:9: note: ‘max_pos’ was declared here 2023-10-01T09:00:22,053 1294 | int max_pos; /* get position of the best hit */ 2023-10-01T09:00:22,054 | ^~~~~~~ 2023-10-01T09:00:22,054 src/ViennaRNA/ali_plex.c:1636:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:22,055 1636 | position_j[i + delta] = min_j_colonne; 2023-10-01T09:00:22,056 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-10-01T09:00:22,056 src/ViennaRNA/ali_plex.c:1297:9: note: ‘min_j_colonne’ was declared here 2023-10-01T09:00:22,057 1297 | int min_j_colonne; 2023-10-01T09:00:22,058 | ^~~~~~~~~~~~~ 2023-10-01T09:00:23,146 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/alifold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/alifold.o -fopenmp 2023-10-01T09:00:23,603 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/alipfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/alipfold.o -fopenmp 2023-10-01T09:00:23,843 src/ViennaRNA/alipfold.c: In function ‘wrap_alipf_fold’: 2023-10-01T09:00:23,844 src/ViennaRNA/alipfold.c:155:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:23,845 155 | for (n_seq = 0; n_seq < backward_compat_compound->n_seq; n_seq++) 2023-10-01T09:00:23,845 | ^ 2023-10-01T09:00:23,846 src/ViennaRNA/alipfold.c:166:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:23,847 166 | for (n_seq = 0; n_seq < vc->n_seq; n_seq++) { 2023-10-01T09:00:23,847 | ^ 2023-10-01T09:00:23,848 src/ViennaRNA/alipfold.c:169:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:23,849 169 | for (i = 1; i <= vc->length; i++) 2023-10-01T09:00:23,850 | ^~ 2023-10-01T09:00:24,106 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/alphabet.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/alphabet.o -fopenmp 2023-10-01T09:00:24,814 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/boltzmann_sampling.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/boltzmann_sampling.o -fopenmp 2023-10-01T09:00:25,087 In file included from src/ViennaRNA/boltzmann_sampling.c:29: 2023-10-01T09:00:25,088 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-10-01T09:00:25,088 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:25,089 224 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:00:25,090 | ^ 2023-10-01T09:00:25,090 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-10-01T09:00:25,091 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:25,091 265 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:00:25,092 | ^ 2023-10-01T09:00:25,093 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-10-01T09:00:25,093 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:25,094 320 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:00:25,095 | ^ 2023-10-01T09:00:25,096 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-10-01T09:00:25,096 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:25,097 385 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:00:25,098 | ^ 2023-10-01T09:00:25,098 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-10-01T09:00:25,099 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:25,100 414 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:00:25,101 | ^ 2023-10-01T09:00:25,102 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-10-01T09:00:25,102 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:25,103 463 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:00:25,104 | ^ 2023-10-01T09:00:25,105 In file included from src/ViennaRNA/boltzmann_sampling.c:30: 2023-10-01T09:00:25,105 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-10-01T09:00:25,106 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:25,107 73 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:00:25,108 | ^ 2023-10-01T09:00:25,108 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-10-01T09:00:25,109 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:25,110 112 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:00:25,111 | ^ 2023-10-01T09:00:25,112 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-10-01T09:00:25,112 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:25,113 143 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:00:25,114 | ^ 2023-10-01T09:00:25,115 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-10-01T09:00:25,115 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:25,116 185 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:00:25,116 | ^ 2023-10-01T09:00:25,117 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-10-01T09:00:25,117 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:25,118 224 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:00:25,118 | ^ 2023-10-01T09:00:25,119 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-10-01T09:00:25,120 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:25,120 730 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:00:25,121 | ^ 2023-10-01T09:00:25,122 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-10-01T09:00:25,123 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:25,123 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-10-01T09:00:25,124 | ^~ 2023-10-01T09:00:25,126 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-10-01T09:00:25,135 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:25,135 784 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:00:25,136 | ^ 2023-10-01T09:00:25,137 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-10-01T09:00:25,137 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:25,138 825 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:00:25,139 | ^ 2023-10-01T09:00:25,141 In file included from src/ViennaRNA/boltzmann_sampling.c:33: 2023-10-01T09:00:25,142 src/ViennaRNA/data_structures_nonred.inc: In function ‘free_all_nrll’: 2023-10-01T09:00:25,143 src/ViennaRNA/data_structures_nonred.inc:1153:7: warning: unused variable ‘i’ [-Wunused-variable] 2023-10-01T09:00:25,143 1153 | int i; 2023-10-01T09:00:25,144 | ^ 2023-10-01T09:00:28,946 src/ViennaRNA/boltzmann_sampling.c: In function ‘backtrack’: 2023-10-01T09:00:28,947 src/ViennaRNA/boltzmann_sampling.c:1306:25: warning: ‘type’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:28,948 1306 | q_temp *= exp_E_IntLoop(u1, 2023-10-01T09:00:28,949 | ^~~~~~~~~~~~~~~~~ 2023-10-01T09:00:28,950 1307 | u2, 2023-10-01T09:00:28,950 | ~~~ 2023-10-01T09:00:28,951 1308 | type, 2023-10-01T09:00:28,951 | ~~~~~ 2023-10-01T09:00:28,952 1309 | type_2, 2023-10-01T09:00:28,952 | ~~~~~~~ 2023-10-01T09:00:28,953 1310 | S1[i + 1], 2023-10-01T09:00:28,954 | ~~~~~~~~~~ 2023-10-01T09:00:28,954 1311 | S1[j - 1], 2023-10-01T09:00:28,955 | ~~~~~~~~~~ 2023-10-01T09:00:28,955 1312 | S1[k - 1], 2023-10-01T09:00:28,956 | ~~~~~~~~~~ 2023-10-01T09:00:28,956 1313 | S1[l + 1], 2023-10-01T09:00:28,957 | ~~~~~~~~~~ 2023-10-01T09:00:28,958 1314 | pf_params); 2023-10-01T09:00:28,958 | ~~~~~~~~~~ 2023-10-01T09:00:28,959 src/ViennaRNA/boltzmann_sampling.c:1125:45: note: ‘type’ was declared here 2023-10-01T09:00:28,959 1125 | unsigned int **a2s, s, n_seq, n, type, type_2, *types, u1_local, u2_local; 2023-10-01T09:00:28,960 | ^~~~ 2023-10-01T09:00:30,532 In function ‘pbacktrack_circ’, 2023-10-01T09:00:30,532 inlined from ‘vrna_pbacktrack_sub_resume_cb’ at src/ViennaRNA/boltzmann_sampling.c:258:11: 2023-10-01T09:00:30,533 src/ViennaRNA/boltzmann_sampling.c:1659:32: warning: ‘type’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:30,534 1659 | q_temp *= exp_E_IntLoop(ln2 + ln3, 2023-10-01T09:00:30,534 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:00:30,535 1660 | ln1, 2023-10-01T09:00:30,536 | ~~~~ 2023-10-01T09:00:30,536 1661 | type2, 2023-10-01T09:00:30,537 | ~~~~~~ 2023-10-01T09:00:30,538 1662 | type, 2023-10-01T09:00:30,539 | ~~~~~ 2023-10-01T09:00:30,539 1663 | S1[l + 1], 2023-10-01T09:00:30,540 | ~~~~~~~~~~ 2023-10-01T09:00:30,541 1664 | S1[k - 1], 2023-10-01T09:00:30,542 | ~~~~~~~~~~ 2023-10-01T09:00:30,542 1665 | S1[i - 1], 2023-10-01T09:00:30,543 | ~~~~~~~~~~ 2023-10-01T09:00:30,544 1666 | S1[j + 1], 2023-10-01T09:00:30,544 | ~~~~~~~~~~ 2023-10-01T09:00:30,545 1667 | pf_params); 2023-10-01T09:00:30,546 | ~~~~~~~~~~ 2023-10-01T09:00:30,546 src/ViennaRNA/boltzmann_sampling.c: In function ‘vrna_pbacktrack_sub_resume_cb’: 2023-10-01T09:00:30,547 src/ViennaRNA/boltzmann_sampling.c:1524:25: note: ‘type’ was declared here 2023-10-01T09:00:30,548 1524 | unsigned int type, type2, *tt, s, n_seq, **a2s, u1_local, 2023-10-01T09:00:30,549 | ^~~~ 2023-10-01T09:00:31,219 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/bs_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/bs_wrappers.o -fopenmp 2023-10-01T09:00:31,625 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/c_plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/c_plex.o -fopenmp 2023-10-01T09:00:31,869 src/ViennaRNA/c_plex.c: In function ‘duplexfold_CXS’: 2023-10-01T09:00:31,870 src/ViennaRNA/c_plex.c:358:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:00:31,871 358 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2023-10-01T09:00:31,871 | ^~~~~~~ 2023-10-01T09:00:31,894 src/ViennaRNA/c_plex.c: In function ‘find_max_CXS’: 2023-10-01T09:00:31,894 src/ViennaRNA/c_plex.c:942:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:00:31,895 942 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-10-01T09:00:31,896 | ^~ 2023-10-01T09:00:31,897 src/ViennaRNA/c_plex.c: In function ‘plot_max_CXS’: 2023-10-01T09:00:31,897 src/ViennaRNA/c_plex.c:993:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:00:31,898 993 | if (dL <= strlen(test.structure) - l1 - 1) 2023-10-01T09:00:31,899 | ^~ 2023-10-01T09:00:31,905 src/ViennaRNA/c_plex.c: In function ‘duplexfold_C’: 2023-10-01T09:00:31,905 src/ViennaRNA/c_plex.c:1014:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:00:31,906 1014 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-10-01T09:00:31,907 | ^~ 2023-10-01T09:00:31,931 src/ViennaRNA/c_plex.c: In function ‘find_max_C’: 2023-10-01T09:00:31,933 src/ViennaRNA/c_plex.c:1622:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:00:31,933 1622 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-10-01T09:00:31,934 | ^~ 2023-10-01T09:00:31,935 src/ViennaRNA/c_plex.c: In function ‘plot_max_C’: 2023-10-01T09:00:31,936 src/ViennaRNA/c_plex.c:1676:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:00:31,937 1676 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-10-01T09:00:31,937 | ^~ 2023-10-01T09:00:34,396 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2023-10-01T09:00:34,397 src/ViennaRNA/c_plex.c:978:73: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:34,397 978 | int end_q = MIN2(n2 - 9, max_pos_j + alignment_length - 2); 2023-10-01T09:00:34,398 | ^ 2023-10-01T09:00:34,398 src/ViennaRNA/c_plex.c:533:13: note: ‘max_pos_j’ was declared here 2023-10-01T09:00:34,399 533 | int max_pos_j; 2023-10-01T09:00:34,400 | ^~~~~~~~~ 2023-10-01T09:00:34,401 In function ‘plot_max_CXS’, 2023-10-01T09:00:34,401 inlined from ‘Lduplexfold_CXS’ at src/ViennaRNA/c_plex.c:825:5: 2023-10-01T09:00:34,402 src/ViennaRNA/c_plex.c:972:5: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:34,403 972 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", max_pos - 3, max_pos_j, 2023-10-01T09:00:34,403 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:00:34,404 973 | ((double)max) / 100); 2023-10-01T09:00:34,404 | ~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:00:34,405 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2023-10-01T09:00:34,405 src/ViennaRNA/c_plex.c:532:13: note: ‘max_pos’ was declared here 2023-10-01T09:00:34,406 532 | int max_pos; /* get position of the best hit */ 2023-10-01T09:00:34,407 | ^~~~~~~ 2023-10-01T09:00:34,407 src/ViennaRNA/c_plex.c:801:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:34,408 801 | position_j[i + delta] = min_j_colonne; 2023-10-01T09:00:34,408 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-10-01T09:00:34,409 src/ViennaRNA/c_plex.c:535:13: note: ‘min_j_colonne’ was declared here 2023-10-01T09:00:34,409 535 | int min_j_colonne; 2023-10-01T09:00:34,410 | ^~~~~~~~~~~~~ 2023-10-01T09:00:35,786 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_C’: 2023-10-01T09:00:35,787 src/ViennaRNA/c_plex.c:1659:69: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:00:35,788 1659 | int begin_t = MAX2(11, max_pos - alignment_length + 1); 2023-10-01T09:00:35,788 | ^ 2023-10-01T09:00:35,789 src/ViennaRNA/c_plex.c:1271:7: note: ‘max_pos’ was declared here 2023-10-01T09:00:35,789 1271 | int max_pos; /* get position of the best hit */ 2023-10-01T09:00:35,790 | ^~~~~~~ 2023-10-01T09:00:36,757 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/centroid.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/centroid.o -fopenmp 2023-10-01T09:00:37,241 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/cofold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/cofold.o -fopenmp 2023-10-01T09:00:37,613 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/combinatorics.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/combinatorics.o -fopenmp 2023-10-01T09:00:37,752 src/ViennaRNA/combinatorics.c: In function ‘sawada_fast’: 2023-10-01T09:00:37,753 src/ViennaRNA/combinatorics.c:729:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:37,753 729 | if (content[k - 1].count == n - t + 1) { 2023-10-01T09:00:37,754 | ^~ 2023-10-01T09:00:37,755 src/ViennaRNA/combinatorics.c:730:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:37,756 730 | if ((content[k - 1].count == r[t - p]) && (n % p == 0)) 2023-10-01T09:00:37,756 | ^~ 2023-10-01T09:00:37,757 src/ViennaRNA/combinatorics.c:732:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:37,758 732 | else if (content[k - 1].count > r[t - p]) 2023-10-01T09:00:37,759 | ^ 2023-10-01T09:00:37,759 src/ViennaRNA/combinatorics.c:734:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:37,760 734 | } else if (content[0].count != (n - t + 1)) { 2023-10-01T09:00:37,761 | ^~ 2023-10-01T09:00:38,429 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/commands.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/commands.o -fopenmp 2023-10-01T09:00:38,643 src/ViennaRNA/commands.c: In function ‘parse_constraints_line’: 2023-10-01T09:00:38,644 src/ViennaRNA/commands.c:822:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:00:38,644 822 | if (pp == strlen(buf)) { 2023-10-01T09:00:38,645 | ^~ 2023-10-01T09:00:38,646 src/ViennaRNA/commands.c:830:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:00:38,646 830 | if (pp == strlen(buf)) { 2023-10-01T09:00:38,647 | ^~ 2023-10-01T09:00:38,648 src/ViennaRNA/commands.c:840:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:00:38,648 840 | if (pp == strlen(buf)) { 2023-10-01T09:00:38,649 | ^~ 2023-10-01T09:00:38,649 src/ViennaRNA/commands.c:851:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:00:38,650 851 | if (pp == strlen(buf)) { 2023-10-01T09:00:38,652 | ^~ 2023-10-01T09:00:38,653 src/ViennaRNA/commands.c:857:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:00:38,653 857 | if (pp == strlen(buf)) { 2023-10-01T09:00:38,654 | ^~ 2023-10-01T09:00:38,655 src/ViennaRNA/commands.c:869:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:00:38,655 869 | if (pp == strlen(buf)) { 2023-10-01T09:00:38,656 | ^~ 2023-10-01T09:00:38,656 src/ViennaRNA/commands.c:886:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:00:38,657 886 | if (pp == strlen(buf)) { 2023-10-01T09:00:38,658 | ^~ 2023-10-01T09:00:38,658 src/ViennaRNA/commands.c:895:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:00:38,659 895 | if (pp == strlen(buf)) { 2023-10-01T09:00:38,660 | ^~ 2023-10-01T09:00:39,341 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/concentrations.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/concentrations.o -fopenmp 2023-10-01T09:00:39,556 src/ViennaRNA/concentrations.c:226:1: warning: ‘conc_complexes’ defined but not used [-Wunused-function] 2023-10-01T09:00:39,557 226 | conc_complexes(double *L, 2023-10-01T09:00:39,557 | ^~~~~~~~~~~~~~ 2023-10-01T09:00:39,711 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/SHAPE.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/SHAPE.o -fopenmp 2023-10-01T09:00:39,935 src/ViennaRNA/constraints/SHAPE.c: In function ‘vrna_sc_add_SHAPE_deigan’: 2023-10-01T09:00:39,936 src/ViennaRNA/constraints/SHAPE.c:327:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:39,936 327 | for (i = 1; i <= vc->length; ++i) 2023-10-01T09:00:39,937 | ^~ 2023-10-01T09:00:39,938 src/ViennaRNA/constraints/SHAPE.c: In function ‘vrna_sc_add_SHAPE_deigan_ali’: 2023-10-01T09:00:39,938 src/ViennaRNA/constraints/SHAPE.c:410:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:39,939 410 | for (i = 1; i <= vc->length; i++) 2023-10-01T09:00:39,940 | ^~ 2023-10-01T09:00:39,941 src/ViennaRNA/constraints/SHAPE.c:418:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:39,941 418 | } else if (position > vc->length) { 2023-10-01T09:00:39,942 | ^ 2023-10-01T09:00:39,943 src/ViennaRNA/constraints/SHAPE.c:456:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:39,944 456 | for (gaps = 0, i = 1; i <= vc->length; i++) { 2023-10-01T09:00:39,945 | ^~ 2023-10-01T09:00:40,591 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/constraints.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/constraints.o -fopenmp 2023-10-01T09:00:40,848 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/hard.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/hard.o -fopenmp 2023-10-01T09:00:41,066 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_up’: 2023-10-01T09:00:41,067 src/ViennaRNA/constraints/hard.c:303:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:41,068 303 | if ((i <= 0) || (i > fc->length)) { 2023-10-01T09:00:41,068 | ^ 2023-10-01T09:00:41,069 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_up_batch’: 2023-10-01T09:00:41,069 src/ViennaRNA/constraints/hard.c:375:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:41,070 375 | if ((pos <= 0) || (pos > fc->length)) 2023-10-01T09:00:41,070 | ^ 2023-10-01T09:00:41,071 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp_nonspecific’: 2023-10-01T09:00:41,071 src/ViennaRNA/constraints/hard.c:455:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:41,072 455 | if ((i <= 0) || (i > vc->length)) { 2023-10-01T09:00:41,072 | ^ 2023-10-01T09:00:41,073 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp_strand’: 2023-10-01T09:00:41,074 src/ViennaRNA/constraints/hard.c:513:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:41,074 513 | ((j - i - 1) < turn)) 2023-10-01T09:00:41,075 | ^ 2023-10-01T09:00:41,075 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp’: 2023-10-01T09:00:41,076 src/ViennaRNA/constraints/hard.c:549:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:41,076 549 | if ((i <= 0) || (j <= i) || (j > vc->length)) { 2023-10-01T09:00:41,077 | ^ 2023-10-01T09:00:41,078 src/ViennaRNA/constraints/hard.c: In function ‘default_pair_constraint’: 2023-10-01T09:00:41,078 src/ViennaRNA/constraints/hard.c:727:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:41,079 727 | (j < fc->length) && 2023-10-01T09:00:41,080 | ^ 2023-10-01T09:00:41,081 src/ViennaRNA/constraints/hard.c:760:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:41,082 760 | (j < fc->length) && 2023-10-01T09:00:41,082 | ^ 2023-10-01T09:00:41,101 src/ViennaRNA/constraints/hard.c: In function ‘populate_hc_bp’: 2023-10-01T09:00:41,102 src/ViennaRNA/constraints/hard.c:1076:51: warning: variable ‘turn’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:00:41,103 1076 | unsigned int max_span, maxdist, j, k, p, n, l, turn, strand, sj, sl, actual_i, actual_j, 2023-10-01T09:00:41,104 | ^~~~ 2023-10-01T09:00:41,108 In file included from src/ViennaRNA/constraints/hard.c:18: 2023-10-01T09:00:41,109 src/ViennaRNA/constraints/hard.c: In function ‘apply_DB_constraint’: 2023-10-01T09:00:41,110 src/ViennaRNA/utils/basic.h:111:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:41,110 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-10-01T09:00:41,111 | ^ 2023-10-01T09:00:41,111 src/ViennaRNA/constraints/hard.c:1656:24: note: in expansion of macro ‘MAX2’ 2023-10-01T09:00:41,112 1656 | for (l = MAX2(j + min_loop_size, cut); l <= length; l++) { 2023-10-01T09:00:41,113 | ^~~~ 2023-10-01T09:00:41,114 src/ViennaRNA/utils/basic.h:111:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T09:00:41,115 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-10-01T09:00:41,115 | ^~~ 2023-10-01T09:00:41,115 src/ViennaRNA/constraints/hard.c:1656:24: note: in expansion of macro ‘MAX2’ 2023-10-01T09:00:41,116 1656 | for (l = MAX2(j + min_loop_size, cut); l <= length; l++) { 2023-10-01T09:00:41,116 | ^~~~ 2023-10-01T09:00:41,117 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:41,117 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:00:41,118 | ^ 2023-10-01T09:00:41,118 src/ViennaRNA/constraints/hard.c:1670:31: note: in expansion of macro ‘MIN2’ 2023-10-01T09:00:41,119 1670 | for (l = 1; l < MIN2(cut, j - min_loop_size); l++) { 2023-10-01T09:00:41,119 | ^~~~ 2023-10-01T09:00:41,119 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T09:00:41,120 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:00:41,120 | ^~~ 2023-10-01T09:00:41,121 src/ViennaRNA/constraints/hard.c:1670:31: note: in expansion of macro ‘MIN2’ 2023-10-01T09:00:41,121 1670 | for (l = 1; l < MIN2(cut, j - min_loop_size); l++) { 2023-10-01T09:00:41,122 | ^~~~ 2023-10-01T09:00:41,122 src/ViennaRNA/constraints/hard.c:1695:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:41,123 1695 | for (l = 1; l < j; l++) { 2023-10-01T09:00:41,123 | ^ 2023-10-01T09:00:41,124 src/ViennaRNA/constraints/hard.c:1709:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:41,125 1709 | for (l = j + 1; l < cut; l++) { 2023-10-01T09:00:41,125 | ^ 2023-10-01T09:00:41,126 src/ViennaRNA/constraints/hard.c:1723:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:41,126 1723 | for (l = cut; l < j; l++) { 2023-10-01T09:00:41,127 | ^ 2023-10-01T09:00:41,128 src/ViennaRNA/constraints/hard.c:1779:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:41,129 1779 | for (i = 0; i < num_bp_unspecific; i++) 2023-10-01T09:00:41,129 | ^ 2023-10-01T09:00:41,130 src/ViennaRNA/constraints/hard.c:1786:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:41,130 1786 | for (i = 0; i < num_bp; i++) 2023-10-01T09:00:41,131 | ^ 2023-10-01T09:00:41,131 src/ViennaRNA/constraints/hard.c: In function ‘hc_update_up’: 2023-10-01T09:00:41,132 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:41,133 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:00:41,133 | ^ 2023-10-01T09:00:41,134 src/ViennaRNA/constraints/hard.c:1873:29: note: in expansion of macro ‘MIN2’ 2023-10-01T09:00:41,134 1873 | hc->up_ext[i] = MIN2(n, 1 + hc->up_ext[i + 1]); 2023-10-01T09:00:41,135 | ^~~~ 2023-10-01T09:00:41,136 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T09:00:41,136 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:00:41,137 | ^~~ 2023-10-01T09:00:41,137 src/ViennaRNA/constraints/hard.c:1873:29: note: in expansion of macro ‘MIN2’ 2023-10-01T09:00:41,138 1873 | hc->up_ext[i] = MIN2(n, 1 + hc->up_ext[i + 1]); 2023-10-01T09:00:41,138 | ^~~~ 2023-10-01T09:00:41,138 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:41,139 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:00:41,139 | ^ 2023-10-01T09:00:41,140 src/ViennaRNA/constraints/hard.c:1883:28: note: in expansion of macro ‘MIN2’ 2023-10-01T09:00:41,140 1883 | hc->up_hp[i] = MIN2(n, 1 + hc->up_hp[i + 1]); 2023-10-01T09:00:41,141 | ^~~~ 2023-10-01T09:00:41,141 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T09:00:41,141 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:00:41,142 | ^~~ 2023-10-01T09:00:41,142 src/ViennaRNA/constraints/hard.c:1883:28: note: in expansion of macro ‘MIN2’ 2023-10-01T09:00:41,143 1883 | hc->up_hp[i] = MIN2(n, 1 + hc->up_hp[i + 1]); 2023-10-01T09:00:41,143 | ^~~~ 2023-10-01T09:00:41,144 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:41,145 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:00:41,145 | ^ 2023-10-01T09:00:41,146 src/ViennaRNA/constraints/hard.c:1893:29: note: in expansion of macro ‘MIN2’ 2023-10-01T09:00:41,146 1893 | hc->up_int[i] = MIN2(n, 1 + hc->up_int[i + 1]); 2023-10-01T09:00:41,147 | ^~~~ 2023-10-01T09:00:41,148 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T09:00:41,148 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:00:41,149 | ^~~ 2023-10-01T09:00:41,150 src/ViennaRNA/constraints/hard.c:1893:29: note: in expansion of macro ‘MIN2’ 2023-10-01T09:00:41,150 1893 | hc->up_int[i] = MIN2(n, 1 + hc->up_int[i + 1]); 2023-10-01T09:00:41,151 | ^~~~ 2023-10-01T09:00:41,151 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:41,152 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:00:41,153 | ^ 2023-10-01T09:00:41,153 src/ViennaRNA/constraints/hard.c:1903:28: note: in expansion of macro ‘MIN2’ 2023-10-01T09:00:41,154 1903 | hc->up_ml[i] = MIN2(n, 1 + hc->up_ml[i + 1]); 2023-10-01T09:00:41,155 | ^~~~ 2023-10-01T09:00:41,155 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T09:00:41,156 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:00:41,157 | ^~~ 2023-10-01T09:00:41,157 src/ViennaRNA/constraints/hard.c:1903:28: note: in expansion of macro ‘MIN2’ 2023-10-01T09:00:41,158 1903 | hc->up_ml[i] = MIN2(n, 1 + hc->up_ml[i + 1]); 2023-10-01T09:00:41,159 | ^~~~ 2023-10-01T09:00:44,052 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/ligand.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/ligand.o -fopenmp 2023-10-01T09:00:45,049 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod.o -fopenmp 2023-10-01T09:00:45,230 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘vrna_sc_mod’: 2023-10-01T09:00:45,231 src/ViennaRNA/constraints/sc_cb_mod.c:479:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:45,231 479 | ((msite - j - 1) >= md->min_loop_size)) { 2023-10-01T09:00:45,232 | ^~ 2023-10-01T09:00:45,232 src/ViennaRNA/constraints/sc_cb_mod.c:482:42: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:45,233 482 | if (fc->sequence_encoding[j] == pp_enc) { 2023-10-01T09:00:45,233 | ^~ 2023-10-01T09:00:45,234 src/ViennaRNA/constraints/sc_cb_mod.c:493:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:00:45,235 493 | ((j - msite - 1) >= md->min_loop_size)) { 2023-10-01T09:00:45,235 | ^~ 2023-10-01T09:00:45,236 src/ViennaRNA/constraints/sc_cb_mod.c:496:42: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:45,237 496 | if (fc->sequence_encoding[j] == pp_enc) { 2023-10-01T09:00:45,237 | ^~ 2023-10-01T09:00:45,238 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_stacks’: 2023-10-01T09:00:45,239 src/ViennaRNA/constraints/sc_cb_mod.c:761:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:00:45,239 761 | char nt[MAX_ALPHABET] = { 2023-10-01T09:00:45,240 | ^~ 2023-10-01T09:00:45,240 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_mismatches’: 2023-10-01T09:00:45,241 src/ViennaRNA/constraints/sc_cb_mod.c:856:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:00:45,242 856 | char nt[MAX_ALPHABET] = { 2023-10-01T09:00:45,242 | ^~ 2023-10-01T09:00:45,244 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_dangles’: 2023-10-01T09:00:45,245 src/ViennaRNA/constraints/sc_cb_mod.c:985:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:00:45,245 985 | char nt[MAX_ALPHABET] = { 2023-10-01T09:00:45,246 | ^~ 2023-10-01T09:00:45,247 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_terminal’: 2023-10-01T09:00:45,247 src/ViennaRNA/constraints/sc_cb_mod.c:1149:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:00:45,248 1149 | char nt[MAX_ALPHABET] = { 2023-10-01T09:00:45,249 | ^~ 2023-10-01T09:00:47,648 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod_parser.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod_parser.o -fopenmp 2023-10-01T09:00:48,363 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod_wrappers.o -fopenmp 2023-10-01T09:00:58,605 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/soft.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/soft.o -fopenmp 2023-10-01T09:00:58,828 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_bp’: 2023-10-01T09:00:58,828 src/ViennaRNA/constraints/soft.c:401:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:58,829 401 | (i > fc->length) || 2023-10-01T09:00:58,830 | ^ 2023-10-01T09:00:58,830 src/ViennaRNA/constraints/soft.c:403:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:58,831 403 | (j > fc->length)) { 2023-10-01T09:00:58,832 | ^ 2023-10-01T09:00:58,833 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_up’: 2023-10-01T09:00:58,833 src/ViennaRNA/constraints/soft.c:452:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:58,834 452 | if ((i < 1) || (i > fc->length)) { 2023-10-01T09:00:58,835 | ^ 2023-10-01T09:00:58,836 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_stack’: 2023-10-01T09:00:58,836 src/ViennaRNA/constraints/soft.c:547:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:58,837 547 | if ((i < 1) || (i > fc->length)) { 2023-10-01T09:00:58,837 | ^ 2023-10-01T09:00:58,838 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_stack_comparative’: 2023-10-01T09:00:58,839 src/ViennaRNA/constraints/soft.c:582:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:58,839 582 | if ((i < 1) || (i > fc->length)) { 2023-10-01T09:00:58,840 | ^ 2023-10-01T09:00:58,854 src/ViennaRNA/constraints/soft.c: In function ‘prepare_sc_stack_pf’: 2023-10-01T09:00:58,855 src/ViennaRNA/constraints/soft.c:1416:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:58,855 1416 | for (i = 0; i <= fc->length; ++i) 2023-10-01T09:00:58,856 | ^~ 2023-10-01T09:00:58,857 src/ViennaRNA/constraints/soft.c:1420:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:58,857 1420 | for (i = 1; i <= fc->length; ++i) 2023-10-01T09:00:58,858 | ^~ 2023-10-01T09:00:58,859 src/ViennaRNA/constraints/soft.c:1436:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:58,859 1436 | for (i = 0; i <= fc->a2s[s][fc->length]; i++) 2023-10-01T09:00:58,860 | ^~ 2023-10-01T09:00:58,860 src/ViennaRNA/constraints/soft.c:1440:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:00:58,861 1440 | for (i = 1; i <= fc->a2s[s][fc->length]; ++i) 2023-10-01T09:00:58,861 | ^~ 2023-10-01T09:01:00,325 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/soft_cb_multi.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/soft_cb_multi.o -fopenmp 2023-10-01T09:01:00,818 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/array.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/array.o -fopenmp 2023-10-01T09:01:00,993 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/basic_datastructures.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/basic_datastructures.o -fopenmp 2023-10-01T09:01:01,138 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/char_stream.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/char_stream.o -fopenmp 2023-10-01T09:01:01,288 src/ViennaRNA/datastructures/char_stream.c: In function ‘vrna_cstr_vprintf’: 2023-10-01T09:01:01,289 src/ViennaRNA/datastructures/char_stream.c:205:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:01,289 205 | if ((size_new > 0) && (l1 < SIZE_MAX) && ((SIZE_MAX - l1) > l2)) { 2023-10-01T09:01:01,290 | ^ 2023-10-01T09:01:01,291 src/ViennaRNA/datastructures/char_stream.c:205:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:01,291 205 | if ((size_new > 0) && (l1 < SIZE_MAX) && ((SIZE_MAX - l1) > l2)) { 2023-10-01T09:01:01,292 | ^ 2023-10-01T09:01:01,762 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/hash_tables.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/hash_tables.o -fopenmp 2023-10-01T09:01:01,921 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_get’: 2023-10-01T09:01:01,922 src/ViennaRNA/datastructures/hash_tables.c:126:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-01T09:01:01,923 126 | for (i = 0; i < entries->length; i++) { 2023-10-01T09:01:01,923 | ^ 2023-10-01T09:01:01,924 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_insert’: 2023-10-01T09:01:01,925 src/ViennaRNA/datastructures/hash_tables.c:157:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-01T09:01:01,925 157 | for (i = 0; i < entries->length; i++) { 2023-10-01T09:01:01,926 | ^ 2023-10-01T09:01:01,926 src/ViennaRNA/datastructures/hash_tables.c:165:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-01T09:01:01,927 165 | if (i >= entries->length) { 2023-10-01T09:01:01,927 | ^~ 2023-10-01T09:01:01,928 src/ViennaRNA/datastructures/hash_tables.c:166:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-01T09:01:01,928 166 | if (i >= entries->allocated_length) { 2023-10-01T09:01:01,929 | ^~ 2023-10-01T09:01:01,930 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_clear’: 2023-10-01T09:01:01,931 src/ViennaRNA/datastructures/hash_tables.c:204:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-01T09:01:01,932 204 | for (i = 0; i < entries->length; i++) { 2023-10-01T09:01:01,933 | ^ 2023-10-01T09:01:01,933 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_remove’: 2023-10-01T09:01:01,934 src/ViennaRNA/datastructures/hash_tables.c:249:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-01T09:01:01,935 249 | for (i = 0; i < entries->length; i++) { 2023-10-01T09:01:01,936 | ^ 2023-10-01T09:01:01,936 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_db_hash_func’: 2023-10-01T09:01:01,937 src/ViennaRNA/datastructures/hash_tables.c:339:7: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign] 2023-10-01T09:01:01,938 339 | k = ((vrna_ht_entry_db_t *)x)->structure; 2023-10-01T09:01:01,938 | ^ 2023-10-01T09:01:01,939 src/ViennaRNA/datastructures/hash_tables.c:340:39: warning: pointer targets in passing argument 1 of ‘strlen’ differ in signedness [-Wpointer-sign] 2023-10-01T09:01:01,940 340 | len = length = (unsigned int)strlen(k); 2023-10-01T09:01:01,941 | ^ 2023-10-01T09:01:01,941 | | 2023-10-01T09:01:01,942 | unsigned char * 2023-10-01T09:01:01,943 In file included from src/ViennaRNA/datastructures/hash_tables.c:6: 2023-10-01T09:01:01,944 /usr/include/string.h:407:35: note: expected ‘const char *’ but argument is of type ‘unsigned char *’ 2023-10-01T09:01:01,944 407 | extern size_t strlen (const char *__s) 2023-10-01T09:01:01,945 | ~~~~~~~~~~~~^~~ 2023-10-01T09:01:02,253 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/heap.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/heap.o -fopenmp 2023-10-01T09:01:02,737 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/lists.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/lists.o -fopenmp 2023-10-01T09:01:03,028 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/stream_output.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/stream_output.o -fopenmp 2023-10-01T09:01:03,352 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/string.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/string.o -fopenmp 2023-10-01T09:01:03,477 src/ViennaRNA/datastructures/string.c: In function ‘vrna_string_make_space_for’: 2023-10-01T09:01:03,478 src/ViennaRNA/datastructures/string.c:91:21: warning: variable ‘old_size’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:01:03,479 91 | size_t available, old_size, new_size; 2023-10-01T09:01:03,480 | ^~~~~~~~ 2023-10-01T09:01:03,593 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/dist_vars.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/dist_vars.o -fopenmp 2023-10-01T09:01:03,649 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/dp_matrices.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/dp_matrices.o -fopenmp 2023-10-01T09:01:05,642 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/duplex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/duplex.o -fopenmp 2023-10-01T09:01:05,900 src/ViennaRNA/duplex.c: In function ‘aliduplexfold_cu’: 2023-10-01T09:01:05,901 src/ViennaRNA/duplex.c:435:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:01:05,902 435 | if (strlen(s1[s]) != n1) 2023-10-01T09:01:05,902 | ^~ 2023-10-01T09:01:05,903 src/ViennaRNA/duplex.c:438:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:01:05,903 438 | if (strlen(s2[s]) != n2) 2023-10-01T09:01:05,904 | ^~ 2023-10-01T09:01:05,906 src/ViennaRNA/duplex.c: In function ‘aliduplex_subopt’: 2023-10-01T09:01:05,907 src/ViennaRNA/duplex.c:556:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:01:05,908 556 | if (strlen(s1[s]) != n1) 2023-10-01T09:01:05,908 | ^~ 2023-10-01T09:01:05,909 src/ViennaRNA/duplex.c:559:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:01:05,909 559 | if (strlen(s2[s]) != n2) 2023-10-01T09:01:05,910 | ^~ 2023-10-01T09:01:08,312 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/equilibrium_probs.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/equilibrium_probs.o -fopenmp 2023-10-01T09:01:08,614 In file included from src/ViennaRNA/equilibrium_probs.c:37: 2023-10-01T09:01:08,615 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-10-01T09:01:08,615 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,616 224 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:08,617 | ^ 2023-10-01T09:01:08,618 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-10-01T09:01:08,618 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,619 265 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:08,620 | ^ 2023-10-01T09:01:08,620 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-10-01T09:01:08,621 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,622 320 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:08,622 | ^ 2023-10-01T09:01:08,623 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-10-01T09:01:08,624 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,624 385 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:08,626 | ^ 2023-10-01T09:01:08,626 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-10-01T09:01:08,627 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,627 414 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:08,628 | ^ 2023-10-01T09:01:08,628 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-10-01T09:01:08,629 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,629 463 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:08,630 | ^ 2023-10-01T09:01:08,636 In file included from src/ViennaRNA/equilibrium_probs.c:39: 2023-10-01T09:01:08,636 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-10-01T09:01:08,637 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,637 73 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:08,638 | ^ 2023-10-01T09:01:08,639 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-10-01T09:01:08,639 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,640 112 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:08,640 | ^ 2023-10-01T09:01:08,641 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-10-01T09:01:08,642 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,642 143 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:08,643 | ^ 2023-10-01T09:01:08,644 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-10-01T09:01:08,645 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,645 185 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:08,646 | ^ 2023-10-01T09:01:08,647 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-10-01T09:01:08,647 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,648 224 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:08,649 | ^ 2023-10-01T09:01:08,649 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-10-01T09:01:08,650 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,651 730 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:08,651 | ^ 2023-10-01T09:01:08,652 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-10-01T09:01:08,653 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:08,653 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-10-01T09:01:08,654 | ^~ 2023-10-01T09:01:08,655 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-10-01T09:01:08,656 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,656 784 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:08,657 | ^ 2023-10-01T09:01:08,657 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-10-01T09:01:08,658 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,658 825 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:08,659 | ^ 2023-10-01T09:01:08,679 src/ViennaRNA/equilibrium_probs.c: In function ‘vrna_ensemble_defect_pt’: 2023-10-01T09:01:08,679 src/ViennaRNA/equilibrium_probs.c:406:14: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:08,680 406 | (pt[0] == fc->length) && 2023-10-01T09:01:08,681 | ^~ 2023-10-01T09:01:08,681 src/ViennaRNA/equilibrium_probs.c:428:22: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:08,682 428 | else if (pt[i] > i) 2023-10-01T09:01:08,682 | ^ 2023-10-01T09:01:08,691 src/ViennaRNA/equilibrium_probs.c: In function ‘get_ml_helper_arrays’: 2023-10-01T09:01:08,692 src/ViennaRNA/equilibrium_probs.c:958:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,692 958 | for (u = 0; u < domains_up->uniq_motif_count; u++) 2023-10-01T09:01:08,693 | ^ 2023-10-01T09:01:08,694 src/ViennaRNA/equilibrium_probs.c:959:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:08,694 959 | if (ml_helpers->ud_max_size < domains_up->uniq_motif_size[u]) 2023-10-01T09:01:08,695 | ^ 2023-10-01T09:01:08,696 src/ViennaRNA/equilibrium_probs.c:965:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,696 965 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-10-01T09:01:08,697 | ^~ 2023-10-01T09:01:08,698 src/ViennaRNA/equilibrium_probs.c:971:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,699 971 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-10-01T09:01:08,699 | ^~ 2023-10-01T09:01:08,700 src/ViennaRNA/equilibrium_probs.c: In function ‘free_ml_helper_arrays’: 2023-10-01T09:01:08,701 src/ViennaRNA/equilibrium_probs.c:989:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,701 989 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-10-01T09:01:08,702 | ^~ 2023-10-01T09:01:08,703 src/ViennaRNA/equilibrium_probs.c: In function ‘rotate_ml_helper_arrays_outer’: 2023-10-01T09:01:08,703 src/ViennaRNA/equilibrium_probs.c:1019:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,704 1019 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-10-01T09:01:08,705 | ^~ 2023-10-01T09:01:08,736 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_update_Y5’: 2023-10-01T09:01:08,738 src/ViennaRNA/equilibrium_probs.c:2281:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,739 2281 | if ((se[s] < l) && 2023-10-01T09:01:08,739 | ^ 2023-10-01T09:01:08,743 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_update_Y3’: 2023-10-01T09:01:08,745 src/ViennaRNA/equilibrium_probs.c:2391:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,745 2391 | if (start == l + 1) { 2023-10-01T09:01:08,746 | ^~ 2023-10-01T09:01:08,749 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_contrib’: 2023-10-01T09:01:08,751 src/ViennaRNA/equilibrium_probs.c:2505:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,752 2505 | else if (start == l + 1) 2023-10-01T09:01:08,752 | ^~ 2023-10-01T09:01:08,753 src/ViennaRNA/equilibrium_probs.c:2507:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:08,754 2507 | else if ((start > l + 1) && 2023-10-01T09:01:08,754 | ^ 2023-10-01T09:01:08,757 src/ViennaRNA/equilibrium_probs.c:2475:27: warning: variable ‘sc_split’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:01:08,757 2475 | sc_ext_exp_split sc_split; 2023-10-01T09:01:08,758 | ^~~~~~~~ 2023-10-01T09:01:08,775 src/ViennaRNA/equilibrium_probs.c: In function ‘ud_outside_mb_loops’: 2023-10-01T09:01:08,778 src/ViennaRNA/equilibrium_probs.c:3147:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:08,779 3147 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-10-01T09:01:08,779 | ^ 2023-10-01T09:01:08,794 src/ViennaRNA/equilibrium_probs.c: In function ‘ud_outside_mb_loops2’: 2023-10-01T09:01:08,797 src/ViennaRNA/equilibrium_probs.c:3443:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:08,798 3443 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-10-01T09:01:08,798 | ^ 2023-10-01T09:01:20,130 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/eval.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval.o -fopenmp 2023-10-01T09:01:20,431 src/ViennaRNA/eval.c: In function ‘energy_of_extLoop_pt’: 2023-10-01T09:01:20,431 src/ViennaRNA/eval.c:663:34: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:20,432 663 | if ((pt[i] != 0) && (pt[i] > i)) { 2023-10-01T09:01:20,432 | ^ 2023-10-01T09:01:20,438 src/ViennaRNA/eval.c: In function ‘energy_of_ext_loop_components’: 2023-10-01T09:01:20,439 src/ViennaRNA/eval.c:929:19: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:20,440 929 | if (pt[i] > i) { 2023-10-01T09:01:20,440 | ^ 2023-10-01T09:01:20,453 src/ViennaRNA/eval.c: In function ‘energy_of_ml_pt’: 2023-10-01T09:01:20,454 src/ViennaRNA/eval.c:1683:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:20,454 1683 | for (ss = 0; ss < n_seq; ss++) 2023-10-01T09:01:20,456 | ^ 2023-10-01T09:01:20,456 src/ViennaRNA/eval.c:1721:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:20,457 1721 | for (ss = 0; ss < n_seq; ss++) { 2023-10-01T09:01:20,457 | ^ 2023-10-01T09:01:20,459 src/ViennaRNA/eval.c:1729:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:20,459 1729 | for (ss = 0; ss < n_seq; ss++) 2023-10-01T09:01:20,460 | ^ 2023-10-01T09:01:20,462 src/ViennaRNA/eval.c:1751:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:20,462 1751 | for (ss = 0; ss < n_seq; ss++) { 2023-10-01T09:01:20,463 | ^ 2023-10-01T09:01:20,464 src/ViennaRNA/eval.c:1766:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:20,464 1766 | for (ss = 0; ss < n_seq; ss++) { 2023-10-01T09:01:20,465 | ^ 2023-10-01T09:01:20,466 src/ViennaRNA/eval.c:1774:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:20,467 1774 | for (ss = 0; ss < n_seq; ss++) 2023-10-01T09:01:20,467 | ^ 2023-10-01T09:01:20,468 src/ViennaRNA/eval.c:1782:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:20,469 1782 | for (ss = 0; ss < n_seq; ss++) { 2023-10-01T09:01:20,469 | ^ 2023-10-01T09:01:20,471 src/ViennaRNA/eval.c:1834:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:20,472 1834 | for (ss = 0; ss < n_seq; ss++) { 2023-10-01T09:01:20,473 | ^ 2023-10-01T09:01:20,474 src/ViennaRNA/eval.c:1851:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:20,475 1851 | for (ss = 0; ss < n_seq; ss++) { 2023-10-01T09:01:20,475 | ^ 2023-10-01T09:01:20,476 src/ViennaRNA/eval.c:1859:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:20,477 1859 | for (ss = 0; ss < n_seq; ss++) 2023-10-01T09:01:20,478 | ^ 2023-10-01T09:01:20,478 src/ViennaRNA/eval.c:1866:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:20,479 1866 | for (ss = 0; ss < n_seq; ss++) { 2023-10-01T09:01:20,480 | ^ 2023-10-01T09:01:20,483 src/ViennaRNA/eval.c:1945:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:20,484 1945 | while (p <= (unsigned int)pt[0] && pt[p] == 0) 2023-10-01T09:01:20,484 | ^~ 2023-10-01T09:01:20,486 src/ViennaRNA/eval.c:1956:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:20,487 1956 | if (p == (unsigned int)pt[0] + 1) { 2023-10-01T09:01:20,487 | ^~ 2023-10-01T09:01:20,489 src/ViennaRNA/eval.c:1972:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:20,490 1972 | if ((sn[i1] == sn[i1 + 1]) && (i1 < (unsigned int)s[0])) 2023-10-01T09:01:20,491 | ^ 2023-10-01T09:01:20,492 src/ViennaRNA/eval.c:2020:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:20,493 2020 | if (i == (unsigned int)pt[p]) 2023-10-01T09:01:20,493 | ^~ 2023-10-01T09:01:23,882 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/eval_covariance.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval_covariance.o -fopenmp 2023-10-01T09:01:24,314 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/eval_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval_wrappers.o -fopenmp 2023-10-01T09:01:25,096 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/fold.o -fopenmp 2023-10-01T09:01:25,873 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/fold_compound.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/fold_compound.o -fopenmp 2023-10-01T09:01:26,138 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_free’: 2023-10-01T09:01:26,139 src/ViennaRNA/fold_compound.c:137:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:26,139 137 | for (s = 0; s < fc->n_seq; s++) { 2023-10-01T09:01:26,140 | ^ 2023-10-01T09:01:26,141 src/ViennaRNA/fold_compound.c:156:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:26,141 156 | for (s = 0; s < fc->n_seq; s++) 2023-10-01T09:01:26,142 | ^ 2023-10-01T09:01:26,143 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_comparative2’: 2023-10-01T09:01:26,143 src/ViennaRNA/fold_compound.c:311:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:26,144 311 | } else if (length > vrna_sequence_length_max(options)) { 2023-10-01T09:01:26,145 | ^ 2023-10-01T09:01:26,145 src/ViennaRNA/fold_compound.c:318:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:01:26,146 318 | if (strlen(sequences[s]) != length) { 2023-10-01T09:01:26,147 | ^~ 2023-10-01T09:01:26,148 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_TwoD’: 2023-10-01T09:01:26,148 src/ViennaRNA/fold_compound.c:417:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:26,149 417 | } else if (length > vrna_sequence_length_max(options)) { 2023-10-01T09:01:26,149 | ^ 2023-10-01T09:01:26,897 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/gquad.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/gquad.o -fopenmp 2023-10-01T09:01:27,149 In file included from src/ViennaRNA/gquad.c:21: 2023-10-01T09:01:27,150 src/ViennaRNA/gquad.c: In function ‘get_gquad_pf_matrix_comparative’: 2023-10-01T09:01:27,151 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:27,151 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:01:27,152 | ^ 2023-10-01T09:01:27,152 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-10-01T09:01:27,153 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-10-01T09:01:27,153 | ^~~~ 2023-10-01T09:01:27,154 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-10-01T09:01:27,155 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-10-01T09:01:27,155 | ^~~~~~~~~~~~~~ 2023-10-01T09:01:27,156 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T09:01:27,157 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:01:27,158 | ^~~ 2023-10-01T09:01:27,158 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-10-01T09:01:27,159 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-10-01T09:01:27,160 | ^~~~ 2023-10-01T09:01:27,161 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-10-01T09:01:27,161 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-10-01T09:01:27,162 | ^~~~~~~~~~~~~~ 2023-10-01T09:01:27,163 src/ViennaRNA/gquad.c:40:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:27,164 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-10-01T09:01:27,164 | ^~ 2023-10-01T09:01:27,165 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-10-01T09:01:27,166 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-10-01T09:01:27,166 | ^~~~~~~~~~~~~~ 2023-10-01T09:01:27,167 src/ViennaRNA/gquad.c: In function ‘get_gquad_ali_matrix’: 2023-10-01T09:01:27,167 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:27,168 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:01:27,169 | ^ 2023-10-01T09:01:27,169 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-10-01T09:01:27,170 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-10-01T09:01:27,171 | ^~~~ 2023-10-01T09:01:27,172 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-10-01T09:01:27,172 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-10-01T09:01:27,173 | ^~~~~~~~~~~~~~ 2023-10-01T09:01:27,174 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T09:01:27,174 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:01:27,174 | ^~~ 2023-10-01T09:01:27,175 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-10-01T09:01:27,175 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-10-01T09:01:27,176 | ^~~~ 2023-10-01T09:01:27,176 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-10-01T09:01:27,177 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-10-01T09:01:27,177 | ^~~~~~~~~~~~~~ 2023-10-01T09:01:27,178 src/ViennaRNA/gquad.c:40:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:27,178 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-10-01T09:01:27,179 | ^~ 2023-10-01T09:01:27,179 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-10-01T09:01:27,180 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-10-01T09:01:27,180 | ^~~~~~~~~~~~~~ 2023-10-01T09:01:27,181 src/ViennaRNA/gquad.c: In function ‘E_gquad_ali_penalty’: 2023-10-01T09:01:27,181 src/ViennaRNA/gquad.c:1338:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:27,182 1338 | if (mm[1] > P->gquadLayerMismatchMax) 2023-10-01T09:01:27,182 | ^ 2023-10-01T09:01:27,183 src/ViennaRNA/gquad.c: In function ‘exp_E_gquad_ali_penalty’: 2023-10-01T09:01:27,184 src/ViennaRNA/gquad.c:1357:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:27,185 1357 | if (mm[1] > pf->gquadLayerMismatchMax) 2023-10-01T09:01:27,185 | ^ 2023-10-01T09:01:27,186 src/ViennaRNA/gquad.c: In function ‘count_gquad_layer_mismatches’: 2023-10-01T09:01:27,187 src/ViennaRNA/gquad.c:1439:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:27,188 1439 | if (mismatch >= 2 * (L - 1)) 2023-10-01T09:01:27,188 | ^~ 2023-10-01T09:01:29,164 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/grammar.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/grammar.o -fopenmp 2023-10-01T09:01:29,464 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/heat_capacity.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/heat_capacity.o -fopenmp 2023-10-01T09:01:29,820 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/inverse.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/inverse.o -fopenmp 2023-10-01T09:01:30,045 src/ViennaRNA/inverse.c: In function ‘adaptive_walk’: 2023-10-01T09:01:30,046 src/ViennaRNA/inverse.c:114:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:01:30,047 114 | if (strlen(target) != len) 2023-10-01T09:01:30,048 | ^~ 2023-10-01T09:01:30,054 src/ViennaRNA/inverse.c: In function ‘make_ptable’: 2023-10-01T09:01:30,055 src/ViennaRNA/inverse.c:340:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:01:30,056 340 | for (i = 0; i < strlen(structure); i++) { 2023-10-01T09:01:30,056 | ^ 2023-10-01T09:01:30,057 src/ViennaRNA/inverse.c: In function ‘inverse_fold’: 2023-10-01T09:01:30,058 src/ViennaRNA/inverse.c:392:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:01:30,058 392 | if (strlen(start) != len) 2023-10-01T09:01:30,059 | ^~ 2023-10-01T09:01:30,063 src/ViennaRNA/inverse.c: In function ‘make_start’: 2023-10-01T09:01:30,064 src/ViennaRNA/inverse.c:514:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:01:30,065 514 | for (i = 0; i < strlen(start); i++) 2023-10-01T09:01:30,065 | ^ 2023-10-01T09:01:30,066 src/ViennaRNA/inverse.c:516:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:01:30,067 516 | for (i = 0; i < strlen(symbolset); i++) 2023-10-01T09:01:30,068 | ^ 2023-10-01T09:01:30,962 src/ViennaRNA/inverse.c: In function ‘inverse_fold’: 2023-10-01T09:01:30,963 src/ViennaRNA/inverse.c:369:5: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2023-10-01T09:01:30,963 369 | strncpy(wstruct, structure + i, j - i + 1); \ 2023-10-01T09:01:30,964 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:01:30,965 src/ViennaRNA/inverse.c:423:7: note: in expansion of macro ‘WALK’ 2023-10-01T09:01:30,965 423 | WALK(0, len - 1); 2023-10-01T09:01:30,966 | ^~~~ 2023-10-01T09:01:30,967 src/ViennaRNA/inverse.c:391:9: note: length computed here 2023-10-01T09:01:30,968 391 | len = strlen(structure); 2023-10-01T09:01:30,968 | ^~~~~~~~~~~~~~~~~ 2023-10-01T09:01:31,207 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/io/file_formats.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/file_formats.o -fopenmp 2023-10-01T09:01:31,420 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect’: 2023-10-01T09:01:31,421 src/ViennaRNA/io/file_formats.c:202:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:01:31,422 202 | for (i = 0; i < strlen(seq) - 1; i++) { 2023-10-01T09:01:31,423 | ^ 2023-10-01T09:01:31,429 src/ViennaRNA/io/file_formats.c: In function ‘vrna_extract_record_rest_structure’: 2023-10-01T09:01:31,430 src/ViennaRNA/io/file_formats.c:600:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:31,431 600 | if ((length > 0) && (r - 1 == length)) 2023-10-01T09:01:31,431 | ^~ 2023-10-01T09:01:31,441 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2023-10-01T09:01:31,442 src/ViennaRNA/io/file_formats.c:919:29: warning: variable ‘tok4’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:01:31,443 919 | long tok1, tok3, tok4, tok5, tok6; 2023-10-01T09:01:31,443 | ^~~~ 2023-10-01T09:01:32,216 src/ViennaRNA/io/file_formats.c:1056:12: warning: ‘tok6’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:01:32,216 1056 | if (!process_ct_nt_line(ct_entry, tok1, tok2, tok3, tok5, tok6)) 2023-10-01T09:01:32,217 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:01:32,217 src/ViennaRNA/io/file_formats.c:919:41: note: ‘tok6’ was declared here 2023-10-01T09:01:32,217 919 | long tok1, tok3, tok4, tok5, tok6; 2023-10-01T09:01:32,218 | ^~~~ 2023-10-01T09:01:32,218 src/ViennaRNA/io/file_formats.c:1056:12: warning: ‘tok5’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:01:32,219 1056 | if (!process_ct_nt_line(ct_entry, tok1, tok2, tok3, tok5, tok6)) 2023-10-01T09:01:32,219 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:01:32,220 src/ViennaRNA/io/file_formats.c:919:35: note: ‘tok5’ was declared here 2023-10-01T09:01:32,220 919 | long tok1, tok3, tok4, tok5, tok6; 2023-10-01T09:01:32,221 | ^~~~ 2023-10-01T09:01:32,221 In function ‘process_ct_nt_line’, 2023-10-01T09:01:32,222 inlined from ‘vrna_file_connect_read_record’ at src/ViennaRNA/io/file_formats.c:1056:12: 2023-10-01T09:01:32,223 src/ViennaRNA/io/file_formats.c:1236:22: warning: ‘tok3’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:01:32,223 1236 | (predecessor == 0)) { 2023-10-01T09:01:32,224 | ~~~~~~~~~~~~~^~~~~ 2023-10-01T09:01:32,224 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2023-10-01T09:01:32,225 src/ViennaRNA/io/file_formats.c:919:23: note: ‘tok3’ was declared here 2023-10-01T09:01:32,226 919 | long tok1, tok3, tok4, tok5, tok6; 2023-10-01T09:01:32,226 | ^~~~ 2023-10-01T09:01:32,227 In function ‘process_ct_nt_line’, 2023-10-01T09:01:32,228 inlined from ‘vrna_file_connect_read_record’ at src/ViennaRNA/io/file_formats.c:1056:12: 2023-10-01T09:01:32,228 src/ViennaRNA/io/file_formats.c:1242:43: warning: ‘tok2’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:01:32,229 1242 | data->sequence[data->sequence_pos++] = nucleotide; 2023-10-01T09:01:32,230 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T09:01:32,230 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2023-10-01T09:01:32,231 src/ViennaRNA/io/file_formats.c:916:33: note: ‘tok2’ was declared here 2023-10-01T09:01:32,231 916 | char c, *line, *end, tok2, **tok, **ptr; 2023-10-01T09:01:32,232 | ^~~~ 2023-10-01T09:01:32,466 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/io/file_formats_msa.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/file_formats_msa.o -fopenmp 2023-10-01T09:01:32,682 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_stockholm_alignment’: 2023-10-01T09:01:32,683 src/ViennaRNA/io/file_formats_msa.c:653:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:01:32,684 653 | for (i = 0; i < strlen(tmp_seq); i++) 2023-10-01T09:01:32,684 | ^ 2023-10-01T09:01:32,688 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_clustal_alignment’: 2023-10-01T09:01:32,689 src/ViennaRNA/io/file_formats_msa.c:902:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:01:32,689 902 | for (i = 0; i < strlen(seq); i++) 2023-10-01T09:01:32,690 | ^ 2023-10-01T09:01:33,575 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/io/io_utils.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/io_utils.o -fopenmp 2023-10-01T09:01:33,938 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/findpath.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/findpath.o -fopenmp 2023-10-01T09:01:34,755 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/local_neighbors.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/local_neighbors.o -fopenmp 2023-10-01T09:01:34,886 src/ViennaRNA/landscape/local_neighbors.c: In function ‘insertions’: 2023-10-01T09:01:34,887 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:34,887 25 | if (ptable[idx] > idx) { \ 2023-10-01T09:01:34,888 | ^ 2023-10-01T09:01:34,889 src/ViennaRNA/landscape/local_neighbors.c:351:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-01T09:01:34,889 351 | FOR_UNPAIRED(pt, i, i = first_i, i <= last_i, i++, { 2023-10-01T09:01:34,890 | ^~~~~~~~~~~~ 2023-10-01T09:01:34,891 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:34,891 25 | if (ptable[idx] > idx) { \ 2023-10-01T09:01:34,892 | ^ 2023-10-01T09:01:34,893 src/ViennaRNA/landscape/local_neighbors.c:27:16: note: in definition of macro ‘FOR_UNPAIRED’ 2023-10-01T09:01:34,893 27 | } else { code } \ 2023-10-01T09:01:34,894 | ^~~~ 2023-10-01T09:01:34,895 src/ViennaRNA/landscape/local_neighbors.c:352:7: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-01T09:01:34,895 352 | FOR_UNPAIRED(pt, j, j = i + 1, j <= last_j, j++, { 2023-10-01T09:01:34,896 | ^~~~~~~~~~~~ 2023-10-01T09:01:34,897 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:34,898 25 | if (ptable[idx] > idx) { \ 2023-10-01T09:01:34,899 | ^ 2023-10-01T09:01:34,899 src/ViennaRNA/landscape/local_neighbors.c:358:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-01T09:01:34,900 358 | FOR_UNPAIRED(pt, i, i = first_i, i <= last_i, i++, { 2023-10-01T09:01:34,900 | ^~~~~~~~~~~~ 2023-10-01T09:01:34,901 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:34,901 25 | if (ptable[idx] > idx) { \ 2023-10-01T09:01:34,901 | ^ 2023-10-01T09:01:34,902 src/ViennaRNA/landscape/local_neighbors.c:27:16: note: in definition of macro ‘FOR_UNPAIRED’ 2023-10-01T09:01:34,902 27 | } else { code } \ 2023-10-01T09:01:34,903 | ^~~~ 2023-10-01T09:01:34,904 src/ViennaRNA/landscape/local_neighbors.c:359:7: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-01T09:01:34,904 359 | FOR_UNPAIRED(pt, j, j = first_j, j <= last_j, j++, { 2023-10-01T09:01:34,905 | ^~~~~~~~~~~~ 2023-10-01T09:01:34,905 src/ViennaRNA/landscape/local_neighbors.c: In function ‘deletion_range’: 2023-10-01T09:01:34,906 src/ViennaRNA/landscape/local_neighbors.c:32:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:34,906 32 | if (ptable[idx] > idx) { \ 2023-10-01T09:01:34,907 | ^ 2023-10-01T09:01:34,907 src/ViennaRNA/landscape/local_neighbors.c:379:3: note: in expansion of macro ‘FOR_PAIRED’ 2023-10-01T09:01:34,908 379 | FOR_PAIRED(pt, i, i = start, i <= stop, i++, { 2023-10-01T09:01:34,909 | ^~~~~~~~~~ 2023-10-01T09:01:34,909 src/ViennaRNA/landscape/local_neighbors.c: In function ‘shift_pos’: 2023-10-01T09:01:34,910 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:34,911 25 | if (ptable[idx] > idx) { \ 2023-10-01T09:01:34,912 | ^ 2023-10-01T09:01:34,912 src/ViennaRNA/landscape/local_neighbors.c:398:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-01T09:01:34,913 398 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2023-10-01T09:01:34,914 | ^~~~~~~~~~~~ 2023-10-01T09:01:34,914 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:34,915 25 | if (ptable[idx] > idx) { \ 2023-10-01T09:01:34,916 | ^ 2023-10-01T09:01:34,916 src/ViennaRNA/landscape/local_neighbors.c:403:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-01T09:01:34,917 403 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2023-10-01T09:01:34,917 | ^~~~~~~~~~~~ 2023-10-01T09:01:34,918 src/ViennaRNA/landscape/local_neighbors.c: In function ‘shift_both’: 2023-10-01T09:01:34,918 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:34,919 25 | if (ptable[idx] > idx) { \ 2023-10-01T09:01:34,919 | ^ 2023-10-01T09:01:34,920 src/ViennaRNA/landscape/local_neighbors.c:425:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-01T09:01:34,921 425 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2023-10-01T09:01:34,921 | ^~~~~~~~~~~~ 2023-10-01T09:01:34,922 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:34,923 25 | if (ptable[idx] > idx) { \ 2023-10-01T09:01:34,923 | ^ 2023-10-01T09:01:34,924 src/ViennaRNA/landscape/local_neighbors.c:433:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-01T09:01:34,925 433 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2023-10-01T09:01:34,925 | ^~~~~~~~~~~~ 2023-10-01T09:01:34,926 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:34,926 25 | if (ptable[idx] > idx) { \ 2023-10-01T09:01:34,927 | ^ 2023-10-01T09:01:34,927 src/ViennaRNA/landscape/local_neighbors.c:441:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-01T09:01:34,927 441 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2023-10-01T09:01:34,929 | ^~~~~~~~~~~~ 2023-10-01T09:01:34,929 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_local_nb_insertion’: 2023-10-01T09:01:34,930 src/ViennaRNA/landscape/local_neighbors.c:463:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable] 2023-10-01T09:01:34,930 463 | int min_loop_size = fc->params->model_details.min_loop_size; 2023-10-01T09:01:34,931 | ^~~~~~~~~~~~~ 2023-10-01T09:01:34,931 src/ViennaRNA/landscape/local_neighbors.c:462:23: warning: unused variable ‘k’ [-Wunused-variable] 2023-10-01T09:01:34,932 462 | int i, j, k, mi, mj, enc5, enc3; 2023-10-01T09:01:34,933 | ^ 2023-10-01T09:01:34,933 src/ViennaRNA/landscape/local_neighbors.c:462:20: warning: unused variable ‘j’ [-Wunused-variable] 2023-10-01T09:01:34,934 462 | int i, j, k, mi, mj, enc5, enc3; 2023-10-01T09:01:34,935 | ^ 2023-10-01T09:01:34,935 src/ViennaRNA/landscape/local_neighbors.c:461:17: warning: unused variable ‘n’ [-Wunused-variable] 2023-10-01T09:01:34,936 461 | unsigned int n = fc->length; 2023-10-01T09:01:34,937 | ^ 2023-10-01T09:01:34,938 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_local_nb_deletion’: 2023-10-01T09:01:34,938 src/ViennaRNA/landscape/local_neighbors.c:578:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable] 2023-10-01T09:01:34,939 578 | int min_loop_size = fc->params->model_details.min_loop_size; 2023-10-01T09:01:34,940 | ^~~~~~~~~~~~~ 2023-10-01T09:01:34,941 src/ViennaRNA/landscape/local_neighbors.c:577:23: warning: unused variable ‘k’ [-Wunused-variable] 2023-10-01T09:01:34,941 577 | int i, j, k, enc5, enc3; 2023-10-01T09:01:34,942 | ^ 2023-10-01T09:01:34,943 src/ViennaRNA/landscape/local_neighbors.c:577:20: warning: unused variable ‘j’ [-Wunused-variable] 2023-10-01T09:01:34,943 577 | int i, j, k, enc5, enc3; 2023-10-01T09:01:34,944 | ^ 2023-10-01T09:01:34,945 src/ViennaRNA/landscape/local_neighbors.c:576:17: warning: unused variable ‘n’ [-Wunused-variable] 2023-10-01T09:01:34,945 576 | unsigned int n = fc->length; 2023-10-01T09:01:34,946 | ^ 2023-10-01T09:01:34,947 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_conflicts_local_nb_insertion’: 2023-10-01T09:01:34,947 src/ViennaRNA/landscape/local_neighbors.c:970:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable] 2023-10-01T09:01:34,948 970 | int min_loop_size = fc->params->model_details.min_loop_size; 2023-10-01T09:01:34,949 | ^~~~~~~~~~~~~ 2023-10-01T09:01:34,949 src/ViennaRNA/landscape/local_neighbors.c:968:17: warning: unused variable ‘n’ [-Wunused-variable] 2023-10-01T09:01:34,950 968 | unsigned int n = fc->length; 2023-10-01T09:01:34,951 | ^ 2023-10-01T09:01:34,952 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_conflicts_local_nb_deletion’: 2023-10-01T09:01:34,952 src/ViennaRNA/landscape/local_neighbors.c:1073:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable] 2023-10-01T09:01:34,953 1073 | int min_loop_size = fc->params->model_details.min_loop_size; 2023-10-01T09:01:34,953 | ^~~~~~~~~~~~~ 2023-10-01T09:01:34,954 src/ViennaRNA/landscape/local_neighbors.c:1072:20: warning: unused variable ‘j’ [-Wunused-variable] 2023-10-01T09:01:34,954 1072 | int i, j, enc5, enc3; 2023-10-01T09:01:34,955 | ^ 2023-10-01T09:01:34,955 src/ViennaRNA/landscape/local_neighbors.c:1072:17: warning: unused variable ‘i’ [-Wunused-variable] 2023-10-01T09:01:34,956 1072 | int i, j, enc5, enc3; 2023-10-01T09:01:34,957 | ^ 2023-10-01T09:01:34,957 src/ViennaRNA/landscape/local_neighbors.c:1071:17: warning: unused variable ‘n’ [-Wunused-variable] 2023-10-01T09:01:34,958 1071 | unsigned int n = fc->length; 2023-10-01T09:01:34,958 | ^ 2023-10-01T09:01:34,959 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_conflicts_local_nb_shift’: 2023-10-01T09:01:34,959 src/ViennaRNA/landscape/local_neighbors.c:1100:17: warning: unused variable ‘n’ [-Wunused-variable] 2023-10-01T09:01:34,960 1100 | unsigned int n = fc->length; 2023-10-01T09:01:34,960 | ^ 2023-10-01T09:01:37,902 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/move.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/move.o -fopenmp 2023-10-01T09:01:38,214 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/neighbor.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/neighbor.o -fopenmp 2023-10-01T09:01:38,395 In file included from src/ViennaRNA/pair_mat.h:5, 2023-10-01T09:01:38,395 from src/ViennaRNA/landscape/neighbor.c:6: 2023-10-01T09:01:38,396 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_right’: 2023-10-01T09:01:38,397 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:38,398 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:01:38,398 | ^ 2023-10-01T09:01:38,399 src/ViennaRNA/landscape/neighbor.c:372:17: note: in expansion of macro ‘MIN2’ 2023-10-01T09:01:38,399 372 | int length = MIN2(vc->length + 1, end); 2023-10-01T09:01:38,400 | ^~~~ 2023-10-01T09:01:38,401 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T09:01:38,401 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:01:38,402 | ^~~ 2023-10-01T09:01:38,403 src/ViennaRNA/landscape/neighbor.c:372:17: note: in expansion of macro ‘MIN2’ 2023-10-01T09:01:38,404 372 | int length = MIN2(vc->length + 1, end); 2023-10-01T09:01:38,404 | ^~~~ 2023-10-01T09:01:38,405 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_i_from_right’: 2023-10-01T09:01:38,406 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:38,406 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:01:38,407 | ^ 2023-10-01T09:01:38,407 src/ViennaRNA/landscape/neighbor.c:500:17: note: in expansion of macro ‘MIN2’ 2023-10-01T09:01:38,408 500 | int length = MIN2(vc->length, end); 2023-10-01T09:01:38,408 | ^~~~ 2023-10-01T09:01:38,409 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T09:01:38,410 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:01:38,410 | ^~~ 2023-10-01T09:01:38,411 src/ViennaRNA/landscape/neighbor.c:500:17: note: in expansion of macro ‘MIN2’ 2023-10-01T09:01:38,411 500 | int length = MIN2(vc->length, end); 2023-10-01T09:01:38,412 | ^~~~ 2023-10-01T09:01:38,422 src/ViennaRNA/landscape/neighbor.c: In function ‘move_nxt_val_bp_right’: 2023-10-01T09:01:38,424 src/ViennaRNA/landscape/neighbor.c:1719:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:01:38,424 1719 | while (j <= length && pt[j] > j) // '(' 2023-10-01T09:01:38,425 | ^~ 2023-10-01T09:01:38,426 src/ViennaRNA/landscape/neighbor.c:1721:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:01:38,426 1721 | if (j > length || (pt[j] <= j && pt[j] > 0)) // ')' /* here, the current loop ends */ 2023-10-01T09:01:38,427 | ^ 2023-10-01T09:01:38,428 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpins’: 2023-10-01T09:01:38,429 src/ViennaRNA/landscape/neighbor.c:1749:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:38,429 1749 | for (i = 1; i <= vc->length; i++) 2023-10-01T09:01:38,430 | ^~ 2023-10-01T09:01:38,431 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpdel’: 2023-10-01T09:01:38,432 src/ViennaRNA/landscape/neighbor.c:1834:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:38,433 1834 | for (i = 1; i <= vc->length; i++) 2023-10-01T09:01:38,434 | ^~ 2023-10-01T09:01:38,435 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpshift’: 2023-10-01T09:01:38,436 src/ViennaRNA/landscape/neighbor.c:1915:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:38,437 1915 | for (i = 1; i <= vc->length; i++) 2023-10-01T09:01:38,438 | ^~ 2023-10-01T09:01:38,439 src/ViennaRNA/landscape/neighbor.c:1927:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:38,439 1927 | if (j < vc->length) { 2023-10-01T09:01:38,440 | ^ 2023-10-01T09:01:38,441 src/ViennaRNA/landscape/neighbor.c:1929:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:38,441 1929 | if (k >= 1 && k < vc->length && k != i - 1 && pt_tmp[k + 1] == 0 && 2023-10-01T09:01:38,442 | ^ 2023-10-01T09:01:40,671 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/walk.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/walk.o -fopenmp 2023-10-01T09:01:40,842 src/ViennaRNA/landscape/walk.c:140:1: warning: ‘isShift’ defined but not used [-Wunused-function] 2023-10-01T09:01:40,843 140 | isShift(vrna_move_t *m) 2023-10-01T09:01:40,843 | ^~~~~~~ 2023-10-01T09:01:40,844 In file included from src/ViennaRNA/landscape/walk.c:24: 2023-10-01T09:01:40,844 src/ViennaRNA/landscape/local_neighbors.inc:70:1: warning: ‘free_incremental_movelist’ defined but not used [-Wunused-function] 2023-10-01T09:01:40,845 70 | free_incremental_movelist(struct movelist *m) 2023-10-01T09:01:40,845 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:01:40,846 src/ViennaRNA/landscape/local_neighbors.inc:52:1: warning: ‘init_incremental_movelist’ defined but not used [-Wunused-function] 2023-10-01T09:01:40,846 52 | init_incremental_movelist(unsigned int n) 2023-10-01T09:01:40,847 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:01:40,847 src/ViennaRNA/landscape/local_neighbors.inc:17:1: warning: ‘add_to_incremental_move_list’ defined but not used [-Wunused-function] 2023-10-01T09:01:40,848 17 | add_to_incremental_move_list(vrna_fold_compound_t *fc, 2023-10-01T09:01:40,848 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:01:41,267 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/external.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/external.o -fopenmp 2023-10-01T09:01:41,536 In file included from src/ViennaRNA/loops/external.c:36: 2023-10-01T09:01:41,536 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-10-01T09:01:41,537 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,538 865 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:41,538 | ^ 2023-10-01T09:01:41,539 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-10-01T09:01:41,540 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,541 898 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:41,541 | ^ 2023-10-01T09:01:41,542 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-10-01T09:01:41,542 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,543 969 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:41,544 | ^ 2023-10-01T09:01:41,544 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-10-01T09:01:41,545 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,546 993 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:41,546 | ^ 2023-10-01T09:01:41,547 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-10-01T09:01:41,548 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,549 1121 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:41,549 | ^ 2023-10-01T09:01:41,550 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-10-01T09:01:41,550 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,551 1145 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:41,551 | ^ 2023-10-01T09:01:41,551 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-10-01T09:01:41,552 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,552 1292 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:41,553 | ^ 2023-10-01T09:01:41,553 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-10-01T09:01:41,554 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,554 1320 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:41,555 | ^ 2023-10-01T09:01:41,555 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-10-01T09:01:41,556 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,557 1348 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:41,557 | ^ 2023-10-01T09:01:41,558 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-10-01T09:01:41,559 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,559 1404 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:41,560 | ^ 2023-10-01T09:01:41,560 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-10-01T09:01:41,561 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,562 1426 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:41,562 | ^ 2023-10-01T09:01:41,563 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-10-01T09:01:41,564 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,564 1450 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:41,565 | ^ 2023-10-01T09:01:41,565 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-10-01T09:01:41,566 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,567 1596 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:41,567 | ^ 2023-10-01T09:01:41,568 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-10-01T09:01:41,569 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,569 1628 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:41,570 | ^ 2023-10-01T09:01:41,571 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-10-01T09:01:41,571 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,572 1677 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:41,573 | ^ 2023-10-01T09:01:41,573 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-10-01T09:01:41,574 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,574 1698 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:41,575 | ^ 2023-10-01T09:01:41,582 In file included from src/ViennaRNA/loops/external.c:14: 2023-10-01T09:01:41,582 src/ViennaRNA/loops/external.c: In function ‘f3_get_stem_contributions_d0’: 2023-10-01T09:01:41,583 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,583 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:01:41,583 | ^ 2023-10-01T09:01:41,584 src/ViennaRNA/loops/external.c:1000:11: note: in expansion of macro ‘MIN2’ 2023-10-01T09:01:41,585 1000 | max_j = MIN2(length - 1, i + maxdist); 2023-10-01T09:01:41,585 | ^~~~ 2023-10-01T09:01:41,586 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T09:01:41,586 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:01:41,587 | ^~~ 2023-10-01T09:01:41,588 src/ViennaRNA/loops/external.c:1000:11: note: in expansion of macro ‘MIN2’ 2023-10-01T09:01:41,589 1000 | max_j = MIN2(length - 1, i + maxdist); 2023-10-01T09:01:41,589 | ^~~~ 2023-10-01T09:01:41,590 src/ViennaRNA/loops/external.c:1070:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:41,591 1070 | if (length <= i + maxdist) { 2023-10-01T09:01:41,591 | ^~ 2023-10-01T09:01:46,935 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/external_bt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/external_bt.o -fopenmp 2023-10-01T09:01:47,205 In file included from src/ViennaRNA/loops/external_bt.c:34: 2023-10-01T09:01:47,205 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-10-01T09:01:47,206 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:47,206 865 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:47,207 | ^ 2023-10-01T09:01:47,208 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-10-01T09:01:47,209 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:47,209 898 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:47,210 | ^ 2023-10-01T09:01:47,211 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-10-01T09:01:47,211 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:47,212 969 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:47,212 | ^ 2023-10-01T09:01:47,213 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-10-01T09:01:47,213 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:47,214 993 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:47,214 | ^ 2023-10-01T09:01:47,215 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-10-01T09:01:47,216 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:47,216 1121 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:47,217 | ^ 2023-10-01T09:01:47,217 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-10-01T09:01:47,217 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:47,218 1145 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:47,218 | ^ 2023-10-01T09:01:47,219 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-10-01T09:01:47,220 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:47,221 1292 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:47,221 | ^ 2023-10-01T09:01:47,222 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-10-01T09:01:47,222 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:47,223 1320 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:47,224 | ^ 2023-10-01T09:01:47,224 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-10-01T09:01:47,225 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:47,226 1348 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:47,226 | ^ 2023-10-01T09:01:47,227 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-10-01T09:01:47,227 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:47,228 1404 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:47,229 | ^ 2023-10-01T09:01:47,229 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-10-01T09:01:47,230 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:47,230 1426 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:47,231 | ^ 2023-10-01T09:01:47,232 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-10-01T09:01:47,232 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:47,233 1450 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:47,234 | ^ 2023-10-01T09:01:47,234 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-10-01T09:01:47,234 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:47,235 1596 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:47,235 | ^ 2023-10-01T09:01:47,236 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-10-01T09:01:47,236 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:47,237 1628 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:47,237 | ^ 2023-10-01T09:01:47,238 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-10-01T09:01:47,238 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:47,239 1677 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:47,239 | ^ 2023-10-01T09:01:47,240 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-10-01T09:01:47,240 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:47,241 1698 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:47,242 | ^ 2023-10-01T09:01:49,743 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/external_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/external_pf.o -fopenmp 2023-10-01T09:01:50,005 In file included from src/ViennaRNA/loops/external_pf.c:32: 2023-10-01T09:01:50,005 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-10-01T09:01:50,006 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:50,007 224 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:50,007 | ^ 2023-10-01T09:01:50,008 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-10-01T09:01:50,009 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:50,009 265 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:50,010 | ^ 2023-10-01T09:01:50,010 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-10-01T09:01:50,011 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:50,012 320 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:50,012 | ^ 2023-10-01T09:01:50,013 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-10-01T09:01:50,014 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:50,015 385 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:01:50,015 | ^ 2023-10-01T09:01:50,016 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-10-01T09:01:50,016 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:50,017 414 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:50,017 | ^ 2023-10-01T09:01:50,018 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-10-01T09:01:50,018 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:50,019 463 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:50,019 | ^ 2023-10-01T09:01:50,020 src/ViennaRNA/loops/external_pf.c: In function ‘vrna_exp_E_ext_fast_init’: 2023-10-01T09:01:50,020 src/ViennaRNA/loops/external_pf.c:160:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:50,021 160 | for (u = 0; u < domains_up->uniq_motif_count; u++) 2023-10-01T09:01:50,022 | ^ 2023-10-01T09:01:50,022 src/ViennaRNA/loops/external_pf.c:161:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:50,023 161 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-10-01T09:01:50,023 | ^ 2023-10-01T09:01:50,024 src/ViennaRNA/loops/external_pf.c:167:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:50,025 167 | for (u = 0; u <= ud_max_size; u++) 2023-10-01T09:01:50,025 | ^~ 2023-10-01T09:01:50,026 src/ViennaRNA/loops/external_pf.c: In function ‘vrna_exp_E_ext_fast’: 2023-10-01T09:01:50,027 src/ViennaRNA/loops/external_pf.c:270:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:50,028 270 | } else if (j > fc->length) { 2023-10-01T09:01:50,028 | ^ 2023-10-01T09:01:50,029 src/ViennaRNA/loops/external_pf.c: In function ‘reduce_ext_stem_fast’: 2023-10-01T09:01:50,030 src/ViennaRNA/loops/external_pf.c:412:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:50,030 412 | s3 = (((j < n) || circular) && (sn[j + 1] == sn[j])) ? S1[j + 1] : -1; 2023-10-01T09:01:50,032 | ^ 2023-10-01T09:01:51,469 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/hairpin.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/hairpin.o -fopenmp 2023-10-01T09:01:52,961 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/hairpin_bt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/hairpin_bt.o -fopenmp 2023-10-01T09:01:53,300 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/hairpin_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/hairpin_pf.o -fopenmp 2023-10-01T09:01:54,813 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/internal.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/internal.o -fopenmp 2023-10-01T09:01:55,081 In file included from src/ViennaRNA/loops/internal.c:29: 2023-10-01T09:01:55,082 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-10-01T09:01:55,082 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:55,083 71 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:55,084 | ^ 2023-10-01T09:01:55,084 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-10-01T09:01:55,085 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:55,086 110 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:55,086 | ^ 2023-10-01T09:01:55,087 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-10-01T09:01:55,088 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:55,089 141 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:55,089 | ^ 2023-10-01T09:01:55,090 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-10-01T09:01:55,091 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:55,091 183 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:55,092 | ^ 2023-10-01T09:01:55,093 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-10-01T09:01:55,093 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:55,094 222 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:55,095 | ^ 2023-10-01T09:01:55,095 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-10-01T09:01:55,096 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:55,097 726 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:55,097 | ^ 2023-10-01T09:01:55,098 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-10-01T09:01:55,099 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:01:55,099 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-10-01T09:01:55,100 | ^~ 2023-10-01T09:01:55,101 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-10-01T09:01:55,101 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:55,102 780 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:55,103 | ^ 2023-10-01T09:01:55,103 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-10-01T09:01:55,104 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:01:55,105 821 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:01:55,105 | ^ 2023-10-01T09:01:58,328 In function ‘E_internal_loop’, 2023-10-01T09:01:58,328 inlined from ‘vrna_E_int_loop’ at src/ViennaRNA/loops/internal.c:86:9: 2023-10-01T09:01:58,329 src/ViennaRNA/loops/internal.c:790:15: warning: ‘eee’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:01:58,329 790 | e = MIN2(e, eee); 2023-10-01T09:01:58,330 src/ViennaRNA/loops/internal.c: In function ‘vrna_E_int_loop’: 2023-10-01T09:01:58,331 src/ViennaRNA/loops/internal.c:372:28: note: ‘eee’ was declared here 2023-10-01T09:01:58,331 372 | int e, eee, *idx, ij, *c, *ggg, *rtype, with_ud, with_gquad, noclose, 2023-10-01T09:01:58,332 | ^~~ 2023-10-01T09:01:59,933 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/internal_bt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/internal_bt.o -fopenmp 2023-10-01T09:02:00,201 In file included from src/ViennaRNA/loops/internal_bt.c:29: 2023-10-01T09:02:00,202 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-10-01T09:02:00,202 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:00,203 71 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:00,204 | ^ 2023-10-01T09:02:00,204 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-10-01T09:02:00,205 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:00,206 110 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:00,206 | ^ 2023-10-01T09:02:00,207 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-10-01T09:02:00,208 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:00,208 141 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:00,209 | ^ 2023-10-01T09:02:00,210 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-10-01T09:02:00,210 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:00,211 183 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:00,212 | ^ 2023-10-01T09:02:00,212 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-10-01T09:02:00,213 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:00,214 222 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:00,215 | ^ 2023-10-01T09:02:00,215 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-10-01T09:02:00,216 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:00,216 726 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:00,217 | ^ 2023-10-01T09:02:00,217 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-10-01T09:02:00,218 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:00,218 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-10-01T09:02:00,219 | ^~ 2023-10-01T09:02:00,219 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-10-01T09:02:00,220 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:00,220 780 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:00,221 | ^ 2023-10-01T09:02:00,221 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-10-01T09:02:00,222 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:00,223 821 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:00,223 | ^ 2023-10-01T09:02:03,988 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/internal_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/internal_pf.o -fopenmp 2023-10-01T09:02:04,257 In file included from src/ViennaRNA/loops/internal_pf.c:29: 2023-10-01T09:02:04,258 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-10-01T09:02:04,259 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:04,259 73 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:04,260 | ^ 2023-10-01T09:02:04,261 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-10-01T09:02:04,261 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:04,262 112 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:04,262 | ^ 2023-10-01T09:02:04,263 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-10-01T09:02:04,264 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:04,264 143 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:04,265 | ^ 2023-10-01T09:02:04,266 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-10-01T09:02:04,267 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:04,267 185 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:04,268 | ^ 2023-10-01T09:02:04,268 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-10-01T09:02:04,269 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:04,269 224 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:04,270 | ^ 2023-10-01T09:02:04,270 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-10-01T09:02:04,271 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:04,271 730 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:04,272 | ^ 2023-10-01T09:02:04,272 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-10-01T09:02:04,273 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:04,273 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-10-01T09:02:04,274 | ^~ 2023-10-01T09:02:04,274 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-10-01T09:02:04,275 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:04,275 784 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:04,276 | ^ 2023-10-01T09:02:04,277 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-10-01T09:02:04,278 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:04,278 825 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:04,279 | ^ 2023-10-01T09:02:04,290 src/ViennaRNA/loops/internal_pf.c: In function ‘exp_E_int_loop’: 2023-10-01T09:02:04,290 src/ViennaRNA/loops/internal_pf.c:250:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:04,291 250 | if (last_k > se[sn[i]]) 2023-10-01T09:02:04,292 | ^ 2023-10-01T09:02:04,293 src/ViennaRNA/loops/internal_pf.c:331:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:04,294 331 | if (first_l < ss[sn[j]]) 2023-10-01T09:02:04,295 | ^ 2023-10-01T09:02:04,297 src/ViennaRNA/loops/internal_pf.c:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:04,297 415 | if (last_k > se[sn[i]]) 2023-10-01T09:02:04,298 | ^ 2023-10-01T09:02:04,299 src/ViennaRNA/loops/internal_pf.c:426:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:04,299 426 | if (first_l < ss[sn[j]]) 2023-10-01T09:02:04,300 | ^ 2023-10-01T09:02:08,606 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/multibranch.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/multibranch.o -fopenmp 2023-10-01T09:02:08,868 In file included from src/ViennaRNA/loops/multibranch.c:36: 2023-10-01T09:02:08,868 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-10-01T09:02:08,869 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:08,870 76 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:08,870 | ^ 2023-10-01T09:02:08,871 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-10-01T09:02:08,871 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:08,872 95 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:08,872 | ^ 2023-10-01T09:02:08,873 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-10-01T09:02:08,873 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:08,874 124 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:08,874 | ^ 2023-10-01T09:02:08,875 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-10-01T09:02:08,875 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:08,876 155 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:08,877 | ^ 2023-10-01T09:02:08,878 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-10-01T09:02:08,878 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:08,879 328 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:08,880 | ^ 2023-10-01T09:02:08,881 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-10-01T09:02:08,881 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:08,882 397 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:08,883 | ^ 2023-10-01T09:02:08,883 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-10-01T09:02:08,884 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:08,885 530 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:08,885 | ^ 2023-10-01T09:02:08,886 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-10-01T09:02:08,886 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:08,887 663 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:08,888 | ^ 2023-10-01T09:02:08,889 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-10-01T09:02:08,889 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:08,890 802 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:08,891 | ^ 2023-10-01T09:02:08,891 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-10-01T09:02:08,892 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:08,892 849 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:02:08,893 | ^ 2023-10-01T09:02:08,893 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-10-01T09:02:08,894 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:08,894 888 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:08,895 | ^ 2023-10-01T09:02:08,895 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-10-01T09:02:08,896 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:08,896 947 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:08,897 | ^ 2023-10-01T09:02:08,897 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-10-01T09:02:08,898 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:08,898 983 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:08,899 | ^ 2023-10-01T09:02:08,900 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-10-01T09:02:08,900 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:08,901 1020 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:08,901 | ^ 2023-10-01T09:02:08,902 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-10-01T09:02:08,903 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:08,904 1079 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:08,904 | ^ 2023-10-01T09:02:13,635 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/multibranch_bt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/multibranch_bt.o -fopenmp 2023-10-01T09:02:13,896 In file included from src/ViennaRNA/loops/multibranch_bt.c:30: 2023-10-01T09:02:13,897 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-10-01T09:02:13,898 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:13,898 76 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:13,899 | ^ 2023-10-01T09:02:13,900 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-10-01T09:02:13,901 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:13,901 95 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:13,902 | ^ 2023-10-01T09:02:13,903 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-10-01T09:02:13,903 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:13,904 124 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:13,904 | ^ 2023-10-01T09:02:13,905 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-10-01T09:02:13,905 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:13,906 155 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:13,906 | ^ 2023-10-01T09:02:13,907 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-10-01T09:02:13,907 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:13,908 328 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:13,908 | ^ 2023-10-01T09:02:13,909 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-10-01T09:02:13,909 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:13,910 397 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:13,910 | ^ 2023-10-01T09:02:13,911 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-10-01T09:02:13,912 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:13,912 530 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:13,913 | ^ 2023-10-01T09:02:13,914 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-10-01T09:02:13,914 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:13,915 663 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:13,916 | ^ 2023-10-01T09:02:13,916 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-10-01T09:02:13,917 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:13,918 802 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:13,918 | ^ 2023-10-01T09:02:13,919 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-10-01T09:02:13,920 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:13,920 849 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:02:13,921 | ^ 2023-10-01T09:02:13,921 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-10-01T09:02:13,922 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:13,923 888 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:13,923 | ^ 2023-10-01T09:02:13,924 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-10-01T09:02:13,925 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:13,926 947 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:13,926 | ^ 2023-10-01T09:02:13,926 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-10-01T09:02:13,927 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:13,927 983 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:13,928 | ^ 2023-10-01T09:02:13,928 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-10-01T09:02:13,929 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:13,929 1020 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:13,930 | ^ 2023-10-01T09:02:13,930 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-10-01T09:02:13,930 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:13,931 1079 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:13,931 | ^ 2023-10-01T09:02:18,364 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/multibranch_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/multibranch_pf.o -fopenmp 2023-10-01T09:02:18,633 src/ViennaRNA/loops/multibranch_pf.c: In function ‘vrna_exp_E_ml_fast_init’: 2023-10-01T09:02:18,633 src/ViennaRNA/loops/multibranch_pf.c:125:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:18,634 125 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-10-01T09:02:18,635 | ^ 2023-10-01T09:02:18,638 In file included from src/ViennaRNA/loops/multibranch_pf.c:11: 2023-10-01T09:02:18,639 src/ViennaRNA/loops/multibranch_pf.c: In function ‘exp_E_mb_loop_fast’: 2023-10-01T09:02:18,639 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:18,640 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:02:18,641 | ^ 2023-10-01T09:02:18,641 src/ViennaRNA/loops/multibranch_pf.c:351:20: note: in expansion of macro ‘MIN2’ 2023-10-01T09:02:18,642 351 | int stop = MIN2(j - 1, se[sn[k - 1]]); 2023-10-01T09:02:18,642 | ^~~~ 2023-10-01T09:02:18,643 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T09:02:18,644 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:02:18,644 | ^~~ 2023-10-01T09:02:18,645 src/ViennaRNA/loops/multibranch_pf.c:351:20: note: in expansion of macro ‘MIN2’ 2023-10-01T09:02:18,645 351 | int stop = MIN2(j - 1, se[sn[k - 1]]); 2023-10-01T09:02:18,646 | ^~~~ 2023-10-01T09:02:18,647 src/ViennaRNA/loops/multibranch_pf.c: In function ‘exp_E_ml_fast’: 2023-10-01T09:02:18,647 src/ViennaRNA/utils/basic.h:111:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:18,648 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-10-01T09:02:18,649 | ^ 2023-10-01T09:02:18,649 src/ViennaRNA/loops/multibranch_pf.c:566:18: note: in expansion of macro ‘MAX2’ 2023-10-01T09:02:18,650 566 | int stop = MAX2(i, ss[sn[k]]); 2023-10-01T09:02:18,651 | ^~~~ 2023-10-01T09:02:18,652 src/ViennaRNA/utils/basic.h:111:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T09:02:18,653 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-10-01T09:02:18,653 | ^~~ 2023-10-01T09:02:18,654 src/ViennaRNA/loops/multibranch_pf.c:566:18: note: in expansion of macro ‘MAX2’ 2023-10-01T09:02:18,654 566 | int stop = MAX2(i, ss[sn[k]]); 2023-10-01T09:02:18,654 | ^~~~ 2023-10-01T09:02:18,655 src/ViennaRNA/loops/multibranch_pf.c:587:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:18,656 587 | if (maxk > se[sn[i]]) 2023-10-01T09:02:18,656 | ^ 2023-10-01T09:02:20,562 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mfe.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe.o -fopenmp 2023-10-01T09:02:20,847 In file included from src/ViennaRNA/mfe.c:58: 2023-10-01T09:02:20,847 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-10-01T09:02:20,848 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,849 865 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:02:20,850 | ^ 2023-10-01T09:02:20,850 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-10-01T09:02:20,851 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,852 898 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:02:20,853 | ^ 2023-10-01T09:02:20,853 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-10-01T09:02:20,854 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,854 969 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:20,855 | ^ 2023-10-01T09:02:20,856 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-10-01T09:02:20,856 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,857 993 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:20,857 | ^ 2023-10-01T09:02:20,858 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-10-01T09:02:20,859 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,859 1121 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:20,860 | ^ 2023-10-01T09:02:20,861 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-10-01T09:02:20,861 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,862 1145 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:20,862 | ^ 2023-10-01T09:02:20,863 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-10-01T09:02:20,863 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,864 1292 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:02:20,864 | ^ 2023-10-01T09:02:20,865 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-10-01T09:02:20,865 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,866 1320 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:02:20,866 | ^ 2023-10-01T09:02:20,866 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-10-01T09:02:20,867 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,868 1348 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:02:20,868 | ^ 2023-10-01T09:02:20,869 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-10-01T09:02:20,869 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,870 1404 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:20,870 | ^ 2023-10-01T09:02:20,871 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-10-01T09:02:20,872 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,872 1426 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:20,873 | ^ 2023-10-01T09:02:20,873 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-10-01T09:02:20,874 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,874 1450 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:20,875 | ^ 2023-10-01T09:02:20,876 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-10-01T09:02:20,876 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,877 1596 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:02:20,877 | ^ 2023-10-01T09:02:20,878 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-10-01T09:02:20,878 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,879 1628 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:02:20,880 | ^ 2023-10-01T09:02:20,880 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-10-01T09:02:20,881 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,882 1677 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:20,882 | ^ 2023-10-01T09:02:20,883 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-10-01T09:02:20,883 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,884 1698 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:02:20,884 | ^ 2023-10-01T09:02:20,887 src/ViennaRNA/mfe.c: In function ‘fill_arrays’: 2023-10-01T09:02:20,887 src/ViennaRNA/mfe.c:389:52: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T09:02:20,888 389 | if (length <= ((fc->strands > 1) ? fc->strands : md->min_loop_size)) { 2023-10-01T09:02:20,888 | ^~~~~~~~~~~~~~~~~ 2023-10-01T09:02:20,889 src/ViennaRNA/mfe.c:389:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:20,889 389 | if (length <= ((fc->strands > 1) ? fc->strands : md->min_loop_size)) { 2023-10-01T09:02:20,890 | ^~ 2023-10-01T09:02:20,890 src/ViennaRNA/mfe.c: In function ‘postprocess_circular’: 2023-10-01T09:02:20,891 src/ViennaRNA/mfe.c:510:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:20,891 510 | for (s = 0; s < fc->n_seq; s++) 2023-10-01T09:02:20,892 | ^ 2023-10-01T09:02:20,950 src/ViennaRNA/mfe.c: In function ‘pair_multi_strand’: 2023-10-01T09:02:20,951 src/ViennaRNA/mfe.c:2197:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,952 2197 | if (ends[sn[i]] > i) 2023-10-01T09:02:20,953 | ^ 2023-10-01T09:02:20,954 src/ViennaRNA/mfe.c:2200:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:20,955 2200 | if (j - 1 > ends[sn[i]]) 2023-10-01T09:02:20,955 | ^ 2023-10-01T09:02:20,957 src/ViennaRNA/mfe.c:2220:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:20,957 2220 | if (i + 1 <= ends[sn[nick]]) 2023-10-01T09:02:20,958 | ^~ 2023-10-01T09:02:20,959 src/ViennaRNA/mfe.c:2223:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,960 2223 | if (ends[sn[nick]] + 1 <= j - 1) 2023-10-01T09:02:20,960 | ^~ 2023-10-01T09:02:20,966 src/ViennaRNA/mfe.c:2292:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,966 2292 | if (nick > i + 2) 2023-10-01T09:02:20,967 | ^ 2023-10-01T09:02:20,968 src/ViennaRNA/mfe.c:2295:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:20,969 2295 | if (j > nick + 1) 2023-10-01T09:02:20,969 | ^ 2023-10-01T09:02:20,972 src/ViennaRNA/mfe.c:2325:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,972 2325 | if (nick > i + 2) 2023-10-01T09:02:20,973 | ^ 2023-10-01T09:02:20,974 src/ViennaRNA/mfe.c:2328:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:20,974 2328 | if (j > nick) 2023-10-01T09:02:20,975 | ^ 2023-10-01T09:02:20,978 src/ViennaRNA/mfe.c:2358:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,978 2358 | if (nick > i + 1) 2023-10-01T09:02:20,979 | ^ 2023-10-01T09:02:20,980 src/ViennaRNA/mfe.c:2361:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:20,981 2361 | if (j > nick + 1) 2023-10-01T09:02:20,981 | ^ 2023-10-01T09:02:20,983 src/ViennaRNA/mfe.c:2129:29: warning: variable ‘sc_red_ext’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:02:20,983 2129 | sc_ext_red_cb sc_red_ext; 2023-10-01T09:02:20,984 | ^~~~~~~~~~ 2023-10-01T09:02:20,985 src/ViennaRNA/mfe.c:2127:29: warning: variable ‘sc_spl’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:02:20,985 2127 | sc_ext_red_cb sc_spl; 2023-10-01T09:02:20,986 | ^~~~~~ 2023-10-01T09:02:20,988 src/ViennaRNA/mfe.c: In function ‘BT_multi_strand’: 2023-10-01T09:02:20,989 src/ViennaRNA/mfe.c:2477:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,990 2477 | if (ends[sn[*i]] > *i) 2023-10-01T09:02:20,990 | ^ 2023-10-01T09:02:20,992 src/ViennaRNA/mfe.c:2480:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:20,993 2480 | if (*j - 1 > ends[sn[*i]]) 2023-10-01T09:02:20,993 | ^ 2023-10-01T09:02:20,995 src/ViennaRNA/mfe.c:2486:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:20,996 2486 | *i = (ends[sn[*i]] > *i) ? *i + 1 : 0; 2023-10-01T09:02:20,996 | ^ 2023-10-01T09:02:20,997 src/ViennaRNA/mfe.c:2487:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:20,998 2487 | *j = (*j - 1 > ends[sn[*i]]) ? *j - 1 : 0; 2023-10-01T09:02:20,998 | ^ 2023-10-01T09:02:20,999 src/ViennaRNA/mfe.c:2495:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:21,000 2495 | if (*i + 1 <= ends[sn[nick]]) 2023-10-01T09:02:21,000 | ^~ 2023-10-01T09:02:21,002 src/ViennaRNA/mfe.c:2498:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:21,003 2498 | if (ends[sn[nick]] + 1 <= *j - 1) 2023-10-01T09:02:21,003 | ^~ 2023-10-01T09:02:21,005 src/ViennaRNA/mfe.c:2504:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:21,005 2504 | *i = (*i + 1 <= ends[sn[nick]]) ? *i + 1 : 0; 2023-10-01T09:02:21,006 | ^~ 2023-10-01T09:02:21,007 src/ViennaRNA/mfe.c:2505:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:21,008 2505 | *j = (ends[sn[nick]] + 1 <= *j - 1) ? *j - 1 : 0; 2023-10-01T09:02:21,008 | ^~ 2023-10-01T09:02:21,014 src/ViennaRNA/mfe.c:2590:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:21,014 2590 | if (nick > *i + 2) 2023-10-01T09:02:21,015 | ^ 2023-10-01T09:02:21,017 src/ViennaRNA/mfe.c:2593:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:21,017 2593 | if (*j > nick + 1) 2023-10-01T09:02:21,017 | ^ 2023-10-01T09:02:21,020 src/ViennaRNA/mfe.c:2599:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:21,020 2599 | *i = (nick > *i + 2) ? *i + 2 : 0; 2023-10-01T09:02:21,021 | ^ 2023-10-01T09:02:21,022 src/ViennaRNA/mfe.c:2600:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:21,023 2600 | *j = (*j > nick + 1) ? *j - 2 : 0; 2023-10-01T09:02:21,023 | ^ 2023-10-01T09:02:21,026 src/ViennaRNA/mfe.c:2623:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:21,026 2623 | if (nick > *i + 2) 2023-10-01T09:02:21,027 | ^ 2023-10-01T09:02:21,029 src/ViennaRNA/mfe.c:2626:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:21,029 2626 | if (*j > nick) 2023-10-01T09:02:21,030 | ^ 2023-10-01T09:02:21,032 src/ViennaRNA/mfe.c:2632:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:21,032 2632 | *i = (nick > *i + 2) ? *i + 2 : 0; 2023-10-01T09:02:21,033 | ^ 2023-10-01T09:02:21,034 src/ViennaRNA/mfe.c:2633:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:21,035 2633 | *j = (*j > nick) ? *j - 1 : 0; 2023-10-01T09:02:21,036 | ^ 2023-10-01T09:02:21,038 src/ViennaRNA/mfe.c:2656:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:21,039 2656 | if (nick > *i + 1) 2023-10-01T09:02:21,039 | ^ 2023-10-01T09:02:21,041 src/ViennaRNA/mfe.c:2659:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:21,042 2659 | if (*j > nick + 1) 2023-10-01T09:02:21,042 | ^ 2023-10-01T09:02:21,045 src/ViennaRNA/mfe.c:2665:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:21,045 2665 | *i = (nick > *i + 1) ? *i + 1 : 0; 2023-10-01T09:02:21,046 | ^ 2023-10-01T09:02:21,047 src/ViennaRNA/mfe.c:2666:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:21,048 2666 | *j = (*j > nick + 1) ? *j - 2 : 0; 2023-10-01T09:02:21,048 | ^ 2023-10-01T09:02:21,050 src/ViennaRNA/mfe.c:2403:29: warning: variable ‘sc_red_ext’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:02:21,050 2403 | sc_ext_red_cb sc_red_ext; 2023-10-01T09:02:21,051 | ^~~~~~~~~~ 2023-10-01T09:02:21,052 src/ViennaRNA/mfe.c:2401:29: warning: variable ‘sc_spl’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:02:21,053 2401 | sc_ext_red_cb sc_spl; 2023-10-01T09:02:21,053 | ^~~~~~ 2023-10-01T09:02:21,078 src/ViennaRNA/mfe.c: In function ‘backtrack’: 2023-10-01T09:02:21,081 src/ViennaRNA/mfe.c:3264:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:21,081 3264 | if (k < fc->strand_end[strand]) { 2023-10-01T09:02:21,082 | ^ 2023-10-01T09:02:21,085 src/ViennaRNA/mfe.c:3299:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:21,085 3299 | if (k > fc->strand_start[strand]) { 2023-10-01T09:02:21,086 | ^ 2023-10-01T09:02:29,239 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mfe_window.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe_window.o -fopenmp 2023-10-01T09:02:29,530 src/ViennaRNA/mfe_window.c: In function ‘backtrack’: 2023-10-01T09:02:29,530 src/ViennaRNA/mfe_window.c:930:68: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:29,531 930 | if ((bp_stack[b].i == bp_stack[b].j) && (bp_stack[b].i < length)) 2023-10-01T09:02:29,531 | ^ 2023-10-01T09:02:29,533 src/ViennaRNA/mfe_window.c:1051:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:29,534 1051 | if (max3 < bp_stack[i].j - start) 2023-10-01T09:02:29,535 | ^ 2023-10-01T09:02:29,539 src/ViennaRNA/mfe_window.c: In function ‘update_block’: 2023-10-01T09:02:29,540 src/ViennaRNA/mfe_window.c:1312:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:02:29,541 1312 | for (size_t pos = i_local + 1; pos <= end; pos++) 2023-10-01T09:02:29,542 | ^~ 2023-10-01T09:02:29,542 src/ViennaRNA/mfe_window.c:1313:22: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:02:29,543 1313 | if (b->pt[pos] > pos) { 2023-10-01T09:02:29,544 | ^ 2023-10-01T09:02:29,544 src/ViennaRNA/mfe_window.c:1348:24: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:02:29,545 1348 | if (b->pt[p] > p) { 2023-10-01T09:02:29,546 | ^ 2023-10-01T09:02:29,548 src/ViennaRNA/mfe_window.c: In function ‘insert_block’: 2023-10-01T09:02:29,549 src/ViennaRNA/mfe_window.c:1592:21: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-01T09:02:29,550 1592 | if (pt[i_local] > i_local) { 2023-10-01T09:02:29,551 | ^ 2023-10-01T09:02:29,551 src/ViennaRNA/mfe_window.c: In function ‘print_block_list’: 2023-10-01T09:02:29,552 src/ViennaRNA/mfe_window.c:1611:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-10-01T09:02:29,553 1611 | printf("block %lu: en=%d, start: %lu, end: %lu, shift: %lu\n", 2023-10-01T09:02:29,554 | ~~^ 2023-10-01T09:02:29,554 | | 2023-10-01T09:02:29,555 | long unsigned int 2023-10-01T09:02:29,555 | %u 2023-10-01T09:02:29,556 1612 | cnt, 2023-10-01T09:02:29,556 | ~~~ 2023-10-01T09:02:29,557 | | 2023-10-01T09:02:29,557 | size_t {aka unsigned int} 2023-10-01T09:02:29,558 src/ViennaRNA/mfe_window.c:1617:13: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-10-01T09:02:29,558 1617 | printf("%lu blocks remaining\n", cnt); 2023-10-01T09:02:29,559 | ~~^ ~~~ 2023-10-01T09:02:29,559 | | | 2023-10-01T09:02:29,560 | long unsigned int size_t {aka unsigned int} 2023-10-01T09:02:29,560 | %u 2023-10-01T09:02:29,590 src/ViennaRNA/mfe_window.c: At top level: 2023-10-01T09:02:29,591 src/ViennaRNA/mfe_window.c:1605:1: warning: ‘print_block_list’ defined but not used [-Wunused-function] 2023-10-01T09:02:29,591 1605 | print_block_list(struct block *block_list) 2023-10-01T09:02:29,592 | ^~~~~~~~~~~~~~~~ 2023-10-01T09:02:31,526 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mfe_window_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe_window_wrappers.o -fopenmp 2023-10-01T09:02:31,764 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mfe_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe_wrappers.o -fopenmp 2023-10-01T09:02:32,012 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mm.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mm.o -fopenmp 2023-10-01T09:02:32,263 src/ViennaRNA/mm.c: In function ‘maximumMatchingConstraint’: 2023-10-01T09:02:32,264 src/ViennaRNA/mm.c:154:25: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:32,265 154 | if (ptable[l] != j) 2023-10-01T09:02:32,265 | ^~ 2023-10-01T09:02:32,266 src/ViennaRNA/mm.c: In function ‘maximumMatching2Constraint’: 2023-10-01T09:02:32,267 src/ViennaRNA/mm.c:187:25: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:32,268 187 | if (ptable[l] != j && ptable2[l] != j) 2023-10-01T09:02:32,269 | ^~ 2023-10-01T09:02:32,270 src/ViennaRNA/mm.c:187:44: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:32,271 187 | if (ptable[l] != j && ptable2[l] != j) 2023-10-01T09:02:32,272 | ^~ 2023-10-01T09:02:32,936 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/model.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/model.o -fopenmp 2023-10-01T09:02:33,934 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/move_set.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/move_set.o -fopenmp 2023-10-01T09:02:36,071 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/convert.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/convert.o -fopenmp 2023-10-01T09:02:36,830 In file included from src/ViennaRNA/params/convert.c:27: 2023-10-01T09:02:36,830 src/ViennaRNA/params/1.8.4_epars.h:100:13: warning: ‘oldinternal_loop37_184’ defined but not used [-Wunused-variable] 2023-10-01T09:02:36,831 100 | PRIVATE int oldinternal_loop37_184[31] = { 2023-10-01T09:02:36,831 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:02:36,832 src/ViennaRNA/params/1.8.4_epars.h:90:13: warning: ‘oldbulge37_184’ defined but not used [-Wunused-variable] 2023-10-01T09:02:36,833 90 | PRIVATE int oldbulge37_184[31] = { 2023-10-01T09:02:36,834 | ^~~~~~~~~~~~~~ 2023-10-01T09:02:36,835 src/ViennaRNA/params/1.8.4_epars.h:80:13: warning: ‘oldhairpin37_184’ defined but not used [-Wunused-variable] 2023-10-01T09:02:36,835 80 | PRIVATE int oldhairpin37_184[31] = { /* from ViennaRNA 1.3 */ 2023-10-01T09:02:36,836 | ^~~~~~~~~~~~~~~~ 2023-10-01T09:02:36,837 src/ViennaRNA/params/1.8.4_epars.h:50:16: warning: ‘Tmeasure_184’ defined but not used [-Wunused-variable] 2023-10-01T09:02:36,837 50 | PRIVATE double Tmeasure_184 = 37 + K0; /* temperature of param measurements */ 2023-10-01T09:02:36,838 | ^~~~~~~~~~~~ 2023-10-01T09:02:37,799 In function ‘write_new_parameter_file’, 2023-10-01T09:02:37,800 inlined from ‘convert_parameter_file’ at src/ViennaRNA/params/convert.c:172:3: 2023-10-01T09:02:37,800 src/ViennaRNA/params/convert.c:1166:9: warning: ‘strncpy’ specified bound 6 equals destination size [-Wstringop-truncation] 2023-10-01T09:02:37,801 1166 | strncpy(bla, Tetraloops_184 + c * 7, 6); 2023-10-01T09:02:37,801 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:02:37,802 src/ViennaRNA/params/convert.c:1145:9: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 240 [-Wstringop-truncation] 2023-10-01T09:02:37,803 1145 | strncpy(bla, Triloops_184 + c * 6, 5); 2023-10-01T09:02:37,803 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:02:39,200 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/default.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/default.o -fopenmp 2023-10-01T09:02:40,114 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/io.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/io.o -fopenmp 2023-10-01T09:02:50,126 src/ViennaRNA/params/io.c: In function ‘save_parameter_file’: 2023-10-01T09:02:50,127 src/ViennaRNA/params/io.c:1613:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:02:50,127 1613 | for (c = 0; c < strlen(Hexaloops) / 9; c++) 2023-10-01T09:02:50,128 | ^ 2023-10-01T09:02:50,129 src/ViennaRNA/params/io.c:1617:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:02:50,129 1617 | for (c = 0; c < strlen(Tetraloops) / 7; c++) 2023-10-01T09:02:50,130 | ^ 2023-10-01T09:02:50,130 src/ViennaRNA/params/io.c:1621:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:02:50,131 1621 | for (c = 0; c < strlen(Triloops) / 6; c++) 2023-10-01T09:02:50,131 | ^ 2023-10-01T09:02:50,143 src/ViennaRNA/params/io.c: In function ‘write_parameter_file’: 2023-10-01T09:02:50,145 src/ViennaRNA/params/io.c:2096:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:02:50,146 2096 | for (c = 0; c < strlen(Hexaloops) / 9; c++) 2023-10-01T09:02:50,146 | ^ 2023-10-01T09:02:50,147 src/ViennaRNA/params/io.c:2100:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:02:50,148 2100 | for (c = 0; c < strlen(Tetraloops) / 7; c++) 2023-10-01T09:02:50,148 | ^ 2023-10-01T09:02:50,149 src/ViennaRNA/params/io.c:2104:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:02:50,150 2104 | for (c = 0; c < strlen(Triloops) / 6; c++) 2023-10-01T09:02:50,151 | ^ 2023-10-01T09:02:50,176 src/ViennaRNA/params/io.c: At top level: 2023-10-01T09:02:50,176 src/ViennaRNA/params/io.c:1003:1: warning: ‘rd_6dim’ defined but not used [-Wunused-function] 2023-10-01T09:02:50,177 1003 | rd_6dim(char **content, 2023-10-01T09:02:50,178 | ^~~~~~~ 2023-10-01T09:02:53,425 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/params.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/params.o -fopenmp 2023-10-01T09:02:53,688 src/ViennaRNA/params/params.c: In function ‘rescale_params’: 2023-10-01T09:02:53,689 src/ViennaRNA/params/params.c:1088:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:53,689 1088 | for (i = 2; i <= vc->length; i++) { 2023-10-01T09:02:53,690 | ^~ 2023-10-01T09:02:56,693 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/salt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/salt.o -fopenmp 2023-10-01T09:02:56,892 src/ViennaRNA/params/salt.c: In function ‘vrna_salt_duplex_init’: 2023-10-01T09:02:56,893 src/ViennaRNA/params/salt.c:193:19: warning: unused variable ‘penalty’ [-Wunused-variable] 2023-10-01T09:02:56,894 193 | double a, x, penalty; 2023-10-01T09:02:56,895 | ^~~~~~~ 2023-10-01T09:02:56,895 src/ViennaRNA/params/salt.c:193:13: warning: unused variable ‘a’ [-Wunused-variable] 2023-10-01T09:02:56,896 193 | double a, x, penalty; 2023-10-01T09:02:56,896 | ^ 2023-10-01T09:02:57,087 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/part_func.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/part_func.o -fopenmp 2023-10-01T09:02:57,376 src/ViennaRNA/part_func.c: In function ‘postprocess_circular’: 2023-10-01T09:02:57,376 src/ViennaRNA/part_func.c:770:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:57,377 770 | for (s = 0; s < fc->n_seq; s++) 2023-10-01T09:02:57,378 | ^ 2023-10-01T09:02:58,599 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/part_func_co.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/part_func_co.o -fopenmp 2023-10-01T09:02:59,138 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/part_func_up.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/part_func_up.o -fopenmp 2023-10-01T09:02:59,394 src/ViennaRNA/part_func_up.c: In function ‘free_pu_contrib_struct’: 2023-10-01T09:02:59,395 src/ViennaRNA/part_func_up.c:232:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:02:59,396 232 | for (i = 0; i <= pu->length; i++) { 2023-10-01T09:02:59,397 | ^~ 2023-10-01T09:02:59,397 src/ViennaRNA/part_func_up.c: In function ‘pf_unstru’: 2023-10-01T09:02:59,398 src/ViennaRNA/part_func_up.c:280:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:02:59,398 280 | for (i = 0; i < size; i++) 2023-10-01T09:02:59,399 | ^ 2023-10-01T09:03:02,436 src/ViennaRNA/part_func_up.c: In function ‘pf_interact’: 2023-10-01T09:03:02,437 src/ViennaRNA/part_func_up.c:921:69: warning: ‘p_c2_S’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:03:02,438 921 | tt = qint_4[i][j][a][b] * p_c_S[add_i5][add_i3] * p_c2_S[j][b] * scalew * rev_d; 2023-10-01T09:03:02,439 | ^ 2023-10-01T09:03:02,439 src/ViennaRNA/part_func_up.c:604:49: note: ‘p_c2_S’ was declared here 2023-10-01T09:03:02,440 604 | double temp, Z, rev_d, E, Z2, **p_c_S, **p_c2_S, int_scale; 2023-10-01T09:03:02,440 | ^~~~~~ 2023-10-01T09:03:03,509 src/ViennaRNA/part_func_up.c: In function ‘Up_plot’: 2023-10-01T09:03:03,510 src/ViennaRNA/part_func_up.c:1625:10: warning: ‘ret’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:03:03,511 1625 | return ret; 2023-10-01T09:03:03,511 | ^~~ 2023-10-01T09:03:03,512 src/ViennaRNA/part_func_up.c:1597:11: note: ‘ret’ was declared here 2023-10-01T09:03:03,513 1597 | int ret; 2023-10-01T09:03:03,513 | ^~~ 2023-10-01T09:03:03,663 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/part_func_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/part_func_wrappers.o -fopenmp 2023-10-01T09:03:03,954 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/perturbation_fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/perturbation_fold.o -fopenmp 2023-10-01T09:03:04,682 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/pf_fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/pf_fold.o -fopenmp 2023-10-01T09:03:05,482 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/pf_multifold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/pf_multifold.o -fopenmp 2023-10-01T09:03:05,610 src/ViennaRNA/pf_multifold.c: In function ‘mf_rule_pair’: 2023-10-01T09:03:05,611 src/ViennaRNA/pf_multifold.c:121:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:05,612 121 | if (i + 1 <= ends[sn[nick]]) 2023-10-01T09:03:05,613 | ^~ 2023-10-01T09:03:05,613 src/ViennaRNA/pf_multifold.c:124:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:05,614 124 | if (ends[sn[nick]] + 1 <= j - 1) 2023-10-01T09:03:05,615 | ^~ 2023-10-01T09:03:05,917 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plex.o -fopenmp 2023-10-01T09:03:06,159 src/ViennaRNA/plex.c: In function ‘duplexfold_XS’: 2023-10-01T09:03:06,160 src/ViennaRNA/plex.c:431:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:06,160 431 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2023-10-01T09:03:06,161 | ^~~~~~~ 2023-10-01T09:03:06,178 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-10-01T09:03:06,179 src/ViennaRNA/plex.c:759:11: warning: unused variable ‘jdiff’ [-Wunused-variable] 2023-10-01T09:03:06,180 759 | int jdiff = j_pos + j - 11; 2023-10-01T09:03:06,180 | ^~~~~ 2023-10-01T09:03:06,182 src/ViennaRNA/plex.c:1010:7: warning: variable ‘endy’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:06,183 1010 | int endy; 2023-10-01T09:03:06,183 | ^~~~ 2023-10-01T09:03:06,184 src/ViennaRNA/plex.c:1008:7: warning: variable ‘endx’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:06,184 1008 | int endx; 2023-10-01T09:03:06,185 | ^~~~ 2023-10-01T09:03:06,185 src/ViennaRNA/plex.c:624:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:06,186 624 | int maxPenalty[4]; 2023-10-01T09:03:06,187 | ^~~~~~~~~~ 2023-10-01T09:03:06,208 src/ViennaRNA/plex.c: In function ‘fbacktrack_XS’: 2023-10-01T09:03:06,209 src/ViennaRNA/plex.c:1107:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:06,210 1107 | int maxPenalty[4]; 2023-10-01T09:03:06,210 | ^~~~~~~~~~ 2023-10-01T09:03:06,228 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2023-10-01T09:03:06,229 src/ViennaRNA/plex.c:1938:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:06,230 1938 | int maxPenalty[4]; 2023-10-01T09:03:06,231 | ^~~~~~~~~~ 2023-10-01T09:03:06,247 src/ViennaRNA/plex.c: In function ‘duplexfold’: 2023-10-01T09:03:06,249 src/ViennaRNA/plex.c:2663:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:06,249 2663 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-10-01T09:03:06,250 | ^~ 2023-10-01T09:03:06,272 src/ViennaRNA/plex.c: In function ‘fduplexfold’: 2023-10-01T09:03:06,274 src/ViennaRNA/plex.c:2851:39: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:06,275 2851 | int i, j, Emin, i_min, j_min, l1; 2023-10-01T09:03:06,275 | ^~ 2023-10-01T09:03:08,038 src/ViennaRNA/plex.c:3177:16: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:03:08,039 3177 | j0 = MAX2(j - 1, 11); 2023-10-01T09:03:08,039 | ^ 2023-10-01T09:03:08,041 src/ViennaRNA/plex.c:2862:13: note: ‘max_pos_j’ was declared here 2023-10-01T09:03:08,041 2862 | int max_pos_j; 2023-10-01T09:03:08,042 | ^~~~~~~~~ 2023-10-01T09:03:08,042 In function ‘fbacktrack’, 2023-10-01T09:03:08,043 inlined from ‘fduplexfold’ at src/ViennaRNA/plex.c:3115:11: 2023-10-01T09:03:08,044 src/ViennaRNA/plex.c:3189:20: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:03:08,044 3189 | type = pair[S1[i]][S2[j]]; 2023-10-01T09:03:08,045 | ^ 2023-10-01T09:03:08,046 src/ViennaRNA/plex.c: In function ‘fduplexfold’: 2023-10-01T09:03:08,046 src/ViennaRNA/plex.c:2861:13: note: ‘max_pos’ was declared here 2023-10-01T09:03:08,047 2861 | int max_pos; /* get position of the best hit */ 2023-10-01T09:03:08,048 | ^~~~~~~ 2023-10-01T09:03:10,960 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-10-01T09:03:10,962 src/ViennaRNA/plex.c:1023:6: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:03:10,962 1023 | if (j_min > 11) 2023-10-01T09:03:10,962 | ^ 2023-10-01T09:03:10,963 src/ViennaRNA/plex.c:619:13: note: ‘max_pos_j’ was declared here 2023-10-01T09:03:10,963 619 | int max_pos_j; 2023-10-01T09:03:10,964 | ^~~~~~~~~ 2023-10-01T09:03:10,964 In function ‘fbacktrack_XS’, 2023-10-01T09:03:10,965 inlined from ‘fduplexfold_XS’ at src/ViennaRNA/plex.c:988:11: 2023-10-01T09:03:10,966 src/ViennaRNA/plex.c:1126:20: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:03:10,966 1126 | type = pair[S1[i]][S2[j]]; 2023-10-01T09:03:10,967 | ^ 2023-10-01T09:03:10,967 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-10-01T09:03:10,967 src/ViennaRNA/plex.c:618:13: note: ‘max_pos’ was declared here 2023-10-01T09:03:10,968 618 | int max_pos; /* get position of the best hit */ 2023-10-01T09:03:10,971 | ^~~~~~~ 2023-10-01T09:03:13,047 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2023-10-01T09:03:13,049 src/ViennaRNA/plex.c:2317:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:03:13,050 2317 | position_j[i + delta] = min_j_colonne; 2023-10-01T09:03:13,050 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-10-01T09:03:13,052 src/ViennaRNA/plex.c:1934:13: note: ‘min_j_colonne’ was declared here 2023-10-01T09:03:13,053 1934 | int min_j_colonne; 2023-10-01T09:03:13,053 | ^~~~~~~~~~~~~ 2023-10-01T09:03:14,223 src/ViennaRNA/plex.c: In function ‘Lduplexfold’: 2023-10-01T09:03:14,227 src/ViennaRNA/plex.c:4087:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:03:14,228 4087 | position_j[i + delta] = min_j_colonne; 2023-10-01T09:03:14,228 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-10-01T09:03:14,232 src/ViennaRNA/plex.c:3786:13: note: ‘min_j_colonne’ was declared here 2023-10-01T09:03:14,232 3786 | int min_j_colonne; 2023-10-01T09:03:14,233 | ^~~~~~~~~~~~~ 2023-10-01T09:03:15,260 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plex_functions.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plex_functions.o -fopenmp 2023-10-01T09:03:15,514 src/ViennaRNA/plex_functions.c: In function ‘vrna_pk_plex’: 2023-10-01T09:03:15,514 src/ViennaRNA/plex_functions.c:250:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:15,515 250 | for (i = hit_ptr->start_5; i <= hit_ptr->end_5; i++) 2023-10-01T09:03:15,516 | ^~ 2023-10-01T09:03:15,516 src/ViennaRNA/plex_functions.c:252:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:15,517 252 | for (i = hit_ptr->start_3; i <= hit_ptr->end_3; i++) 2023-10-01T09:03:15,518 | ^~ 2023-10-01T09:03:15,518 src/ViennaRNA/plex_functions.c:284:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:15,519 284 | for (i = hit_ptr->start_5 - 1; i < hit_ptr->end_5; i++) 2023-10-01T09:03:15,520 | ^ 2023-10-01T09:03:15,521 src/ViennaRNA/plex_functions.c:288:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:15,521 288 | for (i = hit_ptr->start_3 - 1; i < hit_ptr->end_3; i++) 2023-10-01T09:03:15,522 | ^ 2023-10-01T09:03:15,525 src/ViennaRNA/plex_functions.c: In function ‘duplexfold_XS’: 2023-10-01T09:03:15,526 src/ViennaRNA/plex_functions.c:563:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:15,526 563 | if (n > turn + 1) { 2023-10-01T09:03:15,527 | ^ 2023-10-01T09:03:15,528 src/ViennaRNA/plex_functions.c:575:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:15,528 575 | for (j = i + turn + 1; j <= n; j++) { 2023-10-01T09:03:15,529 | ^~ 2023-10-01T09:03:15,530 src/ViennaRNA/plex_functions.c:591:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:15,530 591 | for (l = i + turn + 1; l <= n; l++) { 2023-10-01T09:03:15,531 | ^~ 2023-10-01T09:03:15,533 src/ViennaRNA/plex_functions.c:632:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:15,534 632 | for (j = i + turn + 1; j <= n; j++) { 2023-10-01T09:03:15,534 | ^~ 2023-10-01T09:03:15,535 In file included from src/ViennaRNA/plex_functions.c:25: 2023-10-01T09:03:15,536 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:15,536 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:03:15,537 | ^ 2023-10-01T09:03:15,538 src/ViennaRNA/plex_functions.c:634:23: note: in expansion of macro ‘MIN2’ 2023-10-01T09:03:15,538 634 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2023-10-01T09:03:15,539 | ^~~~ 2023-10-01T09:03:15,540 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T09:03:15,540 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-01T09:03:15,541 | ^~~ 2023-10-01T09:03:15,542 src/ViennaRNA/plex_functions.c:634:23: note: in expansion of macro ‘MIN2’ 2023-10-01T09:03:15,542 634 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2023-10-01T09:03:15,543 | ^~~~ 2023-10-01T09:03:15,543 src/ViennaRNA/plex_functions.c:640:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:15,544 640 | sl = (l < n) ? S1[l + 1] : -1; 2023-10-01T09:03:15,545 | ^ 2023-10-01T09:03:17,042 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.o -fopenmp 2023-10-01T09:03:17,201 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-10-01T09:03:17,202 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-10-01T09:03:17,203 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:446:40: warning: argument 1 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-10-01T09:03:17,204 446 | isToTheRightPointVector(const double *lineStart, 2023-10-01T09:03:17,204 | ~~~~~~~~~~~~~~~^~~~~~~~~ 2023-10-01T09:03:17,205 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:102:39: note: previously declared as an array ‘const double[2]’ 2023-10-01T09:03:17,205 102 | isToTheRightPointVector(const double lineStart[2], 2023-10-01T09:03:17,206 | ~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T09:03:17,207 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:447:40: warning: argument 2 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-10-01T09:03:17,207 447 | const double *lineVector, 2023-10-01T09:03:17,208 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2023-10-01T09:03:17,208 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:103:39: note: previously declared as an array ‘const double[2]’ 2023-10-01T09:03:17,209 103 | const double lineVector[2], 2023-10-01T09:03:17,210 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2023-10-01T09:03:17,210 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:448:40: warning: argument 3 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-10-01T09:03:17,211 448 | const double *point) 2023-10-01T09:03:17,211 | ~~~~~~~~~~~~~~~^~~~~ 2023-10-01T09:03:17,212 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:104:39: note: previously declared as an array ‘const double[2]’ 2023-10-01T09:03:17,213 104 | const double point[2]); 2023-10-01T09:03:17,213 | ~~~~~~~~~~~~~~^~~~~~~~ 2023-10-01T09:03:17,214 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-10-01T09:03:17,214 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:799:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:17,215 799 | double alpha[3]; 2023-10-01T09:03:17,216 | ^~~~~ 2023-10-01T09:03:17,270 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:19: 2023-10-01T09:03:17,271 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectLineArc’: 2023-10-01T09:03:17,271 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:285:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,272 285 | char *fnName = "intersectLineArc"; 2023-10-01T09:03:17,273 | ^~~~~~ 2023-10-01T09:03:17,273 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectArcArc’: 2023-10-01T09:03:17,274 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:341:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,274 341 | char *fnName = "intersectArcArc"; 2023-10-01T09:03:17,275 | ^~~~~~ 2023-10-01T09:03:17,278 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:19, 2023-10-01T09:03:17,279 from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-10-01T09:03:17,280 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-10-01T09:03:17,280 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-10-01T09:03:17,281 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc: In function ‘ClosestPtPointBulge’: 2023-10-01T09:03:17,282 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:151:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,282 151 | char *fnName = "CLOSEST ON BULGE"; 2023-10-01T09:03:17,283 | ^~~~~~ 2023-10-01T09:03:17,291 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodesBoundingBoxes’: 2023-10-01T09:03:17,292 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:142:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,293 142 | const char *fnName = "intersectNodesBoundingBoxes"; 2023-10-01T09:03:17,293 | ^~~~~~ 2023-10-01T09:03:17,294 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodeNode’: 2023-10-01T09:03:17,295 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:179:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,295 179 | const char *fnName = "intersectNodeNode"; 2023-10-01T09:03:17,296 | ^~~~~~ 2023-10-01T09:03:17,300 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:23: 2023-10-01T09:03:17,300 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc: In function ‘checkAndApplyConfigChanges’: 2023-10-01T09:03:17,301 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:109:13: warning: unused variable ‘newRadius’ [-Wunused-variable] 2023-10-01T09:03:17,301 109 | double newRadius = cfg->radius; 2023-10-01T09:03:17,302 | ^~~~~~~~~ 2023-10-01T09:03:17,303 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:104:13: warning: unused variable ‘oldRadius’ [-Wunused-variable] 2023-10-01T09:03:17,304 104 | double oldRadius = cfg->radius; 2023-10-01T09:03:17,304 | ^~~~~~~~~ 2023-10-01T09:03:17,305 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:100:9: warning: unused variable ‘logTag’ [-Wunused-variable] 2023-10-01T09:03:17,305 100 | char *logTag = intersectionTypeToString(it); 2023-10-01T09:03:17,306 | ^~~~~~ 2023-10-01T09:03:17,307 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:61:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,307 61 | char *fnName = "checkAndApplyConfigChanges"; 2023-10-01T09:03:17,308 | ^~~~~~ 2023-10-01T09:03:17,309 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusLinearSearch’: 2023-10-01T09:03:17,310 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:84:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,310 84 | char *fnName = "shrinkLoopRadiusLinearSearch"; 2023-10-01T09:03:17,311 | ^~~~~~ 2023-10-01T09:03:17,312 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusBinarySearch’: 2023-10-01T09:03:17,312 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:162:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,313 162 | char *fnName = "shrinkLoopRadiusBinarySearch"; 2023-10-01T09:03:17,313 | ^~~~~~ 2023-10-01T09:03:17,314 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeNode’: 2023-10-01T09:03:17,315 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:694:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,316 694 | char *fnName = "optimizeNode"; 2023-10-01T09:03:17,316 | ^~~~~~ 2023-10-01T09:03:17,317 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTreeRecursive’: 2023-10-01T09:03:17,318 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:889:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,318 889 | char *fnName = "optimizeTreeRecursive"; 2023-10-01T09:03:17,319 | ^~~~~~ 2023-10-01T09:03:17,320 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTree’: 2023-10-01T09:03:17,320 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:943:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,321 943 | char *fnName = "optimizeTree"; 2023-10-01T09:03:17,321 | ^~~~~~ 2023-10-01T09:03:17,322 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:22, 2023-10-01T09:03:17,322 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:14: 2023-10-01T09:03:17,323 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasEquidistantIncrease’: 2023-10-01T09:03:17,323 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:53:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,324 53 | char *fnName = "CALC DELTAS EQUIDISTANT INCREASE"; 2023-10-01T09:03:17,324 | ^~~~~~ 2023-10-01T09:03:17,325 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasMaximumFirstDecrease’: 2023-10-01T09:03:17,325 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:82:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,326 82 | char *fnName = "CALC DELTAS MAXIMUM FIRST DECREASE"; 2023-10-01T09:03:17,326 | ^~~~~~ 2023-10-01T09:03:17,327 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasNearestNeighborsFirstDecrease’: 2023-10-01T09:03:17,328 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:191:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,328 191 | char *fnName = "CALC DELTAS NEAREST NEIGHBOR FIRST DECREASE"; 2023-10-01T09:03:17,329 | ^~~~~~ 2023-10-01T09:03:17,330 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltas’: 2023-10-01T09:03:17,330 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:310:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,331 310 | char *fnName = "CALC DELTAS"; 2023-10-01T09:03:17,332 | ^~~~~~ 2023-10-01T09:03:17,332 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘fixIntersectionOfSiblings’: 2023-10-01T09:03:17,333 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:76:18: warning: unused variable ‘rightNode’ [-Wunused-variable] 2023-10-01T09:03:17,334 76 | treeNode *rightNode = getChild(tree, right); 2023-10-01T09:03:17,334 | ^~~~~~~~~ 2023-10-01T09:03:17,335 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:75:18: warning: unused variable ‘leftNode’ [-Wunused-variable] 2023-10-01T09:03:17,335 75 | treeNode *leftNode = getChild(tree, left); 2023-10-01T09:03:17,336 | ^~~~~~~~ 2023-10-01T09:03:17,337 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘handleIntersectionOfSiblings’: 2023-10-01T09:03:17,337 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:103:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,338 103 | char *fnName = "FIX INTERSECTION OF SIBLINGS"; 2023-10-01T09:03:17,339 | ^~~~~~ 2023-10-01T09:03:17,339 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘checkSiblings’: 2023-10-01T09:03:17,340 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:153:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,341 153 | char *fnName = "CHECK SIBLINGS"; 2023-10-01T09:03:17,341 | ^~~~~~ 2023-10-01T09:03:17,344 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:23, 2023-10-01T09:03:17,344 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15: 2023-10-01T09:03:17,345 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘pointToAngle’: 2023-10-01T09:03:17,345 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:31:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,346 31 | char *fnName = "POINT TO ANGLE"; 2023-10-01T09:03:17,346 | ^~~~~~ 2023-10-01T09:03:17,348 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfRectangleAndCircle’: 2023-10-01T09:03:17,348 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:169:14: warning: unused variable ‘staticRectExt’ [-Wunused-variable] 2023-10-01T09:03:17,349 169 | double staticRectExt[2] = { 2023-10-01T09:03:17,349 | ^~~~~~~~~~~~~ 2023-10-01T09:03:17,350 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:74:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,351 74 | char *fnName = "fixIntersectionOfCircleAndRectangle"; 2023-10-01T09:03:17,351 | ^~~~~~ 2023-10-01T09:03:17,352 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfCircles’: 2023-10-01T09:03:17,353 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:204:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,353 204 | char *fnName = "fixIntersectionOfCircles"; 2023-10-01T09:03:17,354 | ^~~~~~ 2023-10-01T09:03:17,354 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxL’: 2023-10-01T09:03:17,355 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:310:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,356 310 | char *fnName = "getRotationAngleLxL"; 2023-10-01T09:03:17,356 | ^~~~~~ 2023-10-01T09:03:17,357 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxS’: 2023-10-01T09:03:17,357 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:349:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,358 349 | char *fnName = "getRotationAngleLxS"; 2023-10-01T09:03:17,359 | ^~~~~~ 2023-10-01T09:03:17,359 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxL’: 2023-10-01T09:03:17,360 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:382:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,360 382 | char *fnName = "getRotationAngleSxL"; 2023-10-01T09:03:17,361 | ^~~~~~ 2023-10-01T09:03:17,361 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxB’: 2023-10-01T09:03:17,362 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:434:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-10-01T09:03:17,363 434 | short intersect = intersectLoopBulges(staticLoop, mobileStem, &mobileBulgeIndex); 2023-10-01T09:03:17,363 | ^~~~~~~~~ 2023-10-01T09:03:17,364 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:413:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,364 413 | char *fnName = "getRotationAngleLxB"; 2023-10-01T09:03:17,365 | ^~~~~~ 2023-10-01T09:03:17,366 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxL’: 2023-10-01T09:03:17,366 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:489:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-10-01T09:03:17,367 489 | short intersect = intersectLoopBulges(mobileLoop, staticStem, &staticBulgeIndex); 2023-10-01T09:03:17,368 | ^~~~~~~~~ 2023-10-01T09:03:17,369 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:477:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,369 477 | char *fnName = "getRotationAngleBxL"; 2023-10-01T09:03:17,370 | ^~~~~~ 2023-10-01T09:03:17,370 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxS’: 2023-10-01T09:03:17,371 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:541:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,371 541 | char *fnName = "getRotationAngleSxS"; 2023-10-01T09:03:17,372 | ^~~~~~ 2023-10-01T09:03:17,372 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxB’: 2023-10-01T09:03:17,373 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:567:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-10-01T09:03:17,373 567 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2023-10-01T09:03:17,374 | ^~~~~~~~~ 2023-10-01T09:03:17,374 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:560:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,375 560 | char *fnName = "getRotationAngleSxB"; 2023-10-01T09:03:17,375 | ^~~~~~ 2023-10-01T09:03:17,376 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxS’: 2023-10-01T09:03:17,377 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:612:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-10-01T09:03:17,377 612 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2023-10-01T09:03:17,378 | ^~~~~~~~~ 2023-10-01T09:03:17,379 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:605:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,379 605 | char *fnName = "getRotationAngleBxS"; 2023-10-01T09:03:17,380 | ^~~~~~ 2023-10-01T09:03:17,381 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxB’: 2023-10-01T09:03:17,381 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:660:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-10-01T09:03:17,382 660 | short intersect = intersectBulgesBulges(staticStem, 2023-10-01T09:03:17,383 | ^~~~~~~~~ 2023-10-01T09:03:17,383 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:650:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,384 650 | char *fnName = "getRotationAngleBxB"; 2023-10-01T09:03:17,385 | ^~~~~~ 2023-10-01T09:03:17,385 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_getRotationSign’: 2023-10-01T09:03:17,386 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘noIntersection’ not handled in switch [-Wswitch] 2023-10-01T09:03:17,386 64 | switch (it) { 2023-10-01T09:03:17,387 | ^~~~~~ 2023-10-01T09:03:17,388 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxL’ not handled in switch [-Wswitch] 2023-10-01T09:03:17,388 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxS’ not handled in switch [-Wswitch] 2023-10-01T09:03:17,389 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxL’ not handled in switch [-Wswitch] 2023-10-01T09:03:17,389 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxS’ not handled in switch [-Wswitch] 2023-10-01T09:03:17,390 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxB’ not handled in switch [-Wswitch] 2023-10-01T09:03:17,391 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxS’ not handled in switch [-Wswitch] 2023-10-01T09:03:17,392 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxB’ not handled in switch [-Wswitch] 2023-10-01T09:03:17,392 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘siblings’ not handled in switch [-Wswitch] 2023-10-01T09:03:17,393 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘exterior’ not handled in switch [-Wswitch] 2023-10-01T09:03:17,393 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:44:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,393 44 | char *fnName = "getRotationSign"; 2023-10-01T09:03:17,394 | ^~~~~~ 2023-10-01T09:03:17,395 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_getRotationSign’: 2023-10-01T09:03:17,395 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:105:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,396 105 | char *fnName = "getRotationSign"; 2023-10-01T09:03:17,396 | ^~~~~~ 2023-10-01T09:03:17,397 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘getRotationSign’: 2023-10-01T09:03:17,398 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:145:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,398 145 | char *fnName = "getRotationSign"; 2023-10-01T09:03:17,399 | ^~~~~~ 2023-10-01T09:03:17,399 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2023-10-01T09:03:17,400 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:222:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,401 222 | char *fnName = "fixIntersectionWithAncestor"; 2023-10-01T09:03:17,401 | ^~~~~~ 2023-10-01T09:03:17,402 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘handleIntersectionWithAncestor’: 2023-10-01T09:03:17,403 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:366:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,403 366 | char *fnName = "handleIntersectionWithAncestor"; 2023-10-01T09:03:17,404 | ^~~~~~ 2023-10-01T09:03:17,405 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_setupExteriorBoundingBoxes’: 2023-10-01T09:03:17,405 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:498:15: warning: unused variable ‘stemSouthX’ [-Wunused-variable] 2023-10-01T09:03:17,406 498 | double stemSouthX = loopX; 2023-10-01T09:03:17,407 | ^~~~~~~~~~ 2023-10-01T09:03:17,407 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:497:15: warning: unused variable ‘stemNorthX’ [-Wunused-variable] 2023-10-01T09:03:17,408 497 | double stemNorthX = loopX; 2023-10-01T09:03:17,409 | ^~~~~~~~~~ 2023-10-01T09:03:17,409 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:482:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,410 482 | char *fnName = "setupExteriorBoundingBoxes"; 2023-10-01T09:03:17,411 | ^~~~~~ 2023-10-01T09:03:17,411 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_setupExteriorBoundingBoxes’: 2023-10-01T09:03:17,412 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:625:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,412 625 | char *fnName = "setupExteriorBoundingBoxes"; 2023-10-01T09:03:17,413 | ^~~~~~ 2023-10-01T09:03:17,413 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE_setupExteriorBoundingBoxes’: 2023-10-01T09:03:17,414 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:715:21: warning: unused variable ‘it’ [-Wunused-variable] 2023-10-01T09:03:17,415 715 | intersectionType it = noIntersection; 2023-10-01T09:03:17,415 | ^~ 2023-10-01T09:03:17,416 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:695:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,416 695 | char *fnName = "setupExteriorBoundingBoxes"; 2023-10-01T09:03:17,417 | ^~~~~~ 2023-10-01T09:03:17,417 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘setupExteriorBoundingBoxes’: 2023-10-01T09:03:17,418 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:759:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,418 759 | char *fnName = "setupExteriorBoundingBoxes"; 2023-10-01T09:03:17,419 | ^~~~~~ 2023-10-01T09:03:17,419 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘checkNodeAgainstAncestors’: 2023-10-01T09:03:17,420 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:950:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,421 950 | char *fnName = "checkNodeAgainstAncestors"; 2023-10-01T09:03:17,421 | ^~~~~~ 2023-10-01T09:03:17,422 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc: In function ‘checkAndFixIntersections’: 2023-10-01T09:03:17,423 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:29:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,423 29 | char *fnName = "checkAndFixIntersections"; 2023-10-01T09:03:17,424 | ^~~~~~ 2023-10-01T09:03:17,425 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘checkRemainingIntersections’: 2023-10-01T09:03:17,426 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:75:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-01T09:03:17,426 75 | char *fnName = "checkRemainingIntersections"; 2023-10-01T09:03:17,427 | ^~~~~~ 2023-10-01T09:03:17,430 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘vrna_plot_coords_puzzler_pt’: 2023-10-01T09:03:17,431 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:505:13: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-10-01T09:03:17,431 505 | short intersect = checkRemainingIntersections(myX, 2023-10-01T09:03:17,433 | ^~~~~~~~~ 2023-10-01T09:03:17,433 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13: 2023-10-01T09:03:17,434 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc: At top level: 2023-10-01T09:03:17,435 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2023-10-01T09:03:17,436 126 | intToMotiv(const int _int); 2023-10-01T09:03:17,436 | ^~~~~~~~~~ 2023-10-01T09:03:17,437 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:16, 2023-10-01T09:03:17,438 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-10-01T09:03:17,438 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:135:1: warning: ‘printLBox’ declared ‘static’ but never defined [-Wunused-function] 2023-10-01T09:03:17,439 135 | printLBox(const loopBox *loop); 2023-10-01T09:03:17,439 | ^~~~~~~~~ 2023-10-01T09:03:17,440 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:139:1: warning: ‘printSBox’ declared ‘static’ but never defined [-Wunused-function] 2023-10-01T09:03:17,441 139 | printSBox(const stemBox *stem); 2023-10-01T09:03:17,441 | ^~~~~~~~~ 2023-10-01T09:03:17,442 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:224:1: warning: ‘printTree’ declared ‘static’ but never defined [-Wunused-function] 2023-10-01T09:03:17,442 224 | printTree(const treeNode *node, 2023-10-01T09:03:17,443 | ^~~~~~~~~ 2023-10-01T09:03:17,511 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:21: 2023-10-01T09:03:17,512 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:482:1: warning: ‘resolveExteriorChildIntersections’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,513 482 | resolveExteriorChildIntersections(treeNode *exteriorNode, 2023-10-01T09:03:17,513 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:17,514 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:305:1: warning: ‘resolveExteriorChildrenIntersectionAffin’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,514 305 | resolveExteriorChildrenIntersectionAffin(treeNode *exteriorNode, 2023-10-01T09:03:17,515 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:17,515 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:754:1: warning: ‘setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,516 754 | setupExteriorBoundingBoxes(treeNode *exterior, 2023-10-01T09:03:17,516 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:17,517 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:690:1: warning: ‘TENTATIVE_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,518 690 | TENTATIVE_setupExteriorBoundingBoxes(treeNode *exterior, 2023-10-01T09:03:17,518 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:17,519 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:620:1: warning: ‘TENTATIVE2_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,520 620 | TENTATIVE2_setupExteriorBoundingBoxes(treeNode *exterior, 2023-10-01T09:03:17,521 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:17,521 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:142:1: warning: ‘getRotationSign’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,522 142 | getRotationSign(const treeNode **const path, 2023-10-01T09:03:17,522 | ^~~~~~~~~~~~~~~ 2023-10-01T09:03:17,523 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:40:1: warning: ‘TENTATIVE3_getRotationSign’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,524 40 | TENTATIVE3_getRotationSign(treeNode **const path, 2023-10-01T09:03:17,525 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:17,526 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:111:1: warning: ‘checkBounds’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,526 111 | checkBounds(const double l1, 2023-10-01T09:03:17,527 | ^~~~~~~~~~~ 2023-10-01T09:03:17,528 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:471:1: warning: ‘TestLoopBulge’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,528 471 | TestLoopBulge(const double c[2], 2023-10-01T09:03:17,529 | ^~~~~~~~~~~~~ 2023-10-01T09:03:17,530 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:207:1: warning: ‘ClosestPtPointTriangle’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,530 207 | ClosestPtPointTriangle(const double p[2], 2023-10-01T09:03:17,531 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:17,531 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1056:1: warning: ‘getChildNode’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,532 1056 | getChildNode(treeNode *tree, 2023-10-01T09:03:17,532 | ^~~~~~~~~~~~ 2023-10-01T09:03:17,533 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1038:1: warning: ‘getStemCenter’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,533 1038 | getStemCenter(const treeNode *node, 2023-10-01T09:03:17,534 | ^~~~~~~~~~~~~ 2023-10-01T09:03:17,535 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:569:1: warning: ‘getExterior’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,535 569 | getExterior(treeNode *node) 2023-10-01T09:03:17,536 | ^~~~~~~~~~~ 2023-10-01T09:03:17,536 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:537:1: warning: ‘getPairedAngle’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,537 537 | getPairedAngle(const treeNode *node) 2023-10-01T09:03:17,537 | ^~~~~~~~~~~~~~ 2023-10-01T09:03:17,538 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:235:1: warning: ‘rotateStemBox’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,538 235 | rotateStemBox(stemBox *box, 2023-10-01T09:03:17,539 | ^~~~~~~~~~~~~ 2023-10-01T09:03:17,540 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:203:1: warning: ‘rotateLoopBox’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,540 203 | rotateLoopBox(loopBox *box, 2023-10-01T09:03:17,541 | ^~~~~~~~~~~~~ 2023-10-01T09:03:17,541 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,542 243 | getArcAngleDegree(const config *cfg, 2023-10-01T09:03:17,543 | ^~~~~~~~~~~~~~~~~ 2023-10-01T09:03:17,544 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,544 216 | cfgPrintConfig(config *cfg) 2023-10-01T09:03:17,545 | ^~~~~~~~~~~~~~ 2023-10-01T09:03:17,546 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:506:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,546 506 | normalizeAngle(const double angle, 2023-10-01T09:03:17,547 | ^~~~~~~~~~~~~~ 2023-10-01T09:03:17,548 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14: 2023-10-01T09:03:17,548 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-10-01T09:03:17,549 116 | angleToDistance(const double radius, 2023-10-01T09:03:17,550 | ^~~~~~~~~~~~~~~ 2023-10-01T09:03:21,701 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2023-10-01T09:03:21,701 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:255:12: warning: ‘interiorChildAngle’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:03:21,702 255 | double diffToStraight = MATH_PI - interiorChildAngle; 2023-10-01T09:03:21,703 | ^~~~~~~~~~~~~~ 2023-10-01T09:03:21,704 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:228:10: note: ‘interiorChildAngle’ was declared here 2023-10-01T09:03:21,704 228 | double interiorChildAngle; 2023-10-01T09:03:21,705 | ^~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:23,290 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler/RNAturtle.o -fopenmp 2023-10-01T09:03:23,445 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-10-01T09:03:23,445 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-10-01T09:03:23,446 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:446:40: warning: argument 1 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-10-01T09:03:23,446 446 | isToTheRightPointVector(const double *lineStart, 2023-10-01T09:03:23,447 | ~~~~~~~~~~~~~~~^~~~~~~~~ 2023-10-01T09:03:23,448 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:102:39: note: previously declared as an array ‘const double[2]’ 2023-10-01T09:03:23,448 102 | isToTheRightPointVector(const double lineStart[2], 2023-10-01T09:03:23,449 | ~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T09:03:23,449 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:447:40: warning: argument 2 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-10-01T09:03:23,450 447 | const double *lineVector, 2023-10-01T09:03:23,451 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2023-10-01T09:03:23,451 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:103:39: note: previously declared as an array ‘const double[2]’ 2023-10-01T09:03:23,452 103 | const double lineVector[2], 2023-10-01T09:03:23,453 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2023-10-01T09:03:23,453 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:448:40: warning: argument 3 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-10-01T09:03:23,454 448 | const double *point) 2023-10-01T09:03:23,455 | ~~~~~~~~~~~~~~~^~~~~ 2023-10-01T09:03:23,455 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:104:39: note: previously declared as an array ‘const double[2]’ 2023-10-01T09:03:23,456 104 | const double point[2]); 2023-10-01T09:03:23,457 | ~~~~~~~~~~~~~~^~~~~~~~ 2023-10-01T09:03:23,457 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-10-01T09:03:23,458 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:799:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:23,459 799 | double alpha[3]; 2023-10-01T09:03:23,459 | ^~~~~ 2023-10-01T09:03:23,491 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13: 2023-10-01T09:03:23,492 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc: At top level: 2023-10-01T09:03:23,493 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2023-10-01T09:03:23,494 126 | intToMotiv(const int _int); 2023-10-01T09:03:23,494 | ^~~~~~~~~~ 2023-10-01T09:03:23,514 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:705:1: warning: ‘cfgIsValid’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,515 705 | cfgIsValid(config *cfg, 2023-10-01T09:03:23,516 | ^~~~~~~~~~ 2023-10-01T09:03:23,517 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:648:1: warning: ‘cfgApplyChanges’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,517 648 | cfgApplyChanges(config *cfg, 2023-10-01T09:03:23,519 | ^~~~~~~~~~~~~~~ 2023-10-01T09:03:23,519 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,520 243 | getArcAngleDegree(const config *cfg, 2023-10-01T09:03:23,520 | ^~~~~~~~~~~~~~~~~ 2023-10-01T09:03:23,521 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,522 216 | cfgPrintConfig(config *cfg) 2023-10-01T09:03:23,522 | ^~~~~~~~~~~~~~ 2023-10-01T09:03:23,523 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:207:1: warning: ‘cfgFreeConfig’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,523 207 | cfgFreeConfig(config *cfg) 2023-10-01T09:03:23,524 | ^~~~~~~~~~~~~ 2023-10-01T09:03:23,525 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:184:1: warning: ‘cfgCloneConfig’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,525 184 | cfgCloneConfig(const config *cfg) 2023-10-01T09:03:23,526 | ^~~~~~~~~~~~~~ 2023-10-01T09:03:23,527 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:764:1: warning: ‘normal’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,527 764 | normal(const double v[2], 2023-10-01T09:03:23,528 | ^~~~~~ 2023-10-01T09:03:23,529 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:723:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,529 723 | getCutPointsOfCircleAndLine(const double *center, 2023-10-01T09:03:23,530 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:23,531 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:608:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,532 608 | getCutPointsOfCircles(const double *c1, 2023-10-01T09:03:23,532 | ^~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:23,533 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:568:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,534 568 | translatePointByVector(const double *point, 2023-10-01T09:03:23,535 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:23,536 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:555:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,537 555 | rotateVectorByAngle(const double *vector, 2023-10-01T09:03:23,538 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:23,538 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:506:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,539 506 | normalizeAngle(const double angle, 2023-10-01T09:03:23,540 | ^~~~~~~~~~~~~~ 2023-10-01T09:03:23,541 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:490:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,542 490 | anglePtPtPt2D(const double *p1, 2023-10-01T09:03:23,542 | ^~~~~~~~~~~~~ 2023-10-01T09:03:23,543 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:446:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,544 446 | isToTheRightPointVector(const double *lineStart, 2023-10-01T09:03:23,545 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:23,546 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:359:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,546 359 | vectorLength2DSquared(const double vector[2]) 2023-10-01T09:03:23,547 | ^~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:23,548 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:342:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,549 342 | toRad(double angle) 2023-10-01T09:03:23,550 | ^~~~~ 2023-10-01T09:03:23,551 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14: 2023-10-01T09:03:23,551 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,552 116 | angleToDistance(const double radius, 2023-10-01T09:03:23,553 | ^~~~~~~~~~~~~~~ 2023-10-01T09:03:23,553 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,554 108 | distanceToAngle(const double radius, 2023-10-01T09:03:23,555 | ^~~~~~~~~~~~~~~ 2023-10-01T09:03:23,555 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2023-10-01T09:03:23,556 62 | bubblesort(const int numValues, 2023-10-01T09:03:23,556 | ^~~~~~~~~~ 2023-10-01T09:03:24,542 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/alignments.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/alignments.o -fopenmp 2023-10-01T09:03:24,853 src/ViennaRNA/plotting/alignments.c: In function ‘vrna_file_PS_aln_slice’: 2023-10-01T09:03:24,854 src/ViennaRNA/plotting/alignments.c:147:34: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-01T09:03:24,855 147 | columnWidth = (columns == 0) ? length : columns; 2023-10-01T09:03:24,855 | ^~~~~~ 2023-10-01T09:03:24,856 src/ViennaRNA/plotting/alignments.c:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:24,857 245 | for (i = start; i <= end; i++) { 2023-10-01T09:03:24,858 | ^~ 2023-10-01T09:03:24,858 src/ViennaRNA/plotting/alignments.c:247:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:24,859 247 | if ((j > i) && (j <= end)) { 2023-10-01T09:03:24,860 | ^~ 2023-10-01T09:03:24,860 src/ViennaRNA/plotting/alignments.c:327:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:24,861 327 | if (length - currPos < max_len) 2023-10-01T09:03:24,862 | ^ 2023-10-01T09:03:24,862 src/ViennaRNA/plotting/alignments.c:334:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:03:24,863 334 | for (j = 0; j < (currPos + strlen(tmpBuffer)); j++) 2023-10-01T09:03:24,863 | ^ 2023-10-01T09:03:24,873 In file included from src/ViennaRNA/plotting/alignments.c:26: 2023-10-01T09:03:24,874 src/ViennaRNA/plotting/ps_helpers.inc: At top level: 2023-10-01T09:03:24,875 src/ViennaRNA/plotting/ps_helpers.inc:151:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2023-10-01T09:03:24,875 151 | print_PS_coords(FILE *fh, 2023-10-01T09:03:24,876 | ^~~~~~~~~~~~~~~ 2023-10-01T09:03:24,877 src/ViennaRNA/plotting/ps_helpers.inc:131:1: warning: ‘print_PS_sequence’ defined but not used [-Wunused-function] 2023-10-01T09:03:24,877 131 | print_PS_sequence(FILE *fh, 2023-10-01T09:03:24,878 | ^~~~~~~~~~~~~~~~~ 2023-10-01T09:03:25,406 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/layouts.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/layouts.o -fopenmp 2023-10-01T09:03:25,657 src/ViennaRNA/plotting/layouts.c: In function ‘simple_xy_coordinates’: 2023-10-01T09:03:25,657 src/ViennaRNA/plotting/layouts.c:547:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:25,658 547 | int ret, n; 2023-10-01T09:03:25,659 | ^~~ 2023-10-01T09:03:25,660 src/ViennaRNA/plotting/layouts.c: In function ‘simple_circplot_coordinates’: 2023-10-01T09:03:25,661 src/ViennaRNA/plotting/layouts.c:570:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:25,661 570 | int ret, n; 2023-10-01T09:03:25,662 | ^~~ 2023-10-01T09:03:26,146 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/naview/naview.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/naview/naview.o -fopenmp 2023-10-01T09:03:27,198 In function ‘determine_radius’, 2023-10-01T09:03:27,198 inlined from ‘traverse_loop’ at src/ViennaRNA/plotting/naview/naview.c:569:3: 2023-10-01T09:03:27,199 src/ViennaRNA/plotting/naview/naview.c:963:22: warning: ‘imindit’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:03:27,199 963 | lp->connections[imindit]->extruded = true; 2023-10-01T09:03:27,200 | ^ 2023-10-01T09:03:27,201 src/ViennaRNA/plotting/naview/naview.c: In function ‘traverse_loop’: 2023-10-01T09:03:27,201 src/ViennaRNA/plotting/naview/naview.c:928:21: note: ‘imindit’ was declared here 2023-10-01T09:03:27,202 928 | int i,j,end,start,imindit; 2023-10-01T09:03:27,203 | ^~~~~~~ 2023-10-01T09:03:27,204 src/ViennaRNA/plotting/naview/naview.c:629:27: warning: ‘imaxloop’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:03:27,205 629 | cp = lp->connections[icend]; 2023-10-01T09:03:27,205 | ^ 2023-10-01T09:03:27,206 src/ViennaRNA/plotting/naview/naview.c:540:7: note: ‘imaxloop’ was declared here 2023-10-01T09:03:27,207 540 | int imaxloop; 2023-10-01T09:03:27,207 | ^~~~~~~~ 2023-10-01T09:03:27,953 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/plot_utils.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/plot_utils.o -fopenmp 2023-10-01T09:03:28,087 src/ViennaRNA/plotting/plot_utils.c: In function ‘vrna_annotate_covar_pairs’: 2023-10-01T09:03:28,088 src/ViennaRNA/plotting/plot_utils.c:205:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:28,089 205 | for (s = 0; s < n_seq; s++) { 2023-10-01T09:03:28,089 | ^ 2023-10-01T09:03:28,426 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/probabilities.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/probabilities.o -fopenmp 2023-10-01T09:03:28,783 src/ViennaRNA/plotting/probabilities.c: In function ‘vrna_plot_dp_EPS’: 2023-10-01T09:03:28,784 src/ViennaRNA/plotting/probabilities.c:296:62: warning: variable ‘linright_num’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:28,785 296 | linbottom_size, linleft_num, linleft_size, linright_num, 2023-10-01T09:03:28,785 | ^~~~~~~~~~~~ 2023-10-01T09:03:28,785 src/ViennaRNA/plotting/probabilities.c:296:35: warning: variable ‘linleft_num’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:28,786 296 | linbottom_size, linleft_num, linleft_size, linright_num, 2023-10-01T09:03:28,786 | ^~~~~~~~~~~ 2023-10-01T09:03:28,787 src/ViennaRNA/plotting/probabilities.c:295:47: warning: variable ‘linbottom_num’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:28,787 295 | int i, lintop_num, lintop_size, linbottom_num, 2023-10-01T09:03:28,788 | ^~~~~~~~~~~~~ 2023-10-01T09:03:28,789 src/ViennaRNA/plotting/probabilities.c:295:22: warning: variable ‘lintop_num’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:28,789 295 | int i, lintop_num, lintop_size, linbottom_num, 2023-10-01T09:03:28,790 | ^~~~~~~~~~ 2023-10-01T09:03:28,800 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_accessibility’: 2023-10-01T09:03:28,801 src/ViennaRNA/plotting/probabilities.c:847:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:28,802 847 | for(i = 0; i < length; i++){ 2023-10-01T09:03:28,803 | ^ 2023-10-01T09:03:28,803 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_ud_motif_prob’: 2023-10-01T09:03:28,804 src/ViennaRNA/plotting/probabilities.c:880:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:28,805 880 | for(i = 0; i < actual_length; i++, actual_pos++){ 2023-10-01T09:03:28,806 | ^ 2023-10-01T09:03:28,829 In file included from src/ViennaRNA/plotting/probabilities.c:28: 2023-10-01T09:03:28,830 src/ViennaRNA/plotting/ps_helpers.inc: At top level: 2023-10-01T09:03:28,831 src/ViennaRNA/plotting/ps_helpers.inc:151:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2023-10-01T09:03:28,831 151 | print_PS_coords(FILE *fh, 2023-10-01T09:03:28,832 | ^~~~~~~~~~~~~~~ 2023-10-01T09:03:30,054 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/structures.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/structures.o -fopenmp 2023-10-01T09:03:30,317 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/svgArcs.inc:14, 2023-10-01T09:03:30,318 from src/ViennaRNA/plotting/structures.c:28: 2023-10-01T09:03:30,319 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:446:40: warning: argument 1 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-10-01T09:03:30,320 446 | isToTheRightPointVector(const double *lineStart, 2023-10-01T09:03:30,320 | ~~~~~~~~~~~~~~~^~~~~~~~~ 2023-10-01T09:03:30,321 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:102:39: note: previously declared as an array ‘const double[2]’ 2023-10-01T09:03:30,321 102 | isToTheRightPointVector(const double lineStart[2], 2023-10-01T09:03:30,322 | ~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-01T09:03:30,322 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:447:40: warning: argument 2 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-10-01T09:03:30,323 447 | const double *lineVector, 2023-10-01T09:03:30,323 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2023-10-01T09:03:30,324 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:103:39: note: previously declared as an array ‘const double[2]’ 2023-10-01T09:03:30,324 103 | const double lineVector[2], 2023-10-01T09:03:30,325 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2023-10-01T09:03:30,325 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:448:40: warning: argument 3 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-10-01T09:03:30,326 448 | const double *point) 2023-10-01T09:03:30,326 | ~~~~~~~~~~~~~~~^~~~~ 2023-10-01T09:03:30,327 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:104:39: note: previously declared as an array ‘const double[2]’ 2023-10-01T09:03:30,327 104 | const double point[2]); 2023-10-01T09:03:30,328 | ~~~~~~~~~~~~~~^~~~~~~~ 2023-10-01T09:03:30,329 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-10-01T09:03:30,330 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:799:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:30,330 799 | double alpha[3]; 2023-10-01T09:03:30,331 | ^~~~~ 2023-10-01T09:03:30,445 src/ViennaRNA/plotting/structures.c: In function ‘rnaplot_EPS’: 2023-10-01T09:03:30,446 src/ViennaRNA/plotting/structures.c:171:18: warning: unused variable ‘Y’ [-Wunused-variable] 2023-10-01T09:03:30,446 171 | float *X, *Y; 2023-10-01T09:03:30,447 | ^ 2023-10-01T09:03:30,448 src/ViennaRNA/plotting/structures.c:171:14: warning: unused variable ‘X’ [-Wunused-variable] 2023-10-01T09:03:30,449 171 | float *X, *Y; 2023-10-01T09:03:30,449 | ^ 2023-10-01T09:03:30,450 src/ViennaRNA/plotting/structures.c:168:31: warning: unused variable ‘ymax’ [-Wunused-variable] 2023-10-01T09:03:30,451 168 | float xmin, xmax, ymin, ymax; 2023-10-01T09:03:30,451 | ^~~~ 2023-10-01T09:03:30,452 src/ViennaRNA/plotting/structures.c:168:25: warning: unused variable ‘ymin’ [-Wunused-variable] 2023-10-01T09:03:30,452 168 | float xmin, xmax, ymin, ymax; 2023-10-01T09:03:30,453 | ^~~~ 2023-10-01T09:03:30,453 src/ViennaRNA/plotting/structures.c:168:19: warning: unused variable ‘xmax’ [-Wunused-variable] 2023-10-01T09:03:30,454 168 | float xmin, xmax, ymin, ymax; 2023-10-01T09:03:30,455 | ^~~~ 2023-10-01T09:03:30,455 src/ViennaRNA/plotting/structures.c:168:13: warning: unused variable ‘xmin’ [-Wunused-variable] 2023-10-01T09:03:30,456 168 | float xmin, xmax, ymin, ymax; 2023-10-01T09:03:30,457 | ^~~~ 2023-10-01T09:03:30,458 src/ViennaRNA/plotting/structures.c: In function ‘PS_rna_plot_snoop_a’: 2023-10-01T09:03:30,459 src/ViennaRNA/plotting/structures.c:632:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:03:30,460 632 | if (cut_point > 0 && cut_point <= strlen(string)) 2023-10-01T09:03:30,460 | ^~ 2023-10-01T09:03:30,494 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: At top level: 2023-10-01T09:03:30,495 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:792:1: warning: ‘circle’ defined but not used [-Wunused-function] 2023-10-01T09:03:30,495 792 | circle(const double P1[2], 2023-10-01T09:03:30,495 | ^~~~~~ 2023-10-01T09:03:30,496 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:764:1: warning: ‘normal’ defined but not used [-Wunused-function] 2023-10-01T09:03:30,496 764 | normal(const double v[2], 2023-10-01T09:03:30,497 | ^~~~~~ 2023-10-01T09:03:30,498 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:754:1: warning: ‘vector’ defined but not used [-Wunused-function] 2023-10-01T09:03:30,498 754 | vector(const double pStart[2], 2023-10-01T09:03:30,498 | ^~~~~~ 2023-10-01T09:03:30,499 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:723:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2023-10-01T09:03:30,499 723 | getCutPointsOfCircleAndLine(const double *center, 2023-10-01T09:03:30,500 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:30,501 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:608:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2023-10-01T09:03:30,501 608 | getCutPointsOfCircles(const double *c1, 2023-10-01T09:03:30,502 | ^~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:30,502 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:568:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2023-10-01T09:03:30,503 568 | translatePointByVector(const double *point, 2023-10-01T09:03:30,503 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:30,504 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:555:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2023-10-01T09:03:30,505 555 | rotateVectorByAngle(const double *vector, 2023-10-01T09:03:30,505 | ^~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:30,506 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:506:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-10-01T09:03:30,507 506 | normalizeAngle(const double angle, 2023-10-01T09:03:30,507 | ^~~~~~~~~~~~~~ 2023-10-01T09:03:30,508 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:490:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2023-10-01T09:03:30,509 490 | anglePtPtPt2D(const double *p1, 2023-10-01T09:03:30,509 | ^~~~~~~~~~~~~ 2023-10-01T09:03:30,510 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:446:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2023-10-01T09:03:30,510 446 | isToTheRightPointVector(const double *lineStart, 2023-10-01T09:03:30,511 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:30,512 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:359:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2023-10-01T09:03:30,512 359 | vectorLength2DSquared(const double vector[2]) 2023-10-01T09:03:30,513 | ^~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:30,514 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:342:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2023-10-01T09:03:30,514 342 | toRad(double angle) 2023-10-01T09:03:30,515 | ^~~~~ 2023-10-01T09:03:30,516 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:335:1: warning: ‘toDegree’ defined but not used [-Wunused-function] 2023-10-01T09:03:30,517 335 | toDegree(double angle) 2023-10-01T09:03:30,517 | ^~~~~~~~ 2023-10-01T09:03:30,518 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14: 2023-10-01T09:03:30,519 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-10-01T09:03:30,519 116 | angleToDistance(const double radius, 2023-10-01T09:03:30,520 | ^~~~~~~~~~~~~~~ 2023-10-01T09:03:30,520 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2023-10-01T09:03:30,521 108 | distanceToAngle(const double radius, 2023-10-01T09:03:30,521 | ^~~~~~~~~~~~~~~ 2023-10-01T09:03:30,522 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2023-10-01T09:03:30,522 62 | bubblesort(const int numValues, 2023-10-01T09:03:30,523 | ^~~~~~~~~~ 2023-10-01T09:03:31,810 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/ribo.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ribo.o -fopenmp 2023-10-01T09:03:33,443 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/search/BoyerMoore.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/search/BoyerMoore.o -fopenmp 2023-10-01T09:03:33,828 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/sequence.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sequence.o -fopenmp 2023-10-01T09:03:34,705 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/snofold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/snofold.o -fopenmp 2023-10-01T09:03:34,941 src/ViennaRNA/snofold.c: In function ‘snofold’: 2023-10-01T09:03:34,941 src/ViennaRNA/snofold.c:369:30: warning: variable ‘bonus_cnt’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:34,942 369 | int length, energy, bonus, bonus_cnt, s; 2023-10-01T09:03:34,943 | ^~~~~~~~~ 2023-10-01T09:03:34,943 src/ViennaRNA/snofold.c:369:23: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:34,944 369 | int length, energy, bonus, bonus_cnt, s; 2023-10-01T09:03:34,944 | ^~~~~ 2023-10-01T09:03:34,947 src/ViennaRNA/snofold.c: In function ‘alisnofold’: 2023-10-01T09:03:34,948 src/ViennaRNA/snofold.c:571:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:03:34,948 571 | if (strlen(strings[s]) != length) 2023-10-01T09:03:34,949 | ^~ 2023-10-01T09:03:34,953 src/ViennaRNA/snofold.c: In function ‘alifill_arrays’: 2023-10-01T09:03:34,954 src/ViennaRNA/snofold.c:603:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:34,954 603 | int bonus, n_seq, s; 2023-10-01T09:03:34,955 | ^~~~~ 2023-10-01T09:03:34,958 src/ViennaRNA/snofold.c: In function ‘alibacktrack’: 2023-10-01T09:03:34,959 src/ViennaRNA/snofold.c:767:34: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:34,959 767 | int ml, ss, cij, traced, i1, j1, p, q; 2023-10-01T09:03:34,960 | ^~ 2023-10-01T09:03:34,960 src/ViennaRNA/snofold.c:767:30: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:34,961 767 | int ml, ss, cij, traced, i1, j1, p, q; 2023-10-01T09:03:34,961 | ^~ 2023-10-01T09:03:34,962 src/ViennaRNA/snofold.c:754:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:34,962 754 | int bonus, n_seq, *type; 2023-10-01T09:03:34,963 | ^~~~~ 2023-10-01T09:03:34,970 src/ViennaRNA/snofold.c: In function ‘backtrack’: 2023-10-01T09:03:34,971 src/ViennaRNA/snofold.c:1132:30: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:34,971 1132 | int ml, cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2023-10-01T09:03:34,972 | ^~ 2023-10-01T09:03:34,972 src/ViennaRNA/snofold.c:1132:26: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:34,973 1132 | int ml, cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2023-10-01T09:03:34,973 | ^~ 2023-10-01T09:03:34,974 src/ViennaRNA/snofold.c: In function ‘alisnobacktrack_fold_from_pair’: 2023-10-01T09:03:34,974 src/ViennaRNA/snofold.c:1290:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-01T09:03:34,975 1290 | if (strlen(strings[s]) != length) 2023-10-01T09:03:34,976 | ^~ 2023-10-01T09:03:35,008 src/ViennaRNA/snofold.c: At top level: 2023-10-01T09:03:35,008 src/ViennaRNA/snofold.c:154:15: warning: ‘alpha’ defined but not used [-Wunused-variable] 2023-10-01T09:03:35,009 154 | PRIVATE char alpha[] = "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz"; 2023-10-01T09:03:35,010 | ^~~~~ 2023-10-01T09:03:37,423 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/snoop.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/snoop.o -fopenmp 2023-10-01T09:03:37,668 src/ViennaRNA/snoop.c: In function ‘alisnoopfold’: 2023-10-01T09:03:37,669 src/ViennaRNA/snoop.c:249:22: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,669 249 | int i, j, E, l1, Emin = INF, i_min = 0, j_min = 0; 2023-10-01T09:03:37,670 | ^~ 2023-10-01T09:03:37,679 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack’: 2023-10-01T09:03:37,680 src/ViennaRNA/snoop.c:836:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,680 836 | int min_k, max_k; 2023-10-01T09:03:37,681 | ^~~~~ 2023-10-01T09:03:37,681 src/ViennaRNA/snoop.c:836:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,682 836 | int min_k, max_k; 2023-10-01T09:03:37,683 | ^~~~~ 2023-10-01T09:03:37,694 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt’: 2023-10-01T09:03:37,695 src/ViennaRNA/snoop.c:1141:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,696 1141 | int Loop_E; 2023-10-01T09:03:37,696 | ^~~~~~ 2023-10-01T09:03:37,696 src/ViennaRNA/snoop.c:1139:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,697 1139 | int Loop_D; 2023-10-01T09:03:37,697 | ^~~~~~ 2023-10-01T09:03:37,697 src/ViennaRNA/snoop.c:1138:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,698 1138 | int Duplex_El, Duplex_Er; 2023-10-01T09:03:37,698 | ^~~~~~~~~ 2023-10-01T09:03:37,699 src/ViennaRNA/snoop.c:1138:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,699 1138 | int Duplex_El, Duplex_Er; 2023-10-01T09:03:37,700 | ^~~~~~~~~ 2023-10-01T09:03:37,700 src/ViennaRNA/snoop.c:1112:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,701 1112 | int max_pos; 2023-10-01T09:03:37,701 | ^~~~~~~ 2023-10-01T09:03:37,703 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list’: 2023-10-01T09:03:37,704 src/ViennaRNA/snoop.c:1433:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,705 1433 | int min_k, max_k; 2023-10-01T09:03:37,705 | ^~~~~ 2023-10-01T09:03:37,706 src/ViennaRNA/snoop.c:1433:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,706 1433 | int min_k, max_k; 2023-10-01T09:03:37,707 | ^~~~~ 2023-10-01T09:03:37,712 src/ViennaRNA/snoop.c:1376:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,712 1376 | int Loop_E; 2023-10-01T09:03:37,713 | ^~~~~~ 2023-10-01T09:03:37,714 src/ViennaRNA/snoop.c:1374:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,714 1374 | int Loop_D; 2023-10-01T09:03:37,715 | ^~~~~~ 2023-10-01T09:03:37,715 src/ViennaRNA/snoop.c:1373:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,716 1373 | int Duplex_El, Duplex_Er; 2023-10-01T09:03:37,717 | ^~~~~~~~~ 2023-10-01T09:03:37,717 src/ViennaRNA/snoop.c:1373:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,718 1373 | int Duplex_El, Duplex_Er; 2023-10-01T09:03:37,719 | ^~~~~~~~~ 2023-10-01T09:03:37,719 src/ViennaRNA/snoop.c:1347:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,720 1347 | int max_pos; 2023-10-01T09:03:37,721 | ^~~~~~~ 2023-10-01T09:03:37,724 src/ViennaRNA/snoop.c: In function ‘snoopfold’: 2023-10-01T09:03:37,726 src/ViennaRNA/snoop.c:1818:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,726 1818 | int min_k, max_k; 2023-10-01T09:03:37,727 | ^~~~~ 2023-10-01T09:03:37,727 src/ViennaRNA/snoop.c:1818:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,728 1818 | int min_k, max_k; 2023-10-01T09:03:37,729 | ^~~~~ 2023-10-01T09:03:37,732 src/ViennaRNA/snoop.c:1764:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,733 1764 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-10-01T09:03:37,734 | ^~ 2023-10-01T09:03:37,737 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS_fill’: 2023-10-01T09:03:37,739 src/ViennaRNA/snoop.c:2015:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,739 2015 | int min_k, max_k; 2023-10-01T09:03:37,740 | ^~~~~ 2023-10-01T09:03:37,741 src/ViennaRNA/snoop.c:2015:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,741 2015 | int min_k, max_k; 2023-10-01T09:03:37,742 | ^~~~~ 2023-10-01T09:03:37,745 src/ViennaRNA/snoop.c:1959:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,745 1959 | int Loop_E; 2023-10-01T09:03:37,746 | ^~~~~~ 2023-10-01T09:03:37,747 src/ViennaRNA/snoop.c:1957:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,747 1957 | int Loop_D; 2023-10-01T09:03:37,747 | ^~~~~~ 2023-10-01T09:03:37,748 src/ViennaRNA/snoop.c:1956:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,749 1956 | int Duplex_El, Duplex_Er; 2023-10-01T09:03:37,749 | ^~~~~~~~~ 2023-10-01T09:03:37,750 src/ViennaRNA/snoop.c:1956:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,750 1956 | int Duplex_El, Duplex_Er; 2023-10-01T09:03:37,751 | ^~~~~~~~~ 2023-10-01T09:03:37,751 src/ViennaRNA/snoop.c:1947:42: warning: variable ‘j_min’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,752 1947 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2023-10-01T09:03:37,752 | ^~~~~ 2023-10-01T09:03:37,753 src/ViennaRNA/snoop.c:1947:31: warning: variable ‘i_min’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,754 1947 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2023-10-01T09:03:37,754 | ^~~~~ 2023-10-01T09:03:37,758 src/ViennaRNA/snoop.c: In function ‘snoop_subopt’: 2023-10-01T09:03:37,759 src/ViennaRNA/snoop.c:2102:25: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,760 2102 | int i, j, n1, n2, E, n_subopt = 0, n_max; 2023-10-01T09:03:37,761 | ^ 2023-10-01T09:03:37,766 src/ViennaRNA/snoop.c: In function ‘snoop_subopt_XS’: 2023-10-01T09:03:37,768 src/ViennaRNA/snoop.c:2437:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,769 2437 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2023-10-01T09:03:37,769 | ^~~~ 2023-10-01T09:03:37,770 src/ViennaRNA/snoop.c:2437:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,771 2437 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2023-10-01T09:03:37,772 | ^~~ 2023-10-01T09:03:37,773 src/ViennaRNA/snoop.c:2304:7: warning: variable ‘u’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,773 2304 | int u; 2023-10-01T09:03:37,774 | ^ 2023-10-01T09:03:37,775 src/ViennaRNA/snoop.c:2298:7: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,775 2298 | int Loop_D; 2023-10-01T09:03:37,776 | ^~~~~~ 2023-10-01T09:03:37,777 src/ViennaRNA/snoop.c:2297:29: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,777 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-10-01T09:03:37,778 | ^~~~~~ 2023-10-01T09:03:37,779 src/ViennaRNA/snoop.c:2297:18: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,779 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-10-01T09:03:37,780 | ^~~~~~~~~ 2023-10-01T09:03:37,780 src/ViennaRNA/snoop.c:2297:7: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,781 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-10-01T09:03:37,781 | ^~~~~~~~~ 2023-10-01T09:03:37,782 src/ViennaRNA/snoop.c:2289:16: warning: variable ‘n_max’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,783 2289 | int i, j, E, n_max; 2023-10-01T09:03:37,783 | ^~~~~ 2023-10-01T09:03:37,784 src/ViennaRNA/snoop.c:2289:13: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,785 2289 | int i, j, E, n_max; 2023-10-01T09:03:37,785 | ^ 2023-10-01T09:03:37,790 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack’: 2023-10-01T09:03:37,792 src/ViennaRNA/snoop.c:2588:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,793 2588 | int min_k, max_k; 2023-10-01T09:03:37,793 | ^~~~~ 2023-10-01T09:03:37,794 src/ViennaRNA/snoop.c:2588:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,795 2588 | int min_k, max_k; 2023-10-01T09:03:37,795 | ^~~~~ 2023-10-01T09:03:37,807 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2023-10-01T09:03:37,809 src/ViennaRNA/snoop.c:2907:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,810 2907 | int min_k, max_k; 2023-10-01T09:03:37,810 | ^~~~~ 2023-10-01T09:03:37,812 src/ViennaRNA/snoop.c:2907:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,813 2907 | int min_k, max_k; 2023-10-01T09:03:37,813 | ^~~~~ 2023-10-01T09:03:37,819 src/ViennaRNA/snoop.c:2842:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,820 2842 | int Loop_E; 2023-10-01T09:03:37,821 | ^~~~~~ 2023-10-01T09:03:37,822 src/ViennaRNA/snoop.c:2840:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,822 2840 | int Loop_D; 2023-10-01T09:03:37,823 | ^~~~~~ 2023-10-01T09:03:37,824 src/ViennaRNA/snoop.c:2839:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,825 2839 | int Duplex_El, Duplex_Er; 2023-10-01T09:03:37,825 | ^~~~~~~~~ 2023-10-01T09:03:37,827 src/ViennaRNA/snoop.c:2839:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,827 2839 | int Duplex_El, Duplex_Er; 2023-10-01T09:03:37,828 | ^~~~~~~~~ 2023-10-01T09:03:37,829 src/ViennaRNA/snoop.c:2824:7: warning: variable ‘max_pos_j’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,830 2824 | int max_pos_j = INF; 2023-10-01T09:03:37,830 | ^~~~~~~~~ 2023-10-01T09:03:37,832 src/ViennaRNA/snoop.c:2810:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,832 2810 | int max_pos; 2023-10-01T09:03:37,833 | ^~~~~~~ 2023-10-01T09:03:37,838 src/ViennaRNA/snoop.c: In function ‘find_max_snoop_XS’: 2023-10-01T09:03:37,840 src/ViennaRNA/snoop.c:3155:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,841 3155 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2023-10-01T09:03:37,841 | ^~~~ 2023-10-01T09:03:37,843 src/ViennaRNA/snoop.c:3155:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:37,844 3155 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2023-10-01T09:03:37,844 | ^~~ 2023-10-01T09:03:38,936 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack.constprop’: 2023-10-01T09:03:38,938 src/ViennaRNA/snoop.c:2774:3: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:03:38,939 2774 | free(struc_loop); 2023-10-01T09:03:38,939 | ^~~~~~~~~~~~~~~~ 2023-10-01T09:03:38,940 src/ViennaRNA/snoop.c:2524:12: note: ‘struc_loop’ was declared here 2023-10-01T09:03:38,941 2524 | char *struc_loop; 2023-10-01T09:03:38,941 | ^~~~~~~~~~ 2023-10-01T09:03:39,531 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack.constprop’: 2023-10-01T09:03:39,532 src/ViennaRNA/snoop.c:1074:3: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:03:39,532 1074 | free(struc_loop); 2023-10-01T09:03:39,532 | ^~~~~~~~~~~~~~~~ 2023-10-01T09:03:39,533 src/ViennaRNA/snoop.c:736:10: note: ‘struc_loop’ was declared here 2023-10-01T09:03:39,533 736 | char *struc_loop; 2023-10-01T09:03:39,534 | ^~~~~~~~~~ 2023-10-01T09:03:43,408 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS’: 2023-10-01T09:03:43,411 src/ViennaRNA/snoop.c:3377:12: warning: ‘u’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:03:43,411 3377 | return mfe; 2023-10-01T09:03:43,412 | ^~~ 2023-10-01T09:03:43,414 src/ViennaRNA/snoop.c:3235:13: note: ‘u’ was declared here 2023-10-01T09:03:43,414 3235 | int u; 2023-10-01T09:03:43,415 | ^ 2023-10-01T09:03:43,417 src/ViennaRNA/snoop.c:3451:12: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:03:43,417 3451 | char *struc_loop; 2023-10-01T09:03:43,418 | ^~~~~~~~~~ 2023-10-01T09:03:44,505 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2023-10-01T09:03:44,507 src/ViennaRNA/snoop.c:2995:19: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:03:44,508 2995 | position_j[i] = min_j_colonne; 2023-10-01T09:03:44,508 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-10-01T09:03:44,510 src/ViennaRNA/snoop.c:2823:7: note: ‘min_j_colonne’ was declared here 2023-10-01T09:03:44,510 2823 | int min_j_colonne; 2023-10-01T09:03:44,511 | ^~~~~~~~~~~~~ 2023-10-01T09:03:45,244 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/special_const.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/special_const.o -fopenmp 2023-10-01T09:03:45,338 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/stringdist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/stringdist.o -fopenmp 2023-10-01T09:03:46,314 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/subopt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/subopt.o -fopenmp 2023-10-01T09:03:46,636 In file included from src/ViennaRNA/subopt.c:48: 2023-10-01T09:03:46,637 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-10-01T09:03:46,637 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,638 865 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:03:46,638 | ^ 2023-10-01T09:03:46,639 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-10-01T09:03:46,639 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,640 898 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:03:46,640 | ^ 2023-10-01T09:03:46,641 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-10-01T09:03:46,641 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,642 969 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,642 | ^ 2023-10-01T09:03:46,643 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-10-01T09:03:46,643 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,644 993 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,644 | ^ 2023-10-01T09:03:46,645 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-10-01T09:03:46,646 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,646 1121 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,647 | ^ 2023-10-01T09:03:46,648 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-10-01T09:03:46,648 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,649 1145 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,650 | ^ 2023-10-01T09:03:46,650 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-10-01T09:03:46,651 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,652 1292 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:03:46,652 | ^ 2023-10-01T09:03:46,653 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-10-01T09:03:46,654 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,654 1320 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:03:46,655 | ^ 2023-10-01T09:03:46,655 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-10-01T09:03:46,656 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,657 1348 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:03:46,657 | ^ 2023-10-01T09:03:46,658 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-10-01T09:03:46,659 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,659 1404 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,660 | ^ 2023-10-01T09:03:46,661 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-10-01T09:03:46,661 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,661 1426 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,662 | ^ 2023-10-01T09:03:46,662 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-10-01T09:03:46,663 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,663 1450 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,664 | ^ 2023-10-01T09:03:46,664 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-10-01T09:03:46,665 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,666 1596 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:03:46,666 | ^ 2023-10-01T09:03:46,667 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-10-01T09:03:46,667 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,668 1628 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:03:46,669 | ^ 2023-10-01T09:03:46,669 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-10-01T09:03:46,670 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,671 1677 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,672 | ^ 2023-10-01T09:03:46,672 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-10-01T09:03:46,673 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,674 1698 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,674 | ^ 2023-10-01T09:03:46,676 In file included from src/ViennaRNA/subopt.c:50: 2023-10-01T09:03:46,677 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-10-01T09:03:46,677 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,678 71 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,679 | ^ 2023-10-01T09:03:46,679 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-10-01T09:03:46,680 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,681 110 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,681 | ^ 2023-10-01T09:03:46,682 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-10-01T09:03:46,683 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,683 141 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,684 | ^ 2023-10-01T09:03:46,685 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-10-01T09:03:46,685 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,686 183 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,686 | ^ 2023-10-01T09:03:46,687 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-10-01T09:03:46,687 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,688 222 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,688 | ^ 2023-10-01T09:03:46,689 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-10-01T09:03:46,689 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,690 726 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,690 | ^ 2023-10-01T09:03:46,691 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-10-01T09:03:46,691 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:46,692 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-10-01T09:03:46,692 | ^~ 2023-10-01T09:03:46,693 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-10-01T09:03:46,693 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,694 780 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,694 | ^ 2023-10-01T09:03:46,695 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-10-01T09:03:46,696 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,696 821 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,697 | ^ 2023-10-01T09:03:46,701 In file included from src/ViennaRNA/subopt.c:51: 2023-10-01T09:03:46,702 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-10-01T09:03:46,703 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,703 76 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,704 | ^ 2023-10-01T09:03:46,705 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-10-01T09:03:46,705 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,706 95 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,706 | ^ 2023-10-01T09:03:46,707 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-10-01T09:03:46,708 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,709 124 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,710 | ^ 2023-10-01T09:03:46,710 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-10-01T09:03:46,711 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,712 155 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,712 | ^ 2023-10-01T09:03:46,713 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-10-01T09:03:46,713 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,714 328 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,714 | ^ 2023-10-01T09:03:46,715 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-10-01T09:03:46,715 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,716 397 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,716 | ^ 2023-10-01T09:03:46,716 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-10-01T09:03:46,717 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,717 530 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,718 | ^ 2023-10-01T09:03:46,719 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-10-01T09:03:46,719 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,720 663 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,721 | ^ 2023-10-01T09:03:46,721 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-10-01T09:03:46,722 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,723 802 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,723 | ^ 2023-10-01T09:03:46,724 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-10-01T09:03:46,725 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,726 849 | for (s = 0; s < data->n_seq; s++) { 2023-10-01T09:03:46,726 | ^ 2023-10-01T09:03:46,727 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-10-01T09:03:46,728 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,728 888 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,729 | ^ 2023-10-01T09:03:46,729 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-10-01T09:03:46,730 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,731 947 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,732 | ^ 2023-10-01T09:03:46,732 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-10-01T09:03:46,733 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,734 983 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,735 | ^ 2023-10-01T09:03:46,736 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-10-01T09:03:46,736 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,737 1020 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,737 | ^ 2023-10-01T09:03:46,738 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-10-01T09:03:46,739 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,739 1079 | for (s = 0; s < data->n_seq; s++) 2023-10-01T09:03:46,740 | ^ 2023-10-01T09:03:46,749 src/ViennaRNA/subopt.c: In function ‘vrna_subopt_cb’: 2023-10-01T09:03:46,749 src/ViennaRNA/subopt.c:519:29: warning: variable ‘ss’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:46,750 519 | unsigned int *so, *ss; 2023-10-01T09:03:46,750 | ^~ 2023-10-01T09:03:46,751 src/ViennaRNA/subopt.c:519:24: warning: variable ‘so’ set but not used [-Wunused-but-set-variable] 2023-10-01T09:03:46,751 519 | unsigned int *so, *ss; 2023-10-01T09:03:46,752 | ^~ 2023-10-01T09:03:46,787 src/ViennaRNA/subopt.c: In function ‘scan_fms3’: 2023-10-01T09:03:46,788 src/ViennaRNA/subopt.c:2475:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,789 2475 | s3 = ((i < length) && (sn[i] == sn[i + 1])) ? S1[i + 1] : -1; 2023-10-01T09:03:46,789 | ^ 2023-10-01T09:03:46,793 src/ViennaRNA/subopt.c:2557:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,794 2557 | s3 = ((i < length) && (sn[i] == sn[i + 1])) ? S1[i + 1] : -1; 2023-10-01T09:03:46,794 | ^ 2023-10-01T09:03:46,805 src/ViennaRNA/subopt.c: In function ‘repeat’: 2023-10-01T09:03:46,807 src/ViennaRNA/subopt.c:2924:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,808 2924 | if (se[sn[i]] > i) 2023-10-01T09:03:46,809 | ^ 2023-10-01T09:03:46,810 src/ViennaRNA/subopt.c:2927:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:46,811 2927 | if (j - 1 > se[sn[i]]) 2023-10-01T09:03:46,811 | ^ 2023-10-01T09:03:46,813 src/ViennaRNA/subopt.c:2944:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:46,814 2944 | if (i + 1 <= se[sn[nick]]) 2023-10-01T09:03:46,814 | ^~ 2023-10-01T09:03:46,816 src/ViennaRNA/subopt.c:2947:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:03:46,816 2947 | if (se[sn[nick]] + 1 <= j - 1) 2023-10-01T09:03:46,817 | ^~ 2023-10-01T09:03:46,914 src/ViennaRNA/subopt.c: At top level: 2023-10-01T09:03:46,914 src/ViennaRNA/subopt.c:883:1: warning: ‘print_stack’ defined but not used [-Wunused-function] 2023-10-01T09:03:46,915 883 | print_stack(LIST *list) 2023-10-01T09:03:46,916 | ^~~~~~~~~~~ 2023-10-01T09:03:56,734 In file included from src/ViennaRNA/subopt.c:54: 2023-10-01T09:03:56,735 In function ‘print_structure’, 2023-10-01T09:03:56,736 inlined from ‘vrna_subopt’ at src/ViennaRNA/subopt.c:450:7: 2023-10-01T09:03:56,736 src/ViennaRNA/color_output.inc:61:7: warning: ‘SeQ’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-01T09:03:56,737 61 | fprintf(fp, "%s\n", structure); 2023-10-01T09:03:56,737 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-01T09:03:56,738 src/ViennaRNA/subopt.c: In function ‘vrna_subopt’: 2023-10-01T09:03:56,738 src/ViennaRNA/subopt.c:435:14: note: ‘SeQ’ was declared here 2023-10-01T09:03:56,739 435 | char *SeQ, *energies = NULL; 2023-10-01T09:03:56,740 | ^~~ 2023-10-01T09:03:57,549 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/subopt_zuker.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/subopt_zuker.o -fopenmp 2023-10-01T09:03:57,723 src/ViennaRNA/subopt_zuker.c: In function ‘vrna_subopt_zuker’: 2023-10-01T09:03:57,724 src/ViennaRNA/subopt_zuker.c:256:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:57,725 256 | if (hc->up_int[l + 1] < u2) 2023-10-01T09:03:57,725 | ^ 2023-10-01T09:03:57,726 src/ViennaRNA/subopt_zuker.c:268:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:57,726 268 | if (hc->up_int[i + 1] < u1) 2023-10-01T09:03:57,727 | ^ 2023-10-01T09:03:57,728 src/ViennaRNA/subopt_zuker.c:302:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:57,728 302 | if ((hc->up_ml[i + 1] >= u) && 2023-10-01T09:03:57,729 | ^~ 2023-10-01T09:03:57,741 src/ViennaRNA/subopt_zuker.c: In function ‘backtrack’: 2023-10-01T09:03:57,741 src/ViennaRNA/subopt_zuker.c:788:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:57,742 788 | if (hc->up_int[i + 1] < u1) 2023-10-01T09:03:57,743 | ^ 2023-10-01T09:03:57,743 src/ViennaRNA/subopt_zuker.c:800:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:57,744 800 | if (hc->up_int[l + 1] < u2) 2023-10-01T09:03:57,745 | ^ 2023-10-01T09:03:57,746 src/ViennaRNA/subopt_zuker.c:857:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:57,747 857 | if (hc->up_ml[i + 1] < u1) 2023-10-01T09:03:57,747 | ^ 2023-10-01T09:03:57,749 src/ViennaRNA/subopt_zuker.c:898:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:03:57,750 898 | if ((hc->up_ml[i + 1] >= u1) && 2023-10-01T09:03:57,750 | ^~ 2023-10-01T09:04:00,071 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/treedist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/treedist.o -fopenmp 2023-10-01T09:04:00,214 src/ViennaRNA/treedist.c: In function ‘sprint_aligned_trees’: 2023-10-01T09:04:00,215 src/ViennaRNA/treedist.c:724:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:04:00,216 724 | for (k = 0; k < strlen(ll); k++) { 2023-10-01T09:04:00,216 | ^ 2023-10-01T09:04:00,217 src/ViennaRNA/treedist.c:745:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:04:00,217 745 | for (k = 0; k < strlen(ll); k++) { 2023-10-01T09:04:00,218 | ^ 2023-10-01T09:04:00,218 src/ViennaRNA/treedist.c:771:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:04:00,219 771 | for (k = 0; k < strlen(ll) - strlen(ll1); k++) 2023-10-01T09:04:00,219 | ^ 2023-10-01T09:04:00,220 src/ViennaRNA/treedist.c:775:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:04:00,220 775 | for (k = 0; k < strlen(ll1) - strlen(ll); k++) 2023-10-01T09:04:00,221 | ^ 2023-10-01T09:04:00,221 src/ViennaRNA/treedist.c:778:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:04:00,222 778 | for (k = 0; k < strlen(ll); k++) 2023-10-01T09:04:00,223 | ^ 2023-10-01T09:04:00,224 src/ViennaRNA/treedist.c:780:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-01T09:04:00,224 780 | for (k = 0; k < strlen(ll); k++) 2023-10-01T09:04:00,225 | ^ 2023-10-01T09:04:01,239 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/unstructured_domains.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/unstructured_domains.o -fopenmp 2023-10-01T09:04:01,451 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_motifs_centroid’: 2023-10-01T09:04:01,452 src/ViennaRNA/unstructured_domains.c:366:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:04:01,453 366 | for (m = 0; m < domains_up->motif_count; m++) { 2023-10-01T09:04:01,454 | ^ 2023-10-01T09:04:01,455 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_motifs_MEA’: 2023-10-01T09:04:01,456 src/ViennaRNA/unstructured_domains.c:435:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:04:01,456 435 | for (i = ptr->i; i <= ptr->j; i++) 2023-10-01T09:04:01,457 | ^~ 2023-10-01T09:04:01,460 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_get_motif_size_at’: 2023-10-01T09:04:01,460 src/ViennaRNA/unstructured_domains.c:679:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:04:01,461 679 | if ((i > 0) && (i <= vc->length)) { 2023-10-01T09:04:01,462 | ^~ 2023-10-01T09:04:01,463 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_get_motifs_at’: 2023-10-01T09:04:01,463 src/ViennaRNA/unstructured_domains.c:722:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:04:01,464 722 | if ((i > 0) && (i <= vc->length)) 2023-10-01T09:04:01,464 | ^~ 2023-10-01T09:04:01,465 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_detect_motifs’: 2023-10-01T09:04:01,465 src/ViennaRNA/unstructured_domains.c:748:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:04:01,466 748 | while (l < vc->length) { 2023-10-01T09:04:01,466 | ^ 2023-10-01T09:04:01,467 src/ViennaRNA/unstructured_domains.c:750:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:04:01,467 750 | while (l < vc->length) { 2023-10-01T09:04:01,468 | ^ 2023-10-01T09:04:01,468 src/ViennaRNA/unstructured_domains.c:757:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:04:01,469 757 | if (l < vc->length) { 2023-10-01T09:04:01,469 | ^ 2023-10-01T09:04:01,470 src/ViennaRNA/unstructured_domains.c:761:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:04:01,471 761 | if (l == vc->length) 2023-10-01T09:04:01,471 | ^~ 2023-10-01T09:04:01,475 src/ViennaRNA/unstructured_domains.c: In function ‘fill_MFE_matrix’: 2023-10-01T09:04:01,476 src/ViennaRNA/unstructured_domains.c:1122:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:04:01,476 1122 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-10-01T09:04:01,477 | ^ 2023-10-01T09:04:01,478 src/ViennaRNA/unstructured_domains.c:1138:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:04:01,478 1138 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-10-01T09:04:01,479 | ^ 2023-10-01T09:04:01,480 src/ViennaRNA/unstructured_domains.c:1140:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:04:01,480 1140 | if (u <= d) { 2023-10-01T09:04:01,481 | ^~ 2023-10-01T09:04:01,481 src/ViennaRNA/unstructured_domains.c:1147:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-01T09:04:01,482 1147 | if (u < d) 2023-10-01T09:04:01,483 | ^ 2023-10-01T09:04:01,483 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MFE_matrix’: 2023-10-01T09:04:01,484 src/ViennaRNA/unstructured_domains.c:1185:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:04:01,485 1185 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-10-01T09:04:01,485 | ^ 2023-10-01T09:04:01,486 src/ViennaRNA/unstructured_domains.c:1201:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:04:01,486 1201 | for (k = 0; k < domains_up->motif_count; k++) 2023-10-01T09:04:01,487 | ^ 2023-10-01T09:04:01,488 src/ViennaRNA/unstructured_domains.c:1230:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:04:01,488 1230 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-10-01T09:04:01,489 | ^ 2023-10-01T09:04:01,490 src/ViennaRNA/unstructured_domains.c:1240:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:04:01,490 1240 | for (k = 0; k < domains_up->motif_count; k++) 2023-10-01T09:04:01,491 | ^ 2023-10-01T09:04:01,491 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MFE_matrix_exhaustive’: 2023-10-01T09:04:01,492 src/ViennaRNA/unstructured_domains.c:1352:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:04:01,492 1352 | for (k = 0; k < domains_up->uniq_motif_count; k++) { 2023-10-01T09:04:01,493 | ^ 2023-10-01T09:04:01,493 src/ViennaRNA/unstructured_domains.c:1367:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:04:01,494 1367 | for (m = 0; m < domains_up->uniq_motif_count; m++) 2023-10-01T09:04:01,494 | ^ 2023-10-01T09:04:01,495 src/ViennaRNA/unstructured_domains.c:1394:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:04:01,495 1394 | for (m = 0; m < domains_up->uniq_motif_count; m++) 2023-10-01T09:04:01,495 | ^ 2023-10-01T09:04:01,496 src/ViennaRNA/unstructured_domains.c: In function ‘fill_MEA_matrix’: 2023-10-01T09:04:01,497 src/ViennaRNA/unstructured_domains.c:1451:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:04:01,497 1451 | for (m = 0; m < domains_up->motif_count; m++) { 2023-10-01T09:04:01,498 | ^ 2023-10-01T09:04:01,498 src/ViennaRNA/unstructured_domains.c:1466:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:04:01,499 1466 | for (m = 0; m < domains_up->motif_count; m++) { 2023-10-01T09:04:01,499 | ^ 2023-10-01T09:04:01,500 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MEA_matrix’: 2023-10-01T09:04:01,500 src/ViennaRNA/unstructured_domains.c:1522:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:04:01,501 1522 | for (m = 0; m < domains_up->motif_count; m++) { 2023-10-01T09:04:01,502 | ^ 2023-10-01T09:04:01,502 src/ViennaRNA/unstructured_domains.c: In function ‘add_ligand_motif’: 2023-10-01T09:04:01,503 src/ViennaRNA/unstructured_domains.c:1600:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-01T09:04:01,503 1600 | for (same_size = i = 0; i < ud->uniq_motif_count; i++) { 2023-10-01T09:04:01,504 | ^ 2023-10-01T09:04:04,204 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/utils/cpu.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/cpu.o -fopenmp 2023-10-01T09:04:04,372 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/utils/higher_order_functions.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/higher_order_functions.o -fopenmp 2023-10-01T09:04:04,646 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/utils/higher_order_functions_avx512.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/higher_order_functions_avx512.o -fopenmp -mavx512f 2023-10-01T09:04:04,662 arm-linux-gnueabihf-gcc: error: unrecognized command-line option ‘-mavx512f’ 2023-10-01T09:04:04,666 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-10-01T09:04:04,803 ERROR: [present-rich] Building wheel for viennarna (pyproject.toml) exited with 1 2023-10-01T09:04:04,825 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmp1ekx08vl[/] 2023-10-01T09:04:04,826 [bold magenta]cwd[/]: /tmp/pip-wheel-wmfg8ezs/viennarna_6ad0e30e1e774aedb4f8acc7424b91bb 2023-10-01T09:04:04,826 Building wheel for viennarna (pyproject.toml): finished with status 'error' 2023-10-01T09:04:04,830 ERROR: Failed building wheel for viennarna 2023-10-01T09:04:04,833 Failed to build viennarna 2023-10-01T09:04:04,835 ERROR: Failed to build one or more wheels 2023-10-01T09:04:04,837 Exception information: 2023-10-01T09:04:04,837 Traceback (most recent call last): 2023-10-01T09:04:04,837 File "/home/piwheels/.local/lib/python3.11/site-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-10-01T09:04:04,837 status = run_func(*args) 2023-10-01T09:04:04,837 ^^^^^^^^^^^^^^^ 2023-10-01T09:04:04,837 File "/home/piwheels/.local/lib/python3.11/site-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-10-01T09:04:04,837 return func(self, options, args) 2023-10-01T09:04:04,837 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-10-01T09:04:04,837 File "/home/piwheels/.local/lib/python3.11/site-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-10-01T09:04:04,837 raise CommandError("Failed to build one or more wheels") 2023-10-01T09:04:04,837 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-10-01T09:04:04,843 Removed build tracker: '/tmp/pip-build-tracker-9kaevvib'