2023-10-03T17:16:17,380 Created temporary directory: /tmp/pip-build-tracker-yxw2lrf9 2023-10-03T17:16:17,382 Initialized build tracking at /tmp/pip-build-tracker-yxw2lrf9 2023-10-03T17:16:17,382 Created build tracker: /tmp/pip-build-tracker-yxw2lrf9 2023-10-03T17:16:17,382 Entered build tracker: /tmp/pip-build-tracker-yxw2lrf9 2023-10-03T17:16:17,383 Created temporary directory: /tmp/pip-wheel-0f4d74gb 2023-10-03T17:16:17,387 Created temporary directory: /tmp/pip-ephem-wheel-cache-a12qkzp6 2023-10-03T17:16:17,413 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-03T17:16:17,417 2 location(s) to search for versions of splam: 2023-10-03T17:16:17,417 * https://pypi.org/simple/splam/ 2023-10-03T17:16:17,417 * https://www.piwheels.org/simple/splam/ 2023-10-03T17:16:17,417 Fetching project page and analyzing links: https://pypi.org/simple/splam/ 2023-10-03T17:16:17,418 Getting page https://pypi.org/simple/splam/ 2023-10-03T17:16:17,419 Found index url https://pypi.org/simple/ 2023-10-03T17:16:17,471 Fetched page https://pypi.org/simple/splam/ as application/vnd.pypi.simple.v1+json 2023-10-03T17:16:17,481 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/57/2a/d68f86c46b3152c9072975cb1c8b3f2345e0f71cea763c0635ca8c5e0261/splam-0.2.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,482 Found link https://files.pythonhosted.org/packages/ba/e8/4cf0f802bf26fd6587829e3688109caef6d26e13d19ce003ac876212da15/splam-0.2.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.9 2023-10-03T17:16:17,482 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f0/97/c31f00ac8a786213c4a50dd993cd04e61af08766e9559f244fb9c3929178/splam-0.2.10-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,483 Found link https://files.pythonhosted.org/packages/72/d1/671663c98d0cfca3218b880633390493fcebf9972175a7c4d2752259f2ea/splam-0.2.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.10 2023-10-03T17:16:17,483 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/ad/36/84239a43f206dfbfe07c6e6f76ef8c54235439210640aeacc8cb20e24c2e/splam-0.2.11-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,484 Found link https://files.pythonhosted.org/packages/c7/b3/96a175c203358d735694d7d5fd9261ef8683af968e14e473e823d159cee1/splam-0.2.11.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.11 2023-10-03T17:16:17,484 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/a5/f5/e15307ccb65ec9c225b7f1af65ee2c8880ba8eb049d386f4c9da459b2e1e/splam-0.2.12-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,484 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ba/88/6cac004352d4aa92aabdfd31f9b96919f8044db486185d3fd3c924583bc8/splam-0.2.12-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,485 Found link https://files.pythonhosted.org/packages/32/fa/a9795e9df88e8ea6c6788ae171702d5f9d8ce2c3472408ab0784f08a7b91/splam-0.2.12.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.12 2023-10-03T17:16:17,485 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/59/88/fefee12f8e44d6879a0970d37b42fc4dc54010f78b1ee91f6db366c1f125/splam-0.2.13-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,485 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/64/13/d601e5e99b31891d95bc0a6201367dab38f12faaadcb6aedbee7725dca71/splam-0.2.13-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,486 Found link https://files.pythonhosted.org/packages/cf/fb/2e5425fcdb2e5fd7ff963b174b1582816154fd0373bbc96edf4e851d272d/splam-0.2.13.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.13 2023-10-03T17:16:17,486 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/da/65/a129eabb1d673da72f1d7dfd3495c01c89da78569b7f2dba2c746a0c0f29/splam-0.2.14-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,486 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/79/2fdaa68664126c8c71bac526b41e1e35e4195879170c8129a8d482f3ae7b/splam-0.2.14-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,487 Found link https://files.pythonhosted.org/packages/9b/3f/d7dd2411528494ed5062665c3b5d5d7d8422fd11fa181d5fc01ea67d7dbf/splam-0.2.14.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.14 2023-10-03T17:16:17,487 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f4/9a/e7d1f5f16d77888ac5d0935e180fa2210e875ff487909519d6871e1301da/splam-0.2.15-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,487 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/40/b6/eda61824794c736e52c09353dfbbd70eea4d0f0ab31896f3688d269ab64b/splam-0.2.15-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,488 Found link https://files.pythonhosted.org/packages/29/d0/5e9ef93e49636308cb56b70a06c8932321cb60a4aae678d8bb1d213b52b5/splam-0.2.15.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.15 2023-10-03T17:16:17,488 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e5/17/caa4b05a6370f2d197ec174fe1968f63acc357db5923efca0860b3a5e141/splam-0.2.16-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,488 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fe/a5/d90a02293e34acf5515a8f435ae90afeb823336d6232a7bedf01436a00f9/splam-0.2.17-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,489 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ef/af/7db5183d8c36a250bb4547c58610624b4d1067ea0eb119addc8986ce6ec1/splam-0.2.17-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,489 Found link https://files.pythonhosted.org/packages/26/3a/0e89dd56f9617853061d7c4ed6a220a414a01bba9f0005e54da52a1ad22e/splam-0.2.17.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.17 2023-10-03T17:16:17,489 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/bd/50/ae02dcd9e7c53df59acc9ad83ac389a886e55254cd6953614d43f0eaac60/splam-0.3.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,490 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/78/0b/8b0b45b16922007f88c9b81357cde8b84f9ea45327104b00724024e722ec/splam-0.3.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,490 Found link https://files.pythonhosted.org/packages/e5/c7/4bf13e849aefc7cfdd94f142e6267e4937c61d7fb9fbfe1119953f6a5e72/splam-0.3.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.3.0 2023-10-03T17:16:17,490 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/55/d8079e937d1f568ac9358237871b9d4d6d28abf1e8e8ec2b8073db7b166a/splam-0.3.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,491 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6d/9f/5e7c396bd04da9866f89f51574bd3fec1e691b279116e4d4de92b75b6538/splam-1.0.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,491 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/56/ae/c9e443ec09db88b2b2aaa18ebc6b12751b321d731ce21964ee188067bb0f/splam-1.0.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,491 Found link https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.0 2023-10-03T17:16:17,492 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/43/45/27c64605655d3127bf6155bc060f98fb565e631553e4f0e0a53d3922ebf3/splam-1.0.1-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,492 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/4d/0b5427df4d5d74ba5a98e28805b45fee4b15d2cad1e9aa91069306c29da7/splam-1.0.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,492 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/da/e1/11ee65eb50a2f628f92249d84cd72eddbc1386afbc82c7410fceb627d995/splam-1.0.1-py3.9-linux-x86_64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,492 Found link https://files.pythonhosted.org/packages/ad/3c/5a2fcc44ca9afa6bc1cb4fe6a30ba6495f9c1359c6b610536cb6c7998ca1/splam-1.0.1.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.1 2023-10-03T17:16:17,493 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6a/e7/e7827b0d637f018ef8d18ea969985ce37ffa520fd1bf6d0e8d43d72b749e/splam-1.0.2-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,493 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f2/ba/94da0985b6db88ba663b4e56a395d74d04283a79d0fdf476763251f5679f/splam-1.0.2-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,493 Found link https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.2 2023-10-03T17:16:17,494 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/30/c9/23c10c8ee217996cc58e6f16ffc732657d1cb3011f7cbc41ebb51927bbbb/splam-1.0.3-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,494 Found link https://files.pythonhosted.org/packages/b3/80/1ff08f5e516c2ce233a75e61e8ce3dacc34b00bd2cae4fae0d01b0d758e9/splam-1.0.3.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.3 2023-10-03T17:16:17,494 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/70/bd/3aacba5a589a5a8d4688781f1376a822b1df05526355738a85f10a6f0c86/splam-1.0.4-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,495 Found link https://files.pythonhosted.org/packages/b3/ef/1c49f24a396880a7ac6773041c067d1418ca533df5018de37f1fb49f512a/splam-1.0.4.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.4 2023-10-03T17:16:17,495 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/54/7e/ce14252ed5cbc26ad69ffe8ec6909d91f2bed9f97749fb5ba0f43a935479/splam-1.0.5-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,496 Found link https://files.pythonhosted.org/packages/5f/dd/ac054961585d4e5d71c889e8840dc096a847ac38b04295f38dbe524718e5/splam-1.0.5.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.5 2023-10-03T17:16:17,496 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f7/1e/02d35d67ba3f32f629f40824705e8ef82b6a80914fef3ffa59bcea67c965/splam-1.0.6-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,497 Found link https://files.pythonhosted.org/packages/b2/7d/e8f8b51f071b0bc4e2a1a0cc31db50c9acecb68271cd5bd5e113c7442fed/splam-1.0.6.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.6 2023-10-03T17:16:17,497 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/1d/57/3fbf056633d3332ab938f761553161346599e27c5f5c66f605c08b4fb2b3/splam-1.0.7-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,497 Found link https://files.pythonhosted.org/packages/a5/b6/ffa6c7c753ce7d9989d0e3adcb5310ecf29429dce73ffe51f2b63434c9fc/splam-1.0.7.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.7 2023-10-03T17:16:17,498 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/35/fa/76bf21536e4f60a1caae0132889ab74457d9c75a9476c3d0ec7b578870af/splam-1.0.8-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,498 Found link https://files.pythonhosted.org/packages/a5/ad/6d3495d79895726b6df06f3cd667006e5316fa3235e6919b841057f6e666/splam-1.0.8.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.8 2023-10-03T17:16:17,498 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fc/24/c13538db2c354993494537d33e4138e39d65e83f947f55d6f9d599e12a63/splam-1.0.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,499 Found link https://files.pythonhosted.org/packages/4d/2c/303bafdffb18df8357ea5c7f2bc00f9e4afd9667b9f10b411091c3adc293/splam-1.0.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.9 2023-10-03T17:16:17,499 Fetching project page and analyzing links: https://www.piwheels.org/simple/splam/ 2023-10-03T17:16:17,500 Getting page https://www.piwheels.org/simple/splam/ 2023-10-03T17:16:17,501 Found index url https://www.piwheels.org/simple/ 2023-10-03T17:16:17,601 Fetched page https://www.piwheels.org/simple/splam/ as text/html 2023-10-03T17:16:17,625 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.9-cp311-cp311-linux_armv7l.whl#sha256=4f33f01300dc6b46c228d430b148c0577d19b3f9e896bdeb9b4c43e441dbb6bb (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,626 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.9-cp311-cp311-linux_armv6l.whl#sha256=4f33f01300dc6b46c228d430b148c0577d19b3f9e896bdeb9b4c43e441dbb6bb (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,626 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.8-cp37-cp37m-linux_armv7l.whl#sha256=87f7d7cd6cf908bbc7dd9021e0997b35b120395dd134da838f322e3613332790 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,626 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.8-cp37-cp37m-linux_armv6l.whl#sha256=87f7d7cd6cf908bbc7dd9021e0997b35b120395dd134da838f322e3613332790 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,627 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.8-cp311-cp311-linux_armv7l.whl#sha256=92c821abb80e7e7f7d5533c45323e8318dd814e889ce11dce05f867bd3e4dde6 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,627 Skipping link: No binaries permitted for splam: 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https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv7l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,638 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv6l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,639 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv7l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,639 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv6l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,639 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv7l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,640 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv6l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,640 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv7l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,640 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv6l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,640 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv7l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,641 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv6l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,641 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv7l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,641 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv6l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-03T17:16:17,642 Skipping link: not a file: https://www.piwheels.org/simple/splam/ 2023-10-03T17:16:17,642 Skipping link: not a file: https://pypi.org/simple/splam/ 2023-10-03T17:16:17,671 Given no hashes to check 1 links for project 'splam': discarding no candidates 2023-10-03T17:16:17,696 Collecting splam==1.0.8 2023-10-03T17:16:17,698 Created temporary directory: /tmp/pip-unpack-qggis4id 2023-10-03T17:16:17,744 Downloading splam-1.0.8.tar.gz (41.0 MB) 2023-10-03T17:16:25,310 Added splam==1.0.8 from https://files.pythonhosted.org/packages/a5/ad/6d3495d79895726b6df06f3cd667006e5316fa3235e6919b841057f6e666/splam-1.0.8.tar.gz to build tracker '/tmp/pip-build-tracker-yxw2lrf9' 2023-10-03T17:16:25,313 Running setup.py (path:/tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/setup.py) egg_info for package splam 2023-10-03T17:16:25,313 Created temporary directory: /tmp/pip-pip-egg-info-vam8o8t1 2023-10-03T17:16:25,314 Preparing metadata (setup.py): started 2023-10-03T17:16:25,315 Running command python setup.py egg_info 2023-10-03T17:16:26,399 running egg_info 2023-10-03T17:16:26,400 creating /tmp/pip-pip-egg-info-vam8o8t1/splam.egg-info 2023-10-03T17:16:26,423 writing /tmp/pip-pip-egg-info-vam8o8t1/splam.egg-info/PKG-INFO 2023-10-03T17:16:26,428 writing dependency_links to /tmp/pip-pip-egg-info-vam8o8t1/splam.egg-info/dependency_links.txt 2023-10-03T17:16:26,430 writing entry points to /tmp/pip-pip-egg-info-vam8o8t1/splam.egg-info/entry_points.txt 2023-10-03T17:16:26,432 writing requirements to /tmp/pip-pip-egg-info-vam8o8t1/splam.egg-info/requires.txt 2023-10-03T17:16:26,433 writing top-level names to /tmp/pip-pip-egg-info-vam8o8t1/splam.egg-info/top_level.txt 2023-10-03T17:16:26,434 writing manifest file '/tmp/pip-pip-egg-info-vam8o8t1/splam.egg-info/SOURCES.txt' 2023-10-03T17:16:26,511 reading manifest file '/tmp/pip-pip-egg-info-vam8o8t1/splam.egg-info/SOURCES.txt' 2023-10-03T17:16:26,512 reading manifest template 'MANIFEST.in' 2023-10-03T17:16:26,862 adding license file 'LICENSE' 2023-10-03T17:16:26,915 writing manifest file '/tmp/pip-pip-egg-info-vam8o8t1/splam.egg-info/SOURCES.txt' 2023-10-03T17:16:27,006 Preparing metadata (setup.py): finished with status 'done' 2023-10-03T17:16:27,011 Source in /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92 has version 1.0.8, which satisfies requirement splam==1.0.8 from https://files.pythonhosted.org/packages/a5/ad/6d3495d79895726b6df06f3cd667006e5316fa3235e6919b841057f6e666/splam-1.0.8.tar.gz 2023-10-03T17:16:27,012 Removed splam==1.0.8 from https://files.pythonhosted.org/packages/a5/ad/6d3495d79895726b6df06f3cd667006e5316fa3235e6919b841057f6e666/splam-1.0.8.tar.gz from build tracker '/tmp/pip-build-tracker-yxw2lrf9' 2023-10-03T17:16:27,019 Created temporary directory: /tmp/pip-unpack-60zkbe52 2023-10-03T17:16:27,020 Created temporary directory: /tmp/pip-unpack-zem3frl2 2023-10-03T17:16:27,029 Building wheels for collected packages: splam 2023-10-03T17:16:27,033 Created temporary directory: /tmp/pip-wheel-5a_o3_tz 2023-10-03T17:16:27,033 Building wheel for splam (setup.py): started 2023-10-03T17:16:27,034 Destination directory: /tmp/pip-wheel-5a_o3_tz 2023-10-03T17:16:27,034 Running command python setup.py bdist_wheel 2023-10-03T17:16:28,014 running bdist_wheel 2023-10-03T17:16:28,083 running build 2023-10-03T17:16:28,084 running build_py 2023-10-03T17:16:28,109 creating build 2023-10-03T17:16:28,110 creating build/lib.linux-armv7l-cpython-39 2023-10-03T17:16:28,111 creating build/lib.linux-armv7l-cpython-39/splam 2023-10-03T17:16:28,112 copying splam/__init__.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-03T17:16:28,114 copying splam/header.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-03T17:16:28,115 copying splam/prediction.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-03T17:16:28,118 copying splam/config.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-03T17:16:28,119 copying splam/clean_gff.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-03T17:16:28,121 copying splam/parse.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-03T17:16:28,123 copying splam/extract_gff.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-03T17:16:28,125 copying splam/chr_size.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-03T17:16:28,128 copying splam/SPLAM.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-03T17:16:28,130 copying splam/main.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-03T17:16:28,133 running build_ext 2023-10-03T17:16:28,469 -- The C compiler identification is GNU 10.2.1 2023-10-03T17:16:28,824 -- The CXX compiler identification is GNU 10.2.1 2023-10-03T17:16:28,869 -- Detecting C compiler ABI info 2023-10-03T17:16:29,221 -- Detecting C compiler ABI info - done 2023-10-03T17:16:29,279 -- Check for working C compiler: /usr/bin/cc - skipped 2023-10-03T17:16:29,280 -- Detecting C compile features 2023-10-03T17:16:29,282 -- Detecting C compile features - done 2023-10-03T17:16:29,306 -- Detecting CXX compiler ABI info 2023-10-03T17:16:29,729 -- Detecting CXX compiler ABI info - done 2023-10-03T17:16:29,789 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-10-03T17:16:29,790 -- Detecting CXX compile features 2023-10-03T17:16:29,794 -- Detecting CXX compile features - done 2023-10-03T17:16:29,831 -- pybind11 v2.11.0 dev1 2023-10-03T17:16:29,914 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3.6") 2023-10-03T17:16:30,422 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so 2023-10-03T17:16:30,429 -- Performing Test HAS_FLTO 2023-10-03T17:16:31,019 -- Performing Test HAS_FLTO - Success 2023-10-03T17:16:31,086 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 2023-10-03T17:16:31,088 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/include/htslib 2023-10-03T17:16:31,088 LIBRARY_OUTPUT_DIRECTORY: 2023-10-03T17:16:31,237 EXAMPLE_VERSION_INFO: 1.0.8 2023-10-03T17:16:31,239 -- Configuring done 2023-10-03T17:16:31,319 -- Generating done 2023-10-03T17:16:31,330 -- Build files have been written to: /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/build/temp.linux-armv7l-cpython-39/splam_extract 2023-10-03T17:16:31,530 Scanning dependencies of target htslib 2023-10-03T17:16:31,578 [ 2%] Creating directories for 'htslib' 2023-10-03T17:16:31,933 [ 5%] No download step for 'htslib' 2023-10-03T17:16:32,045 [ 8%] No update step for 'htslib' 2023-10-03T17:16:32,157 [ 11%] No patch step for 'htslib' 2023-10-03T17:16:32,266 [ 14%] Performing configure step for 'htslib' 2023-10-03T17:16:38,898 checking for gcc... gcc 2023-10-03T17:16:39,227 checking whether the C compiler works... yes 2023-10-03T17:16:39,228 checking for C compiler default output file name... a.out 2023-10-03T17:16:39,383 checking for suffix of executables... 2023-10-03T17:16:39,558 checking whether we are cross compiling... no 2023-10-03T17:16:39,642 checking for suffix of object files... o 2023-10-03T17:16:39,717 checking whether we are using the GNU C compiler... yes 2023-10-03T17:16:39,792 checking whether gcc accepts -g... yes 2023-10-03T17:16:39,946 checking for gcc option to accept ISO C89... none needed 2023-10-03T17:16:39,948 checking for ranlib... ranlib 2023-10-03T17:16:39,957 checking for grep that handles long lines and -e... /usr/bin/grep 2023-10-03T17:16:40,036 checking for C compiler warning flags... -Wall 2023-10-03T17:16:40,144 checking how to run the C preprocessor... gcc -E 2023-10-03T17:16:40,250 checking for egrep... /usr/bin/grep -E 2023-10-03T17:16:40,696 checking for ANSI C header files... yes 2023-10-03T17:16:40,856 checking for sys/types.h... yes 2023-10-03T17:16:40,987 checking for sys/stat.h... yes 2023-10-03T17:16:41,118 checking for stdlib.h... yes 2023-10-03T17:16:41,254 checking for string.h... yes 2023-10-03T17:16:41,392 checking for memory.h... yes 2023-10-03T17:16:41,528 checking for strings.h... yes 2023-10-03T17:16:41,701 checking for inttypes.h... yes 2023-10-03T17:16:41,846 checking for stdint.h... yes 2023-10-03T17:16:41,995 checking for unistd.h... yes 2023-10-03T17:16:42,158 checking whether _XOPEN_SOURCE is declared... no 2023-10-03T17:16:42,326 checking C compiler flags needed for ssse3... none 2023-10-03T17:16:42,546 checking C compiler flags needed for popcnt... none 2023-10-03T17:16:42,720 checking C compiler flags needed for sse4.1... none 2023-10-03T17:16:42,884 checking C compiler flags needed for avx2... none 2023-10-03T17:16:43,049 checking C compiler flags needed for avx512f... none 2023-10-03T17:16:43,052 checking for pkg-config... /usr/bin/pkg-config 2023-10-03T17:16:43,058 checking pkg-config is at least version 0.9.0... yes 2023-10-03T17:16:43,060 checking for special C compiler options needed for large files... no 2023-10-03T17:16:43,232 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-10-03T17:16:43,247 checking shared library type for unknown-Linux... plain .so 2023-10-03T17:16:43,468 checking whether the linker supports versioned symbols... yes 2023-10-03T17:16:43,643 checking whether the compiler accepts -fvisibility=hidden... yes 2023-10-03T17:16:43,655 checking for stdlib.h... (cached) yes 2023-10-03T17:16:43,679 checking for unistd.h... (cached) yes 2023-10-03T17:16:43,841 checking for sys/param.h... yes 2023-10-03T17:16:44,031 checking for getpagesize... yes 2023-10-03T17:16:44,372 checking for working mmap... yes 2023-10-03T17:16:44,562 checking for gmtime_r... yes 2023-10-03T17:16:44,765 checking for fsync... yes 2023-10-03T17:16:44,961 checking for drand48... yes 2023-10-03T17:16:45,209 checking for srand48_deterministic... no 2023-10-03T17:16:45,366 checking whether fdatasync is declared... yes 2023-10-03T17:16:45,542 checking for fdatasync... yes 2023-10-03T17:16:45,981 checking for library containing log... -lm 2023-10-03T17:16:46,082 checking for zlib.h... yes 2023-10-03T17:16:46,256 checking for inflate in -lz... yes 2023-10-03T17:16:46,436 checking for library containing recv... none required 2023-10-03T17:16:46,523 checking for bzlib.h... yes 2023-10-03T17:16:46,731 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-10-03T17:16:46,742 checking whether htscodecs files are present... yes 2023-10-03T17:16:46,744 configure: WARNING: GCS support not enabled: requires libcurl support 2023-10-03T17:16:46,744 configure: WARNING: S3 support not enabled: requires libcurl support 2023-10-03T17:16:46,923 checking for library containing regcomp... none required 2023-10-03T17:16:46,993 configure: creating ./config.status 2023-10-03T17:16:47,318 config.status: creating config.mk 2023-10-03T17:16:47,360 config.status: creating htslib.pc.tmp 2023-10-03T17:16:47,408 config.status: creating config.h 2023-10-03T17:16:47,450 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-10-03T17:16:47,665 [ 17%] Performing build step for 'htslib' 2023-10-03T17:16:51,106 Updating htscodecs/htscodecs/version.h : #define HTSCODECS_VERSION_TEXT "1.5.1" 2023-10-03T17:17:46,226 [ 20%] No install step for 'htslib' 2023-10-03T17:17:46,345 [ 22%] Completed 'htslib' 2023-10-03T17:17:46,505 [ 22%] Built target htslib 2023-10-03T17:17:46,763 Scanning dependencies of target splam_clean 2023-10-03T17:17:46,820 [ 25%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-10-03T17:17:52,061 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-10-03T17:17:52,062 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,062 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-10-03T17:17:52,062 | ^~~~~~~~~~ 2023-10-03T17:17:52,062 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,063 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-10-03T17:17:52,063 | ^~~~~~ 2023-10-03T17:17:52,063 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,063 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-10-03T17:17:52,063 | ^~~~ 2023-10-03T17:17:52,063 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,063 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-10-03T17:17:52,064 | ^~~~ 2023-10-03T17:17:52,064 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,064 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-10-03T17:17:52,064 | ^~~~~~~~~~ 2023-10-03T17:17:52,064 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,064 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-10-03T17:17:52,065 | ^~~~~~ 2023-10-03T17:17:52,065 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,065 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-10-03T17:17:52,065 | ^~~~ 2023-10-03T17:17:52,065 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,065 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-10-03T17:17:52,065 | ^~~~ 2023-10-03T17:17:52,066 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,066 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-03T17:17:52,066 | ^~~~~~~~~~ 2023-10-03T17:17:52,066 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,066 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-03T17:17:52,066 | ^~~~~~~ 2023-10-03T17:17:52,066 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,066 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-03T17:17:52,067 | ^~~~ 2023-10-03T17:17:52,067 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,067 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-03T17:17:52,067 | ^~~~ 2023-10-03T17:17:52,067 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,067 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-03T17:17:52,067 | ^~~~ 2023-10-03T17:17:52,067 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,068 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-03T17:17:52,068 | ^~~~~~~~~~ 2023-10-03T17:17:52,068 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,068 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-03T17:17:52,068 | ^~~~~~~ 2023-10-03T17:17:52,068 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,069 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-03T17:17:52,069 | ^~~~ 2023-10-03T17:17:52,069 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,069 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-03T17:17:52,069 | ^~~~ 2023-10-03T17:17:52,069 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:17:52,070 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-03T17:17:52,070 | ^~~~ 2023-10-03T17:17:57,072 [ 28%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-10-03T17:18:05,052 [ 31%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-10-03T17:18:05,525 [ 34%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-10-03T17:18:06,060 [ 37%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-10-03T17:18:06,362 [ 40%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-10-03T17:18:08,122 [ 42%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-10-03T17:18:10,788 [ 45%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-10-03T17:18:14,736 [ 48%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-10-03T17:18:19,277 [ 51%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-10-03T17:18:23,398 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-10-03T17:18:27,407 [ 57%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-10-03T17:18:30,903 [ 60%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-10-03T17:18:33,094 [ 62%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-10-03T17:18:34,167 [ 65%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-10-03T17:18:34,943 [ 68%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-10-03T17:18:35,892 [ 71%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so 2023-10-03T17:18:56,817 [ 71%] Built target splam_clean 2023-10-03T17:18:56,960 Scanning dependencies of target splam_extract 2023-10-03T17:18:57,012 [ 74%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-10-03T17:19:07,106 [ 77%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-10-03T17:19:11,090 [ 80%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-10-03T17:19:13,776 [ 82%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-10-03T17:19:17,790 [ 85%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-10-03T17:19:21,268 [ 88%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-10-03T17:19:23,435 [ 91%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-10-03T17:19:24,525 [ 94%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-10-03T17:19:25,300 [ 97%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-10-03T17:19:26,237 [100%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so 2023-10-03T17:19:40,285 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-10-03T17:19:40,285 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/include/gclib/GVec.hh:107:14: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-10-03T17:19:40,286 107 | fArray=new OBJ[NewCapacity]; 2023-10-03T17:19:40,286 | ^ 2023-10-03T17:19:40,286 /usr/include/c++/10/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-10-03T17:19:40,286 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-10-03T17:19:40,286 | ^ 2023-10-03T17:19:48,684 [100%] Built target splam_extract 2023-10-03T17:19:49,052 -- The C compiler identification is GNU 10.2.1 2023-10-03T17:19:49,367 -- The CXX compiler identification is GNU 10.2.1 2023-10-03T17:19:49,411 -- Detecting C compiler ABI info 2023-10-03T17:19:49,781 -- Detecting C compiler ABI info - done 2023-10-03T17:19:49,838 -- Check for working C compiler: /usr/bin/cc - skipped 2023-10-03T17:19:49,839 -- Detecting C compile features 2023-10-03T17:19:49,841 -- Detecting C compile features - done 2023-10-03T17:19:49,864 -- Detecting CXX compiler ABI info 2023-10-03T17:19:50,250 -- Detecting CXX compiler ABI info - done 2023-10-03T17:19:50,320 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-10-03T17:19:50,322 -- Detecting CXX compile features 2023-10-03T17:19:50,326 -- Detecting CXX compile features - done 2023-10-03T17:19:50,365 -- pybind11 v2.11.0 dev1 2023-10-03T17:19:50,436 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3.6") 2023-10-03T17:19:50,935 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so 2023-10-03T17:19:50,942 -- Performing Test HAS_FLTO 2023-10-03T17:19:51,514 -- Performing Test HAS_FLTO - Success 2023-10-03T17:19:51,553 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 2023-10-03T17:19:51,554 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/include/htslib 2023-10-03T17:19:51,555 LIBRARY_OUTPUT_DIRECTORY: 2023-10-03T17:19:51,689 EXAMPLE_VERSION_INFO: 1.0.8 2023-10-03T17:19:51,690 -- Configuring done 2023-10-03T17:19:51,766 -- Generating done 2023-10-03T17:19:51,777 -- Build files have been written to: /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/build/temp.linux-armv7l-cpython-39/splam_clean 2023-10-03T17:19:51,976 Scanning dependencies of target htslib 2023-10-03T17:19:52,023 [ 2%] Creating directories for 'htslib' 2023-10-03T17:19:52,350 [ 5%] No download step for 'htslib' 2023-10-03T17:19:52,462 [ 8%] No update step for 'htslib' 2023-10-03T17:19:52,610 [ 11%] No patch step for 'htslib' 2023-10-03T17:19:52,721 [ 14%] Performing configure step for 'htslib' 2023-10-03T17:19:57,486 checking for gcc... gcc 2023-10-03T17:19:57,803 checking whether the C compiler works... yes 2023-10-03T17:19:57,804 checking for C compiler default output file name... a.out 2023-10-03T17:19:57,965 checking for suffix of executables... 2023-10-03T17:19:58,138 checking whether we are cross compiling... no 2023-10-03T17:19:58,223 checking for suffix of object files... o 2023-10-03T17:19:58,297 checking whether we are using the GNU C compiler... yes 2023-10-03T17:19:58,374 checking whether gcc accepts -g... yes 2023-10-03T17:19:58,527 checking for gcc option to accept ISO C89... none needed 2023-10-03T17:19:58,529 checking for ranlib... ranlib 2023-10-03T17:19:58,537 checking for grep that handles long lines and -e... /usr/bin/grep 2023-10-03T17:19:58,615 checking for C compiler warning flags... -Wall 2023-10-03T17:19:58,726 checking how to run the C preprocessor... gcc -E 2023-10-03T17:19:58,832 checking for egrep... /usr/bin/grep -E 2023-10-03T17:19:59,288 checking for ANSI C header files... yes 2023-10-03T17:19:59,414 checking for sys/types.h... yes 2023-10-03T17:19:59,545 checking for sys/stat.h... yes 2023-10-03T17:19:59,675 checking for stdlib.h... yes 2023-10-03T17:19:59,811 checking for string.h... yes 2023-10-03T17:19:59,948 checking for memory.h... yes 2023-10-03T17:20:00,113 checking for strings.h... yes 2023-10-03T17:20:00,292 checking for inttypes.h... yes 2023-10-03T17:20:00,436 checking for stdint.h... yes 2023-10-03T17:20:00,584 checking for unistd.h... yes 2023-10-03T17:20:00,747 checking whether _XOPEN_SOURCE is declared... no 2023-10-03T17:20:00,911 checking C compiler flags needed for ssse3... none 2023-10-03T17:20:01,112 checking C compiler flags needed for popcnt... none 2023-10-03T17:20:01,277 checking C compiler flags needed for sse4.1... none 2023-10-03T17:20:01,443 checking C compiler flags needed for avx2... none 2023-10-03T17:20:01,612 checking C compiler flags needed for avx512f... none 2023-10-03T17:20:01,615 checking for pkg-config... /usr/bin/pkg-config 2023-10-03T17:20:01,621 checking pkg-config is at least version 0.9.0... yes 2023-10-03T17:20:01,623 checking for special C compiler options needed for large files... no 2023-10-03T17:20:01,829 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-10-03T17:20:01,854 checking shared library type for unknown-Linux... plain .so 2023-10-03T17:20:02,022 checking whether the linker supports versioned symbols... yes 2023-10-03T17:20:02,188 checking whether the compiler accepts -fvisibility=hidden... yes 2023-10-03T17:20:02,201 checking for stdlib.h... (cached) yes 2023-10-03T17:20:02,224 checking for unistd.h... (cached) yes 2023-10-03T17:20:02,385 checking for sys/param.h... yes 2023-10-03T17:20:02,583 checking for getpagesize... yes 2023-10-03T17:20:02,919 checking for working mmap... yes 2023-10-03T17:20:03,108 checking for gmtime_r... yes 2023-10-03T17:20:03,307 checking for fsync... yes 2023-10-03T17:20:03,540 checking for drand48... yes 2023-10-03T17:20:03,759 checking for srand48_deterministic... no 2023-10-03T17:20:03,915 checking whether fdatasync is declared... yes 2023-10-03T17:20:04,091 checking for fdatasync... yes 2023-10-03T17:20:04,513 checking for library containing log... -lm 2023-10-03T17:20:04,612 checking for zlib.h... yes 2023-10-03T17:20:04,784 checking for inflate in -lz... yes 2023-10-03T17:20:04,963 checking for library containing recv... none required 2023-10-03T17:20:05,071 checking for bzlib.h... yes 2023-10-03T17:20:05,284 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-10-03T17:20:05,295 checking whether htscodecs files are present... yes 2023-10-03T17:20:05,297 configure: WARNING: GCS support not enabled: requires libcurl support 2023-10-03T17:20:05,297 configure: WARNING: S3 support not enabled: requires libcurl support 2023-10-03T17:20:05,474 checking for library containing regcomp... none required 2023-10-03T17:20:05,537 configure: creating ./config.status 2023-10-03T17:20:05,844 config.status: creating config.mk 2023-10-03T17:20:05,887 config.status: creating htslib.pc.tmp 2023-10-03T17:20:05,950 config.status: creating config.h 2023-10-03T17:20:05,979 config.status: config.h is unchanged 2023-10-03T17:20:05,987 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-10-03T17:20:06,222 [ 17%] Performing build step for 'htslib' 2023-10-03T17:20:06,623 [ 20%] No install step for 'htslib' 2023-10-03T17:20:06,749 [ 22%] Completed 'htslib' 2023-10-03T17:20:06,907 [ 22%] Built target htslib 2023-10-03T17:20:07,128 Scanning dependencies of target splam_clean 2023-10-03T17:20:07,184 [ 25%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-10-03T17:20:12,337 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-10-03T17:20:12,337 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,337 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-10-03T17:20:12,337 | ^~~~~~~~~~ 2023-10-03T17:20:12,338 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,338 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-10-03T17:20:12,338 | ^~~~~~ 2023-10-03T17:20:12,338 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,338 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-10-03T17:20:12,338 | ^~~~ 2023-10-03T17:20:12,339 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,339 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-10-03T17:20:12,339 | ^~~~ 2023-10-03T17:20:12,340 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,340 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-10-03T17:20:12,340 | ^~~~~~~~~~ 2023-10-03T17:20:12,341 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,341 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-10-03T17:20:12,341 | ^~~~~~ 2023-10-03T17:20:12,341 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,341 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-10-03T17:20:12,341 | ^~~~ 2023-10-03T17:20:12,342 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,342 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-10-03T17:20:12,342 | ^~~~ 2023-10-03T17:20:12,343 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,343 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-03T17:20:12,343 | ^~~~~~~~~~ 2023-10-03T17:20:12,344 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,344 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-03T17:20:12,344 | ^~~~~~~ 2023-10-03T17:20:12,344 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,344 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-03T17:20:12,344 | ^~~~ 2023-10-03T17:20:12,345 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,345 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-03T17:20:12,345 | ^~~~ 2023-10-03T17:20:12,345 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,346 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-03T17:20:12,346 | ^~~~ 2023-10-03T17:20:12,347 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,347 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-03T17:20:12,347 | ^~~~~~~~~~ 2023-10-03T17:20:12,347 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,347 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-03T17:20:12,348 | ^~~~~~~ 2023-10-03T17:20:12,348 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,348 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-03T17:20:12,348 | ^~~~ 2023-10-03T17:20:12,348 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,349 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-03T17:20:12,349 | ^~~~ 2023-10-03T17:20:12,349 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-03T17:20:12,349 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-03T17:20:12,349 | ^~~~ 2023-10-03T17:20:17,290 [ 28%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-10-03T17:20:25,275 [ 31%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-10-03T17:20:25,759 [ 34%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-10-03T17:20:26,257 [ 37%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-10-03T17:20:26,560 [ 40%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-10-03T17:20:28,363 [ 42%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-10-03T17:20:31,025 [ 45%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-10-03T17:20:35,298 [ 48%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-10-03T17:20:39,887 [ 51%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-10-03T17:20:44,030 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-10-03T17:20:48,040 [ 57%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-10-03T17:20:51,574 [ 60%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-10-03T17:20:53,780 [ 62%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-10-03T17:20:54,846 [ 65%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-10-03T17:20:55,628 [ 68%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-10-03T17:20:56,570 [ 71%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so 2023-10-03T17:21:17,426 [ 71%] Built target splam_clean 2023-10-03T17:21:17,617 Scanning dependencies of target splam_extract 2023-10-03T17:21:17,886 [ 74%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-10-03T17:21:27,945 [ 77%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-10-03T17:21:31,936 [ 80%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-10-03T17:21:34,611 [ 82%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-10-03T17:21:38,619 [ 85%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-10-03T17:21:42,150 [ 88%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-10-03T17:21:44,332 [ 91%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-10-03T17:21:45,398 [ 94%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-10-03T17:21:46,174 [ 97%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-10-03T17:21:47,113 [100%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so 2023-10-03T17:22:01,209 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-10-03T17:22:01,210 /tmp/pip-wheel-0f4d74gb/splam_822db3b49168499484b150456e5bab92/include/gclib/GVec.hh:107:14: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-10-03T17:22:01,210 107 | fArray=new OBJ[NewCapacity]; 2023-10-03T17:22:01,211 | ^ 2023-10-03T17:22:01,211 /usr/include/c++/10/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-10-03T17:22:01,211 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-10-03T17:22:01,211 | ^ 2023-10-03T17:22:09,375 [100%] Built target splam_extract 2023-10-03T17:22:09,467 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-10-03T17:22:09,468 !! 2023-10-03T17:22:09,468 ******************************************************************************** 2023-10-03T17:22:09,468 Please avoid running ``setup.py`` directly. 2023-10-03T17:22:09,468 Instead, use pypa/build, pypa/installer or other 2023-10-03T17:22:09,469 standards-based tools. 2023-10-03T17:22:09,469 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-10-03T17:22:09,469 ******************************************************************************** 2023-10-03T17:22:09,469 !! 2023-10-03T17:22:09,469 self.initialize_options() 2023-10-03T17:22:09,491 installing to build/bdist.linux-armv7l/wheel 2023-10-03T17:22:09,491 running install 2023-10-03T17:22:09,517 running install_lib 2023-10-03T17:22:09,543 creating build/bdist.linux-armv7l 2023-10-03T17:22:09,544 creating build/bdist.linux-armv7l/wheel 2023-10-03T17:22:09,545 copying build/lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-10-03T17:22:09,564 copying build/lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-10-03T17:22:09,586 creating build/bdist.linux-armv7l/wheel/splam 2023-10-03T17:22:09,586 copying build/lib.linux-armv7l-cpython-39/splam/__init__.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-03T17:22:09,588 copying build/lib.linux-armv7l-cpython-39/splam/header.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-03T17:22:09,590 copying build/lib.linux-armv7l-cpython-39/splam/prediction.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-03T17:22:09,592 copying build/lib.linux-armv7l-cpython-39/splam/config.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-03T17:22:09,593 copying build/lib.linux-armv7l-cpython-39/splam/clean_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-03T17:22:09,595 copying build/lib.linux-armv7l-cpython-39/splam/parse.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-03T17:22:09,597 copying build/lib.linux-armv7l-cpython-39/splam/extract_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-03T17:22:09,598 copying build/lib.linux-armv7l-cpython-39/splam/chr_size.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-03T17:22:09,601 copying build/lib.linux-armv7l-cpython-39/splam/SPLAM.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-03T17:22:09,603 copying build/lib.linux-armv7l-cpython-39/splam/main.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-03T17:22:09,605 running install_egg_info 2023-10-03T17:22:09,667 running egg_info 2023-10-03T17:22:09,692 writing splam.egg-info/PKG-INFO 2023-10-03T17:22:09,698 writing dependency_links to splam.egg-info/dependency_links.txt 2023-10-03T17:22:09,700 writing entry points to splam.egg-info/entry_points.txt 2023-10-03T17:22:09,702 writing requirements to splam.egg-info/requires.txt 2023-10-03T17:22:09,704 writing top-level names to splam.egg-info/top_level.txt 2023-10-03T17:22:09,742 reading manifest file 'splam.egg-info/SOURCES.txt' 2023-10-03T17:22:09,989 reading manifest template 'MANIFEST.in' 2023-10-03T17:22:10,349 adding license file 'LICENSE' 2023-10-03T17:22:10,433 writing manifest file 'splam.egg-info/SOURCES.txt' 2023-10-03T17:22:10,436 Copying splam.egg-info to build/bdist.linux-armv7l/wheel/splam-1.0.8-py3.9.egg-info 2023-10-03T17:22:10,448 running install_scripts 2023-10-03T17:22:10,467 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-10-03T17:22:10,471 creating build/bdist.linux-armv7l/wheel/splam-1.0.8.dist-info/WHEEL 2023-10-03T17:22:10,473 creating '/tmp/pip-wheel-5a_o3_tz/splam-1.0.8-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-03T17:22:10,761 adding 'splam_clean.cpython-39-arm-linux-gnueabihf.so' 2023-10-03T17:22:11,026 adding 'splam_extract.cpython-39-arm-linux-gnueabihf.so' 2023-10-03T17:22:11,036 adding 'splam/SPLAM.py' 2023-10-03T17:22:11,037 adding 'splam/__init__.py' 2023-10-03T17:22:11,043 adding 'splam/chr_size.py' 2023-10-03T17:22:11,045 adding 'splam/clean_gff.py' 2023-10-03T17:22:11,046 adding 'splam/config.py' 2023-10-03T17:22:11,047 adding 'splam/extract_gff.py' 2023-10-03T17:22:11,048 adding 'splam/header.py' 2023-10-03T17:22:11,050 adding 'splam/main.py' 2023-10-03T17:22:11,052 adding 'splam/parse.py' 2023-10-03T17:22:11,054 adding 'splam/prediction.py' 2023-10-03T17:22:11,056 adding 'splam-1.0.8.dist-info/LICENSE' 2023-10-03T17:22:11,058 adding 'splam-1.0.8.dist-info/METADATA' 2023-10-03T17:22:11,059 adding 'splam-1.0.8.dist-info/WHEEL' 2023-10-03T17:22:11,060 adding 'splam-1.0.8.dist-info/entry_points.txt' 2023-10-03T17:22:11,061 adding 'splam-1.0.8.dist-info/top_level.txt' 2023-10-03T17:22:11,061 adding 'splam-1.0.8.dist-info/RECORD' 2023-10-03T17:22:11,074 removing build/bdist.linux-armv7l/wheel 2023-10-03T17:22:11,179 Building wheel for splam (setup.py): finished with status 'done' 2023-10-03T17:22:11,192 Created wheel for splam: filename=splam-1.0.8-cp39-cp39-linux_armv7l.whl size=919403 sha256=d09d842fec137cb356e2f817417943087db85d7db93a592243d8c2cbdfb265bd 2023-10-03T17:22:11,193 Stored in directory: /tmp/pip-ephem-wheel-cache-a12qkzp6/wheels/a4/38/00/a7f67754f1209fe0cb896211968e98761e1625c4faf80ec7f0 2023-10-03T17:22:11,206 Successfully built splam 2023-10-03T17:22:11,232 Removed build tracker: '/tmp/pip-build-tracker-yxw2lrf9'