2023-10-04T05:53:51,861 Created temporary directory: /tmp/pip-build-tracker-b2wc82oe 2023-10-04T05:53:51,862 Initialized build tracking at /tmp/pip-build-tracker-b2wc82oe 2023-10-04T05:53:51,863 Created build tracker: /tmp/pip-build-tracker-b2wc82oe 2023-10-04T05:53:51,863 Entered build tracker: /tmp/pip-build-tracker-b2wc82oe 2023-10-04T05:53:51,863 Created temporary directory: /tmp/pip-wheel-2ckqq8fg 2023-10-04T05:53:51,868 Created temporary directory: /tmp/pip-ephem-wheel-cache-kqj__vmu 2023-10-04T05:53:51,891 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-04T05:53:51,895 2 location(s) to search for versions of splam: 2023-10-04T05:53:51,895 * https://pypi.org/simple/splam/ 2023-10-04T05:53:51,895 * https://www.piwheels.org/simple/splam/ 2023-10-04T05:53:51,895 Fetching project page and analyzing links: https://pypi.org/simple/splam/ 2023-10-04T05:53:51,896 Getting page https://pypi.org/simple/splam/ 2023-10-04T05:53:51,897 Found index url https://pypi.org/simple/ 2023-10-04T05:53:51,948 Fetched page https://pypi.org/simple/splam/ as application/vnd.pypi.simple.v1+json 2023-10-04T05:53:51,958 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/57/2a/d68f86c46b3152c9072975cb1c8b3f2345e0f71cea763c0635ca8c5e0261/splam-0.2.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,958 Found link https://files.pythonhosted.org/packages/ba/e8/4cf0f802bf26fd6587829e3688109caef6d26e13d19ce003ac876212da15/splam-0.2.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.9 2023-10-04T05:53:51,959 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f0/97/c31f00ac8a786213c4a50dd993cd04e61af08766e9559f244fb9c3929178/splam-0.2.10-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,959 Found link https://files.pythonhosted.org/packages/72/d1/671663c98d0cfca3218b880633390493fcebf9972175a7c4d2752259f2ea/splam-0.2.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.10 2023-10-04T05:53:51,960 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/ad/36/84239a43f206dfbfe07c6e6f76ef8c54235439210640aeacc8cb20e24c2e/splam-0.2.11-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,960 Found link https://files.pythonhosted.org/packages/c7/b3/96a175c203358d735694d7d5fd9261ef8683af968e14e473e823d159cee1/splam-0.2.11.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.11 2023-10-04T05:53:51,960 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/a5/f5/e15307ccb65ec9c225b7f1af65ee2c8880ba8eb049d386f4c9da459b2e1e/splam-0.2.12-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,961 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ba/88/6cac004352d4aa92aabdfd31f9b96919f8044db486185d3fd3c924583bc8/splam-0.2.12-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,961 Found link https://files.pythonhosted.org/packages/32/fa/a9795e9df88e8ea6c6788ae171702d5f9d8ce2c3472408ab0784f08a7b91/splam-0.2.12.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.12 2023-10-04T05:53:51,961 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/59/88/fefee12f8e44d6879a0970d37b42fc4dc54010f78b1ee91f6db366c1f125/splam-0.2.13-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,962 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/64/13/d601e5e99b31891d95bc0a6201367dab38f12faaadcb6aedbee7725dca71/splam-0.2.13-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,962 Found link https://files.pythonhosted.org/packages/cf/fb/2e5425fcdb2e5fd7ff963b174b1582816154fd0373bbc96edf4e851d272d/splam-0.2.13.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.13 2023-10-04T05:53:51,962 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/da/65/a129eabb1d673da72f1d7dfd3495c01c89da78569b7f2dba2c746a0c0f29/splam-0.2.14-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,963 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/79/2fdaa68664126c8c71bac526b41e1e35e4195879170c8129a8d482f3ae7b/splam-0.2.14-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,963 Found link https://files.pythonhosted.org/packages/9b/3f/d7dd2411528494ed5062665c3b5d5d7d8422fd11fa181d5fc01ea67d7dbf/splam-0.2.14.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.14 2023-10-04T05:53:51,963 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f4/9a/e7d1f5f16d77888ac5d0935e180fa2210e875ff487909519d6871e1301da/splam-0.2.15-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,964 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/40/b6/eda61824794c736e52c09353dfbbd70eea4d0f0ab31896f3688d269ab64b/splam-0.2.15-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,964 Found link https://files.pythonhosted.org/packages/29/d0/5e9ef93e49636308cb56b70a06c8932321cb60a4aae678d8bb1d213b52b5/splam-0.2.15.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.15 2023-10-04T05:53:51,964 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e5/17/caa4b05a6370f2d197ec174fe1968f63acc357db5923efca0860b3a5e141/splam-0.2.16-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,965 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fe/a5/d90a02293e34acf5515a8f435ae90afeb823336d6232a7bedf01436a00f9/splam-0.2.17-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,965 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ef/af/7db5183d8c36a250bb4547c58610624b4d1067ea0eb119addc8986ce6ec1/splam-0.2.17-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,965 Found link https://files.pythonhosted.org/packages/26/3a/0e89dd56f9617853061d7c4ed6a220a414a01bba9f0005e54da52a1ad22e/splam-0.2.17.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.17 2023-10-04T05:53:51,966 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/bd/50/ae02dcd9e7c53df59acc9ad83ac389a886e55254cd6953614d43f0eaac60/splam-0.3.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,966 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/78/0b/8b0b45b16922007f88c9b81357cde8b84f9ea45327104b00724024e722ec/splam-0.3.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,966 Found link https://files.pythonhosted.org/packages/e5/c7/4bf13e849aefc7cfdd94f142e6267e4937c61d7fb9fbfe1119953f6a5e72/splam-0.3.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.3.0 2023-10-04T05:53:51,967 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/55/d8079e937d1f568ac9358237871b9d4d6d28abf1e8e8ec2b8073db7b166a/splam-0.3.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,967 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6d/9f/5e7c396bd04da9866f89f51574bd3fec1e691b279116e4d4de92b75b6538/splam-1.0.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,967 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/56/ae/c9e443ec09db88b2b2aaa18ebc6b12751b321d731ce21964ee188067bb0f/splam-1.0.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,968 Found link https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.0 2023-10-04T05:53:51,968 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/43/45/27c64605655d3127bf6155bc060f98fb565e631553e4f0e0a53d3922ebf3/splam-1.0.1-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,968 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/4d/0b5427df4d5d74ba5a98e28805b45fee4b15d2cad1e9aa91069306c29da7/splam-1.0.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,968 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/da/e1/11ee65eb50a2f628f92249d84cd72eddbc1386afbc82c7410fceb627d995/splam-1.0.1-py3.9-linux-x86_64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,969 Found link https://files.pythonhosted.org/packages/ad/3c/5a2fcc44ca9afa6bc1cb4fe6a30ba6495f9c1359c6b610536cb6c7998ca1/splam-1.0.1.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.1 2023-10-04T05:53:51,969 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6a/e7/e7827b0d637f018ef8d18ea969985ce37ffa520fd1bf6d0e8d43d72b749e/splam-1.0.2-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,969 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f2/ba/94da0985b6db88ba663b4e56a395d74d04283a79d0fdf476763251f5679f/splam-1.0.2-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,970 Found link https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.2 2023-10-04T05:53:51,970 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/30/c9/23c10c8ee217996cc58e6f16ffc732657d1cb3011f7cbc41ebb51927bbbb/splam-1.0.3-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,970 Found link https://files.pythonhosted.org/packages/b3/80/1ff08f5e516c2ce233a75e61e8ce3dacc34b00bd2cae4fae0d01b0d758e9/splam-1.0.3.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.3 2023-10-04T05:53:51,971 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/70/bd/3aacba5a589a5a8d4688781f1376a822b1df05526355738a85f10a6f0c86/splam-1.0.4-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,971 Found link https://files.pythonhosted.org/packages/b3/ef/1c49f24a396880a7ac6773041c067d1418ca533df5018de37f1fb49f512a/splam-1.0.4.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.4 2023-10-04T05:53:51,971 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/54/7e/ce14252ed5cbc26ad69ffe8ec6909d91f2bed9f97749fb5ba0f43a935479/splam-1.0.5-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,972 Found link https://files.pythonhosted.org/packages/5f/dd/ac054961585d4e5d71c889e8840dc096a847ac38b04295f38dbe524718e5/splam-1.0.5.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.5 2023-10-04T05:53:51,972 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f7/1e/02d35d67ba3f32f629f40824705e8ef82b6a80914fef3ffa59bcea67c965/splam-1.0.6-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,973 Found link https://files.pythonhosted.org/packages/b2/7d/e8f8b51f071b0bc4e2a1a0cc31db50c9acecb68271cd5bd5e113c7442fed/splam-1.0.6.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.6 2023-10-04T05:53:51,973 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/1d/57/3fbf056633d3332ab938f761553161346599e27c5f5c66f605c08b4fb2b3/splam-1.0.7-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,974 Found link https://files.pythonhosted.org/packages/a5/b6/ffa6c7c753ce7d9989d0e3adcb5310ecf29429dce73ffe51f2b63434c9fc/splam-1.0.7.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.7 2023-10-04T05:53:51,974 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/35/fa/76bf21536e4f60a1caae0132889ab74457d9c75a9476c3d0ec7b578870af/splam-1.0.8-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,974 Found link https://files.pythonhosted.org/packages/a5/ad/6d3495d79895726b6df06f3cd667006e5316fa3235e6919b841057f6e666/splam-1.0.8.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.8 2023-10-04T05:53:51,975 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fc/24/c13538db2c354993494537d33e4138e39d65e83f947f55d6f9d599e12a63/splam-1.0.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:51,975 Found link https://files.pythonhosted.org/packages/4d/2c/303bafdffb18df8357ea5c7f2bc00f9e4afd9667b9f10b411091c3adc293/splam-1.0.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.9 2023-10-04T05:53:51,976 Fetching project page and analyzing links: https://www.piwheels.org/simple/splam/ 2023-10-04T05:53:51,976 Getting page https://www.piwheels.org/simple/splam/ 2023-10-04T05:53:51,977 Found index url https://www.piwheels.org/simple/ 2023-10-04T05:53:52,040 Fetched page https://www.piwheels.org/simple/splam/ as text/html 2023-10-04T05:53:52,058 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.9-cp37-cp37m-linux_armv7l.whl#sha256=1bc7e41b94ae678aaa3ec7aed3e638a16f85ebe1e926e83b2e971dca9204d986 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:52,058 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.9-cp37-cp37m-linux_armv6l.whl#sha256=1bc7e41b94ae678aaa3ec7aed3e638a16f85ebe1e926e83b2e971dca9204d986 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:52,059 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.9-cp311-cp311-linux_armv7l.whl#sha256=4f33f01300dc6b46c228d430b148c0577d19b3f9e896bdeb9b4c43e441dbb6bb (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:52,059 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.9-cp311-cp311-linux_armv6l.whl#sha256=4f33f01300dc6b46c228d430b148c0577d19b3f9e896bdeb9b4c43e441dbb6bb (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:52,059 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.8-cp39-cp39-linux_armv7l.whl#sha256=d09d842fec137cb356e2f817417943087db85d7db93a592243d8c2cbdfb265bd (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:52,059 Skipping link: No binaries permitted for splam: 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https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv7l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:52,070 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv6l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:52,070 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv7l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:52,070 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv6l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-10-04T05:53:52,070 Skipping link: not a file: https://www.piwheels.org/simple/splam/ 2023-10-04T05:53:52,070 Skipping link: not a file: https://pypi.org/simple/splam/ 2023-10-04T05:53:52,089 Given no hashes to check 1 links for project 'splam': discarding no candidates 2023-10-04T05:53:52,104 Collecting splam==1.0.9 2023-10-04T05:53:52,106 Created temporary directory: /tmp/pip-unpack-e0agj8p6 2023-10-04T05:53:52,151 Downloading splam-1.0.9.tar.gz (40.9 MB) 2023-10-04T05:53:59,335 Added splam==1.0.9 from https://files.pythonhosted.org/packages/4d/2c/303bafdffb18df8357ea5c7f2bc00f9e4afd9667b9f10b411091c3adc293/splam-1.0.9.tar.gz to build tracker '/tmp/pip-build-tracker-b2wc82oe' 2023-10-04T05:53:59,337 Running setup.py (path:/tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/setup.py) egg_info for package splam 2023-10-04T05:53:59,338 Created temporary directory: /tmp/pip-pip-egg-info-8a55wk6_ 2023-10-04T05:53:59,338 Preparing metadata (setup.py): started 2023-10-04T05:53:59,339 Running command python setup.py egg_info 2023-10-04T05:54:00,404 running egg_info 2023-10-04T05:54:00,406 creating /tmp/pip-pip-egg-info-8a55wk6_/splam.egg-info 2023-10-04T05:54:00,429 writing /tmp/pip-pip-egg-info-8a55wk6_/splam.egg-info/PKG-INFO 2023-10-04T05:54:00,434 writing dependency_links to /tmp/pip-pip-egg-info-8a55wk6_/splam.egg-info/dependency_links.txt 2023-10-04T05:54:00,435 writing entry points to /tmp/pip-pip-egg-info-8a55wk6_/splam.egg-info/entry_points.txt 2023-10-04T05:54:00,437 writing requirements to /tmp/pip-pip-egg-info-8a55wk6_/splam.egg-info/requires.txt 2023-10-04T05:54:00,439 writing top-level names to /tmp/pip-pip-egg-info-8a55wk6_/splam.egg-info/top_level.txt 2023-10-04T05:54:00,440 writing manifest file '/tmp/pip-pip-egg-info-8a55wk6_/splam.egg-info/SOURCES.txt' 2023-10-04T05:54:00,519 reading manifest file '/tmp/pip-pip-egg-info-8a55wk6_/splam.egg-info/SOURCES.txt' 2023-10-04T05:54:00,520 reading manifest template 'MANIFEST.in' 2023-10-04T05:54:00,872 adding license file 'LICENSE' 2023-10-04T05:54:00,925 writing manifest file '/tmp/pip-pip-egg-info-8a55wk6_/splam.egg-info/SOURCES.txt' 2023-10-04T05:54:01,014 Preparing metadata (setup.py): finished with status 'done' 2023-10-04T05:54:01,019 Source in /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64 has version 1.0.9, which satisfies requirement splam==1.0.9 from https://files.pythonhosted.org/packages/4d/2c/303bafdffb18df8357ea5c7f2bc00f9e4afd9667b9f10b411091c3adc293/splam-1.0.9.tar.gz 2023-10-04T05:54:01,020 Removed splam==1.0.9 from https://files.pythonhosted.org/packages/4d/2c/303bafdffb18df8357ea5c7f2bc00f9e4afd9667b9f10b411091c3adc293/splam-1.0.9.tar.gz from build tracker '/tmp/pip-build-tracker-b2wc82oe' 2023-10-04T05:54:01,027 Created temporary directory: /tmp/pip-unpack-klpbj38l 2023-10-04T05:54:01,028 Created temporary directory: /tmp/pip-unpack-i_hwlkcd 2023-10-04T05:54:01,037 Building wheels for collected packages: splam 2023-10-04T05:54:01,040 Created temporary directory: /tmp/pip-wheel-nidfuuso 2023-10-04T05:54:01,041 Building wheel for splam (setup.py): started 2023-10-04T05:54:01,042 Destination directory: /tmp/pip-wheel-nidfuuso 2023-10-04T05:54:01,042 Running command python setup.py bdist_wheel 2023-10-04T05:54:02,012 running bdist_wheel 2023-10-04T05:54:02,079 running build 2023-10-04T05:54:02,080 running build_py 2023-10-04T05:54:02,105 creating build 2023-10-04T05:54:02,106 creating build/lib.linux-armv7l-cpython-39 2023-10-04T05:54:02,107 creating build/lib.linux-armv7l-cpython-39/splam 2023-10-04T05:54:02,108 copying splam/chr_size.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-04T05:54:02,110 copying splam/prediction.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-04T05:54:02,112 copying splam/SPLAM.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-04T05:54:02,114 copying splam/main.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-04T05:54:02,116 copying splam/clean_gff.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-04T05:54:02,117 copying splam/header.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-04T05:54:02,119 copying splam/extract_gff.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-04T05:54:02,121 copying splam/__init__.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-04T05:54:02,122 copying splam/config.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-04T05:54:02,124 copying splam/parse.py -> build/lib.linux-armv7l-cpython-39/splam 2023-10-04T05:54:02,127 running build_ext 2023-10-04T05:54:02,455 -- The C compiler identification is GNU 10.2.1 2023-10-04T05:54:02,776 -- The CXX compiler identification is GNU 10.2.1 2023-10-04T05:54:02,822 -- Detecting C compiler ABI info 2023-10-04T05:54:03,191 -- Detecting C compiler ABI info - done 2023-10-04T05:54:03,248 -- Check for working C compiler: /usr/bin/cc - skipped 2023-10-04T05:54:03,249 -- Detecting C compile features 2023-10-04T05:54:03,251 -- Detecting C compile features - done 2023-10-04T05:54:03,274 -- Detecting CXX compiler ABI info 2023-10-04T05:54:03,667 -- Detecting CXX compiler ABI info - done 2023-10-04T05:54:03,728 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-10-04T05:54:03,730 -- Detecting CXX compile features 2023-10-04T05:54:03,733 -- Detecting CXX compile features - done 2023-10-04T05:54:03,758 -- pybind11 v2.11.0 dev1 2023-10-04T05:54:03,818 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3.6") 2023-10-04T05:54:04,319 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so 2023-10-04T05:54:04,326 -- Performing Test HAS_FLTO 2023-10-04T05:54:04,893 -- Performing Test HAS_FLTO - Success 2023-10-04T05:54:04,950 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 2023-10-04T05:54:04,951 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/include/htslib 2023-10-04T05:54:04,951 LIBRARY_OUTPUT_DIRECTORY: 2023-10-04T05:54:05,085 EXAMPLE_VERSION_INFO: 1.0.9 2023-10-04T05:54:05,086 -- Configuring done 2023-10-04T05:54:05,163 -- Generating done 2023-10-04T05:54:05,175 -- Build files have been written to: /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/build/temp.linux-armv7l-cpython-39/splam_extract 2023-10-04T05:54:05,366 Scanning dependencies of target htslib 2023-10-04T05:54:05,414 [ 2%] Creating directories for 'htslib' 2023-10-04T05:54:05,741 [ 5%] No download step for 'htslib' 2023-10-04T05:54:05,851 [ 8%] No update step for 'htslib' 2023-10-04T05:54:05,962 [ 11%] No patch step for 'htslib' 2023-10-04T05:54:06,080 [ 14%] Performing configure step for 'htslib' 2023-10-04T05:54:12,553 checking for gcc... gcc 2023-10-04T05:54:12,881 checking whether the C compiler works... yes 2023-10-04T05:54:12,883 checking for C compiler default output file name... a.out 2023-10-04T05:54:13,040 checking for suffix of executables... 2023-10-04T05:54:13,222 checking whether we are cross compiling... no 2023-10-04T05:54:13,310 checking for suffix of object files... o 2023-10-04T05:54:13,387 checking whether we are using the GNU C compiler... yes 2023-10-04T05:54:13,463 checking whether gcc accepts -g... yes 2023-10-04T05:54:13,610 checking for gcc option to accept ISO C89... none needed 2023-10-04T05:54:13,612 checking for ranlib... ranlib 2023-10-04T05:54:13,621 checking for grep that handles long lines and -e... /usr/bin/grep 2023-10-04T05:54:13,699 checking for C compiler warning flags... -Wall 2023-10-04T05:54:13,811 checking how to run the C preprocessor... gcc -E 2023-10-04T05:54:13,919 checking for egrep... /usr/bin/grep -E 2023-10-04T05:54:14,391 checking for ANSI C header files... yes 2023-10-04T05:54:14,514 checking for sys/types.h... yes 2023-10-04T05:54:14,645 checking for sys/stat.h... yes 2023-10-04T05:54:14,777 checking for stdlib.h... yes 2023-10-04T05:54:14,912 checking for string.h... yes 2023-10-04T05:54:15,051 checking for memory.h... yes 2023-10-04T05:54:15,215 checking for strings.h... yes 2023-10-04T05:54:15,358 checking for inttypes.h... yes 2023-10-04T05:54:15,498 checking for stdint.h... yes 2023-10-04T05:54:15,653 checking for unistd.h... yes 2023-10-04T05:54:15,823 checking whether _XOPEN_SOURCE is declared... no 2023-10-04T05:54:16,021 checking C compiler flags needed for ssse3... none 2023-10-04T05:54:16,188 checking C compiler flags needed for popcnt... none 2023-10-04T05:54:16,356 checking C compiler flags needed for sse4.1... none 2023-10-04T05:54:16,523 checking C compiler flags needed for avx2... none 2023-10-04T05:54:16,692 checking C compiler flags needed for avx512f... none 2023-10-04T05:54:16,695 checking for pkg-config... /usr/bin/pkg-config 2023-10-04T05:54:16,701 checking pkg-config is at least version 0.9.0... yes 2023-10-04T05:54:16,703 checking for special C compiler options needed for large files... no 2023-10-04T05:54:16,909 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-10-04T05:54:16,924 checking shared library type for unknown-Linux... plain .so 2023-10-04T05:54:17,092 checking whether the linker supports versioned symbols... yes 2023-10-04T05:54:17,260 checking whether the compiler accepts -fvisibility=hidden... yes 2023-10-04T05:54:17,274 checking for stdlib.h... (cached) yes 2023-10-04T05:54:17,299 checking for unistd.h... (cached) yes 2023-10-04T05:54:17,463 checking for sys/param.h... yes 2023-10-04T05:54:17,690 checking for getpagesize... yes 2023-10-04T05:54:17,998 checking for working mmap... yes 2023-10-04T05:54:18,188 checking for gmtime_r... yes 2023-10-04T05:54:18,403 checking for fsync... yes 2023-10-04T05:54:18,613 checking for drand48... yes 2023-10-04T05:54:18,836 checking for srand48_deterministic... no 2023-10-04T05:54:18,993 checking whether fdatasync is declared... yes 2023-10-04T05:54:19,173 checking for fdatasync... yes 2023-10-04T05:54:19,595 checking for library containing log... -lm 2023-10-04T05:54:19,695 checking for zlib.h... yes 2023-10-04T05:54:19,869 checking for inflate in -lz... yes 2023-10-04T05:54:20,081 checking for library containing recv... none required 2023-10-04T05:54:20,167 checking for bzlib.h... yes 2023-10-04T05:54:20,340 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-10-04T05:54:20,352 checking whether htscodecs files are present... yes 2023-10-04T05:54:20,353 configure: WARNING: GCS support not enabled: requires libcurl support 2023-10-04T05:54:20,354 configure: WARNING: S3 support not enabled: requires libcurl support 2023-10-04T05:54:20,533 checking for library containing regcomp... none required 2023-10-04T05:54:20,603 configure: creating ./config.status 2023-10-04T05:54:20,997 config.status: creating config.mk 2023-10-04T05:54:21,056 config.status: creating htslib.pc.tmp 2023-10-04T05:54:21,121 config.status: creating config.h 2023-10-04T05:54:21,165 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-10-04T05:54:21,396 [ 17%] Performing build step for 'htslib' 2023-10-04T05:54:24,948 Updating htscodecs/htscodecs/version.h : #define HTSCODECS_VERSION_TEXT "1.5.1" 2023-10-04T05:55:19,074 [ 20%] No install step for 'htslib' 2023-10-04T05:55:19,190 [ 22%] Completed 'htslib' 2023-10-04T05:55:19,340 [ 22%] Built target htslib 2023-10-04T05:55:19,589 Scanning dependencies of target splam_clean 2023-10-04T05:55:19,644 [ 25%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-10-04T05:55:24,840 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-10-04T05:55:24,840 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,840 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-10-04T05:55:24,840 | ^~~~~~~~~~ 2023-10-04T05:55:24,840 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,841 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-10-04T05:55:24,841 | ^~~~~~ 2023-10-04T05:55:24,841 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,841 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-10-04T05:55:24,841 | ^~~~ 2023-10-04T05:55:24,841 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,842 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-10-04T05:55:24,842 | ^~~~ 2023-10-04T05:55:24,842 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,842 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-10-04T05:55:24,842 | ^~~~~~~~~~ 2023-10-04T05:55:24,842 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,843 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-10-04T05:55:24,843 | ^~~~~~ 2023-10-04T05:55:24,843 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,843 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-10-04T05:55:24,843 | ^~~~ 2023-10-04T05:55:24,843 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,843 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-10-04T05:55:24,844 | ^~~~ 2023-10-04T05:55:24,844 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,844 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-04T05:55:24,844 | ^~~~~~~~~~ 2023-10-04T05:55:24,844 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,844 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-04T05:55:24,844 | ^~~~~~~ 2023-10-04T05:55:24,844 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,845 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-04T05:55:24,845 | ^~~~ 2023-10-04T05:55:24,845 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,845 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-04T05:55:24,845 | ^~~~ 2023-10-04T05:55:24,845 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,845 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-04T05:55:24,845 | ^~~~ 2023-10-04T05:55:24,846 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,846 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-04T05:55:24,846 | ^~~~~~~~~~ 2023-10-04T05:55:24,846 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,846 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-04T05:55:24,846 | ^~~~~~~ 2023-10-04T05:55:24,847 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,847 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-04T05:55:24,847 | ^~~~ 2023-10-04T05:55:24,847 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,847 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-04T05:55:24,847 | ^~~~ 2023-10-04T05:55:24,848 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:55:24,848 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-04T05:55:24,848 | ^~~~ 2023-10-04T05:55:29,787 [ 28%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-10-04T05:55:37,805 [ 31%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-10-04T05:55:38,279 [ 34%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-10-04T05:55:38,775 [ 37%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-10-04T05:55:39,076 [ 40%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-10-04T05:55:40,845 [ 42%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-10-04T05:55:43,532 [ 45%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-10-04T05:55:47,462 [ 48%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-10-04T05:55:51,994 [ 51%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-10-04T05:55:56,112 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-10-04T05:56:00,431 [ 57%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-10-04T05:56:03,971 [ 60%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-10-04T05:56:06,136 [ 62%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-10-04T05:56:07,201 [ 65%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-10-04T05:56:07,979 [ 68%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-10-04T05:56:08,922 [ 71%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so 2023-10-04T05:56:29,691 [ 71%] Built target splam_clean 2023-10-04T05:56:29,835 Scanning dependencies of target splam_extract 2023-10-04T05:56:29,888 [ 74%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-10-04T05:56:40,004 [ 77%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-10-04T05:56:43,948 [ 80%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-10-04T05:56:46,617 [ 82%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-10-04T05:56:50,621 [ 85%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-10-04T05:56:54,100 [ 88%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-10-04T05:56:56,274 [ 91%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-10-04T05:56:57,347 [ 94%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-10-04T05:56:58,122 [ 97%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-10-04T05:56:59,065 [100%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so 2023-10-04T05:57:13,123 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-10-04T05:57:13,123 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/include/gclib/GVec.hh:107:14: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-10-04T05:57:13,123 107 | fArray=new OBJ[NewCapacity]; 2023-10-04T05:57:13,124 | ^ 2023-10-04T05:57:13,124 /usr/include/c++/10/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-10-04T05:57:13,124 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-10-04T05:57:13,124 | ^ 2023-10-04T05:57:21,321 [100%] Built target splam_extract 2023-10-04T05:57:21,688 -- The C compiler identification is GNU 10.2.1 2023-10-04T05:57:22,037 -- The CXX compiler identification is GNU 10.2.1 2023-10-04T05:57:22,081 -- Detecting C compiler ABI info 2023-10-04T05:57:22,412 -- Detecting C compiler ABI info - done 2023-10-04T05:57:22,469 -- Check for working C compiler: /usr/bin/cc - skipped 2023-10-04T05:57:22,470 -- Detecting C compile features 2023-10-04T05:57:22,472 -- Detecting C compile features - done 2023-10-04T05:57:22,496 -- Detecting CXX compiler ABI info 2023-10-04T05:57:22,915 -- Detecting CXX compiler ABI info - done 2023-10-04T05:57:22,973 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-10-04T05:57:22,975 -- Detecting CXX compile features 2023-10-04T05:57:22,978 -- Detecting CXX compile features - done 2023-10-04T05:57:23,002 -- pybind11 v2.11.0 dev1 2023-10-04T05:57:23,065 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3.6") 2023-10-04T05:57:23,560 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so 2023-10-04T05:57:23,567 -- Performing Test HAS_FLTO 2023-10-04T05:57:24,135 -- Performing Test HAS_FLTO - Success 2023-10-04T05:57:24,175 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 2023-10-04T05:57:24,176 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/include/htslib 2023-10-04T05:57:24,176 LIBRARY_OUTPUT_DIRECTORY: 2023-10-04T05:57:24,342 EXAMPLE_VERSION_INFO: 1.0.9 2023-10-04T05:57:24,344 -- Configuring done 2023-10-04T05:57:24,419 -- Generating done 2023-10-04T05:57:24,431 -- Build files have been written to: /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/build/temp.linux-armv7l-cpython-39/splam_clean 2023-10-04T05:57:24,623 Scanning dependencies of target htslib 2023-10-04T05:57:24,670 [ 2%] Creating directories for 'htslib' 2023-10-04T05:57:24,998 [ 5%] No download step for 'htslib' 2023-10-04T05:57:25,143 [ 8%] No update step for 'htslib' 2023-10-04T05:57:25,261 [ 11%] No patch step for 'htslib' 2023-10-04T05:57:25,375 [ 14%] Performing configure step for 'htslib' 2023-10-04T05:57:29,827 checking for gcc... gcc 2023-10-04T05:57:30,165 checking whether the C compiler works... yes 2023-10-04T05:57:30,166 checking for C compiler default output file name... a.out 2023-10-04T05:57:30,321 checking for suffix of executables... 2023-10-04T05:57:30,496 checking whether we are cross compiling... no 2023-10-04T05:57:30,583 checking for suffix of object files... o 2023-10-04T05:57:30,660 checking whether we are using the GNU C compiler... yes 2023-10-04T05:57:30,738 checking whether gcc accepts -g... yes 2023-10-04T05:57:30,857 checking for gcc option to accept ISO C89... none needed 2023-10-04T05:57:30,859 checking for ranlib... ranlib 2023-10-04T05:57:30,867 checking for grep that handles long lines and -e... /usr/bin/grep 2023-10-04T05:57:30,945 checking for C compiler warning flags... -Wall 2023-10-04T05:57:31,053 checking how to run the C preprocessor... gcc -E 2023-10-04T05:57:31,161 checking for egrep... /usr/bin/grep -E 2023-10-04T05:57:31,639 checking for ANSI C header files... yes 2023-10-04T05:57:31,756 checking for sys/types.h... yes 2023-10-04T05:57:31,886 checking for sys/stat.h... yes 2023-10-04T05:57:32,017 checking for stdlib.h... yes 2023-10-04T05:57:32,153 checking for string.h... yes 2023-10-04T05:57:32,293 checking for memory.h... yes 2023-10-04T05:57:32,470 checking for strings.h... yes 2023-10-04T05:57:32,611 checking for inttypes.h... yes 2023-10-04T05:57:32,754 checking for stdint.h... yes 2023-10-04T05:57:32,904 checking for unistd.h... yes 2023-10-04T05:57:33,071 checking whether _XOPEN_SOURCE is declared... no 2023-10-04T05:57:33,266 checking C compiler flags needed for ssse3... none 2023-10-04T05:57:33,432 checking C compiler flags needed for popcnt... none 2023-10-04T05:57:33,599 checking C compiler flags needed for sse4.1... none 2023-10-04T05:57:33,768 checking C compiler flags needed for avx2... none 2023-10-04T05:57:33,933 checking C compiler flags needed for avx512f... none 2023-10-04T05:57:33,936 checking for pkg-config... /usr/bin/pkg-config 2023-10-04T05:57:33,942 checking pkg-config is at least version 0.9.0... yes 2023-10-04T05:57:33,944 checking for special C compiler options needed for large files... no 2023-10-04T05:57:34,148 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-10-04T05:57:34,169 checking shared library type for unknown-Linux... plain .so 2023-10-04T05:57:34,375 checking whether the linker supports versioned symbols... yes 2023-10-04T05:57:34,542 checking whether the compiler accepts -fvisibility=hidden... yes 2023-10-04T05:57:34,555 checking for stdlib.h... (cached) yes 2023-10-04T05:57:34,578 checking for unistd.h... (cached) yes 2023-10-04T05:57:34,741 checking for sys/param.h... yes 2023-10-04T05:57:34,970 checking for getpagesize... yes 2023-10-04T05:57:35,276 checking for working mmap... yes 2023-10-04T05:57:35,465 checking for gmtime_r... yes 2023-10-04T05:57:35,692 checking for fsync... yes 2023-10-04T05:57:35,891 checking for drand48... yes 2023-10-04T05:57:36,115 checking for srand48_deterministic... no 2023-10-04T05:57:36,271 checking whether fdatasync is declared... yes 2023-10-04T05:57:36,468 checking for fdatasync... yes 2023-10-04T05:57:36,859 checking for library containing log... -lm 2023-10-04T05:57:36,959 checking for zlib.h... yes 2023-10-04T05:57:37,133 checking for inflate in -lz... yes 2023-10-04T05:57:37,349 checking for library containing recv... none required 2023-10-04T05:57:37,435 checking for bzlib.h... yes 2023-10-04T05:57:37,608 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-10-04T05:57:37,618 checking whether htscodecs files are present... yes 2023-10-04T05:57:37,620 configure: WARNING: GCS support not enabled: requires libcurl support 2023-10-04T05:57:37,621 configure: WARNING: S3 support not enabled: requires libcurl support 2023-10-04T05:57:37,797 checking for library containing regcomp... none required 2023-10-04T05:57:37,860 configure: creating ./config.status 2023-10-04T05:57:38,252 config.status: creating config.mk 2023-10-04T05:57:38,314 config.status: creating htslib.pc.tmp 2023-10-04T05:57:38,380 config.status: creating config.h 2023-10-04T05:57:38,410 config.status: config.h is unchanged 2023-10-04T05:57:38,419 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-10-04T05:57:38,663 [ 17%] Performing build step for 'htslib' 2023-10-04T05:57:39,088 [ 20%] No install step for 'htslib' 2023-10-04T05:57:39,203 [ 22%] Completed 'htslib' 2023-10-04T05:57:39,355 [ 22%] Built target htslib 2023-10-04T05:57:39,568 Scanning dependencies of target splam_clean 2023-10-04T05:57:39,622 [ 25%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-10-04T05:57:44,785 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-10-04T05:57:44,785 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,785 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-10-04T05:57:44,785 | ^~~~~~~~~~ 2023-10-04T05:57:44,786 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,786 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-10-04T05:57:44,786 | ^~~~~~ 2023-10-04T05:57:44,786 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,786 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-10-04T05:57:44,786 | ^~~~ 2023-10-04T05:57:44,787 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,787 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-10-04T05:57:44,787 | ^~~~ 2023-10-04T05:57:44,787 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,787 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-10-04T05:57:44,787 | ^~~~~~~~~~ 2023-10-04T05:57:44,788 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,788 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-10-04T05:57:44,788 | ^~~~~~ 2023-10-04T05:57:44,788 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,788 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-10-04T05:57:44,788 | ^~~~ 2023-10-04T05:57:44,788 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,788 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-10-04T05:57:44,789 | ^~~~ 2023-10-04T05:57:44,789 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,789 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-04T05:57:44,789 | ^~~~~~~~~~ 2023-10-04T05:57:44,789 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,789 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-04T05:57:44,789 | ^~~~~~~ 2023-10-04T05:57:44,790 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,790 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-04T05:57:44,790 | ^~~~ 2023-10-04T05:57:44,790 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,790 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-04T05:57:44,790 | ^~~~ 2023-10-04T05:57:44,790 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,790 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-10-04T05:57:44,790 | ^~~~ 2023-10-04T05:57:44,791 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,791 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-04T05:57:44,791 | ^~~~~~~~~~ 2023-10-04T05:57:44,791 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,791 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-04T05:57:44,791 | ^~~~~~~ 2023-10-04T05:57:44,792 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,792 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-04T05:57:44,792 | ^~~~ 2023-10-04T05:57:44,792 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,792 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-04T05:57:44,792 | ^~~~ 2023-10-04T05:57:44,792 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-04T05:57:44,793 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-10-04T05:57:44,793 | ^~~~ 2023-10-04T05:57:49,746 [ 28%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-10-04T05:57:57,743 [ 31%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-10-04T05:57:58,431 [ 34%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-10-04T05:57:58,963 [ 37%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-10-04T05:57:59,264 [ 40%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-10-04T05:58:01,069 [ 42%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-10-04T05:58:03,763 [ 45%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-10-04T05:58:07,698 [ 48%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-10-04T05:58:12,238 [ 51%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-10-04T05:58:16,336 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-10-04T05:58:20,397 [ 57%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-10-04T05:58:23,888 [ 60%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-10-04T05:58:26,074 [ 62%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-10-04T05:58:27,145 [ 65%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-10-04T05:58:27,926 [ 68%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-10-04T05:58:28,873 [ 71%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so 2023-10-04T05:58:49,632 [ 71%] Built target splam_clean 2023-10-04T05:58:49,771 Scanning dependencies of target splam_extract 2023-10-04T05:58:49,824 [ 74%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-10-04T05:58:59,864 [ 77%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-10-04T05:59:03,835 [ 80%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-10-04T05:59:06,504 [ 82%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-10-04T05:59:10,518 [ 85%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-10-04T05:59:14,019 [ 88%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-10-04T05:59:16,403 [ 91%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-10-04T05:59:17,479 [ 94%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-10-04T05:59:18,254 [ 97%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-10-04T05:59:19,198 [100%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so 2023-10-04T05:59:33,227 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-10-04T05:59:33,228 /tmp/pip-wheel-2ckqq8fg/splam_1244336fa50f4f8f8fcfcbb3af66af64/include/gclib/GVec.hh:107:14: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-10-04T05:59:33,228 107 | fArray=new OBJ[NewCapacity]; 2023-10-04T05:59:33,228 | ^ 2023-10-04T05:59:33,228 /usr/include/c++/10/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-10-04T05:59:33,229 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-10-04T05:59:33,229 | ^ 2023-10-04T05:59:41,448 [100%] Built target splam_extract 2023-10-04T05:59:41,537 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-10-04T05:59:41,537 !! 2023-10-04T05:59:41,537 ******************************************************************************** 2023-10-04T05:59:41,537 Please avoid running ``setup.py`` directly. 2023-10-04T05:59:41,537 Instead, use pypa/build, pypa/installer or other 2023-10-04T05:59:41,538 standards-based tools. 2023-10-04T05:59:41,538 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-10-04T05:59:41,538 ******************************************************************************** 2023-10-04T05:59:41,538 !! 2023-10-04T05:59:41,538 self.initialize_options() 2023-10-04T05:59:41,560 installing to build/bdist.linux-armv7l/wheel 2023-10-04T05:59:41,560 running install 2023-10-04T05:59:41,586 running install_lib 2023-10-04T05:59:41,609 creating build/bdist.linux-armv7l 2023-10-04T05:59:41,609 creating build/bdist.linux-armv7l/wheel 2023-10-04T05:59:41,611 creating build/bdist.linux-armv7l/wheel/splam 2023-10-04T05:59:41,612 copying build/lib.linux-armv7l-cpython-39/splam/chr_size.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-04T05:59:41,615 copying build/lib.linux-armv7l-cpython-39/splam/prediction.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-04T05:59:41,617 copying build/lib.linux-armv7l-cpython-39/splam/SPLAM.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-04T05:59:41,618 copying build/lib.linux-armv7l-cpython-39/splam/main.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-04T05:59:41,621 copying build/lib.linux-armv7l-cpython-39/splam/clean_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-04T05:59:41,623 copying build/lib.linux-armv7l-cpython-39/splam/header.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-04T05:59:41,624 copying build/lib.linux-armv7l-cpython-39/splam/extract_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-04T05:59:41,626 copying build/lib.linux-armv7l-cpython-39/splam/__init__.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-04T05:59:41,627 copying build/lib.linux-armv7l-cpython-39/splam/config.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-04T05:59:41,629 copying build/lib.linux-armv7l-cpython-39/splam/parse.py -> build/bdist.linux-armv7l/wheel/splam 2023-10-04T05:59:41,631 copying build/lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-10-04T05:59:41,651 copying build/lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-10-04T05:59:41,670 running install_egg_info 2023-10-04T05:59:41,731 running egg_info 2023-10-04T05:59:41,753 writing splam.egg-info/PKG-INFO 2023-10-04T05:59:41,758 writing dependency_links to splam.egg-info/dependency_links.txt 2023-10-04T05:59:41,760 writing entry points to splam.egg-info/entry_points.txt 2023-10-04T05:59:41,761 writing requirements to splam.egg-info/requires.txt 2023-10-04T05:59:41,763 writing top-level names to splam.egg-info/top_level.txt 2023-10-04T05:59:41,790 reading manifest file 'splam.egg-info/SOURCES.txt' 2023-10-04T05:59:42,030 reading manifest template 'MANIFEST.in' 2023-10-04T05:59:42,400 adding license file 'LICENSE' 2023-10-04T05:59:42,484 writing manifest file 'splam.egg-info/SOURCES.txt' 2023-10-04T05:59:42,488 Copying splam.egg-info to build/bdist.linux-armv7l/wheel/splam-1.0.9-py3.9.egg-info 2023-10-04T05:59:42,502 running install_scripts 2023-10-04T05:59:42,521 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-10-04T05:59:42,525 creating build/bdist.linux-armv7l/wheel/splam-1.0.9.dist-info/WHEEL 2023-10-04T05:59:42,528 creating '/tmp/pip-wheel-nidfuuso/splam-1.0.9-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-04T05:59:42,813 adding 'splam_clean.cpython-39-arm-linux-gnueabihf.so' 2023-10-04T05:59:43,076 adding 'splam_extract.cpython-39-arm-linux-gnueabihf.so' 2023-10-04T05:59:43,086 adding 'splam/SPLAM.py' 2023-10-04T05:59:43,087 adding 'splam/__init__.py' 2023-10-04T05:59:43,093 adding 'splam/chr_size.py' 2023-10-04T05:59:43,095 adding 'splam/clean_gff.py' 2023-10-04T05:59:43,096 adding 'splam/config.py' 2023-10-04T05:59:43,097 adding 'splam/extract_gff.py' 2023-10-04T05:59:43,098 adding 'splam/header.py' 2023-10-04T05:59:43,100 adding 'splam/main.py' 2023-10-04T05:59:43,102 adding 'splam/parse.py' 2023-10-04T05:59:43,104 adding 'splam/prediction.py' 2023-10-04T05:59:43,106 adding 'splam-1.0.9.dist-info/LICENSE' 2023-10-04T05:59:43,108 adding 'splam-1.0.9.dist-info/METADATA' 2023-10-04T05:59:43,109 adding 'splam-1.0.9.dist-info/WHEEL' 2023-10-04T05:59:43,110 adding 'splam-1.0.9.dist-info/entry_points.txt' 2023-10-04T05:59:43,111 adding 'splam-1.0.9.dist-info/top_level.txt' 2023-10-04T05:59:43,112 adding 'splam-1.0.9.dist-info/RECORD' 2023-10-04T05:59:43,123 removing build/bdist.linux-armv7l/wheel 2023-10-04T05:59:43,226 Building wheel for splam (setup.py): finished with status 'done' 2023-10-04T05:59:43,239 Created wheel for splam: filename=splam-1.0.9-cp39-cp39-linux_armv7l.whl size=919515 sha256=44f5167a6e516b0978dc68706f97145bd2f751f86bfb806567fad389e455e0a0 2023-10-04T05:59:43,240 Stored in directory: /tmp/pip-ephem-wheel-cache-kqj__vmu/wheels/63/ba/07/0ac92093b9b6742612762f7d7b416b0af1c194b42e297c66b7 2023-10-04T05:59:43,252 Successfully built splam 2023-10-04T05:59:43,276 Removed build tracker: '/tmp/pip-build-tracker-b2wc82oe'