2023-10-04T11:25:33,632 Created temporary directory: /tmp/pip-build-tracker-w679rz2x 2023-10-04T11:25:33,634 Initialized build tracking at /tmp/pip-build-tracker-w679rz2x 2023-10-04T11:25:33,634 Created build tracker: /tmp/pip-build-tracker-w679rz2x 2023-10-04T11:25:33,634 Entered build tracker: /tmp/pip-build-tracker-w679rz2x 2023-10-04T11:25:33,635 Created temporary directory: /tmp/pip-wheel-0wve1u9m 2023-10-04T11:25:33,640 Created temporary directory: /tmp/pip-ephem-wheel-cache-youqz_et 2023-10-04T11:25:33,664 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-04T11:25:33,668 2 location(s) to search for versions of viennarna: 2023-10-04T11:25:33,668 * https://pypi.org/simple/viennarna/ 2023-10-04T11:25:33,668 * https://www.piwheels.org/simple/viennarna/ 2023-10-04T11:25:33,668 Fetching project page and analyzing links: https://pypi.org/simple/viennarna/ 2023-10-04T11:25:33,669 Getting page https://pypi.org/simple/viennarna/ 2023-10-04T11:25:33,670 Found index url https://pypi.org/simple/ 2023-10-04T11:25:33,723 Fetched page https://pypi.org/simple/viennarna/ as application/vnd.pypi.simple.v1+json 2023-10-04T11:25:33,740 Found link https://files.pythonhosted.org/packages/77/72/75bb8baeebb7112f80e8561a3e31edef5d108309900e6cc409d4ced943cf/ViennaRNA-2.5.0a5.tar.gz (from https://pypi.org/simple/viennarna/), version: 2.5.0a5 2023-10-04T11:25:33,741 Found link https://files.pythonhosted.org/packages/82/c0/576a5423bb28d496f75bedad46a8edeafaef439c2573d56d2340c525dc8e/ViennaRNA-2.6.2a0.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2a0 2023-10-04T11:25:33,741 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/56/d7/4be5f10eed2081a3bd54b8ba051159d3d05432eecd58c83b72f535b76e21/ViennaRNA-2.6.2-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,741 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/89/fa/1b4d9474cff058f4e23ce3dffc2c8cc6fa7aa980782f44324fbeeabb55f0/ViennaRNA-2.6.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,741 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/b2/9eeacfc00e825ca78aabc27ead72c32b2056e74d784846e66c80549f8bc3/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,742 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a5/f3/9c602f1c4e7cf2bb95c31bba8b4908f2ddf862204aceb999377b1e76a263/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,742 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b9/50/273d56b829109ec99f52a3250d5975969ea92f8a1d1fe569460a8505a067/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,742 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/4e/c3/d1d4388ce289b97970f762a68cfd7821971b80e2c2a56c3e7c091485c966/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,742 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/fa/c1/b794e68d98c1b7a204e4e5da625e9953f83a3c554d19689d9a1108a1d9fb/ViennaRNA-2.6.2-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,742 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/de/45/e9b08e19992bec9300ffb94cd49f7ea974912cee94de5d4dd0b10697d0d7/ViennaRNA-2.6.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,743 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/38/c8/71736f66a09668eaef822836989f72781dd8ae12f4d0303170445429889c/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,743 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/70/56/bf9b92ad84d1aa0b31265d9a14c58ffcaa236ae460c4365737145bb12489/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,743 Skipping link: No binaries permitted for viennarna: 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https://files.pythonhosted.org/packages/3b/5e/16bbe0cda15be9dd038dbe30b3fb53d8f8edc21c5121f67bc594934b196c/ViennaRNA-2.6.2-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,744 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/66/7f/56eb458650c056b8c1ed6e22185238926e7836b5701d357ef896ce5abb33/ViennaRNA-2.6.2-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,745 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/1c/ef/3297531f48acfdeeb4f10083d0d7d7e5f7af06e7905ac2061344ccac6022/ViennaRNA-2.6.2-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,745 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/36/44/ac509347ec8f9b9c5cb69f4adc993b6f782bab7ed63639a1645450bb5d1c/ViennaRNA-2.6.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,745 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b8/34/89df39d5162afa18e7f487cb110d8aa8ae936d909b42e3be398e1c41b758/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,745 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/bb/0f/c33a98d884ada4b9c7478bed87eb0c66de9da9ecc45babf7604e652d7e36/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,745 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e6/57/7f28f32fa5b43507cd5d4b871fa8d5a43645db2acaf94a028c31b7dd1d8b/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,746 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/a7/fe40da076361a3c71467bcdbba0fc42bab89b4561869c966ffa2539dc942/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,746 Found link https://files.pythonhosted.org/packages/b3/73/44904c687790f2d9e151caf4dc6f1a97eb1beb5da1d089a79784abefa4a2/ViennaRNA-2.6.2.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2 2023-10-04T11:25:33,746 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a3/9e/1e2ae50082ea8589f06adc18fd9d4ba5d5eceeaf11fdb00a507a7633a6c5/ViennaRNA-2.6.3-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,747 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/5f/8f/c4b456b1d535ca3a5f5647e038f5ec9fab5925482fb538fcba51f2bc6a44/ViennaRNA-2.6.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,747 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/24/86/ceb1b342925dedb6a9e5fd4eddf3c66f3c511e42c4a8e34aa20aa04b6ed5/ViennaRNA-2.6.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,747 Skipping link: No binaries permitted for viennarna: 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https://files.pythonhosted.org/packages/7a/9f/8c2cb862e732bd3c2d8920a912cf8924605c62e97bcbcda002f83d533ff6/ViennaRNA-2.6.3-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,748 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/59/aa/b2280bcc389c924dc72a72c1ae8028fe695c4a245f41b2ab1eb8681d91bd/ViennaRNA-2.6.3-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,748 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/46/b4/70c9716977d6e0019246b03d258802c568d6fa5b3cd0987deeac778dc262/ViennaRNA-2.6.3-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,748 Skipping link: No binaries permitted for viennarna: 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https://files.pythonhosted.org/packages/e3/90/8324e8a078d271eea60e30163e0097f40b5fffcfc2f22ebc60af685cb4ce/ViennaRNA-2.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,751 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/23/08/678c1fa8bd1c355fecfd9375434cfb452bdf1d9d5eb67147c2a8f2f0b85f/ViennaRNA-2.6.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,751 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/08/71/4cf098294da264cadbd1e35e25f5664b37278ce4640ff983f9a48a4b442f/ViennaRNA-2.6.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,751 Found link https://files.pythonhosted.org/packages/3b/c9/0f29227b21be07188d7eca38fdc1d4a8f5aff444e2301f635b48c5a9212a/ViennaRNA-2.6.3.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.3 2023-10-04T11:25:33,752 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ae/44/d577ecb451fb46a247c532af2b64ac5210cbaa44670e338f2a5f5d9f26a9/ViennaRNA-2.6.4-cp310-cp310-macosx_10_14_universal2.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,752 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/37/f4/512139978d1abea349cc9b47105a89650c362458ef197ffae65a542ed987/ViennaRNA-2.6.4-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,752 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/d3/3d/dad21aa9984aabe2e7e2e4a654980b4f97e1055269683ec2aabaf3636868/ViennaRNA-2.6.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,752 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/22/4e/0bee35f4b5473d4e67e2bd6b86e3f7f3e810a2e0fd65af6bd3127bf9cc46/ViennaRNA-2.6.4-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,752 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/2c/28/a02e7c3f4f9a8ba7a04f731c501e2bf993712a3f6c4ddc0515f304c4d142/ViennaRNA-2.6.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,753 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e7/22/e6eca1c4eeaafbe5fff316193d9e14df49565c64d285ee3427ecd216452d/ViennaRNA-2.6.4-cp310-cp310-musllinux_1_1_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,753 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/58/84/db82240387642dacc6250de7b9e9ae46d803456154a5be04347a52a51d85/ViennaRNA-2.6.4-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,753 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f4/d7/adb55a6cab29a6d061599254338bf020f1ca06cfa30abeeceae32d66b1e3/ViennaRNA-2.6.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,753 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/1b/c4/bdfee2a4919c3a1c61bca62fb4b31b876ff29036580d3df86df9f4ff1fa8/ViennaRNA-2.6.4-cp311-cp311-macosx_10_14_universal2.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,753 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/80/95/ea210ec71ba5c4733bd2d38b5a28dc75aa4f9e25121901a701e638227d26/ViennaRNA-2.6.4-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,753 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/0a/9b/f0aaa97ae5066f7834a5ebb1715a5543d5788b51e4d88c28d0991a99cfd0/ViennaRNA-2.6.4-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,754 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b5/de/6938be5328062a168d423d1bfd9de198cc37d37ec6d255118e7e5f02fd54/ViennaRNA-2.6.4-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,754 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/0d/46/320b29d453cfbc56702bccc99d62be5d38f4cd48adfae988c6129afd6d66/ViennaRNA-2.6.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,754 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ff/d7/38c0c83ba378c8fd16df113e95a57c7f4c82b76f4591f2ac42487a58a8dc/ViennaRNA-2.6.4-cp311-cp311-musllinux_1_1_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,754 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ae/11/a811edc36fb930843041fa6a9a48ae64b0417810c107e80bd83b9cc472f3/ViennaRNA-2.6.4-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,754 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/37/a4/6b7fd246c3f2f18315fbadab6d29fe38c9f69d587d3921f3fa6aca24f8d7/ViennaRNA-2.6.4-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,755 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b4/7e/9bebb77adce65380a0b484cdc51fb8e231d8ae6e6193bbce82f6924d011d/ViennaRNA-2.6.4-cp38-cp38-macosx_10_14_universal2.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,755 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/77/a8/be255f7f001468a17c98e448bffbd635e4a3db9162f31ac15efa1e94f5a3/ViennaRNA-2.6.4-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,755 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b0/ac/6de28ec570c1ae8428bf39ce94662f3528ba80d5713a20c12a0611c81b48/ViennaRNA-2.6.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,755 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/81/e4/4fb24e3a8d8d1dae7b74df2be76e190cb5d6a7afb88cead665941cad4ace/ViennaRNA-2.6.4-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,755 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ac/04/81d46b8ca018f1da5a47f5df970f4d8a3bd5ad5ed11a0d3b8b4fc7990293/ViennaRNA-2.6.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,756 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/57/f3/3b162475fcbc331b0a6cb7283ad7db93ed81fce1cfb755346171c2561972/ViennaRNA-2.6.4-cp38-cp38-musllinux_1_1_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,756 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/de/ec/8b6ef6ae823185a09e338b6bc5c30fc24954b64adbc22ff0cd94b7006ebc/ViennaRNA-2.6.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,756 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/54/1c/5a3ab1a182eb1cd722fe705f2bb3f7f1b69d2a2e2c58d2041f1ead0a5cbe/ViennaRNA-2.6.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,756 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/12/a4/de2e4073d00e5875180c03f6959d7d21236aeaff9f4abba5ed4c0103caec/ViennaRNA-2.6.4-cp39-cp39-macosx_10_14_universal2.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,756 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/00/e4/0e3be2424395638a2a1b13be9d77026fcc88c3df049214d65e952abd86e0/ViennaRNA-2.6.4-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,756 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/83/e8/e3ca4ea66864ffd6ee92dff037fee55cd7c71c2e308582e619149b90f728/ViennaRNA-2.6.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,757 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c8/00/9060255b59929afe91da29d289cd8c938005617babf07959740c57ff39eb/ViennaRNA-2.6.4-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,757 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a9/4b/3a29f5b1d16303060114ac246822b15f7cd72bdc41807bf4fc6acc3714d5/ViennaRNA-2.6.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,757 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/50/74/785b12ae7fb30cf8866857e9e16f4e420958bdccf40ccf237b1d9dd2ca86/ViennaRNA-2.6.4-cp39-cp39-musllinux_1_1_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,757 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/d5/b9/f2c15d890d305bc028ed7e24bb7039d7d7dd918172a5684ea6d68203cba0/ViennaRNA-2.6.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,757 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/07/68/80cf4d7b0c905f27dbfbbfe24ed0aeba243053807fecc553cbb3bbf81b31/ViennaRNA-2.6.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-10-04T11:25:33,758 Found link https://files.pythonhosted.org/packages/72/f2/5c17a51459fe4f2bcf5f9bfb269aef2c35d1776cb2b03b62543d112bfb82/ViennaRNA-2.6.4.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.4 2023-10-04T11:25:33,758 Fetching project page and analyzing links: https://www.piwheels.org/simple/viennarna/ 2023-10-04T11:25:33,759 Getting page https://www.piwheels.org/simple/viennarna/ 2023-10-04T11:25:33,760 Found index url https://www.piwheels.org/simple/ 2023-10-04T11:25:33,822 Fetched page https://www.piwheels.org/simple/viennarna/ as text/html 2023-10-04T11:25:33,823 Skipping link: not a file: https://www.piwheels.org/simple/viennarna/ 2023-10-04T11:25:33,824 Skipping link: not a file: https://pypi.org/simple/viennarna/ 2023-10-04T11:25:33,845 Given no hashes to check 1 links for project 'viennarna': discarding no candidates 2023-10-04T11:25:33,870 Collecting viennarna==2.6.4 2023-10-04T11:25:33,872 Created temporary directory: /tmp/pip-unpack-0db9fq82 2023-10-04T11:25:33,938 Downloading ViennaRNA-2.6.4.tar.gz (5.8 MB) 2023-10-04T11:25:40,234 Added viennarna==2.6.4 from https://files.pythonhosted.org/packages/72/f2/5c17a51459fe4f2bcf5f9bfb269aef2c35d1776cb2b03b62543d112bfb82/ViennaRNA-2.6.4.tar.gz to build tracker '/tmp/pip-build-tracker-w679rz2x' 2023-10-04T11:25:40,239 Created temporary directory: /tmp/pip-build-env-50kb9e6f 2023-10-04T11:25:40,248 Installing build dependencies: started 2023-10-04T11:25:40,249 Running command pip subprocess to install build dependencies 2023-10-04T11:25:41,413 Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-10-04T11:25:41,938 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-04T11:25:43,524 Collecting setuptools>=61.0 2023-10-04T11:25:43,590 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-10-04T11:25:45,279 Installing collected packages: setuptools 2023-10-04T11:25:47,351 Successfully installed setuptools-68.2.2 2023-10-04T11:25:48,022 Installing build dependencies: finished with status 'done' 2023-10-04T11:25:48,027 Getting requirements to build wheel: started 2023-10-04T11:25:48,028 Running command Getting requirements to build wheel 2023-10-04T11:25:48,871 running egg_info 2023-10-04T11:25:48,877 writing ViennaRNA.egg-info/PKG-INFO 2023-10-04T11:25:48,880 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2023-10-04T11:25:48,883 writing top-level names to ViennaRNA.egg-info/top_level.txt 2023-10-04T11:25:48,904 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-10-04T11:25:49,125 reading manifest template 'MANIFEST.in' 2023-10-04T11:25:50,548 adding license file 'COPYING' 2023-10-04T11:25:50,548 adding license file 'AUTHORS' 2023-10-04T11:25:50,646 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-10-04T11:25:50,742 Getting requirements to build wheel: finished with status 'done' 2023-10-04T11:25:50,752 Installing backend dependencies: started 2023-10-04T11:25:50,753 Running command pip subprocess to install backend dependencies 2023-10-04T11:25:51,917 Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-10-04T11:25:52,442 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-04T11:25:52,790 Collecting wheel 2023-10-04T11:25:52,809 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-10-04T11:25:54,165 Installing collected packages: wheel 2023-10-04T11:25:54,612 Creating /tmp/pip-build-env-50kb9e6f/normal/bin 2023-10-04T11:25:54,614 changing mode of /tmp/pip-build-env-50kb9e6f/normal/bin/wheel to 755 2023-10-04T11:25:54,626 Successfully installed wheel-0.41.2 2023-10-04T11:25:55,029 Installing backend dependencies: finished with status 'done' 2023-10-04T11:25:55,031 Created temporary directory: /tmp/pip-modern-metadata-lmjk41m2 2023-10-04T11:25:55,034 Preparing metadata (pyproject.toml): started 2023-10-04T11:25:55,035 Running command Preparing metadata (pyproject.toml) 2023-10-04T11:25:55,924 running dist_info 2023-10-04T11:25:55,929 creating /tmp/pip-modern-metadata-lmjk41m2/ViennaRNA.egg-info 2023-10-04T11:25:55,933 writing /tmp/pip-modern-metadata-lmjk41m2/ViennaRNA.egg-info/PKG-INFO 2023-10-04T11:25:55,937 writing dependency_links to /tmp/pip-modern-metadata-lmjk41m2/ViennaRNA.egg-info/dependency_links.txt 2023-10-04T11:25:55,939 writing top-level names to /tmp/pip-modern-metadata-lmjk41m2/ViennaRNA.egg-info/top_level.txt 2023-10-04T11:25:55,940 writing manifest file '/tmp/pip-modern-metadata-lmjk41m2/ViennaRNA.egg-info/SOURCES.txt' 2023-10-04T11:25:55,975 reading manifest file '/tmp/pip-modern-metadata-lmjk41m2/ViennaRNA.egg-info/SOURCES.txt' 2023-10-04T11:25:55,978 reading manifest template 'MANIFEST.in' 2023-10-04T11:25:57,346 adding license file 'COPYING' 2023-10-04T11:25:57,346 adding license file 'AUTHORS' 2023-10-04T11:25:57,413 writing manifest file '/tmp/pip-modern-metadata-lmjk41m2/ViennaRNA.egg-info/SOURCES.txt' 2023-10-04T11:25:57,416 creating '/tmp/pip-modern-metadata-lmjk41m2/ViennaRNA-2.6.4.dist-info' 2023-10-04T11:25:57,563 Preparing metadata (pyproject.toml): finished with status 'done' 2023-10-04T11:25:57,574 Source in /tmp/pip-wheel-0wve1u9m/viennarna_d2fdccf2c98f4c8280863c6686a56072 has version 2.6.4, which satisfies requirement viennarna==2.6.4 from https://files.pythonhosted.org/packages/72/f2/5c17a51459fe4f2bcf5f9bfb269aef2c35d1776cb2b03b62543d112bfb82/ViennaRNA-2.6.4.tar.gz 2023-10-04T11:25:57,575 Removed viennarna==2.6.4 from https://files.pythonhosted.org/packages/72/f2/5c17a51459fe4f2bcf5f9bfb269aef2c35d1776cb2b03b62543d112bfb82/ViennaRNA-2.6.4.tar.gz from build tracker '/tmp/pip-build-tracker-w679rz2x' 2023-10-04T11:25:57,582 Created temporary directory: /tmp/pip-unpack-hyq77rnt 2023-10-04T11:25:57,583 Created temporary directory: /tmp/pip-unpack-dpit1cps 2023-10-04T11:25:57,586 Building wheels for collected packages: viennarna 2023-10-04T11:25:57,590 Created temporary directory: /tmp/pip-wheel-7qjmy2e4 2023-10-04T11:25:57,591 Destination directory: /tmp/pip-wheel-7qjmy2e4 2023-10-04T11:25:57,593 Building wheel for viennarna (pyproject.toml): started 2023-10-04T11:25:57,594 Running command Building wheel for viennarna (pyproject.toml) 2023-10-04T11:25:58,397 running bdist_wheel 2023-10-04T11:25:58,413 running build 2023-10-04T11:25:58,414 running build_py 2023-10-04T11:25:58,418 creating build 2023-10-04T11:25:58,418 creating build/lib.linux-armv7l-cpython-39 2023-10-04T11:25:58,419 creating build/lib.linux-armv7l-cpython-39/RNA 2023-10-04T11:25:58,420 copying interfaces/Python/RNA/__init__.py -> build/lib.linux-armv7l-cpython-39/RNA 2023-10-04T11:25:58,422 copying interfaces/Python/RNA/RNA.py -> build/lib.linux-armv7l-cpython-39/RNA 2023-10-04T11:25:58,432 creating build/lib.linux-armv7l-cpython-39/ViennaRNA 2023-10-04T11:25:58,433 copying interfaces/Python/ViennaRNA/__init__.py -> build/lib.linux-armv7l-cpython-39/ViennaRNA 2023-10-04T11:25:58,436 running egg_info 2023-10-04T11:25:58,439 writing ViennaRNA.egg-info/PKG-INFO 2023-10-04T11:25:58,443 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2023-10-04T11:25:58,444 writing top-level names to ViennaRNA.egg-info/top_level.txt 2023-10-04T11:25:58,455 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-10-04T11:25:58,500 reading manifest template 'MANIFEST.in' 2023-10-04T11:25:59,851 adding license file 'COPYING' 2023-10-04T11:25:59,852 adding license file 'AUTHORS' 2023-10-04T11:25:59,950 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-10-04T11:26:00,051 running build_ext 2023-10-04T11:26:00,058 building 'RNA._RNA' extension 2023-10-04T11:26:00,062 creating build/temp.linux-armv7l-cpython-39 2023-10-04T11:26:00,062 creating build/temp.linux-armv7l-cpython-39/interfaces 2023-10-04T11:26:00,063 creating build/temp.linux-armv7l-cpython-39/interfaces/Python 2023-10-04T11:26:00,064 creating build/temp.linux-armv7l-cpython-39/src 2023-10-04T11:26:00,065 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA 2023-10-04T11:26:00,067 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints 2023-10-04T11:26:00,068 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures 2023-10-04T11:26:00,070 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io 2023-10-04T11:26:00,071 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape 2023-10-04T11:26:00,073 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops 2023-10-04T11:26:00,074 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params 2023-10-04T11:26:00,076 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting 2023-10-04T11:26:00,076 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/RNApuzzler 2023-10-04T11:26:00,078 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/naview 2023-10-04T11:26:00,079 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/search 2023-10-04T11:26:00,081 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils 2023-10-04T11:26:00,082 creating build/temp.linux-armv7l-cpython-39/src/cephes 2023-10-04T11:26:00,083 creating build/temp.linux-armv7l-cpython-39/src/json 2023-10-04T11:26:00,084 creating build/temp.linux-armv7l-cpython-39/src/libsvm-3.31 2023-10-04T11:26:00,085 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c interfaces/Python/RNA_wrap.cpp -o build/temp.linux-armv7l-cpython-39/interfaces/Python/RNA_wrap.o -fopenmp 2023-10-04T11:26:09,760 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned char var_array_Sl_unsigned_SS_char_Sg__get(const var_array*, int)’: 2023-10-04T11:26:09,761 interfaces/Python/RNA_wrap.cpp:7255:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:26:09,761 7255 | if (((i < 0) && (-i >= max_i)) || 2023-10-04T11:26:09,761 | ~~~^~~~~~~~ 2023-10-04T11:26:09,761 interfaces/Python/RNA_wrap.cpp:7256:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:26:09,761 7256 | ((i >= 0) && (i >= max_i))) 2023-10-04T11:26:09,761 | ~~^~~~~~~~ 2023-10-04T11:26:09,777 interfaces/Python/RNA_wrap.cpp: In function ‘const char var_array_Sl_char_Sg__get(const var_array*, int)’: 2023-10-04T11:26:09,778 interfaces/Python/RNA_wrap.cpp:7468:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:26:09,778 7468 | if (((i < 0) && (-i >= max_i)) || 2023-10-04T11:26:09,778 | ~~~^~~~~~~~ 2023-10-04T11:26:09,778 interfaces/Python/RNA_wrap.cpp:7469:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:26:09,778 7469 | ((i >= 0) && (i >= max_i))) 2023-10-04T11:26:09,779 | ~~^~~~~~~~ 2023-10-04T11:26:09,798 interfaces/Python/RNA_wrap.cpp: In function ‘const short int var_array_Sl_short_Sg__get(const var_array*, int)’: 2023-10-04T11:26:09,798 interfaces/Python/RNA_wrap.cpp:7658:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:26:09,798 7658 | if (((i < 0) && (-i >= max_i)) || 2023-10-04T11:26:09,798 | ~~~^~~~~~~~ 2023-10-04T11:26:09,798 interfaces/Python/RNA_wrap.cpp:7659:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:26:09,799 7659 | ((i >= 0) && (i >= max_i))) 2023-10-04T11:26:09,799 | ~~^~~~~~~~ 2023-10-04T11:26:09,812 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned int var_array_Sl_unsigned_SS_int_Sg__get(const var_array*, int)’: 2023-10-04T11:26:09,813 interfaces/Python/RNA_wrap.cpp:7871:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:26:09,813 7871 | if (((i < 0) && (-i >= max_i)) || 2023-10-04T11:26:09,813 | ~~~^~~~~~~~ 2023-10-04T11:26:09,813 interfaces/Python/RNA_wrap.cpp:7872:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:26:09,813 7872 | ((i >= 0) && (i >= max_i))) 2023-10-04T11:26:09,813 | ~~^~~~~~~~ 2023-10-04T11:26:09,827 interfaces/Python/RNA_wrap.cpp: In function ‘const int var_array_Sl_int_Sg__get(const var_array*, int)’: 2023-10-04T11:26:09,827 interfaces/Python/RNA_wrap.cpp:8061:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:26:09,827 8061 | if (((i < 0) && (-i >= max_i)) || 2023-10-04T11:26:09,827 | ~~~^~~~~~~~ 2023-10-04T11:26:09,828 interfaces/Python/RNA_wrap.cpp:8062:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:26:09,828 8062 | ((i >= 0) && (i >= max_i))) 2023-10-04T11:26:09,828 | ~~^~~~~~~~ 2023-10-04T11:26:09,842 interfaces/Python/RNA_wrap.cpp: In function ‘const FLT_OR_DBL var_array_Sl_FLT_OR_DBL_Sg__get(const var_array*, int)’: 2023-10-04T11:26:09,842 interfaces/Python/RNA_wrap.cpp:8251:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:26:09,842 8251 | if (((i < 0) && (-i >= max_i)) || 2023-10-04T11:26:09,843 | ~~~^~~~~~~~ 2023-10-04T11:26:09,843 interfaces/Python/RNA_wrap.cpp:8252:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:26:09,843 8252 | ((i >= 0) && (i >= max_i))) 2023-10-04T11:26:09,843 | ~~^~~~~~~~ 2023-10-04T11:26:09,852 interfaces/Python/RNA_wrap.cpp: In function ‘const vrna_move_t var_array_Sl_vrna_move_t_Sg__get(const var_array*, int)’: 2023-10-04T11:26:09,852 interfaces/Python/RNA_wrap.cpp:8441:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:26:09,852 8441 | if (((i < 0) && (-i >= max_i)) || 2023-10-04T11:26:09,853 | ~~~^~~~~~~~ 2023-10-04T11:26:09,853 interfaces/Python/RNA_wrap.cpp:8442:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:26:09,853 8442 | ((i >= 0) && (i >= max_i))) 2023-10-04T11:26:09,853 | ~~^~~~~~~~ 2023-10-04T11:26:09,922 interfaces/Python/RNA_wrap.cpp: In function ‘var_array* my_ptable(std::string, unsigned int)’: 2023-10-04T11:26:09,922 interfaces/Python/RNA_wrap.cpp:8964:21: warning: unused variable ‘i’ [-Wunused-variable] 2023-10-04T11:26:09,922 8964 | int i; 2023-10-04T11:26:09,922 | ^ 2023-10-04T11:26:09,923 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_pt_pk_remove(std::vector >, unsigned int)’: 2023-10-04T11:26:09,923 interfaces/Python/RNA_wrap.cpp:9018:15: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:26:09,924 9018 | if (pt[0] != pt.size() - 1) 2023-10-04T11:26:09,933 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_loopidx_from_ptable(std::vector >)’: 2023-10-04T11:26:09,934 interfaces/Python/RNA_wrap.cpp:9170:25: warning: unused variable ‘i’ [-Wunused-variable] 2023-10-04T11:26:09,934 9170 | int i, *idx; 2023-10-04T11:26:09,934 | ^ 2023-10-04T11:26:09,983 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, float*)’: 2023-10-04T11:26:09,983 interfaces/Python/RNA_wrap.cpp:10217:11: warning: unused variable ‘s’ [-Wunused-variable] 2023-10-04T11:26:09,983 10217 | char *s, **tok, **ptr, *struc, *sequence; 2023-10-04T11:26:09,983 | ^ 2023-10-04T11:26:09,985 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, char*, float*)’: 2023-10-04T11:26:09,985 interfaces/Python/RNA_wrap.cpp:10268:11: warning: unused variable ‘s’ [-Wunused-variable] 2023-10-04T11:26:09,985 10268 | char *s, **tok, **ptr, *struc, *sequence; 2023-10-04T11:26:09,985 | ^ 2023-10-04T11:26:09,992 interfaces/Python/RNA_wrap.cpp: In function ‘double my_pf_add(double, double, double)’: 2023-10-04T11:26:09,993 interfaces/Python/RNA_wrap.cpp:10521:12: warning: unused variable ‘result’ [-Wunused-variable] 2023-10-04T11:26:09,993 10521 | double result = 0; 2023-10-04T11:26:09,993 | ^~~~~~ 2023-10-04T11:26:10,045 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_command_s* my_file_commands_read(std::string, unsigned int)’: 2023-10-04T11:26:10,045 interfaces/Python/RNA_wrap.cpp:11288:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-10-04T11:26:10,045 11288 | int i; 2023-10-04T11:26:10,046 | ^ 2023-10-04T11:26:10,137 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_sc_f_callback(int, int, int, int, unsigned char, void*)’: 2023-10-04T11:26:10,137 interfaces/Python/RNA_wrap.cpp:12638:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-04T11:26:10,138 12638 | PyObject *func, *arglist, *result, *err; 2023-10-04T11:26:10,138 | ^~~~~~~ 2023-10-04T11:26:10,141 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_basepair_t* py_wrap_sc_bt_callback(int, int, int, int, unsigned char, void*)’: 2023-10-04T11:26:10,142 interfaces/Python/RNA_wrap.cpp:12710:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-04T11:26:10,142 12710 | PyObject *func, *arglist, *result, *bp, *err; 2023-10-04T11:26:10,142 | ^~~~~~~ 2023-10-04T11:26:10,144 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_sc_exp_f_callback(int, int, int, int, unsigned char, void*)’: 2023-10-04T11:26:10,144 interfaces/Python/RNA_wrap.cpp:12829:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-04T11:26:10,144 12829 | PyObject *func, *arglist, *result, *err; 2023-10-04T11:26:10,145 | ^~~~~~~ 2023-10-04T11:26:10,154 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_ud_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2023-10-04T11:26:10,154 interfaces/Python/RNA_wrap.cpp:13269:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-04T11:26:10,154 13269 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2023-10-04T11:26:10,155 | ^~~~~~~ 2023-10-04T11:26:10,157 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_exp_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2023-10-04T11:26:10,157 interfaces/Python/RNA_wrap.cpp:13329:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-04T11:26:10,157 13329 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2023-10-04T11:26:10,157 | ^~~~~~~ 2023-10-04T11:26:10,159 interfaces/Python/RNA_wrap.cpp: In function ‘void py_wrap_ud_prob_add(vrna_fold_compound_t*, int, int, unsigned int, FLT_OR_DBL, void*)’: 2023-10-04T11:26:10,159 interfaces/Python/RNA_wrap.cpp:13389:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-04T11:26:10,159 13389 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_prob; 2023-10-04T11:26:10,159 | ^~~~~~~ 2023-10-04T11:26:10,161 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_prob_get(vrna_fold_compound_t*, int, int, unsigned int, int, void*)’: 2023-10-04T11:26:10,161 interfaces/Python/RNA_wrap.cpp:13448:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-04T11:26:10,162 13448 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_motif; 2023-10-04T11:26:10,162 | ^~~~~~~ 2023-10-04T11:26:10,164 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_subopt_cb(const char*, float, void*)’: 2023-10-04T11:26:10,164 interfaces/Python/RNA_wrap.cpp:13550:37: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-04T11:26:10,164 13550 | PyObject *func, *arglist, *result, *err, *py_structure, *py_energy; 2023-10-04T11:26:10,164 | ^~~~~~~ 2023-10-04T11:26:10,166 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_bs_cb(const char*, void*)’: 2023-10-04T11:26:10,166 interfaces/Python/RNA_wrap.cpp:13636:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-04T11:26:10,166 13636 | PyObject *func, *arglist, *result, *err; 2023-10-04T11:26:10,167 | ^~~~~~~ 2023-10-04T11:26:10,167 interfaces/Python/RNA_wrap.cpp:13641:28: warning: unused variable ‘py_energy’ [-Wunused-variable] 2023-10-04T11:26:10,167 13641 | PyObject *py_structure, *py_energy; 2023-10-04T11:26:10,167 | ^~~~~~~~~ 2023-10-04T11:26:10,169 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_cb(int, int, const char*, float, void*)’: 2023-10-04T11:26:10,169 interfaces/Python/RNA_wrap.cpp:13735:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-04T11:26:10,169 13735 | PyObject *func, *arglist, *result, *err; 2023-10-04T11:26:10,169 | ^~~~~~~ 2023-10-04T11:26:10,171 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_zscore_cb(int, int, const char*, float, float, void*)’: 2023-10-04T11:26:10,171 interfaces/Python/RNA_wrap.cpp:13789:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-04T11:26:10,171 13789 | PyObject *func, *arglist, *result, *err; 2023-10-04T11:26:10,171 | ^~~~~~~ 2023-10-04T11:26:10,176 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_pf_window_cb(FLT_OR_DBL*, int, int, int, unsigned int, void*)’: 2023-10-04T11:26:10,176 interfaces/Python/RNA_wrap.cpp:13941:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-04T11:26:10,176 13941 | PyObject *func, *arglist, *result, *pr_list, *err; 2023-10-04T11:26:10,177 | ^~~~~~~ 2023-10-04T11:26:10,180 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_heat_capacity_cb(float, float, void*)’: 2023-10-04T11:26:10,180 interfaces/Python/RNA_wrap.cpp:14100:43: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-04T11:26:10,180 14100 | PyObject *func, *arglist, *result, *err, *py_temp, *py_hc; 2023-10-04T11:26:10,180 | ^~~~~~~ 2023-10-04T11:26:10,182 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_move_update_cb(vrna_fold_compound_t*, vrna_move_t, unsigned int, void*)’: 2023-10-04T11:26:10,183 interfaces/Python/RNA_wrap.cpp:14194:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-10-04T11:26:10,183 14194 | PyObject *func, *arglist, *result, *err, *py_fc, *py_neighbor, *py_state; 2023-10-04T11:26:10,183 | ^~~~~~~ 2023-10-04T11:26:10,206 interfaces/Python/RNA_wrap.cpp: In function ‘double vrna_fold_compound_t_exp_E_ext_stem(vrna_fold_compound_t*, int, int)’: 2023-10-04T11:26:10,206 interfaces/Python/RNA_wrap.cpp:14554:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:26:10,206 14554 | if (j < self->length) 2023-10-04T11:26:10,207 | ~~^~~~~~~~~~~~~~ 2023-10-04T11:26:10,232 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2023-10-04T11:26:10,232 interfaces/Python/RNA_wrap.cpp:14976:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-10-04T11:26:10,232 14976 | int i; 2023-10-04T11:26:10,233 | ^ 2023-10-04T11:26:10,236 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_gradient__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int)’: 2023-10-04T11:26:10,236 interfaces/Python/RNA_wrap.cpp:15020:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-10-04T11:26:10,236 15020 | int i; 2023-10-04T11:26:10,237 | ^ 2023-10-04T11:26:10,240 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_random__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2023-10-04T11:26:10,240 interfaces/Python/RNA_wrap.cpp:15064:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-10-04T11:26:10,241 15064 | int i; 2023-10-04T11:26:10,241 | ^ 2023-10-04T11:26:11,973 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_temperature_set(PyObject*)’: 2023-10-04T11:26:11,974 interfaces/Python/RNA_wrap.cpp:54962:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,974 54962 | fail: 2023-10-04T11:26:11,974 | ^~~~ 2023-10-04T11:26:11,974 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_dangles_set(PyObject*)’: 2023-10-04T11:26:11,974 interfaces/Python/RNA_wrap.cpp:54982:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,974 54982 | fail: 2023-10-04T11:26:11,974 | ^~~~ 2023-10-04T11:26:11,984 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_betaScale_set(PyObject*)’: 2023-10-04T11:26:11,984 interfaces/Python/RNA_wrap.cpp:55002:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,984 55002 | fail: 2023-10-04T11:26:11,985 | ^~~~ 2023-10-04T11:26:11,985 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_pf_smooth_set(PyObject*)’: 2023-10-04T11:26:11,985 interfaces/Python/RNA_wrap.cpp:55022:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,985 55022 | fail: 2023-10-04T11:26:11,985 | ^~~~ 2023-10-04T11:26:11,985 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_tetra_loop_set(PyObject*)’: 2023-10-04T11:26:11,985 interfaces/Python/RNA_wrap.cpp:55042:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,986 55042 | fail: 2023-10-04T11:26:11,986 | ^~~~ 2023-10-04T11:26:11,986 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_special_hp_set(PyObject*)’: 2023-10-04T11:26:11,986 interfaces/Python/RNA_wrap.cpp:55062:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,986 55062 | fail: 2023-10-04T11:26:11,986 | ^~~~ 2023-10-04T11:26:11,986 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLonelyPairs_set(PyObject*)’: 2023-10-04T11:26:11,987 interfaces/Python/RNA_wrap.cpp:55082:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,987 55082 | fail: 2023-10-04T11:26:11,987 | ^~~~ 2023-10-04T11:26:11,987 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLP_set(PyObject*)’: 2023-10-04T11:26:11,987 interfaces/Python/RNA_wrap.cpp:55102:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,987 55102 | fail: 2023-10-04T11:26:11,987 | ^~~~ 2023-10-04T11:26:11,987 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGU_set(PyObject*)’: 2023-10-04T11:26:11,988 interfaces/Python/RNA_wrap.cpp:55122:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,988 55122 | fail: 2023-10-04T11:26:11,988 | ^~~~ 2023-10-04T11:26:11,988 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_no_closingGU_set(PyObject*)’: 2023-10-04T11:26:11,988 interfaces/Python/RNA_wrap.cpp:55142:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,988 55142 | fail: 2023-10-04T11:26:11,988 | ^~~~ 2023-10-04T11:26:11,989 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGUclosure_set(PyObject*)’: 2023-10-04T11:26:11,989 interfaces/Python/RNA_wrap.cpp:55162:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,989 55162 | fail: 2023-10-04T11:26:11,989 | ^~~~ 2023-10-04T11:26:11,989 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_logML_set(PyObject*)’: 2023-10-04T11:26:11,989 interfaces/Python/RNA_wrap.cpp:55182:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,989 55182 | fail: 2023-10-04T11:26:11,990 | ^~~~ 2023-10-04T11:26:11,990 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_circ_set(PyObject*)’: 2023-10-04T11:26:11,990 interfaces/Python/RNA_wrap.cpp:55202:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,990 55202 | fail: 2023-10-04T11:26:11,990 | ^~~~ 2023-10-04T11:26:11,990 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_gquad_set(PyObject*)’: 2023-10-04T11:26:11,990 interfaces/Python/RNA_wrap.cpp:55222:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,990 55222 | fail: 2023-10-04T11:26:11,991 | ^~~~ 2023-10-04T11:26:11,991 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_uniq_ML_set(PyObject*)’: 2023-10-04T11:26:11,991 interfaces/Python/RNA_wrap.cpp:55242:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,991 55242 | fail: 2023-10-04T11:26:11,991 | ^~~~ 2023-10-04T11:26:11,991 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_energy_set_set(PyObject*)’: 2023-10-04T11:26:11,991 interfaces/Python/RNA_wrap.cpp:55262:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,991 55262 | fail: 2023-10-04T11:26:11,992 | ^~~~ 2023-10-04T11:26:11,992 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_backtrack_set(PyObject*)’: 2023-10-04T11:26:11,992 interfaces/Python/RNA_wrap.cpp:55282:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,992 55282 | fail: 2023-10-04T11:26:11,992 | ^~~~ 2023-10-04T11:26:11,992 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_do_backtrack_set(PyObject*)’: 2023-10-04T11:26:11,992 interfaces/Python/RNA_wrap.cpp:55325:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,993 55325 | fail: 2023-10-04T11:26:11,993 | ^~~~ 2023-10-04T11:26:11,993 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_compute_bpp_set(PyObject*)’: 2023-10-04T11:26:11,993 interfaces/Python/RNA_wrap.cpp:55345:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,993 55345 | fail: 2023-10-04T11:26:11,993 | ^~~~ 2023-10-04T11:26:11,993 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_max_bp_span_set(PyObject*)’: 2023-10-04T11:26:11,993 interfaces/Python/RNA_wrap.cpp:55365:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,994 55365 | fail: 2023-10-04T11:26:11,994 | ^~~~ 2023-10-04T11:26:11,994 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_min_loop_size_set(PyObject*)’: 2023-10-04T11:26:11,994 interfaces/Python/RNA_wrap.cpp:55385:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,994 55385 | fail: 2023-10-04T11:26:11,994 | ^~~~ 2023-10-04T11:26:11,994 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_window_size_set(PyObject*)’: 2023-10-04T11:26:11,994 interfaces/Python/RNA_wrap.cpp:55405:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,995 55405 | fail: 2023-10-04T11:26:11,995 | ^~~~ 2023-10-04T11:26:11,995 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_ribo_set(PyObject*)’: 2023-10-04T11:26:11,995 interfaces/Python/RNA_wrap.cpp:55448:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,995 55448 | fail: 2023-10-04T11:26:11,995 | ^~~~ 2023-10-04T11:26:11,996 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_cv_fact_set(PyObject*)’: 2023-10-04T11:26:11,996 interfaces/Python/RNA_wrap.cpp:55468:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,996 55468 | fail: 2023-10-04T11:26:11,996 | ^~~~ 2023-10-04T11:26:11,996 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_nc_fact_set(PyObject*)’: 2023-10-04T11:26:11,996 interfaces/Python/RNA_wrap.cpp:55488:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,996 55488 | fail: 2023-10-04T11:26:11,996 | ^~~~ 2023-10-04T11:26:11,997 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_sfact_set(PyObject*)’: 2023-10-04T11:26:11,997 interfaces/Python/RNA_wrap.cpp:55508:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,997 55508 | fail: 2023-10-04T11:26:11,997 | ^~~~ 2023-10-04T11:26:11,997 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_salt_set(PyObject*)’: 2023-10-04T11:26:11,998 interfaces/Python/RNA_wrap.cpp:55528:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,998 55528 | fail: 2023-10-04T11:26:11,998 | ^~~~ 2023-10-04T11:26:11,998 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInit_set(PyObject*)’: 2023-10-04T11:26:11,998 interfaces/Python/RNA_wrap.cpp:55548:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,998 55548 | fail: 2023-10-04T11:26:11,998 | ^~~~ 2023-10-04T11:26:11,999 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInitFact_set(PyObject*)’: 2023-10-04T11:26:11,999 interfaces/Python/RNA_wrap.cpp:55568:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:11,999 55568 | fail: 2023-10-04T11:26:11,999 | ^~~~ 2023-10-04T11:26:12,735 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_symbolset_set(PyObject*)’: 2023-10-04T11:26:12,735 interfaces/Python/RNA_wrap.cpp:70883:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-10-04T11:26:12,735 70883 | fail: 2023-10-04T11:26:12,735 | ^~~~ 2023-10-04T11:26:13,370 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-04T11:26:13,371 interfaces/Python/RNA_wrap.cpp:85694:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-10-04T11:26:13,371 85694 | PyObject *o, *o2, *o3; 2023-10-04T11:26:13,371 | ^~ 2023-10-04T11:26:13,375 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-04T11:26:13,375 interfaces/Python/RNA_wrap.cpp:85776:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-10-04T11:26:13,375 85776 | PyObject *o, *o2, *o3; 2023-10-04T11:26:13,376 | ^~ 2023-10-04T11:26:13,380 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-04T11:26:13,380 interfaces/Python/RNA_wrap.cpp:85866:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-10-04T11:26:13,380 85866 | PyObject *o, *o2, *o3; 2023-10-04T11:26:13,380 | ^~ 2023-10-04T11:26:13,473 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-04T11:26:13,473 interfaces/Python/RNA_wrap.cpp:88139:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-10-04T11:26:13,473 88139 | PyObject *o, *o2, *o3; 2023-10-04T11:26:13,474 | ^~ 2023-10-04T11:26:13,482 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-04T11:26:13,483 interfaces/Python/RNA_wrap.cpp:88384:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-10-04T11:26:13,483 88384 | PyObject *o, *o2, *o3; 2023-10-04T11:26:13,483 | ^~ 2023-10-04T11:26:13,492 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-04T11:26:13,493 interfaces/Python/RNA_wrap.cpp:88667:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-10-04T11:26:13,493 88667 | PyObject *o, *o2, *o3; 2023-10-04T11:26:13,493 | ^~ 2023-10-04T11:26:45,783 In file included from /usr/include/c++/10/vector:72, 2023-10-04T11:26:45,783 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:26:45,783 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’: 2023-10-04T11:26:45,783 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:26:45,784 721 | vector<_Tp, _Alloc>:: 2023-10-04T11:26:45,784 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:26:45,784 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:26:45,784 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:26:45,873 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-10-04T11:26:45,873 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:26:45,873 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:26:45,874 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:26:47,994 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = duplex_list_t; _Alloc = std::allocator]’: 2023-10-04T11:26:47,995 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:26:47,995 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:26:47,995 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:26:47,995 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:26:47,996 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:10,392 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-04T11:27:10,392 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval5’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:27:10,393 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-10-04T11:27:10,393 | ^ 2023-10-04T11:27:10,401 interfaces/Python/RNA_wrap.cpp:88087:26: note: ‘retval5’ was declared here 2023-10-04T11:27:10,401 88087 | vrna_pbacktrack_mem_t *retval5 ; 2023-10-04T11:27:10,401 | ^~~~~~~ 2023-10-04T11:27:10,490 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-04T11:27:10,490 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval6’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:27:10,490 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-10-04T11:27:10,490 | ^ 2023-10-04T11:27:10,498 interfaces/Python/RNA_wrap.cpp:88327:26: note: ‘retval6’ was declared here 2023-10-04T11:27:10,499 88327 | vrna_pbacktrack_mem_t *retval6 ; 2023-10-04T11:27:10,499 | ^~~~~~~ 2023-10-04T11:27:10,599 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-04T11:27:10,599 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval7’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:27:10,600 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-10-04T11:27:10,600 | ^ 2023-10-04T11:27:10,608 interfaces/Python/RNA_wrap.cpp:88605:26: note: ‘retval7’ was declared here 2023-10-04T11:27:10,608 88605 | vrna_pbacktrack_mem_t *retval7 ; 2023-10-04T11:27:10,608 | ^~~~~~~ 2023-10-04T11:27:44,430 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_move_neighbor_diff__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-04T11:27:44,430 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘temp4’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:27:44,431 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-10-04T11:27:44,431 | ^ 2023-10-04T11:27:44,439 interfaces/Python/RNA_wrap.cpp:86462:29: note: ‘temp4’ was declared here 2023-10-04T11:27:44,440 86462 | var_array< vrna_move_t > *temp4 ; 2023-10-04T11:27:44,440 | ^~~~~ 2023-10-04T11:27:46,785 In file included from /usr/include/c++/10/vector:72, 2023-10-04T11:27:46,785 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:27:46,785 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-10-04T11:27:46,786 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:46,786 426 | vector<_Tp, _Alloc>:: 2023-10-04T11:27:46,786 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:46,821 In file included from /usr/include/c++/10/vector:67, 2023-10-04T11:27:46,822 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:27:46,822 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_append(PyObject*, PyObject*, PyObject*)’: 2023-10-04T11:27:46,822 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:46,822 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:27:46,822 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:27:46,888 /usr/include/c++/10/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-10-04T11:27:46,889 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:46,889 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:27:46,889 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:27:46,889 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:46,889 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:27:46,889 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:27:46,958 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_push_back(PyObject*, PyObject*, PyObject*)’: 2023-10-04T11:27:46,959 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:46,959 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:27:46,959 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:27:46,994 In file included from /usr/include/c++/10/vector:72, 2023-10-04T11:27:46,994 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:27:46,994 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator]’: 2023-10-04T11:27:46,994 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:46,994 171 | vector<_Tp, _Alloc>:: 2023-10-04T11:27:46,994 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:47,006 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator]’: 2023-10-04T11:27:47,006 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:47,006 184 | vector<_Tp, _Alloc>:: 2023-10-04T11:27:47,007 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:47,007 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:47,039 In file included from /usr/include/c++/10/vector:67, 2023-10-04T11:27:47,039 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:27:47,039 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-10-04T11:27:47,039 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:47,039 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-04T11:27:47,040 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:47,040 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:47,040 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-04T11:27:47,040 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:47,040 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:47,040 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-04T11:27:47,040 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:47,127 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’: 2023-10-04T11:27:47,128 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:47,128 1665 | _M_range_insert(__pos, __first, __last, 2023-10-04T11:27:47,128 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:47,128 1666 | std::__iterator_category(__first)); 2023-10-04T11:27:47,128 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:47,128 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:47,129 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:47,129 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-04T11:27:47,129 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:47,129 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:47,129 1665 | _M_range_insert(__pos, __first, __last, 2023-10-04T11:27:47,129 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:47,129 1666 | std::__iterator_category(__first)); 2023-10-04T11:27:47,129 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:47,130 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:47,222 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector___delslice__(PyObject*, PyObject*, PyObject*)’: 2023-10-04T11:27:47,222 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:47,222 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-04T11:27:47,222 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:47,270 In file included from /usr/include/c++/10/vector:72, 2023-10-04T11:27:47,270 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:27:47,271 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Arg&&) [with _Arg = double; _Tp = double; _Alloc = std::allocator]’: 2023-10-04T11:27:47,271 /usr/include/c++/10/bits/vector.tcc:395:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:47,271 395 | vector<_Tp, _Alloc>:: 2023-10-04T11:27:47,271 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:47,310 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2023-10-04T11:27:47,310 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:47,310 509 | vector<_Tp, _Alloc>:: 2023-10-04T11:27:47,310 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:56,068 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vrna_path_s&}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-10-04T11:27:56,068 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:56,068 426 | vector<_Tp, _Alloc>:: 2023-10-04T11:27:56,069 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:56,106 In file included from /usr/include/c++/10/vector:67, 2023-10-04T11:27:56,106 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:27:56,106 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_append(PyObject*, PyObject*, PyObject*)’: 2023-10-04T11:27:56,107 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:56,107 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:27:56,107 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:27:56,151 /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector > my_get_path(std::string, std::string, std::string, int)’: 2023-10-04T11:27:56,151 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:56,151 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:27:56,151 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:27:56,204 /usr/include/c++/10/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-10-04T11:27:56,205 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:56,205 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:27:56,205 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:27:56,205 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:56,205 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:27:56,205 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:27:56,281 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_push_back(PyObject*, PyObject*, PyObject*)’: 2023-10-04T11:27:56,281 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:56,282 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:27:56,282 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:27:56,383 In file included from /usr/include/c++/10/vector:72, 2023-10-04T11:27:56,383 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:27:56,383 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-10-04T11:27:56,383 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:56,384 171 | vector<_Tp, _Alloc>:: 2023-10-04T11:27:56,384 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:56,396 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-10-04T11:27:56,396 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:56,397 184 | vector<_Tp, _Alloc>:: 2023-10-04T11:27:56,397 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:56,397 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:56,429 In file included from /usr/include/c++/10/vector:67, 2023-10-04T11:27:56,430 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:27:56,430 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-10-04T11:27:56,430 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:56,430 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-04T11:27:56,430 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:56,430 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:56,431 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-04T11:27:56,431 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:56,431 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:56,431 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-04T11:27:56,431 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:56,521 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’: 2023-10-04T11:27:56,521 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:56,521 1665 | _M_range_insert(__pos, __first, __last, 2023-10-04T11:27:56,521 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:56,521 1666 | std::__iterator_category(__first)); 2023-10-04T11:27:56,521 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:56,522 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:56,522 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:56,522 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-04T11:27:56,522 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:56,522 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:56,522 1665 | _M_range_insert(__pos, __first, __last, 2023-10-04T11:27:56,523 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:56,523 1666 | std::__iterator_category(__first)); 2023-10-04T11:27:56,523 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:56,523 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:56,620 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector___delslice__(PyObject*, PyObject*, PyObject*)’: 2023-10-04T11:27:56,620 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:56,620 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-04T11:27:56,620 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:56,668 In file included from /usr/include/c++/10/vector:72, 2023-10-04T11:27:56,669 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:27:56,669 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Arg&&) [with _Arg = vrna_path_s; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-10-04T11:27:56,669 /usr/include/c++/10/bits/vector.tcc:395:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:56,669 395 | vector<_Tp, _Alloc>:: 2023-10-04T11:27:56,669 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:56,713 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-10-04T11:27:56,714 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:56,714 509 | vector<_Tp, _Alloc>:: 2023-10-04T11:27:56,714 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:58,920 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const duplex_list_t&}; _Tp = duplex_list_t; _Alloc = std::allocator]’: 2023-10-04T11:27:58,920 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:58,920 426 | vector<_Tp, _Alloc>:: 2023-10-04T11:27:58,920 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:59,027 In file included from /usr/include/c++/10/vector:67, 2023-10-04T11:27:59,028 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:27:59,028 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DuplexVector_append(PyObject*, PyObject*, PyObject*)’: 2023-10-04T11:27:59,028 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:59,028 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:27:59,028 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:27:59,108 /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector > my_duplex_subopt(std::string, std::string, int, int)’: 2023-10-04T11:27:59,108 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:59,108 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:27:59,108 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:27:59,231 /usr/include/c++/10/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-10-04T11:27:59,231 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:59,231 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:27:59,231 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:27:59,232 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:59,232 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:27:59,232 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:27:59,382 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DuplexVector_push_back(PyObject*, PyObject*, PyObject*)’: 2023-10-04T11:27:59,382 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:59,382 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:27:59,383 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:27:59,460 In file included from /usr/include/c++/10/vector:72, 2023-10-04T11:27:59,460 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:27:59,460 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’: 2023-10-04T11:27:59,461 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:59,461 171 | vector<_Tp, _Alloc>:: 2023-10-04T11:27:59,461 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:59,520 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’: 2023-10-04T11:27:59,521 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:59,521 184 | vector<_Tp, _Alloc>:: 2023-10-04T11:27:59,521 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:59,521 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:59,581 In file included from /usr/include/c++/10/vector:67, 2023-10-04T11:27:59,582 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:27:59,582 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-10-04T11:27:59,582 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:59,582 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-04T11:27:59,582 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:59,582 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:59,583 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-04T11:27:59,583 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:59,583 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:59,583 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-04T11:27:59,583 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:59,684 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’: 2023-10-04T11:27:59,685 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:59,685 1665 | _M_range_insert(__pos, __first, __last, 2023-10-04T11:27:59,685 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:59,685 1666 | std::__iterator_category(__first)); 2023-10-04T11:27:59,685 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:59,686 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:59,686 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:59,686 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-04T11:27:59,686 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:59,686 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:59,686 1665 | _M_range_insert(__pos, __first, __last, 2023-10-04T11:27:59,686 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:59,686 1666 | std::__iterator_category(__first)); 2023-10-04T11:27:59,687 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:59,687 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:59,804 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DuplexVector___delslice__(PyObject*, PyObject*, PyObject*)’: 2023-10-04T11:27:59,804 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:27:59,804 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-04T11:27:59,804 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:27:59,882 In file included from /usr/include/c++/10/vector:72, 2023-10-04T11:27:59,882 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:27:59,882 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Arg&&) [with _Arg = duplex_list_t; _Tp = duplex_list_t; _Alloc = std::allocator]’: 2023-10-04T11:27:59,882 /usr/include/c++/10/bits/vector.tcc:395:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:27:59,883 395 | vector<_Tp, _Alloc>:: 2023-10-04T11:27:59,883 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:00,078 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’: 2023-10-04T11:28:00,078 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:28:00,079 509 | vector<_Tp, _Alloc>:: 2023-10-04T11:28:00,079 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:05,923 In file included from /usr/include/c++/10/vector:67, 2023-10-04T11:28:05,924 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:28:05,924 /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector > my_aliduplex_subopt(std::vector, std::allocator > >, std::vector, std::allocator > >, int, int)’: 2023-10-04T11:28:05,924 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:05,924 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:28:05,924 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:28:06,226 In file included from /usr/include/c++/10/vector:72, 2023-10-04T11:28:06,227 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:28:06,227 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-10-04T11:28:06,227 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:28:06,227 426 | vector<_Tp, _Alloc>:: 2023-10-04T11:28:06,227 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:06,261 In file included from /usr/include/c++/10/algorithm:62, 2023-10-04T11:28:06,262 from interfaces/Python/RNA_wrap.cpp:4005: 2023-10-04T11:28:06,262 /usr/include/c++/10/bits/stl_algo.h: In function ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = std::back_insert_iterator > >; _UnaryOperation = double (*)(const double&)]’: 2023-10-04T11:28:06,262 /usr/include/c++/10/bits/stl_algo.h:4304:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:06,262 4304 | transform(_InputIterator __first, _InputIterator __last, 2023-10-04T11:28:06,262 | ^~~~~~~~~ 2023-10-04T11:28:06,262 /usr/include/c++/10/bits/stl_algo.h:4304:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:06,262 In file included from /usr/include/c++/10/vector:72, 2023-10-04T11:28:06,263 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:28:06,263 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:06,263 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-10-04T11:28:06,263 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:06,317 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector >, std::allocator > > > pfl_fold_up(std::string, int, int, int)’: 2023-10-04T11:28:06,318 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:06,318 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-10-04T11:28:06,318 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:06,318 In file included from /usr/include/c++/10/vector:67, 2023-10-04T11:28:06,318 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:28:06,319 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:06,319 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:28:06,319 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:28:07,399 In file included from /usr/include/c++/10/vector:72, 2023-10-04T11:28:07,399 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:28:07,400 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector > my_aln_conservation_col(std::vector, std::allocator > >, vrna_md_t*, unsigned int)’: 2023-10-04T11:28:07,400 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:07,400 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-10-04T11:28:07,400 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:07,457 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector > my_aln_conservation_struct(std::vector, std::allocator > >, std::string, vrna_md_t*)’: 2023-10-04T11:28:07,457 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:07,458 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-10-04T11:28:07,458 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:07,780 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_fold_compound_bpp(PyObject*, PyObject*)’: 2023-10-04T11:28:07,780 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:07,780 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-10-04T11:28:07,781 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:08,400 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-04T11:28:08,401 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval5’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:28:08,401 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-10-04T11:28:08,401 | ^ 2023-10-04T11:28:08,409 interfaces/Python/RNA_wrap.cpp:85814:26: note: ‘retval5’ was declared here 2023-10-04T11:28:08,409 85814 | vrna_pbacktrack_mem_t *retval5 ; 2023-10-04T11:28:08,409 | ^~~~~~~ 2023-10-04T11:28:09,123 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-04T11:28:09,124 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval4’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:28:09,124 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-10-04T11:28:09,124 | ^ 2023-10-04T11:28:09,131 interfaces/Python/RNA_wrap.cpp:85729:26: note: ‘retval4’ was declared here 2023-10-04T11:28:09,132 85729 | vrna_pbacktrack_mem_t *retval4 ; 2023-10-04T11:28:09,132 | ^~~~~~~ 2023-10-04T11:28:09,565 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-04T11:28:09,565 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval3’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:28:09,565 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-10-04T11:28:09,565 | ^ 2023-10-04T11:28:09,571 interfaces/Python/RNA_wrap.cpp:85652:26: note: ‘retval3’ was declared here 2023-10-04T11:28:09,572 85652 | vrna_pbacktrack_mem_t *retval3 ; 2023-10-04T11:28:09,572 | ^~~~~~~ 2023-10-04T11:28:11,890 In file included from /usr/include/c++/10/vector:67, 2023-10-04T11:28:11,890 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:28:11,890 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_fold_compound_path_direct(PyObject*, PyObject*, PyObject*)’: 2023-10-04T11:28:11,890 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:11,890 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:28:11,891 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:28:11,891 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:11,891 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:28:11,891 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:28:12,182 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_fold_compound_path_findpath(PyObject*, PyObject*, PyObject*)’: 2023-10-04T11:28:12,182 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:12,182 1198 | _M_realloc_insert(end(), __x); 2023-10-04T11:28:12,182 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-04T11:28:22,174 In file included from /usr/include/c++/10/vector:72, 2023-10-04T11:28:22,175 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:28:22,175 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = double]’: 2023-10-04T11:28:22,175 /usr/include/c++/10/bits/vector.tcc:354:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:22,175 354 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-10-04T11:28:22,175 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:22,176 /usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:22,176 356 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-10-04T11:28:22,176 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:22,532 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_sc_set_up(PyObject*, PyObject*, PyObject*)’: 2023-10-04T11:28:22,532 interfaces/Python/RNA_wrap.cpp:14372:106: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:22,532 14372 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-10-04T11:28:22,532 | ^ 2023-10-04T11:28:22,983 In file included from /usr/include/c++/10/vector:67, 2023-10-04T11:28:22,983 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:28:22,983 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_erase(PyObject*, PyObject*)’: 2023-10-04T11:28:22,983 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:22,984 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-04T11:28:22,984 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:22,985 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:22,985 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-04T11:28:22,986 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:23,236 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector___delitem__(PyObject*, PyObject*)’: 2023-10-04T11:28:23,236 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:23,236 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-04T11:28:23,236 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:23,363 In file included from /usr/include/c++/10/vector:72, 2023-10-04T11:28:23,363 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:28:23,363 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_DoubleVector_insert(PyObject*, PyObject*)’: 2023-10-04T11:28:23,363 /usr/include/c++/10/bits/vector.tcc:154:19: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:23,363 154 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-10-04T11:28:23,363 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:23,364 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:23,364 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-10-04T11:28:23,364 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:23,366 In file included from /usr/include/c++/10/vector:67, 2023-10-04T11:28:23,366 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:28:23,366 /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:23,366 1338 | _M_fill_insert(begin() + __offset, __n, __x); 2023-10-04T11:28:23,366 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:23,525 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_resize(PyObject*, PyObject*)’: 2023-10-04T11:28:23,525 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:23,525 960 | _M_fill_insert(end(), __new_size - size(), __x); 2023-10-04T11:28:23,525 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:23,637 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_sc_add_stack__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-04T11:28:23,637 interfaces/Python/RNA_wrap.cpp:14409:100: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:23,638 14409 | transform(energies.begin(), energies.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-10-04T11:28:23,638 | ^ 2023-10-04T11:28:23,799 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_sc_set_stack__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’: 2023-10-04T11:28:23,800 interfaces/Python/RNA_wrap.cpp:14377:106: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:23,800 14377 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-10-04T11:28:23,800 | ^ 2023-10-04T11:28:45,674 In file included from /usr/include/c++/10/vector:72, 2023-10-04T11:28:45,675 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:28:45,675 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {vrna_path_s}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-10-04T11:28:45,675 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:28:45,675 426 | vector<_Tp, _Alloc>:: 2023-10-04T11:28:45,675 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:45,750 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = vrna_path_s]’: 2023-10-04T11:28:45,750 /usr/include/c++/10/bits/vector.tcc:354:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:45,750 354 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-10-04T11:28:45,751 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:45,751 /usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:45,751 356 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-10-04T11:28:45,751 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:45,918 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_PathVector_insert(PyObject*, PyObject*)’: 2023-10-04T11:28:45,918 /usr/include/c++/10/bits/vector.tcc:154:19: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:45,918 154 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-10-04T11:28:45,918 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:45,919 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:45,919 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-10-04T11:28:45,919 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:45,921 In file included from /usr/include/c++/10/vector:67, 2023-10-04T11:28:45,921 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:28:45,921 /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:45,921 1338 | _M_fill_insert(begin() + __offset, __n, __x); 2023-10-04T11:28:45,921 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:46,093 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_resize(PyObject*, PyObject*)’: 2023-10-04T11:28:46,093 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:46,093 960 | _M_fill_insert(end(), __new_size - size(), __x); 2023-10-04T11:28:46,093 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:46,202 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_erase(PyObject*, PyObject*)’: 2023-10-04T11:28:46,202 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:46,202 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-04T11:28:46,202 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:46,204 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:46,204 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-04T11:28:46,204 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:46,457 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector___delitem__(PyObject*, PyObject*)’: 2023-10-04T11:28:46,457 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:46,457 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-04T11:28:46,457 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:50,867 In file included from /usr/include/c++/10/vector:72, 2023-10-04T11:28:50,867 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:28:50,867 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {duplex_list_t}; _Tp = duplex_list_t; _Alloc = std::allocator]’: 2023-10-04T11:28:50,867 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-04T11:28:50,867 426 | vector<_Tp, _Alloc>:: 2023-10-04T11:28:50,867 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:50,989 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = duplex_list_t]’: 2023-10-04T11:28:50,989 /usr/include/c++/10/bits/vector.tcc:354:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:50,989 354 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-10-04T11:28:50,989 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:50,990 /usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:50,990 356 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-10-04T11:28:50,990 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:51,188 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_DuplexVector_insert(PyObject*, PyObject*)’: 2023-10-04T11:28:51,188 /usr/include/c++/10/bits/vector.tcc:154:19: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:51,188 154 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-10-04T11:28:51,188 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:51,189 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:51,189 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-10-04T11:28:51,189 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:51,191 In file included from /usr/include/c++/10/vector:67, 2023-10-04T11:28:51,191 from interfaces/Python/RNA_wrap.cpp:4008: 2023-10-04T11:28:51,192 /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:51,192 1338 | _M_fill_insert(begin() + __offset, __n, __x); 2023-10-04T11:28:51,192 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:51,418 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DuplexVector_resize(PyObject*, PyObject*)’: 2023-10-04T11:28:51,418 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:51,418 960 | _M_fill_insert(end(), __new_size - size(), __x); 2023-10-04T11:28:51,418 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:51,544 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DuplexVector_erase(PyObject*, PyObject*)’: 2023-10-04T11:28:51,545 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:51,545 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-04T11:28:51,545 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:51,547 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:51,547 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-10-04T11:28:51,547 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:28:51,810 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DuplexVector___delitem__(PyObject*, PyObject*)’: 2023-10-04T11:28:51,810 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-04T11:28:51,810 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-10-04T11:28:51,810 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:29:38,248 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/2Dfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/2Dfold.o -fopenmp 2023-10-04T11:29:38,455 src/ViennaRNA/2Dfold.c: In function ‘vrna_mfe_TwoD’: 2023-10-04T11:29:38,456 src/ViennaRNA/2Dfold.c:325:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,456 325 | if ((d1 >= ((md->circ) ? matrices->k_min_Fc : matrices->k_min_F5[length])) 2023-10-04T11:29:38,456 | ^~ 2023-10-04T11:29:38,456 src/ViennaRNA/2Dfold.c:326:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,456 326 | && (d1 <= ((md->circ) ? matrices->k_max_Fc : matrices->k_max_F5[length]))) { 2023-10-04T11:29:38,457 | ^~ 2023-10-04T11:29:38,457 src/ViennaRNA/2Dfold.c:328:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,457 328 | d2 <= ((md->circ) ? matrices->l_max_Fc[d1] : matrices->l_max_F5[length][d1]); 2023-10-04T11:29:38,457 | ^~ 2023-10-04T11:29:38,457 src/ViennaRNA/2Dfold.c: In function ‘vrna_backtrack5_TwoD’: 2023-10-04T11:29:38,457 src/ViennaRNA/2Dfold.c:400:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,458 400 | if (j < vc->params->model_details.min_loop_size + 2) 2023-10-04T11:29:38,458 | ^ 2023-10-04T11:29:38,460 src/ViennaRNA/2Dfold.c: In function ‘mfe_linear’: 2023-10-04T11:29:38,461 src/ViennaRNA/2Dfold.c:596:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,461 596 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2023-10-04T11:29:38,461 | ^~ 2023-10-04T11:29:38,461 src/ViennaRNA/2Dfold.c:596:64: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,461 596 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2023-10-04T11:29:38,461 | ^~ 2023-10-04T11:29:38,464 src/ViennaRNA/2Dfold.c:712:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,464 712 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2023-10-04T11:29:38,464 | ^~ 2023-10-04T11:29:38,465 src/ViennaRNA/2Dfold.c:712:80: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,465 712 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2023-10-04T11:29:38,465 | ^~ 2023-10-04T11:29:38,471 src/ViennaRNA/2Dfold.c:1032:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,471 1032 | if (j > turn + 2) { 2023-10-04T11:29:38,472 | ^ 2023-10-04T11:29:38,482 src/ViennaRNA/2Dfold.c:1402:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,482 1402 | for (cnt1 = seq_length; cnt1 >= seq_length - turn - 1; cnt1--) { 2023-10-04T11:29:38,483 | ^~ 2023-10-04T11:29:38,488 src/ViennaRNA/2Dfold.c: In function ‘backtrack_f5’: 2023-10-04T11:29:38,488 src/ViennaRNA/2Dfold.c:1622:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,488 1622 | if (j < turn + 2) 2023-10-04T11:29:38,489 | ^ 2023-10-04T11:29:38,490 src/ViennaRNA/2Dfold.c:1648:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,490 1648 | } else if ((k >= da) && (l >= db)) { 2023-10-04T11:29:38,490 | ^~ 2023-10-04T11:29:38,491 src/ViennaRNA/2Dfold.c:1648:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,491 1648 | } else if ((k >= da) && (l >= db)) { 2023-10-04T11:29:38,491 | ^~ 2023-10-04T11:29:38,492 src/ViennaRNA/2Dfold.c:1650:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,492 1650 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2023-10-04T11:29:38,492 | ^~ 2023-10-04T11:29:38,493 src/ViennaRNA/2Dfold.c:1650:50: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,493 1650 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2023-10-04T11:29:38,493 | ^~ 2023-10-04T11:29:38,493 src/ViennaRNA/2Dfold.c:1651:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,494 1651 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2023-10-04T11:29:38,494 | ^~ 2023-10-04T11:29:38,494 src/ViennaRNA/2Dfold.c:1651:60: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,495 1651 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2023-10-04T11:29:38,495 | ^~ 2023-10-04T11:29:38,499 src/ViennaRNA/2Dfold.c:1756:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,499 1756 | } else if ((k >= d1a) && (l >= d1b)) { 2023-10-04T11:29:38,499 | ^~ 2023-10-04T11:29:38,500 src/ViennaRNA/2Dfold.c:1756:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,500 1756 | } else if ((k >= d1a) && (l >= d1b)) { 2023-10-04T11:29:38,500 | ^~ 2023-10-04T11:29:38,501 In file included from src/ViennaRNA/2Dfold.c:17: 2023-10-04T11:29:38,501 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,501 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,501 | ^ 2023-10-04T11:29:38,501 src/ViennaRNA/2Dfold.c:1757:23: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,502 1757 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2023-10-04T11:29:38,502 | ^~~~ 2023-10-04T11:29:38,502 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:38,502 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,502 | ^~~ 2023-10-04T11:29:38,502 src/ViennaRNA/2Dfold.c:1757:23: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,503 1757 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2023-10-04T11:29:38,503 | ^~~~ 2023-10-04T11:29:38,503 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,503 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,503 | ^ 2023-10-04T11:29:38,503 src/ViennaRNA/2Dfold.c:1760:25: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,503 1760 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2023-10-04T11:29:38,504 | ^~~~ 2023-10-04T11:29:38,504 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:38,504 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,504 | ^~~ 2023-10-04T11:29:38,504 src/ViennaRNA/2Dfold.c:1760:25: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,505 1760 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2023-10-04T11:29:38,505 | ^~~~ 2023-10-04T11:29:38,506 src/ViennaRNA/2Dfold.c: In function ‘backtrack_c’: 2023-10-04T11:29:38,507 src/ViennaRNA/2Dfold.c:1864:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,507 1864 | if ((unsigned int)base_d1 == k) 2023-10-04T11:29:38,507 | ^~ 2023-10-04T11:29:38,508 src/ViennaRNA/2Dfold.c:1865:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,508 1865 | if ((unsigned int)base_d2 == l) 2023-10-04T11:29:38,508 | ^~ 2023-10-04T11:29:38,510 src/ViennaRNA/2Dfold.c:1910:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,510 1910 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2023-10-04T11:29:38,511 | ^ 2023-10-04T11:29:38,511 src/ViennaRNA/2Dfold.c:1910:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,511 1910 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2023-10-04T11:29:38,512 | ^ 2023-10-04T11:29:38,516 src/ViennaRNA/2Dfold.c:2018:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,516 2018 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2023-10-04T11:29:38,516 | ^ 2023-10-04T11:29:38,517 src/ViennaRNA/2Dfold.c:2018:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,517 2018 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2023-10-04T11:29:38,517 | ^ 2023-10-04T11:29:38,525 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m’: 2023-10-04T11:29:38,526 src/ViennaRNA/2Dfold.c:2293:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,526 2293 | if (d1 <= k && d2 <= l) { 2023-10-04T11:29:38,526 | ^~ 2023-10-04T11:29:38,527 src/ViennaRNA/2Dfold.c:2293:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,527 2293 | if (d1 <= k && d2 <= l) { 2023-10-04T11:29:38,527 | ^~ 2023-10-04T11:29:38,528 src/ViennaRNA/2Dfold.c:2294:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,528 2294 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2023-10-04T11:29:38,528 | ^~ 2023-10-04T11:29:38,529 src/ViennaRNA/2Dfold.c:2294:63: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,529 2294 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2023-10-04T11:29:38,530 | ^~ 2023-10-04T11:29:38,531 src/ViennaRNA/2Dfold.c:2295:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,531 2295 | if ((l - d2 >= l_min_M[my_iindx[i + 1] - j][k - d1]) && 2023-10-04T11:29:38,531 | ^~ 2023-10-04T11:29:38,532 src/ViennaRNA/2Dfold.c:2296:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,532 2296 | (l - d2 <= l_max_M[my_iindx[i + 1] - j][k - d1])) { 2023-10-04T11:29:38,532 | ^~ 2023-10-04T11:29:38,533 src/ViennaRNA/2Dfold.c:2310:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,533 2310 | if (d1 <= k && d2 <= l) { 2023-10-04T11:29:38,533 | ^~ 2023-10-04T11:29:38,534 src/ViennaRNA/2Dfold.c:2310:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,535 2310 | if (d1 <= k && d2 <= l) { 2023-10-04T11:29:38,535 | ^~ 2023-10-04T11:29:38,536 src/ViennaRNA/2Dfold.c:2311:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,536 2311 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2023-10-04T11:29:38,536 | ^~ 2023-10-04T11:29:38,537 src/ViennaRNA/2Dfold.c:2311:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,537 2311 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2023-10-04T11:29:38,537 | ^~ 2023-10-04T11:29:38,538 src/ViennaRNA/2Dfold.c:2312:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,538 2312 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2023-10-04T11:29:38,538 | ^~ 2023-10-04T11:29:38,539 src/ViennaRNA/2Dfold.c:2312:62: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,539 2312 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2023-10-04T11:29:38,540 | ^~ 2023-10-04T11:29:38,543 src/ViennaRNA/2Dfold.c:2364:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,543 2364 | if (d1 <= k && d2 <= l) { 2023-10-04T11:29:38,544 | ^~ 2023-10-04T11:29:38,545 src/ViennaRNA/2Dfold.c:2364:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,545 2364 | if (d1 <= k && d2 <= l) { 2023-10-04T11:29:38,545 | ^~ 2023-10-04T11:29:38,546 In file included from src/ViennaRNA/2Dfold.c:17: 2023-10-04T11:29:38,546 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,546 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,546 | ^ 2023-10-04T11:29:38,546 src/ViennaRNA/2Dfold.c:2365:55: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,546 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-10-04T11:29:38,547 | ^~~~ 2023-10-04T11:29:38,547 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:38,547 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,547 | ^~~ 2023-10-04T11:29:38,548 src/ViennaRNA/2Dfold.c:2365:55: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,548 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-10-04T11:29:38,548 | ^~~~ 2023-10-04T11:29:38,549 src/ViennaRNA/2Dfold.c:2365:52: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,549 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-10-04T11:29:38,549 | ^~ 2023-10-04T11:29:38,550 In file included from src/ViennaRNA/2Dfold.c:17: 2023-10-04T11:29:38,550 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,550 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,550 | ^ 2023-10-04T11:29:38,550 src/ViennaRNA/2Dfold.c:2368:24: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,550 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-10-04T11:29:38,551 | ^~~~ 2023-10-04T11:29:38,551 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:38,551 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,551 | ^~~ 2023-10-04T11:29:38,552 src/ViennaRNA/2Dfold.c:2368:24: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,552 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-10-04T11:29:38,552 | ^~~~ 2023-10-04T11:29:38,553 src/ViennaRNA/2Dfold.c:2368:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,553 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-10-04T11:29:38,553 | ^~ 2023-10-04T11:29:38,554 src/ViennaRNA/2Dfold.c:2369:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,554 2369 | if ((k - d1 - cnt1 >= k_min_C[my_iindx[u + 1] - j]) && 2023-10-04T11:29:38,554 | ^~ 2023-10-04T11:29:38,555 src/ViennaRNA/2Dfold.c:2370:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,555 2370 | (k - d1 - cnt1 <= k_max_C[my_iindx[u + 1] - j])) { 2023-10-04T11:29:38,555 | ^~ 2023-10-04T11:29:38,556 src/ViennaRNA/2Dfold.c:2371:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,556 2371 | if ((l - d2 - cnt2 >= l_min_C[my_iindx[u + 1] - j][k - d1 - cnt1]) && 2023-10-04T11:29:38,556 | ^~ 2023-10-04T11:29:38,557 src/ViennaRNA/2Dfold.c:2372:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,557 2372 | (l - d2 - cnt2 <= l_max_C[my_iindx[u + 1] - j][k - d1 - cnt1])) { 2023-10-04T11:29:38,558 | ^~ 2023-10-04T11:29:38,560 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m1’: 2023-10-04T11:29:38,561 src/ViennaRNA/2Dfold.c:2492:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,561 2492 | if (d1 <= k && d2 <= l) { 2023-10-04T11:29:38,561 | ^~ 2023-10-04T11:29:38,562 src/ViennaRNA/2Dfold.c:2492:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,563 2492 | if (d1 <= k && d2 <= l) { 2023-10-04T11:29:38,563 | ^~ 2023-10-04T11:29:38,564 src/ViennaRNA/2Dfold.c:2493:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,564 2493 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2023-10-04T11:29:38,564 | ^~ 2023-10-04T11:29:38,565 src/ViennaRNA/2Dfold.c:2493:51: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,565 2493 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2023-10-04T11:29:38,565 | ^~ 2023-10-04T11:29:38,566 src/ViennaRNA/2Dfold.c:2494:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,566 2494 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2023-10-04T11:29:38,567 | ^~ 2023-10-04T11:29:38,568 src/ViennaRNA/2Dfold.c:2494:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,568 2494 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2023-10-04T11:29:38,568 | ^~ 2023-10-04T11:29:38,570 src/ViennaRNA/2Dfold.c: In function ‘backtrack_fc’: 2023-10-04T11:29:38,571 src/ViennaRNA/2Dfold.c:2614:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,572 2614 | if (u < turn) 2023-10-04T11:29:38,572 | ^ 2023-10-04T11:29:38,575 src/ViennaRNA/2Dfold.c:2668:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,575 2668 | if (u < turn) 2023-10-04T11:29:38,575 | ^ 2023-10-04T11:29:38,582 src/ViennaRNA/2Dfold.c:2778:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,582 2778 | if (seq_length > 2 * turn) { 2023-10-04T11:29:38,582 | ^ 2023-10-04T11:29:38,586 src/ViennaRNA/2Dfold.c:2863:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,587 2863 | if ((k == referenceBPs1[my_iindx[1] - seq_length]) && 2023-10-04T11:29:38,587 | ^~ 2023-10-04T11:29:38,588 src/ViennaRNA/2Dfold.c:2864:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,588 2864 | (l == referenceBPs2[my_iindx[1] - seq_length])) 2023-10-04T11:29:38,588 | ^~ 2023-10-04T11:29:38,591 src/ViennaRNA/2Dfold.c:2881:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,591 2881 | if (u < turn) 2023-10-04T11:29:38,591 | ^ 2023-10-04T11:29:38,594 src/ViennaRNA/2Dfold.c:2904:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,595 2904 | if ((k >= d1) && (l >= d2)) { 2023-10-04T11:29:38,595 | ^~ 2023-10-04T11:29:38,596 src/ViennaRNA/2Dfold.c:2904:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,596 2904 | if ((k >= d1) && (l >= d2)) { 2023-10-04T11:29:38,596 | ^~ 2023-10-04T11:29:38,597 src/ViennaRNA/2Dfold.c:2905:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,598 2905 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2023-10-04T11:29:38,598 | ^~ 2023-10-04T11:29:38,599 src/ViennaRNA/2Dfold.c:2905:56: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,599 2905 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2023-10-04T11:29:38,599 | ^~ 2023-10-04T11:29:38,600 src/ViennaRNA/2Dfold.c:2906:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,601 2906 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2023-10-04T11:29:38,601 | ^~ 2023-10-04T11:29:38,602 src/ViennaRNA/2Dfold.c:2906:66: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,602 2906 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2023-10-04T11:29:38,602 | ^~ 2023-10-04T11:29:38,605 src/ViennaRNA/2Dfold.c:2932:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,605 2932 | if (u < turn) 2023-10-04T11:29:38,605 | ^ 2023-10-04T11:29:38,610 src/ViennaRNA/2Dfold.c:2975:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,611 2975 | if ((k >= d1) && (l >= d2)) { 2023-10-04T11:29:38,611 | ^~ 2023-10-04T11:29:38,612 src/ViennaRNA/2Dfold.c:2975:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,612 2975 | if ((k >= d1) && (l >= d2)) { 2023-10-04T11:29:38,612 | ^~ 2023-10-04T11:29:38,614 In file included from src/ViennaRNA/2Dfold.c:17: 2023-10-04T11:29:38,614 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,614 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,614 | ^ 2023-10-04T11:29:38,614 src/ViennaRNA/2Dfold.c:2976:54: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,614 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-10-04T11:29:38,614 | ^~~~ 2023-10-04T11:29:38,615 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:38,616 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,616 | ^~~ 2023-10-04T11:29:38,616 src/ViennaRNA/2Dfold.c:2976:54: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,616 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-10-04T11:29:38,616 | ^~~~ 2023-10-04T11:29:38,617 src/ViennaRNA/2Dfold.c:2976:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,617 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-10-04T11:29:38,617 | ^~ 2023-10-04T11:29:38,619 In file included from src/ViennaRNA/2Dfold.c:17: 2023-10-04T11:29:38,619 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,619 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,619 | ^ 2023-10-04T11:29:38,619 src/ViennaRNA/2Dfold.c:2977:62: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,619 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-10-04T11:29:38,619 | ^~~~ 2023-10-04T11:29:38,620 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:38,620 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,621 | ^~~ 2023-10-04T11:29:38,621 src/ViennaRNA/2Dfold.c:2977:62: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,621 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-10-04T11:29:38,621 | ^~~~ 2023-10-04T11:29:38,622 src/ViennaRNA/2Dfold.c:2977:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,622 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-10-04T11:29:38,622 | ^~ 2023-10-04T11:29:38,623 src/ViennaRNA/2Dfold.c:2979:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,624 2979 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2023-10-04T11:29:38,624 | ^~ 2023-10-04T11:29:38,625 src/ViennaRNA/2Dfold.c:2979:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,625 2979 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2023-10-04T11:29:38,625 | ^~ 2023-10-04T11:29:38,627 src/ViennaRNA/2Dfold.c:2980:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,627 2980 | if ((l - d2 - cnt2 >= l_min_C[pq][k - d1 - cnt1]) && 2023-10-04T11:29:38,627 | ^~ 2023-10-04T11:29:38,628 src/ViennaRNA/2Dfold.c:2981:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,628 2981 | (l - d2 - cnt2 <= l_max_C[pq][k - d1 - cnt1])) { 2023-10-04T11:29:38,628 | ^~ 2023-10-04T11:29:38,630 src/ViennaRNA/2Dfold.c:3002:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,630 3002 | if (seq_length > 2 * turn) { 2023-10-04T11:29:38,630 | ^ 2023-10-04T11:29:38,633 src/ViennaRNA/2Dfold.c:3018:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,633 3018 | if ((k >= d1) && (l >= d2)) { 2023-10-04T11:29:38,634 | ^~ 2023-10-04T11:29:38,635 src/ViennaRNA/2Dfold.c:3018:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,635 3018 | if ((k >= d1) && (l >= d2)) { 2023-10-04T11:29:38,635 | ^~ 2023-10-04T11:29:38,636 In file included from src/ViennaRNA/2Dfold.c:17: 2023-10-04T11:29:38,636 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,637 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,637 | ^ 2023-10-04T11:29:38,637 src/ViennaRNA/2Dfold.c:3020:58: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,637 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-10-04T11:29:38,637 | ^~~~ 2023-10-04T11:29:38,638 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:38,638 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,638 | ^~~ 2023-10-04T11:29:38,638 src/ViennaRNA/2Dfold.c:3020:58: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,639 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-10-04T11:29:38,639 | ^~~~ 2023-10-04T11:29:38,640 src/ViennaRNA/2Dfold.c:3020:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,640 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-10-04T11:29:38,640 | ^~ 2023-10-04T11:29:38,641 In file included from src/ViennaRNA/2Dfold.c:17: 2023-10-04T11:29:38,642 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,642 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,642 | ^ 2023-10-04T11:29:38,642 src/ViennaRNA/2Dfold.c:3023:32: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,642 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-10-04T11:29:38,642 | ^~~~ 2023-10-04T11:29:38,643 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:38,643 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,643 | ^~~ 2023-10-04T11:29:38,644 src/ViennaRNA/2Dfold.c:3023:32: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,644 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-10-04T11:29:38,644 | ^~~~ 2023-10-04T11:29:38,645 src/ViennaRNA/2Dfold.c:3023:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,645 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-10-04T11:29:38,645 | ^~ 2023-10-04T11:29:38,646 src/ViennaRNA/2Dfold.c:3024:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,647 3024 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2023-10-04T11:29:38,647 | ^~ 2023-10-04T11:29:38,648 src/ViennaRNA/2Dfold.c:3024:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,648 3024 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2023-10-04T11:29:38,648 | ^~ 2023-10-04T11:29:38,650 src/ViennaRNA/2Dfold.c:3025:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,650 3025 | if ((l - d2 - cnt2 >= l_min_M2[i + 1][k - d1 - cnt1]) && 2023-10-04T11:29:38,650 | ^~ 2023-10-04T11:29:38,651 src/ViennaRNA/2Dfold.c:3026:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,651 3026 | (l - d2 - cnt2 <= l_max_M2[i + 1][k - d1 - cnt1])) { 2023-10-04T11:29:38,651 | ^~ 2023-10-04T11:29:38,657 In file included from src/ViennaRNA/2Dfold.c:17: 2023-10-04T11:29:38,657 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m2’: 2023-10-04T11:29:38,658 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,658 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,659 | ^ 2023-10-04T11:29:38,659 src/ViennaRNA/2Dfold.c:3173:41: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,659 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-10-04T11:29:38,659 | ^~~~ 2023-10-04T11:29:38,660 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:38,660 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,660 | ^~~ 2023-10-04T11:29:38,660 src/ViennaRNA/2Dfold.c:3173:41: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,661 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-10-04T11:29:38,661 | ^~~~ 2023-10-04T11:29:38,662 src/ViennaRNA/2Dfold.c:3173:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,662 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-10-04T11:29:38,662 | ^~ 2023-10-04T11:29:38,663 In file included from src/ViennaRNA/2Dfold.c:17: 2023-10-04T11:29:38,664 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,664 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,664 | ^ 2023-10-04T11:29:38,664 src/ViennaRNA/2Dfold.c:3174:49: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,664 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-10-04T11:29:38,664 | ^~~~ 2023-10-04T11:29:38,665 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:38,666 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:38,666 | ^~~ 2023-10-04T11:29:38,666 src/ViennaRNA/2Dfold.c:3174:49: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:38,666 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-10-04T11:29:38,666 | ^~~~ 2023-10-04T11:29:38,667 src/ViennaRNA/2Dfold.c:3174:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:38,667 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-10-04T11:29:38,667 | ^~ 2023-10-04T11:29:38,669 src/ViennaRNA/2Dfold.c:3175:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,669 3175 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2023-10-04T11:29:38,669 | ^~ 2023-10-04T11:29:38,671 src/ViennaRNA/2Dfold.c:3175:65: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,671 3175 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2023-10-04T11:29:38,671 | ^~ 2023-10-04T11:29:38,672 src/ViennaRNA/2Dfold.c:3176:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,672 3176 | if ((l - d2 - cnt2 >= l_min_M1[j3][k - d1 - cnt1]) && 2023-10-04T11:29:38,672 | ^~ 2023-10-04T11:29:38,674 src/ViennaRNA/2Dfold.c:3177:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,674 3177 | (l - d2 - cnt2 <= l_max_M1[j3][k - d1 - cnt1])) { 2023-10-04T11:29:38,674 | ^~ 2023-10-04T11:29:38,681 src/ViennaRNA/2Dfold.c: In function ‘mfe_circ’: 2023-10-04T11:29:38,683 src/ViennaRNA/2Dfold.c:3557:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,683 3557 | if (u < turn) 2023-10-04T11:29:38,683 | ^ 2023-10-04T11:29:38,690 src/ViennaRNA/2Dfold.c:3631:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,690 3631 | if (u < turn) 2023-10-04T11:29:38,691 | ^ 2023-10-04T11:29:38,704 src/ViennaRNA/2Dfold.c:3796:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:38,704 3796 | if (seq_length > 2 * turn) { 2023-10-04T11:29:38,704 | ^ 2023-10-04T11:29:47,525 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/2Dpfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/2Dpfold.o -fopenmp 2023-10-04T11:29:47,715 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear’: 2023-10-04T11:29:47,715 src/ViennaRNA/2Dpfold.c:431:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,715 431 | for (i = (j > turn ? (j - turn) : 1); i <= j; i++) { 2023-10-04T11:29:47,715 | ^ 2023-10-04T11:29:47,718 src/ViennaRNA/2Dpfold.c:583:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,718 583 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-04T11:29:47,719 | ^~ 2023-10-04T11:29:47,719 src/ViennaRNA/2Dpfold.c:583:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,719 583 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-04T11:29:47,719 | ^~ 2023-10-04T11:29:47,722 src/ViennaRNA/2Dpfold.c:666:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,722 666 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-10-04T11:29:47,722 | ^~ 2023-10-04T11:29:47,722 src/ViennaRNA/2Dpfold.c:666:78: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,722 666 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-10-04T11:29:47,722 | ^~ 2023-10-04T11:29:47,724 src/ViennaRNA/2Dpfold.c:796:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,725 796 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-04T11:29:47,725 | ^~ 2023-10-04T11:29:47,725 src/ViennaRNA/2Dpfold.c:796:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,725 796 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-04T11:29:47,725 | ^~ 2023-10-04T11:29:47,726 src/ViennaRNA/2Dpfold.c:828:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,726 828 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-04T11:29:47,727 | ^~ 2023-10-04T11:29:47,727 src/ViennaRNA/2Dpfold.c:828:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,727 828 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-04T11:29:47,727 | ^~ 2023-10-04T11:29:47,731 src/ViennaRNA/2Dpfold.c:952:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,731 952 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-04T11:29:47,731 | ^~ 2023-10-04T11:29:47,731 src/ViennaRNA/2Dpfold.c:952:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,731 952 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-04T11:29:47,731 | ^~ 2023-10-04T11:29:47,733 src/ViennaRNA/2Dpfold.c:991:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,733 991 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-10-04T11:29:47,733 | ^~ 2023-10-04T11:29:47,733 src/ViennaRNA/2Dpfold.c:991:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,734 991 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-10-04T11:29:47,734 | ^~ 2023-10-04T11:29:47,737 src/ViennaRNA/2Dpfold.c:1121:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,737 1121 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-04T11:29:47,737 | ^~ 2023-10-04T11:29:47,737 src/ViennaRNA/2Dpfold.c:1121:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,737 1121 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-10-04T11:29:47,737 | ^~ 2023-10-04T11:29:47,740 src/ViennaRNA/2Dpfold.c:1203:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,741 1203 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-10-04T11:29:47,741 | ^~ 2023-10-04T11:29:47,741 src/ViennaRNA/2Dpfold.c:1203:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,741 1203 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-10-04T11:29:47,741 | ^~ 2023-10-04T11:29:47,747 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_circ’: 2023-10-04T11:29:47,748 src/ViennaRNA/2Dpfold.c:1631:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,748 1631 | if (u < turn) 2023-10-04T11:29:47,748 | ^ 2023-10-04T11:29:47,756 src/ViennaRNA/2Dpfold.c:1849:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,757 1849 | if (seq_length > 2 * turn - 3) { 2023-10-04T11:29:47,757 | ^ 2023-10-04T11:29:47,770 src/ViennaRNA/2Dpfold.c: In function ‘vrna_pbacktrack5_TwoD’: 2023-10-04T11:29:47,771 src/ViennaRNA/2Dpfold.c:2300:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,771 2300 | if ((d1 == referenceBPs1[sn]) 2023-10-04T11:29:47,771 | ^~ 2023-10-04T11:29:47,772 src/ViennaRNA/2Dpfold.c:2301:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,772 2301 | && (d2 == referenceBPs2[sn])) { 2023-10-04T11:29:47,772 | ^~ 2023-10-04T11:29:47,773 src/ViennaRNA/2Dpfold.c:2312:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,774 2312 | if (d1 >= da && d2 >= db) { 2023-10-04T11:29:47,774 | ^~ 2023-10-04T11:29:47,775 src/ViennaRNA/2Dpfold.c:2312:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,775 2312 | if (d1 >= da && d2 >= db) { 2023-10-04T11:29:47,775 | ^~ 2023-10-04T11:29:47,776 src/ViennaRNA/2Dpfold.c:2314:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,776 2314 | (d1 - da >= k_min_Q[my_iindx[i + 1] - length]) 2023-10-04T11:29:47,776 | ^~ 2023-10-04T11:29:47,777 src/ViennaRNA/2Dpfold.c:2315:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,777 2315 | && (d1 - da <= k_max_Q[my_iindx[i + 1] - length])) { 2023-10-04T11:29:47,777 | ^~ 2023-10-04T11:29:47,778 src/ViennaRNA/2Dpfold.c:2317:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,779 2317 | (d2 - db >= l_min_Q[my_iindx[i + 1] - length][d1 - da]) 2023-10-04T11:29:47,779 | ^~ 2023-10-04T11:29:47,780 src/ViennaRNA/2Dpfold.c:2318:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,780 2318 | && (d2 - db <= l_max_Q[my_iindx[i + 1] - length][d1 - da])) 2023-10-04T11:29:47,780 | ^~ 2023-10-04T11:29:47,782 src/ViennaRNA/2Dpfold.c:2346:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,782 2346 | if ((d1 >= da) 2023-10-04T11:29:47,783 | ^~ 2023-10-04T11:29:47,783 src/ViennaRNA/2Dpfold.c:2347:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,784 2347 | && (d2 >= db) 2023-10-04T11:29:47,784 | ^~ 2023-10-04T11:29:47,785 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-10-04T11:29:47,785 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,785 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:47,786 | ^ 2023-10-04T11:29:47,786 src/ViennaRNA/2Dpfold.c:2351:26: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:47,786 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-10-04T11:29:47,786 | ^~~~ 2023-10-04T11:29:47,787 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:47,787 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:47,787 | ^~~ 2023-10-04T11:29:47,787 src/ViennaRNA/2Dpfold.c:2351:26: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:47,787 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-10-04T11:29:47,787 | ^~~~ 2023-10-04T11:29:47,788 src/ViennaRNA/2Dpfold.c:2351:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,788 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-10-04T11:29:47,788 | ^~ 2023-10-04T11:29:47,789 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-10-04T11:29:47,789 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,790 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:47,790 | ^ 2023-10-04T11:29:47,790 src/ViennaRNA/2Dpfold.c:2354:28: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:47,790 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-10-04T11:29:47,790 | ^~~~ 2023-10-04T11:29:47,791 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:47,791 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:47,791 | ^~~ 2023-10-04T11:29:47,791 src/ViennaRNA/2Dpfold.c:2354:28: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:47,791 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-10-04T11:29:47,791 | ^~~~ 2023-10-04T11:29:47,792 src/ViennaRNA/2Dpfold.c:2354:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,792 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-10-04T11:29:47,792 | ^~ 2023-10-04T11:29:47,793 src/ViennaRNA/2Dpfold.c:2356:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,793 2356 | if ((d1 - da - cnt1 >= k_min_Q[my_iindx[j + 1] - length]) 2023-10-04T11:29:47,794 | ^~ 2023-10-04T11:29:47,794 src/ViennaRNA/2Dpfold.c:2357:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,795 2357 | && (d1 - da - cnt1 <= k_max_Q[my_iindx[j + 1] - length])) { 2023-10-04T11:29:47,795 | ^~ 2023-10-04T11:29:47,796 src/ViennaRNA/2Dpfold.c:2358:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,796 2358 | if ((d2 - db - cnt2 >= l_min_Q[my_iindx[j + 1] - length][d1 - da - cnt1]) 2023-10-04T11:29:47,796 | ^~ 2023-10-04T11:29:47,797 src/ViennaRNA/2Dpfold.c:2359:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,797 2359 | && (d2 - db - cnt2 <= l_max_Q[my_iindx[j + 1] - length][d1 - da - cnt1])) { 2023-10-04T11:29:47,797 | ^~ 2023-10-04T11:29:47,799 src/ViennaRNA/2Dpfold.c:2383:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,799 2383 | if (d1 >= da && d2 >= db) { 2023-10-04T11:29:47,799 | ^~ 2023-10-04T11:29:47,800 src/ViennaRNA/2Dpfold.c:2383:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,800 2383 | if (d1 >= da && d2 >= db) { 2023-10-04T11:29:47,801 | ^~ 2023-10-04T11:29:47,803 src/ViennaRNA/2Dpfold.c: In function ‘pbacktrack_circ’: 2023-10-04T11:29:47,805 src/ViennaRNA/2Dpfold.c:2542:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,805 2542 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2023-10-04T11:29:47,805 | ^~ 2023-10-04T11:29:47,806 src/ViennaRNA/2Dpfold.c:2542:83: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,806 2542 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2023-10-04T11:29:47,806 | ^~ 2023-10-04T11:29:47,813 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcH’: 2023-10-04T11:29:47,814 src/ViennaRNA/2Dpfold.c:2746:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,814 2746 | if (((cnt1 + da) == d1) 2023-10-04T11:29:47,814 | ^~ 2023-10-04T11:29:47,815 src/ViennaRNA/2Dpfold.c:2747:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,815 2747 | && ((cnt2 + db) == d2)) { 2023-10-04T11:29:47,816 | ^~ 2023-10-04T11:29:47,828 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcI’: 2023-10-04T11:29:47,829 src/ViennaRNA/2Dpfold.c:3025:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,830 3025 | if (((cnt1 + cnt3 + da) == d1) 2023-10-04T11:29:47,830 | ^~ 2023-10-04T11:29:47,831 src/ViennaRNA/2Dpfold.c:3026:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,831 3026 | && ((cnt2 + cnt4 + db) == d2)) { 2023-10-04T11:29:47,831 | ^~ 2023-10-04T11:29:47,834 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcM’: 2023-10-04T11:29:47,836 src/ViennaRNA/2Dpfold.c:3211:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,836 3211 | if (((cnt1 + cnt3 + da) == d1) 2023-10-04T11:29:47,836 | ^~ 2023-10-04T11:29:47,837 src/ViennaRNA/2Dpfold.c:3212:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,837 3212 | && ((cnt2 + cnt4 + db) == d2)) { 2023-10-04T11:29:47,838 | ^~ 2023-10-04T11:29:47,843 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm2’: 2023-10-04T11:29:47,845 src/ViennaRNA/2Dpfold.c:3383:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,845 3383 | if (((cnt1 + cnt3 + da) == d1) 2023-10-04T11:29:47,845 | ^~ 2023-10-04T11:29:47,847 src/ViennaRNA/2Dpfold.c:3384:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,847 3384 | && ((cnt2 + cnt4 + db) == d2)) { 2023-10-04T11:29:47,847 | ^~ 2023-10-04T11:29:47,855 src/ViennaRNA/2Dpfold.c: In function ‘backtrack’: 2023-10-04T11:29:47,857 src/ViennaRNA/2Dpfold.c:3578:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,857 3578 | if ((da == d1) && (db == d2)) 2023-10-04T11:29:47,857 | ^~ 2023-10-04T11:29:47,859 src/ViennaRNA/2Dpfold.c:3578:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,859 3578 | if ((da == d1) && (db == d2)) 2023-10-04T11:29:47,859 | ^~ 2023-10-04T11:29:47,864 src/ViennaRNA/2Dpfold.c:3613:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,865 3613 | if (d1 >= da && d2 >= db) { 2023-10-04T11:29:47,865 | ^~ 2023-10-04T11:29:47,866 src/ViennaRNA/2Dpfold.c:3613:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,867 3613 | if (d1 >= da && d2 >= db) { 2023-10-04T11:29:47,867 | ^~ 2023-10-04T11:29:47,868 src/ViennaRNA/2Dpfold.c:3614:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,868 3614 | if ((d1 - da >= k_min_Q_B[my_iindx[k] - l]) && 2023-10-04T11:29:47,869 | ^~ 2023-10-04T11:29:47,870 src/ViennaRNA/2Dpfold.c:3615:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,870 3615 | (d1 - da <= k_max_Q_B[my_iindx[k] - l])) { 2023-10-04T11:29:47,870 | ^~ 2023-10-04T11:29:47,872 src/ViennaRNA/2Dpfold.c:3616:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,872 3616 | if ((d2 - db >= l_min_Q_B[my_iindx[k] - l][d1 - da]) && 2023-10-04T11:29:47,872 | ^~ 2023-10-04T11:29:47,874 src/ViennaRNA/2Dpfold.c:3617:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,874 3617 | (d2 - db <= l_max_Q_B[my_iindx[k] - l][d1 - da])) { 2023-10-04T11:29:47,874 | ^~ 2023-10-04T11:29:47,882 src/ViennaRNA/2Dpfold.c:3789:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,882 3789 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-10-04T11:29:47,882 | ^~ 2023-10-04T11:29:47,884 src/ViennaRNA/2Dpfold.c:3789:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,884 3789 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-10-04T11:29:47,885 | ^~ 2023-10-04T11:29:47,886 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-10-04T11:29:47,887 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,887 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:47,887 | ^ 2023-10-04T11:29:47,887 src/ViennaRNA/2Dpfold.c:3790:54: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:47,887 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-10-04T11:29:47,887 | ^~~~ 2023-10-04T11:29:47,889 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:47,889 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:47,889 | ^~~ 2023-10-04T11:29:47,889 src/ViennaRNA/2Dpfold.c:3790:54: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:47,889 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-10-04T11:29:47,889 | ^~~~ 2023-10-04T11:29:47,891 src/ViennaRNA/2Dpfold.c:3790:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,891 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-10-04T11:29:47,891 | ^~ 2023-10-04T11:29:47,893 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-10-04T11:29:47,893 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,893 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:47,893 | ^ 2023-10-04T11:29:47,893 src/ViennaRNA/2Dpfold.c:3792:26: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:47,894 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-04T11:29:47,894 | ^~~~ 2023-10-04T11:29:47,895 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:47,895 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:47,896 | ^~~ 2023-10-04T11:29:47,896 src/ViennaRNA/2Dpfold.c:3792:26: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:47,896 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-04T11:29:47,896 | ^~~~ 2023-10-04T11:29:47,897 src/ViennaRNA/2Dpfold.c:3792:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,898 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-04T11:29:47,898 | ^~ 2023-10-04T11:29:47,899 src/ViennaRNA/2Dpfold.c:3793:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,899 3793 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2023-10-04T11:29:47,900 | ^~ 2023-10-04T11:29:47,902 src/ViennaRNA/2Dpfold.c:3793:77: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,902 3793 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2023-10-04T11:29:47,902 | ^~ 2023-10-04T11:29:47,903 src/ViennaRNA/2Dpfold.c:3794:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,904 3794 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2023-10-04T11:29:47,904 | ^~ 2023-10-04T11:29:47,905 src/ViennaRNA/2Dpfold.c:3795:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,906 3795 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) 2023-10-04T11:29:47,906 | ^~ 2023-10-04T11:29:47,908 src/ViennaRNA/2Dpfold.c:3806:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,908 3806 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-10-04T11:29:47,908 | ^~ 2023-10-04T11:29:47,910 src/ViennaRNA/2Dpfold.c:3806:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,910 3806 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-10-04T11:29:47,910 | ^~ 2023-10-04T11:29:47,912 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-10-04T11:29:47,912 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,912 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:47,912 | ^ 2023-10-04T11:29:47,913 src/ViennaRNA/2Dpfold.c:3807:54: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:47,913 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-10-04T11:29:47,913 | ^~~~ 2023-10-04T11:29:47,914 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:47,914 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:47,915 | ^~~ 2023-10-04T11:29:47,915 src/ViennaRNA/2Dpfold.c:3807:54: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:47,915 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-10-04T11:29:47,915 | ^~~~ 2023-10-04T11:29:47,917 src/ViennaRNA/2Dpfold.c:3807:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,917 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-10-04T11:29:47,917 | ^~ 2023-10-04T11:29:47,919 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-10-04T11:29:47,919 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,919 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:47,919 | ^ 2023-10-04T11:29:47,919 src/ViennaRNA/2Dpfold.c:3809:26: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:47,919 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-04T11:29:47,919 | ^~~~ 2023-10-04T11:29:47,921 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:47,921 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:47,921 | ^~~ 2023-10-04T11:29:47,921 src/ViennaRNA/2Dpfold.c:3809:26: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:47,921 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-04T11:29:47,921 | ^~~~ 2023-10-04T11:29:47,923 src/ViennaRNA/2Dpfold.c:3809:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,923 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-04T11:29:47,923 | ^~ 2023-10-04T11:29:47,925 src/ViennaRNA/2Dpfold.c:3810:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,925 3810 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && 2023-10-04T11:29:47,925 | ^~ 2023-10-04T11:29:47,927 src/ViennaRNA/2Dpfold.c:3811:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,927 3811 | (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) { 2023-10-04T11:29:47,927 | ^~ 2023-10-04T11:29:47,929 src/ViennaRNA/2Dpfold.c:3812:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,929 3812 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2023-10-04T11:29:47,929 | ^~ 2023-10-04T11:29:47,931 src/ViennaRNA/2Dpfold.c:3813:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,931 3813 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) { 2023-10-04T11:29:47,931 | ^~ 2023-10-04T11:29:47,934 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm1’: 2023-10-04T11:29:47,936 src/ViennaRNA/2Dpfold.c:3940:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,937 3940 | if (d1 >= da && d2 >= db) { 2023-10-04T11:29:47,937 | ^~ 2023-10-04T11:29:47,939 src/ViennaRNA/2Dpfold.c:3940:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,939 3940 | if (d1 >= da && d2 >= db) { 2023-10-04T11:29:47,939 | ^~ 2023-10-04T11:29:47,941 src/ViennaRNA/2Dpfold.c:3941:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,941 3941 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2023-10-04T11:29:47,941 | ^~ 2023-10-04T11:29:47,943 src/ViennaRNA/2Dpfold.c:3941:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,943 3941 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2023-10-04T11:29:47,943 | ^~ 2023-10-04T11:29:47,945 src/ViennaRNA/2Dpfold.c:3942:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,945 3942 | if ((d2 - db >= l_min_Q_B[ii - l][d1 - da]) && 2023-10-04T11:29:47,945 | ^~ 2023-10-04T11:29:47,947 src/ViennaRNA/2Dpfold.c:3943:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,947 3943 | (d2 - db <= l_max_Q_B[ii - l][d1 - da])) { 2023-10-04T11:29:47,947 | ^~ 2023-10-04T11:29:47,956 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm’: 2023-10-04T11:29:47,958 src/ViennaRNA/2Dpfold.c:4157:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,958 4157 | if (d1 >= da2 && d2 >= db2) { 2023-10-04T11:29:47,958 | ^~ 2023-10-04T11:29:47,960 src/ViennaRNA/2Dpfold.c:4157:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,960 4157 | if (d1 >= da2 && d2 >= db2) { 2023-10-04T11:29:47,960 | ^~ 2023-10-04T11:29:47,962 src/ViennaRNA/2Dpfold.c:4158:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,962 4158 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2023-10-04T11:29:47,962 | ^~ 2023-10-04T11:29:47,965 src/ViennaRNA/2Dpfold.c:4158:69: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,965 4158 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2023-10-04T11:29:47,965 | ^~ 2023-10-04T11:29:47,967 src/ViennaRNA/2Dpfold.c:4159:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,967 4159 | if ((d2 - db2 >= l_min_Q_M1[jindx[j] + k][d1 - da2]) && 2023-10-04T11:29:47,967 | ^~ 2023-10-04T11:29:47,969 src/ViennaRNA/2Dpfold.c:4160:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,969 4160 | (d2 - db2 <= l_max_Q_M1[jindx[j] + k][d1 - da2])) { 2023-10-04T11:29:47,969 | ^~ 2023-10-04T11:29:47,971 src/ViennaRNA/2Dpfold.c:4173:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,971 4173 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2023-10-04T11:29:47,971 | ^~ 2023-10-04T11:29:47,974 src/ViennaRNA/2Dpfold.c:4173:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,974 4173 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2023-10-04T11:29:47,974 | ^~ 2023-10-04T11:29:47,976 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-10-04T11:29:47,976 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,976 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:47,976 | ^ 2023-10-04T11:29:47,976 src/ViennaRNA/2Dpfold.c:4175:26: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:47,977 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-10-04T11:29:47,977 | ^~~~ 2023-10-04T11:29:47,978 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:47,979 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:47,979 | ^~~ 2023-10-04T11:29:47,979 src/ViennaRNA/2Dpfold.c:4175:26: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:47,979 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-10-04T11:29:47,979 | ^~~~ 2023-10-04T11:29:47,981 src/ViennaRNA/2Dpfold.c:4175:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,981 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-10-04T11:29:47,981 | ^~ 2023-10-04T11:29:47,983 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-10-04T11:29:47,983 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,983 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:47,984 | ^ 2023-10-04T11:29:47,984 src/ViennaRNA/2Dpfold.c:4177:28: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:47,984 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-04T11:29:47,984 | ^~~~ 2023-10-04T11:29:47,986 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:29:47,986 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:29:47,986 | ^~~ 2023-10-04T11:29:47,986 src/ViennaRNA/2Dpfold.c:4177:28: note: in expansion of macro ‘MIN2’ 2023-10-04T11:29:47,986 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-04T11:29:47,987 | ^~~~ 2023-10-04T11:29:47,989 src/ViennaRNA/2Dpfold.c:4177:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:47,989 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-10-04T11:29:47,989 | ^~ 2023-10-04T11:29:47,991 src/ViennaRNA/2Dpfold.c:4178:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,991 4178 | if ((d1 - da - cnt1 >= k_min_Q_M1[jindx[j] + k]) && 2023-10-04T11:29:47,991 | ^~ 2023-10-04T11:29:47,993 src/ViennaRNA/2Dpfold.c:4179:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,994 4179 | (d1 - da - cnt1 <= k_max_Q_M1[jindx[j] + k])) { 2023-10-04T11:29:47,994 | ^~ 2023-10-04T11:29:47,996 src/ViennaRNA/2Dpfold.c:4180:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,996 4180 | if ((d2 - db - cnt2 >= l_min_Q_M1[jindx[j] + k][d1 - da - cnt1]) && 2023-10-04T11:29:47,996 | ^~ 2023-10-04T11:29:47,998 src/ViennaRNA/2Dpfold.c:4181:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:29:47,998 4181 | (d2 - db - cnt2 <= l_max_Q_M1[jindx[j] + k][d1 - da - cnt1])) { 2023-10-04T11:29:47,998 | ^~ 2023-10-04T11:29:48,002 src/ViennaRNA/2Dpfold.c:4212:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:48,002 4212 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2023-10-04T11:29:48,002 | ^~ 2023-10-04T11:29:48,005 src/ViennaRNA/2Dpfold.c:4212:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:48,005 4212 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2023-10-04T11:29:48,005 | ^~ 2023-10-04T11:29:53,705 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-10-04T11:29:53,706 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post_b’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:29:53,706 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-10-04T11:29:53,706 src/ViennaRNA/2Dpfold.c:467:57: note: ‘l_max_post_b’ was declared here 2023-10-04T11:29:53,706 467 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2023-10-04T11:29:53,707 | ^~~~~~~~~~~~ 2023-10-04T11:29:53,708 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post_b’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:29:53,708 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-10-04T11:29:53,708 src/ViennaRNA/2Dpfold.c:467:42: note: ‘l_min_post_b’ was declared here 2023-10-04T11:29:53,708 467 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2023-10-04T11:29:53,708 | ^~~~~~~~~~~~ 2023-10-04T11:29:53,709 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:29:53,709 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-10-04T11:29:53,709 src/ViennaRNA/2Dpfold.c:1041:49: note: ‘l_max_post’ was declared here 2023-10-04T11:29:53,710 1041 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2023-10-04T11:29:53,710 | ^~~~~~~~~~ 2023-10-04T11:29:53,711 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:29:53,711 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-10-04T11:29:53,711 src/ViennaRNA/2Dpfold.c:1041:36: note: ‘l_min_post’ was declared here 2023-10-04T11:29:53,711 1041 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2023-10-04T11:29:53,711 | ^~~~~~~~~~ 2023-10-04T11:29:53,712 src/ViennaRNA/2Dpfold.c:714:58: warning: ‘l_max_post_m1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:29:53,712 714 | int k_min_post_m1, k_max_post_m1, *l_min_post_m1, *l_max_post_m1; 2023-10-04T11:29:53,712 | ^~~~~~~~~~~~~ 2023-10-04T11:29:53,712 src/ViennaRNA/2Dpfold.c:714:42: warning: ‘l_min_post_m1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:29:53,712 714 | int k_min_post_m1, k_max_post_m1, *l_min_post_m1, *l_max_post_m1; 2023-10-04T11:29:53,712 | ^~~~~~~~~~~~~ 2023-10-04T11:29:53,713 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post_m’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:29:53,713 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-10-04T11:29:53,714 src/ViennaRNA/2Dpfold.c:711:55: note: ‘l_max_post_m’ was declared here 2023-10-04T11:29:53,714 711 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2023-10-04T11:29:53,714 | ^~~~~~~~~~~~ 2023-10-04T11:29:53,715 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post_m’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:29:53,715 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-10-04T11:29:53,715 src/ViennaRNA/2Dpfold.c:711:40: note: ‘l_min_post_m’ was declared here 2023-10-04T11:29:53,715 711 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2023-10-04T11:29:53,716 | ^~~~~~~~~~~~ 2023-10-04T11:29:57,335 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/LPfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/LPfold.o -fopenmp 2023-10-04T11:29:57,532 src/ViennaRNA/LPfold.c: In function ‘free_dp_matrices’: 2023-10-04T11:29:57,532 src/ViennaRNA/LPfold.c:514:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:29:57,532 514 | if (n > winSize + MAXLOOP) 2023-10-04T11:29:57,532 | ^ 2023-10-04T11:29:57,534 src/ViennaRNA/LPfold.c: In function ‘rotate_constraints’: 2023-10-04T11:29:57,535 src/ViennaRNA/LPfold.c:667:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:29:57,535 667 | if (j + 1 <= fc->length) { 2023-10-04T11:29:57,535 | ^~ 2023-10-04T11:30:00,588 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/Lfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/Lfold.o -fopenmp 2023-10-04T11:30:00,792 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/MEA.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/MEA.o -fopenmp 2023-10-04T11:30:00,995 src/ViennaRNA/MEA.c: In function ‘prune_sort’: 2023-10-04T11:30:00,995 src/ViennaRNA/MEA.c:321:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:00,996 321 | for (i = pc->i; i <= pc->j; i++) 2023-10-04T11:30:00,996 | ^~ 2023-10-04T11:30:00,996 src/ViennaRNA/MEA.c:342:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:00,996 342 | for (i = pc->i; i <= pc->j; i++) 2023-10-04T11:30:00,996 | ^~ 2023-10-04T11:30:00,996 src/ViennaRNA/MEA.c:349:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:00,996 349 | if (pc->i > n) 2023-10-04T11:30:00,997 | ^ 2023-10-04T11:30:00,997 src/ViennaRNA/MEA.c:358:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:00,997 358 | for (i = pc->i; i <= pc->j; i++) 2023-10-04T11:30:00,997 | ^~ 2023-10-04T11:30:01,506 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/ProfileAln.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ProfileAln.o -fopenmp 2023-10-04T11:30:02,192 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/ProfileDist.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ProfileDist.o -fopenmp 2023-10-04T11:30:02,426 src/ViennaRNA/ProfileDist.c: In function ‘PrfEditCost’: 2023-10-04T11:30:02,427 src/ViennaRNA/ProfileDist.c:199:10: warning: ‘dist’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:30:02,427 199 | return dist; 2023-10-04T11:30:02,427 | ^~~~ 2023-10-04T11:30:02,748 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/RNAstruct.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/RNAstruct.o -fopenmp 2023-10-04T11:30:02,868 src/ViennaRNA/RNAstruct.c: In function ‘b2Shapiro’: 2023-10-04T11:30:02,868 src/ViennaRNA/RNAstruct.c:302:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:30:02,868 302 | for (k = 0; k < strlen(tt); k++) 2023-10-04T11:30:02,868 | ^ 2023-10-04T11:30:02,869 src/ViennaRNA/RNAstruct.c:305:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:30:02,869 305 | for (k = 0; k < strlen(tt); k++) 2023-10-04T11:30:02,869 | ^ 2023-10-04T11:30:02,870 src/ViennaRNA/RNAstruct.c: In function ‘expand_Shapiro’: 2023-10-04T11:30:02,871 src/ViennaRNA/RNAstruct.c:445:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:30:02,871 445 | while (i < strlen(structure) - 1) { 2023-10-04T11:30:02,871 | ^ 2023-10-04T11:30:02,873 src/ViennaRNA/RNAstruct.c: In function ‘unexpand_aligned_F’: 2023-10-04T11:30:02,873 src/ViennaRNA/RNAstruct.c:599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:30:02,874 599 | for (i = 0, l = 0; i < strlen(align[0]); i++) { 2023-10-04T11:30:02,874 | ^ 2023-10-04T11:30:03,571 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/ali_plex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ali_plex.o -fopenmp 2023-10-04T11:30:03,769 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold’: 2023-10-04T11:30:03,770 src/ViennaRNA/ali_plex.c:230:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:30:03,770 230 | if (strlen(s1[s]) != n3) 2023-10-04T11:30:03,770 | ^~ 2023-10-04T11:30:03,770 src/ViennaRNA/ali_plex.c:233:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:30:03,770 233 | if (strlen(s2[s]) != n4) 2023-10-04T11:30:03,771 | ^~ 2023-10-04T11:30:03,776 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2023-10-04T11:30:03,777 src/ViennaRNA/ali_plex.c:509:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:30:03,777 509 | if (strlen(s1[s]) != n1) 2023-10-04T11:30:03,777 | ^~ 2023-10-04T11:30:03,777 src/ViennaRNA/ali_plex.c:512:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:30:03,777 512 | if (strlen(s2[s]) != n2) 2023-10-04T11:30:03,777 | ^~ 2023-10-04T11:30:05,131 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold_XS’: 2023-10-04T11:30:05,131 src/ViennaRNA/ali_plex.c:1032:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:30:05,131 1032 | if (strlen(s1[s]) != n3) 2023-10-04T11:30:05,131 | ^~ 2023-10-04T11:30:05,132 src/ViennaRNA/ali_plex.c:1035:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:30:05,132 1035 | if (strlen(s2[s]) != n4) 2023-10-04T11:30:05,132 | ^~ 2023-10-04T11:30:05,145 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-10-04T11:30:05,145 src/ViennaRNA/ali_plex.c:1347:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:30:05,145 1347 | if (strlen(s1[s]) != n1) 2023-10-04T11:30:05,145 | ^~ 2023-10-04T11:30:05,146 src/ViennaRNA/ali_plex.c:1350:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:30:05,146 1350 | if (strlen(s2[s]) != n2) 2023-10-04T11:30:05,146 | ^~ 2023-10-04T11:30:08,629 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2023-10-04T11:30:08,629 src/ViennaRNA/ali_plex.c:944:5: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:30:08,629 944 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-10-04T11:30:08,629 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:30:08,629 945 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-10-04T11:30:08,629 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:30:08,630 src/ViennaRNA/ali_plex.c:466:9: note: ‘max_pos_j’ was declared here 2023-10-04T11:30:08,630 466 | int max_pos_j; 2023-10-04T11:30:08,630 | ^~~~~~~~~ 2023-10-04T11:30:08,630 src/ViennaRNA/ali_plex.c:944:5: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:30:08,630 944 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-10-04T11:30:08,630 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:30:08,630 945 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-10-04T11:30:08,630 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:30:08,631 src/ViennaRNA/ali_plex.c:465:9: note: ‘max_pos’ was declared here 2023-10-04T11:30:08,631 465 | int max_pos; /* get position of the best hit */ 2023-10-04T11:30:08,631 | ^~~~~~~ 2023-10-04T11:30:08,631 src/ViennaRNA/ali_plex.c:787:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:30:08,631 787 | position_j[i + delta] = min_j_colonne; 2023-10-04T11:30:08,631 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-10-04T11:30:09,706 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-10-04T11:30:09,706 src/ViennaRNA/ali_plex.c:1812:5: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:30:09,706 1812 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-10-04T11:30:09,706 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:30:09,707 1813 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-10-04T11:30:09,707 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:30:09,707 src/ViennaRNA/ali_plex.c:1295:9: note: ‘max_pos_j’ was declared here 2023-10-04T11:30:09,707 1295 | int max_pos_j; 2023-10-04T11:30:09,707 | ^~~~~~~~~ 2023-10-04T11:30:09,708 src/ViennaRNA/ali_plex.c:1812:5: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:30:09,708 1812 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-10-04T11:30:09,708 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:30:09,708 1813 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-10-04T11:30:09,708 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:30:09,708 src/ViennaRNA/ali_plex.c:1294:9: note: ‘max_pos’ was declared here 2023-10-04T11:30:09,708 1294 | int max_pos; /* get position of the best hit */ 2023-10-04T11:30:09,708 | ^~~~~~~ 2023-10-04T11:30:09,709 src/ViennaRNA/ali_plex.c:1636:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:30:09,709 1636 | position_j[i + delta] = min_j_colonne; 2023-10-04T11:30:09,709 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-10-04T11:30:10,813 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/alifold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/alifold.o -fopenmp 2023-10-04T11:30:11,210 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/alipfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/alipfold.o -fopenmp 2023-10-04T11:30:11,405 src/ViennaRNA/alipfold.c: In function ‘wrap_alipf_fold’: 2023-10-04T11:30:11,405 src/ViennaRNA/alipfold.c:155:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:11,405 155 | for (n_seq = 0; n_seq < backward_compat_compound->n_seq; n_seq++) 2023-10-04T11:30:11,405 | ^ 2023-10-04T11:30:11,406 src/ViennaRNA/alipfold.c:166:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:11,406 166 | for (n_seq = 0; n_seq < vc->n_seq; n_seq++) { 2023-10-04T11:30:11,406 | ^ 2023-10-04T11:30:11,406 src/ViennaRNA/alipfold.c:169:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:11,406 169 | for (i = 1; i <= vc->length; i++) 2023-10-04T11:30:11,406 | ^~ 2023-10-04T11:30:11,638 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/alphabet.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/alphabet.o -fopenmp 2023-10-04T11:30:12,252 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/boltzmann_sampling.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/boltzmann_sampling.o -fopenmp 2023-10-04T11:30:12,473 In file included from src/ViennaRNA/boltzmann_sampling.c:29: 2023-10-04T11:30:12,473 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-10-04T11:30:12,474 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:12,474 224 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:30:12,474 | ^ 2023-10-04T11:30:12,474 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-10-04T11:30:12,474 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:12,474 265 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:12,475 | ^ 2023-10-04T11:30:12,475 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-10-04T11:30:12,475 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:12,475 320 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:12,475 | ^ 2023-10-04T11:30:12,475 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-10-04T11:30:12,476 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:12,476 385 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:30:12,476 | ^ 2023-10-04T11:30:12,476 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-10-04T11:30:12,476 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:12,476 414 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:12,477 | ^ 2023-10-04T11:30:12,477 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-10-04T11:30:12,477 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:12,477 463 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:12,477 | ^ 2023-10-04T11:30:12,480 In file included from src/ViennaRNA/boltzmann_sampling.c:30: 2023-10-04T11:30:12,480 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-10-04T11:30:12,481 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:12,481 73 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:12,481 | ^ 2023-10-04T11:30:12,481 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-10-04T11:30:12,481 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:12,481 112 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:12,481 | ^ 2023-10-04T11:30:12,482 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-10-04T11:30:12,482 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:12,482 143 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:12,482 | ^ 2023-10-04T11:30:12,482 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-10-04T11:30:12,482 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:12,483 185 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:12,483 | ^ 2023-10-04T11:30:12,483 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-10-04T11:30:12,483 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:12,483 224 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:12,483 | ^ 2023-10-04T11:30:12,488 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-10-04T11:30:12,488 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:12,488 730 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:12,488 | ^ 2023-10-04T11:30:12,489 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-10-04T11:30:12,489 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:12,489 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-10-04T11:30:12,489 | ^~ 2023-10-04T11:30:12,490 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-10-04T11:30:12,490 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:12,490 784 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:12,490 | ^ 2023-10-04T11:30:12,491 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-10-04T11:30:12,491 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:12,491 825 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:12,491 | ^ 2023-10-04T11:30:12,509 In file included from src/ViennaRNA/boltzmann_sampling.c:33: 2023-10-04T11:30:12,509 src/ViennaRNA/data_structures_nonred.inc: In function ‘free_all_nrll’: 2023-10-04T11:30:12,510 src/ViennaRNA/data_structures_nonred.inc:1153:7: warning: unused variable ‘i’ [-Wunused-variable] 2023-10-04T11:30:12,510 1153 | int i; 2023-10-04T11:30:12,510 | ^ 2023-10-04T11:30:15,711 src/ViennaRNA/boltzmann_sampling.c: In function ‘backtrack’: 2023-10-04T11:30:15,711 src/ViennaRNA/boltzmann_sampling.c:1306:25: warning: ‘type’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:30:15,712 1306 | q_temp *= exp_E_IntLoop(u1, 2023-10-04T11:30:15,712 | ^~~~~~~~~~~~~~~~~ 2023-10-04T11:30:15,712 1307 | u2, 2023-10-04T11:30:15,712 | ~~~ 2023-10-04T11:30:15,712 1308 | type, 2023-10-04T11:30:15,712 | ~~~~~ 2023-10-04T11:30:15,712 1309 | type_2, 2023-10-04T11:30:15,712 | ~~~~~~~ 2023-10-04T11:30:15,713 1310 | S1[i + 1], 2023-10-04T11:30:15,713 | ~~~~~~~~~~ 2023-10-04T11:30:15,713 1311 | S1[j - 1], 2023-10-04T11:30:15,713 | ~~~~~~~~~~ 2023-10-04T11:30:15,713 1312 | S1[k - 1], 2023-10-04T11:30:15,713 | ~~~~~~~~~~ 2023-10-04T11:30:15,713 1313 | S1[l + 1], 2023-10-04T11:30:15,713 | ~~~~~~~~~~ 2023-10-04T11:30:15,714 1314 | pf_params); 2023-10-04T11:30:15,714 | ~~~~~~~~~~ 2023-10-04T11:30:17,074 src/ViennaRNA/boltzmann_sampling.c: In function ‘vrna_pbacktrack_sub_resume_cb’: 2023-10-04T11:30:17,074 src/ViennaRNA/boltzmann_sampling.c:1659:32: warning: ‘type’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:30:17,074 1659 | q_temp *= exp_E_IntLoop(ln2 + ln3, 2023-10-04T11:30:17,074 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:30:17,074 1660 | ln1, 2023-10-04T11:30:17,075 | ~~~~ 2023-10-04T11:30:17,075 1661 | type2, 2023-10-04T11:30:17,075 | ~~~~~~ 2023-10-04T11:30:17,075 1662 | type, 2023-10-04T11:30:17,075 | ~~~~~ 2023-10-04T11:30:17,075 1663 | S1[l + 1], 2023-10-04T11:30:17,075 | ~~~~~~~~~~ 2023-10-04T11:30:17,076 1664 | S1[k - 1], 2023-10-04T11:30:17,076 | ~~~~~~~~~~ 2023-10-04T11:30:17,076 1665 | S1[i - 1], 2023-10-04T11:30:17,076 | ~~~~~~~~~~ 2023-10-04T11:30:17,076 1666 | S1[j + 1], 2023-10-04T11:30:17,076 | ~~~~~~~~~~ 2023-10-04T11:30:17,076 1667 | pf_params); 2023-10-04T11:30:17,076 | ~~~~~~~~~~ 2023-10-04T11:30:17,077 src/ViennaRNA/boltzmann_sampling.c:1524:25: note: ‘type’ was declared here 2023-10-04T11:30:17,077 1524 | unsigned int type, type2, *tt, s, n_seq, **a2s, u1_local, 2023-10-04T11:30:17,077 | ^~~~ 2023-10-04T11:30:17,715 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/bs_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/bs_wrappers.o -fopenmp 2023-10-04T11:30:18,053 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/c_plex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/c_plex.o -fopenmp 2023-10-04T11:30:18,248 src/ViennaRNA/c_plex.c: In function ‘duplexfold_CXS’: 2023-10-04T11:30:18,248 src/ViennaRNA/c_plex.c:358:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:30:18,248 358 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2023-10-04T11:30:18,249 | ^~~~~~~ 2023-10-04T11:30:18,266 src/ViennaRNA/c_plex.c: In function ‘find_max_CXS’: 2023-10-04T11:30:18,266 src/ViennaRNA/c_plex.c:942:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:30:18,266 942 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-10-04T11:30:18,266 | ^~ 2023-10-04T11:30:18,267 src/ViennaRNA/c_plex.c: In function ‘plot_max_CXS’: 2023-10-04T11:30:18,268 src/ViennaRNA/c_plex.c:993:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:30:18,268 993 | if (dL <= strlen(test.structure) - l1 - 1) 2023-10-04T11:30:18,268 | ^~ 2023-10-04T11:30:18,274 src/ViennaRNA/c_plex.c: In function ‘duplexfold_C’: 2023-10-04T11:30:18,274 src/ViennaRNA/c_plex.c:1014:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:30:18,275 1014 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-10-04T11:30:18,275 | ^~ 2023-10-04T11:30:18,294 src/ViennaRNA/c_plex.c: In function ‘find_max_C’: 2023-10-04T11:30:18,295 src/ViennaRNA/c_plex.c:1622:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:30:18,295 1622 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-10-04T11:30:18,295 | ^~ 2023-10-04T11:30:18,297 src/ViennaRNA/c_plex.c: In function ‘plot_max_C’: 2023-10-04T11:30:18,297 src/ViennaRNA/c_plex.c:1676:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:30:18,298 1676 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-10-04T11:30:18,298 | ^~ 2023-10-04T11:30:20,290 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2023-10-04T11:30:20,291 src/ViennaRNA/c_plex.c:978:73: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:30:20,291 978 | int end_q = MIN2(n2 - 9, max_pos_j + alignment_length - 2); 2023-10-04T11:30:20,291 | ^ 2023-10-04T11:30:20,291 src/ViennaRNA/c_plex.c:533:13: note: ‘max_pos_j’ was declared here 2023-10-04T11:30:20,291 533 | int max_pos_j; 2023-10-04T11:30:20,291 | ^~~~~~~~~ 2023-10-04T11:30:20,291 src/ViennaRNA/c_plex.c:979:72: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:30:20,291 979 | char *s3 = (char *)vrna_alloc(sizeof(char) * (end_t - begin_t + 2)); 2023-10-04T11:30:20,292 | ~~~~~~^~~~~~~~~ 2023-10-04T11:30:20,292 src/ViennaRNA/c_plex.c:532:13: note: ‘max_pos’ was declared here 2023-10-04T11:30:20,292 532 | int max_pos; /* get position of the best hit */ 2023-10-04T11:30:20,292 | ^~~~~~~ 2023-10-04T11:30:20,292 src/ViennaRNA/c_plex.c:801:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:30:20,292 801 | position_j[i + delta] = min_j_colonne; 2023-10-04T11:30:20,292 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-10-04T11:30:21,506 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_C’: 2023-10-04T11:30:21,506 src/ViennaRNA/c_plex.c:1660:55: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:30:21,507 1660 | int end_t = MIN2(n1 - 10, max_pos + 1); 2023-10-04T11:30:21,507 | ^ 2023-10-04T11:30:21,507 src/ViennaRNA/c_plex.c:1271:7: note: ‘max_pos’ was declared here 2023-10-04T11:30:21,507 1271 | int max_pos; /* get position of the best hit */ 2023-10-04T11:30:21,507 | ^~~~~~~ 2023-10-04T11:30:22,441 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/centroid.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/centroid.o -fopenmp 2023-10-04T11:30:22,870 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/cofold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/cofold.o -fopenmp 2023-10-04T11:30:23,209 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/combinatorics.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/combinatorics.o -fopenmp 2023-10-04T11:30:23,331 src/ViennaRNA/combinatorics.c: In function ‘sawada_fast’: 2023-10-04T11:30:23,331 src/ViennaRNA/combinatorics.c:729:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:23,332 729 | if (content[k - 1].count == n - t + 1) { 2023-10-04T11:30:23,332 | ^~ 2023-10-04T11:30:23,332 src/ViennaRNA/combinatorics.c:730:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:23,332 730 | if ((content[k - 1].count == r[t - p]) && (n % p == 0)) 2023-10-04T11:30:23,332 | ^~ 2023-10-04T11:30:23,332 src/ViennaRNA/combinatorics.c:732:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:23,333 732 | else if (content[k - 1].count > r[t - p]) 2023-10-04T11:30:23,333 | ^ 2023-10-04T11:30:23,333 src/ViennaRNA/combinatorics.c:734:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:23,333 734 | } else if (content[0].count != (n - t + 1)) { 2023-10-04T11:30:23,333 | ^~ 2023-10-04T11:30:23,885 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/commands.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/commands.o -fopenmp 2023-10-04T11:30:24,059 src/ViennaRNA/commands.c: In function ‘parse_constraints_line’: 2023-10-04T11:30:24,060 src/ViennaRNA/commands.c:822:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:30:24,060 822 | if (pp == strlen(buf)) { 2023-10-04T11:30:24,060 | ^~ 2023-10-04T11:30:24,060 src/ViennaRNA/commands.c:830:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:30:24,060 830 | if (pp == strlen(buf)) { 2023-10-04T11:30:24,060 | ^~ 2023-10-04T11:30:24,061 src/ViennaRNA/commands.c:840:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:30:24,061 840 | if (pp == strlen(buf)) { 2023-10-04T11:30:24,061 | ^~ 2023-10-04T11:30:24,061 src/ViennaRNA/commands.c:851:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:30:24,061 851 | if (pp == strlen(buf)) { 2023-10-04T11:30:24,061 | ^~ 2023-10-04T11:30:24,062 src/ViennaRNA/commands.c:857:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:30:24,062 857 | if (pp == strlen(buf)) { 2023-10-04T11:30:24,062 | ^~ 2023-10-04T11:30:24,062 src/ViennaRNA/commands.c:869:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:30:24,062 869 | if (pp == strlen(buf)) { 2023-10-04T11:30:24,062 | ^~ 2023-10-04T11:30:24,063 src/ViennaRNA/commands.c:886:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:30:24,063 886 | if (pp == strlen(buf)) { 2023-10-04T11:30:24,063 | ^~ 2023-10-04T11:30:24,063 src/ViennaRNA/commands.c:895:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:30:24,063 895 | if (pp == strlen(buf)) { 2023-10-04T11:30:24,063 | ^~ 2023-10-04T11:30:24,688 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/concentrations.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/concentrations.o -fopenmp 2023-10-04T11:30:24,857 src/ViennaRNA/concentrations.c:226:1: warning: ‘conc_complexes’ defined but not used [-Wunused-function] 2023-10-04T11:30:24,858 226 | conc_complexes(double *L, 2023-10-04T11:30:24,858 | ^~~~~~~~~~~~~~ 2023-10-04T11:30:25,004 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/SHAPE.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/SHAPE.o -fopenmp 2023-10-04T11:30:25,213 src/ViennaRNA/constraints/SHAPE.c: In function ‘vrna_sc_add_SHAPE_deigan’: 2023-10-04T11:30:25,214 src/ViennaRNA/constraints/SHAPE.c:327:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:25,214 327 | for (i = 1; i <= vc->length; ++i) 2023-10-04T11:30:25,214 | ^~ 2023-10-04T11:30:25,215 src/ViennaRNA/constraints/SHAPE.c: In function ‘vrna_sc_add_SHAPE_deigan_ali’: 2023-10-04T11:30:25,215 src/ViennaRNA/constraints/SHAPE.c:410:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:25,215 410 | for (i = 1; i <= vc->length; i++) 2023-10-04T11:30:25,215 | ^~ 2023-10-04T11:30:25,215 src/ViennaRNA/constraints/SHAPE.c:418:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:25,216 418 | } else if (position > vc->length) { 2023-10-04T11:30:25,216 | ^ 2023-10-04T11:30:25,216 src/ViennaRNA/constraints/SHAPE.c:456:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:25,216 456 | for (gaps = 0, i = 1; i <= vc->length; i++) { 2023-10-04T11:30:25,217 | ^~ 2023-10-04T11:30:25,753 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/constraints.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/constraints.o -fopenmp 2023-10-04T11:30:25,981 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/hard.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/hard.o -fopenmp 2023-10-04T11:30:26,158 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_up’: 2023-10-04T11:30:26,158 src/ViennaRNA/constraints/hard.c:303:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:26,158 303 | if ((i <= 0) || (i > fc->length)) { 2023-10-04T11:30:26,158 | ^ 2023-10-04T11:30:26,159 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_up_batch’: 2023-10-04T11:30:26,159 src/ViennaRNA/constraints/hard.c:375:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:26,159 375 | if ((pos <= 0) || (pos > fc->length)) 2023-10-04T11:30:26,159 | ^ 2023-10-04T11:30:26,160 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp_nonspecific’: 2023-10-04T11:30:26,160 src/ViennaRNA/constraints/hard.c:455:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:26,160 455 | if ((i <= 0) || (i > vc->length)) { 2023-10-04T11:30:26,161 | ^ 2023-10-04T11:30:26,161 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp_strand’: 2023-10-04T11:30:26,161 src/ViennaRNA/constraints/hard.c:513:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:26,161 513 | ((j - i - 1) < turn)) 2023-10-04T11:30:26,161 | ^ 2023-10-04T11:30:26,162 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp’: 2023-10-04T11:30:26,162 src/ViennaRNA/constraints/hard.c:549:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:26,162 549 | if ((i <= 0) || (j <= i) || (j > vc->length)) { 2023-10-04T11:30:26,162 | ^ 2023-10-04T11:30:26,164 src/ViennaRNA/constraints/hard.c: In function ‘default_pair_constraint’: 2023-10-04T11:30:26,164 src/ViennaRNA/constraints/hard.c:727:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:26,165 727 | (j < fc->length) && 2023-10-04T11:30:26,165 | ^ 2023-10-04T11:30:26,166 src/ViennaRNA/constraints/hard.c:760:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:26,166 760 | (j < fc->length) && 2023-10-04T11:30:26,167 | ^ 2023-10-04T11:30:26,181 src/ViennaRNA/constraints/hard.c: In function ‘populate_hc_bp’: 2023-10-04T11:30:26,182 src/ViennaRNA/constraints/hard.c:1076:51: warning: variable ‘turn’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:30:26,182 1076 | unsigned int max_span, maxdist, j, k, p, n, l, turn, strand, sj, sl, actual_i, actual_j, 2023-10-04T11:30:26,182 | ^~~~ 2023-10-04T11:30:26,186 In file included from src/ViennaRNA/constraints/hard.c:18: 2023-10-04T11:30:26,186 src/ViennaRNA/constraints/hard.c: In function ‘apply_DB_constraint’: 2023-10-04T11:30:26,187 src/ViennaRNA/utils/basic.h:111:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:26,187 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-10-04T11:30:26,187 | ^ 2023-10-04T11:30:26,187 src/ViennaRNA/constraints/hard.c:1656:24: note: in expansion of macro ‘MAX2’ 2023-10-04T11:30:26,187 1656 | for (l = MAX2(j + min_loop_size, cut); l <= length; l++) { 2023-10-04T11:30:26,187 | ^~~~ 2023-10-04T11:30:26,188 src/ViennaRNA/utils/basic.h:111:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:30:26,188 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-10-04T11:30:26,188 | ^~~ 2023-10-04T11:30:26,188 src/ViennaRNA/constraints/hard.c:1656:24: note: in expansion of macro ‘MAX2’ 2023-10-04T11:30:26,188 1656 | for (l = MAX2(j + min_loop_size, cut); l <= length; l++) { 2023-10-04T11:30:26,188 | ^~~~ 2023-10-04T11:30:26,189 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:26,189 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:30:26,190 | ^ 2023-10-04T11:30:26,190 src/ViennaRNA/constraints/hard.c:1670:31: note: in expansion of macro ‘MIN2’ 2023-10-04T11:30:26,190 1670 | for (l = 1; l < MIN2(cut, j - min_loop_size); l++) { 2023-10-04T11:30:26,190 | ^~~~ 2023-10-04T11:30:26,190 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:30:26,190 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:30:26,191 | ^~~ 2023-10-04T11:30:26,191 src/ViennaRNA/constraints/hard.c:1670:31: note: in expansion of macro ‘MIN2’ 2023-10-04T11:30:26,191 1670 | for (l = 1; l < MIN2(cut, j - min_loop_size); l++) { 2023-10-04T11:30:26,191 | ^~~~ 2023-10-04T11:30:26,191 src/ViennaRNA/constraints/hard.c:1695:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:26,192 1695 | for (l = 1; l < j; l++) { 2023-10-04T11:30:26,192 | ^ 2023-10-04T11:30:26,192 src/ViennaRNA/constraints/hard.c:1709:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:26,193 1709 | for (l = j + 1; l < cut; l++) { 2023-10-04T11:30:26,193 | ^ 2023-10-04T11:30:26,194 src/ViennaRNA/constraints/hard.c:1723:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:26,194 1723 | for (l = cut; l < j; l++) { 2023-10-04T11:30:26,194 | ^ 2023-10-04T11:30:26,195 src/ViennaRNA/constraints/hard.c:1779:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:26,195 1779 | for (i = 0; i < num_bp_unspecific; i++) 2023-10-04T11:30:26,196 | ^ 2023-10-04T11:30:26,197 src/ViennaRNA/constraints/hard.c:1786:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:26,197 1786 | for (i = 0; i < num_bp; i++) 2023-10-04T11:30:26,197 | ^ 2023-10-04T11:30:26,200 In file included from src/ViennaRNA/constraints/hard.c:18: 2023-10-04T11:30:26,200 src/ViennaRNA/constraints/hard.c: In function ‘hc_update_up’: 2023-10-04T11:30:26,201 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:26,201 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:30:26,201 | ^ 2023-10-04T11:30:26,201 src/ViennaRNA/constraints/hard.c:1873:29: note: in expansion of macro ‘MIN2’ 2023-10-04T11:30:26,201 1873 | hc->up_ext[i] = MIN2(n, 1 + hc->up_ext[i + 1]); 2023-10-04T11:30:26,202 | ^~~~ 2023-10-04T11:30:26,202 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:30:26,202 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:30:26,202 | ^~~ 2023-10-04T11:30:26,202 src/ViennaRNA/constraints/hard.c:1873:29: note: in expansion of macro ‘MIN2’ 2023-10-04T11:30:26,203 1873 | hc->up_ext[i] = MIN2(n, 1 + hc->up_ext[i + 1]); 2023-10-04T11:30:26,203 | ^~~~ 2023-10-04T11:30:26,203 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:26,203 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:30:26,204 | ^ 2023-10-04T11:30:26,204 src/ViennaRNA/constraints/hard.c:1883:28: note: in expansion of macro ‘MIN2’ 2023-10-04T11:30:26,204 1883 | hc->up_hp[i] = MIN2(n, 1 + hc->up_hp[i + 1]); 2023-10-04T11:30:26,204 | ^~~~ 2023-10-04T11:30:26,204 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:30:26,205 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:30:26,205 | ^~~ 2023-10-04T11:30:26,205 src/ViennaRNA/constraints/hard.c:1883:28: note: in expansion of macro ‘MIN2’ 2023-10-04T11:30:26,205 1883 | hc->up_hp[i] = MIN2(n, 1 + hc->up_hp[i + 1]); 2023-10-04T11:30:26,205 | ^~~~ 2023-10-04T11:30:26,206 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:26,206 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:30:26,206 | ^ 2023-10-04T11:30:26,206 src/ViennaRNA/constraints/hard.c:1893:29: note: in expansion of macro ‘MIN2’ 2023-10-04T11:30:26,206 1893 | hc->up_int[i] = MIN2(n, 1 + hc->up_int[i + 1]); 2023-10-04T11:30:26,206 | ^~~~ 2023-10-04T11:30:26,207 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:30:26,207 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:30:26,207 | ^~~ 2023-10-04T11:30:26,207 src/ViennaRNA/constraints/hard.c:1893:29: note: in expansion of macro ‘MIN2’ 2023-10-04T11:30:26,207 1893 | hc->up_int[i] = MIN2(n, 1 + hc->up_int[i + 1]); 2023-10-04T11:30:26,207 | ^~~~ 2023-10-04T11:30:26,208 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:26,208 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:30:26,208 | ^ 2023-10-04T11:30:26,208 src/ViennaRNA/constraints/hard.c:1903:28: note: in expansion of macro ‘MIN2’ 2023-10-04T11:30:26,209 1903 | hc->up_ml[i] = MIN2(n, 1 + hc->up_ml[i + 1]); 2023-10-04T11:30:26,209 | ^~~~ 2023-10-04T11:30:26,209 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:30:26,209 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:30:26,209 | ^~~ 2023-10-04T11:30:26,210 src/ViennaRNA/constraints/hard.c:1903:28: note: in expansion of macro ‘MIN2’ 2023-10-04T11:30:26,210 1903 | hc->up_ml[i] = MIN2(n, 1 + hc->up_ml[i + 1]); 2023-10-04T11:30:26,210 | ^~~~ 2023-10-04T11:30:28,592 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/ligand.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/ligand.o -fopenmp 2023-10-04T11:30:29,398 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/sc_cb_mod.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/sc_cb_mod.o -fopenmp 2023-10-04T11:30:29,550 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘vrna_sc_mod’: 2023-10-04T11:30:29,550 src/ViennaRNA/constraints/sc_cb_mod.c:479:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:29,550 479 | ((msite - j - 1) >= md->min_loop_size)) { 2023-10-04T11:30:29,551 | ^~ 2023-10-04T11:30:29,551 src/ViennaRNA/constraints/sc_cb_mod.c:482:42: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:29,551 482 | if (fc->sequence_encoding[j] == pp_enc) { 2023-10-04T11:30:29,551 | ^~ 2023-10-04T11:30:29,551 src/ViennaRNA/constraints/sc_cb_mod.c:493:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:29,551 493 | ((j - msite - 1) >= md->min_loop_size)) { 2023-10-04T11:30:29,551 | ^~ 2023-10-04T11:30:29,552 src/ViennaRNA/constraints/sc_cb_mod.c:496:42: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:29,552 496 | if (fc->sequence_encoding[j] == pp_enc) { 2023-10-04T11:30:29,552 | ^~ 2023-10-04T11:30:29,555 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_stacks’: 2023-10-04T11:30:29,555 src/ViennaRNA/constraints/sc_cb_mod.c:761:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:30:29,555 761 | char nt[MAX_ALPHABET] = { 2023-10-04T11:30:29,555 | ^~ 2023-10-04T11:30:29,557 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_mismatches’: 2023-10-04T11:30:29,557 src/ViennaRNA/constraints/sc_cb_mod.c:856:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:30:29,557 856 | char nt[MAX_ALPHABET] = { 2023-10-04T11:30:29,557 | ^~ 2023-10-04T11:30:29,560 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_dangles’: 2023-10-04T11:30:29,560 src/ViennaRNA/constraints/sc_cb_mod.c:985:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:30:29,560 985 | char nt[MAX_ALPHABET] = { 2023-10-04T11:30:29,560 | ^~ 2023-10-04T11:30:29,561 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_terminal’: 2023-10-04T11:30:29,561 src/ViennaRNA/constraints/sc_cb_mod.c:1149:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:30:29,562 1149 | char nt[MAX_ALPHABET] = { 2023-10-04T11:30:29,562 | ^~ 2023-10-04T11:30:31,335 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/sc_cb_mod_parser.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/sc_cb_mod_parser.o -fopenmp 2023-10-04T11:30:31,952 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/sc_cb_mod_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/sc_cb_mod_wrappers.o -fopenmp 2023-10-04T11:30:38,458 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/soft.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/soft.o -fopenmp 2023-10-04T11:30:38,638 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_bp’: 2023-10-04T11:30:38,638 src/ViennaRNA/constraints/soft.c:401:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:38,639 401 | (i > fc->length) || 2023-10-04T11:30:38,639 | ^ 2023-10-04T11:30:38,639 src/ViennaRNA/constraints/soft.c:403:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:38,639 403 | (j > fc->length)) { 2023-10-04T11:30:38,639 | ^ 2023-10-04T11:30:38,639 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_up’: 2023-10-04T11:30:38,640 src/ViennaRNA/constraints/soft.c:452:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:38,640 452 | if ((i < 1) || (i > fc->length)) { 2023-10-04T11:30:38,640 | ^ 2023-10-04T11:30:38,641 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_stack’: 2023-10-04T11:30:38,641 src/ViennaRNA/constraints/soft.c:547:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:38,642 547 | if ((i < 1) || (i > fc->length)) { 2023-10-04T11:30:38,642 | ^ 2023-10-04T11:30:38,642 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_stack_comparative’: 2023-10-04T11:30:38,642 src/ViennaRNA/constraints/soft.c:582:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:38,642 582 | if ((i < 1) || (i > fc->length)) { 2023-10-04T11:30:38,642 | ^ 2023-10-04T11:30:38,656 src/ViennaRNA/constraints/soft.c: In function ‘prepare_sc_stack_pf’: 2023-10-04T11:30:38,656 src/ViennaRNA/constraints/soft.c:1416:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:38,657 1416 | for (i = 0; i <= fc->length; ++i) 2023-10-04T11:30:38,657 | ^~ 2023-10-04T11:30:38,657 src/ViennaRNA/constraints/soft.c:1420:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:38,657 1420 | for (i = 1; i <= fc->length; ++i) 2023-10-04T11:30:38,657 | ^~ 2023-10-04T11:30:38,658 src/ViennaRNA/constraints/soft.c:1436:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:38,658 1436 | for (i = 0; i <= fc->a2s[s][fc->length]; i++) 2023-10-04T11:30:38,658 | ^~ 2023-10-04T11:30:38,659 src/ViennaRNA/constraints/soft.c:1440:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:38,659 1440 | for (i = 1; i <= fc->a2s[s][fc->length]; ++i) 2023-10-04T11:30:38,659 | ^~ 2023-10-04T11:30:39,903 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/soft_cb_multi.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/soft_cb_multi.o -fopenmp 2023-10-04T11:30:40,335 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/array.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/array.o -fopenmp 2023-10-04T11:30:40,505 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/basic_datastructures.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/basic_datastructures.o -fopenmp 2023-10-04T11:30:40,648 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/char_stream.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/char_stream.o -fopenmp 2023-10-04T11:30:40,785 src/ViennaRNA/datastructures/char_stream.c: In function ‘vrna_cstr_vprintf’: 2023-10-04T11:30:40,786 src/ViennaRNA/datastructures/char_stream.c:205:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:40,786 205 | if ((size_new > 0) && (l1 < SIZE_MAX) && ((SIZE_MAX - l1) > l2)) { 2023-10-04T11:30:40,786 | ^ 2023-10-04T11:30:40,786 src/ViennaRNA/datastructures/char_stream.c:205:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:40,786 205 | if ((size_new > 0) && (l1 < SIZE_MAX) && ((SIZE_MAX - l1) > l2)) { 2023-10-04T11:30:40,786 | ^ 2023-10-04T11:30:41,191 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/hash_tables.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/hash_tables.o -fopenmp 2023-10-04T11:30:41,331 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_get’: 2023-10-04T11:30:41,331 src/ViennaRNA/datastructures/hash_tables.c:126:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-04T11:30:41,331 126 | for (i = 0; i < entries->length; i++) { 2023-10-04T11:30:41,331 | ^ 2023-10-04T11:30:41,332 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_insert’: 2023-10-04T11:30:41,332 src/ViennaRNA/datastructures/hash_tables.c:157:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-04T11:30:41,332 157 | for (i = 0; i < entries->length; i++) { 2023-10-04T11:30:41,332 | ^ 2023-10-04T11:30:41,332 src/ViennaRNA/datastructures/hash_tables.c:165:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-04T11:30:41,332 165 | if (i >= entries->length) { 2023-10-04T11:30:41,332 | ^~ 2023-10-04T11:30:41,333 src/ViennaRNA/datastructures/hash_tables.c:166:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-04T11:30:41,333 166 | if (i >= entries->allocated_length) { 2023-10-04T11:30:41,333 | ^~ 2023-10-04T11:30:41,333 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_clear’: 2023-10-04T11:30:41,333 src/ViennaRNA/datastructures/hash_tables.c:204:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-04T11:30:41,333 204 | for (i = 0; i < entries->length; i++) { 2023-10-04T11:30:41,334 | ^ 2023-10-04T11:30:41,334 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_remove’: 2023-10-04T11:30:41,334 src/ViennaRNA/datastructures/hash_tables.c:249:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-04T11:30:41,334 249 | for (i = 0; i < entries->length; i++) { 2023-10-04T11:30:41,334 | ^ 2023-10-04T11:30:41,334 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_db_hash_func’: 2023-10-04T11:30:41,334 src/ViennaRNA/datastructures/hash_tables.c:339:7: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign] 2023-10-04T11:30:41,335 339 | k = ((vrna_ht_entry_db_t *)x)->structure; 2023-10-04T11:30:41,335 | ^ 2023-10-04T11:30:41,335 src/ViennaRNA/datastructures/hash_tables.c:340:39: warning: pointer targets in passing argument 1 of ‘strlen’ differ in signedness [-Wpointer-sign] 2023-10-04T11:30:41,335 340 | len = length = (unsigned int)strlen(k); 2023-10-04T11:30:41,335 | ^ 2023-10-04T11:30:41,335 | | 2023-10-04T11:30:41,335 | unsigned char * 2023-10-04T11:30:41,335 In file included from src/ViennaRNA/datastructures/hash_tables.c:6: 2023-10-04T11:30:41,336 /usr/include/string.h:385:35: note: expected ‘const char *’ but argument is of type ‘unsigned char *’ 2023-10-04T11:30:41,336 385 | extern size_t strlen (const char *__s) 2023-10-04T11:30:41,336 | ~~~~~~~~~~~~^~~ 2023-10-04T11:30:41,608 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/heap.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/heap.o -fopenmp 2023-10-04T11:30:42,027 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/lists.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/lists.o -fopenmp 2023-10-04T11:30:42,285 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/stream_output.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/stream_output.o -fopenmp 2023-10-04T11:30:42,571 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/string.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/string.o -fopenmp 2023-10-04T11:30:42,683 src/ViennaRNA/datastructures/string.c: In function ‘vrna_string_make_space_for’: 2023-10-04T11:30:42,684 src/ViennaRNA/datastructures/string.c:91:21: warning: variable ‘old_size’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:30:42,684 91 | size_t available, old_size, new_size; 2023-10-04T11:30:42,685 | ^~~~~~~~ 2023-10-04T11:30:42,791 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/dist_vars.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/dist_vars.o -fopenmp 2023-10-04T11:30:42,855 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/dp_matrices.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/dp_matrices.o -fopenmp 2023-10-04T11:30:44,491 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/duplex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/duplex.o -fopenmp 2023-10-04T11:30:44,698 src/ViennaRNA/duplex.c: In function ‘aliduplexfold_cu’: 2023-10-04T11:30:44,698 src/ViennaRNA/duplex.c:435:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:30:44,698 435 | if (strlen(s1[s]) != n1) 2023-10-04T11:30:44,698 | ^~ 2023-10-04T11:30:44,699 src/ViennaRNA/duplex.c:438:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:30:44,699 438 | if (strlen(s2[s]) != n2) 2023-10-04T11:30:44,699 | ^~ 2023-10-04T11:30:44,703 src/ViennaRNA/duplex.c: In function ‘aliduplex_subopt’: 2023-10-04T11:30:44,704 src/ViennaRNA/duplex.c:556:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:30:44,704 556 | if (strlen(s1[s]) != n1) 2023-10-04T11:30:44,704 | ^~ 2023-10-04T11:30:44,705 src/ViennaRNA/duplex.c:559:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:30:44,705 559 | if (strlen(s2[s]) != n2) 2023-10-04T11:30:44,705 | ^~ 2023-10-04T11:30:46,755 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/equilibrium_probs.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/equilibrium_probs.o -fopenmp 2023-10-04T11:30:47,007 In file included from src/ViennaRNA/equilibrium_probs.c:37: 2023-10-04T11:30:47,007 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-10-04T11:30:47,008 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,008 224 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:30:47,008 | ^ 2023-10-04T11:30:47,008 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-10-04T11:30:47,008 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,008 265 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:47,009 | ^ 2023-10-04T11:30:47,009 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-10-04T11:30:47,009 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,009 320 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:47,009 | ^ 2023-10-04T11:30:47,009 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-10-04T11:30:47,010 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,010 385 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:30:47,010 | ^ 2023-10-04T11:30:47,010 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-10-04T11:30:47,010 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,010 414 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:47,010 | ^ 2023-10-04T11:30:47,011 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-10-04T11:30:47,011 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,011 463 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:47,011 | ^ 2023-10-04T11:30:47,021 In file included from src/ViennaRNA/equilibrium_probs.c:39: 2023-10-04T11:30:47,022 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-10-04T11:30:47,022 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,022 73 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:47,022 | ^ 2023-10-04T11:30:47,022 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-10-04T11:30:47,023 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,023 112 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:47,023 | ^ 2023-10-04T11:30:47,023 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-10-04T11:30:47,023 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,023 143 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:47,023 | ^ 2023-10-04T11:30:47,024 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-10-04T11:30:47,024 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,024 185 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:47,024 | ^ 2023-10-04T11:30:47,024 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-10-04T11:30:47,024 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,024 224 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:47,025 | ^ 2023-10-04T11:30:47,028 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-10-04T11:30:47,029 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,029 730 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:47,029 | ^ 2023-10-04T11:30:47,030 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-10-04T11:30:47,030 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:47,030 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-10-04T11:30:47,030 | ^~ 2023-10-04T11:30:47,031 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-10-04T11:30:47,031 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,031 784 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:47,031 | ^ 2023-10-04T11:30:47,032 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-10-04T11:30:47,032 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,032 825 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:30:47,032 | ^ 2023-10-04T11:30:47,051 src/ViennaRNA/equilibrium_probs.c: In function ‘vrna_ensemble_defect_pt’: 2023-10-04T11:30:47,051 src/ViennaRNA/equilibrium_probs.c:406:14: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:47,051 406 | (pt[0] == fc->length) && 2023-10-04T11:30:47,051 | ^~ 2023-10-04T11:30:47,052 src/ViennaRNA/equilibrium_probs.c:428:22: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:47,052 428 | else if (pt[i] > i) 2023-10-04T11:30:47,052 | ^ 2023-10-04T11:30:47,060 src/ViennaRNA/equilibrium_probs.c: In function ‘get_ml_helper_arrays’: 2023-10-04T11:30:47,060 src/ViennaRNA/equilibrium_probs.c:958:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,060 958 | for (u = 0; u < domains_up->uniq_motif_count; u++) 2023-10-04T11:30:47,060 | ^ 2023-10-04T11:30:47,061 src/ViennaRNA/equilibrium_probs.c:959:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:47,061 959 | if (ml_helpers->ud_max_size < domains_up->uniq_motif_size[u]) 2023-10-04T11:30:47,061 | ^ 2023-10-04T11:30:47,061 src/ViennaRNA/equilibrium_probs.c:965:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,061 965 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-10-04T11:30:47,061 | ^~ 2023-10-04T11:30:47,062 src/ViennaRNA/equilibrium_probs.c:971:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,062 971 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-10-04T11:30:47,062 | ^~ 2023-10-04T11:30:47,062 src/ViennaRNA/equilibrium_probs.c: In function ‘free_ml_helper_arrays’: 2023-10-04T11:30:47,062 src/ViennaRNA/equilibrium_probs.c:989:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,062 989 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-10-04T11:30:47,063 | ^~ 2023-10-04T11:30:47,063 src/ViennaRNA/equilibrium_probs.c: In function ‘rotate_ml_helper_arrays_outer’: 2023-10-04T11:30:47,063 src/ViennaRNA/equilibrium_probs.c:1019:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,063 1019 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-10-04T11:30:47,064 | ^~ 2023-10-04T11:30:47,093 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_update_Y5’: 2023-10-04T11:30:47,093 src/ViennaRNA/equilibrium_probs.c:2281:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,094 2281 | if ((se[s] < l) && 2023-10-04T11:30:47,094 | ^ 2023-10-04T11:30:47,097 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_update_Y3’: 2023-10-04T11:30:47,098 src/ViennaRNA/equilibrium_probs.c:2391:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,098 2391 | if (start == l + 1) { 2023-10-04T11:30:47,099 | ^~ 2023-10-04T11:30:47,102 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_contrib’: 2023-10-04T11:30:47,103 src/ViennaRNA/equilibrium_probs.c:2505:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,103 2505 | else if (start == l + 1) 2023-10-04T11:30:47,103 | ^~ 2023-10-04T11:30:47,104 src/ViennaRNA/equilibrium_probs.c:2507:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:30:47,104 2507 | else if ((start > l + 1) && 2023-10-04T11:30:47,104 | ^ 2023-10-04T11:30:47,106 src/ViennaRNA/equilibrium_probs.c:2475:27: warning: variable ‘sc_split’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:30:47,107 2475 | sc_ext_exp_split sc_split; 2023-10-04T11:30:47,107 | ^~~~~~~~ 2023-10-04T11:30:47,122 src/ViennaRNA/equilibrium_probs.c: In function ‘ud_outside_mb_loops’: 2023-10-04T11:30:47,123 src/ViennaRNA/equilibrium_probs.c:3147:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:47,123 3147 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-10-04T11:30:47,123 | ^ 2023-10-04T11:30:47,138 src/ViennaRNA/equilibrium_probs.c: In function ‘ud_outside_mb_loops2’: 2023-10-04T11:30:47,140 src/ViennaRNA/equilibrium_probs.c:3443:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:47,140 3443 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-10-04T11:30:47,140 | ^ 2023-10-04T11:30:56,890 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/eval.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval.o -fopenmp 2023-10-04T11:30:57,131 src/ViennaRNA/eval.c: In function ‘energy_of_extLoop_pt’: 2023-10-04T11:30:57,131 src/ViennaRNA/eval.c:663:34: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:57,131 663 | if ((pt[i] != 0) && (pt[i] > i)) { 2023-10-04T11:30:57,131 | ^ 2023-10-04T11:30:57,136 src/ViennaRNA/eval.c: In function ‘energy_of_ext_loop_components’: 2023-10-04T11:30:57,137 src/ViennaRNA/eval.c:929:19: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:57,137 929 | if (pt[i] > i) { 2023-10-04T11:30:57,137 | ^ 2023-10-04T11:30:57,147 src/ViennaRNA/eval.c: In function ‘energy_of_ml_pt’: 2023-10-04T11:30:57,148 src/ViennaRNA/eval.c:1683:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:57,148 1683 | for (ss = 0; ss < n_seq; ss++) 2023-10-04T11:30:57,148 | ^ 2023-10-04T11:30:57,150 src/ViennaRNA/eval.c:1721:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:57,150 1721 | for (ss = 0; ss < n_seq; ss++) { 2023-10-04T11:30:57,150 | ^ 2023-10-04T11:30:57,151 src/ViennaRNA/eval.c:1729:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:57,151 1729 | for (ss = 0; ss < n_seq; ss++) 2023-10-04T11:30:57,151 | ^ 2023-10-04T11:30:57,153 src/ViennaRNA/eval.c:1751:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:57,153 1751 | for (ss = 0; ss < n_seq; ss++) { 2023-10-04T11:30:57,153 | ^ 2023-10-04T11:30:57,154 src/ViennaRNA/eval.c:1766:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:57,154 1766 | for (ss = 0; ss < n_seq; ss++) { 2023-10-04T11:30:57,154 | ^ 2023-10-04T11:30:57,155 src/ViennaRNA/eval.c:1774:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:57,155 1774 | for (ss = 0; ss < n_seq; ss++) 2023-10-04T11:30:57,155 | ^ 2023-10-04T11:30:57,156 src/ViennaRNA/eval.c:1782:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:57,156 1782 | for (ss = 0; ss < n_seq; ss++) { 2023-10-04T11:30:57,156 | ^ 2023-10-04T11:30:57,158 src/ViennaRNA/eval.c:1834:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:57,158 1834 | for (ss = 0; ss < n_seq; ss++) { 2023-10-04T11:30:57,158 | ^ 2023-10-04T11:30:57,159 src/ViennaRNA/eval.c:1851:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:57,160 1851 | for (ss = 0; ss < n_seq; ss++) { 2023-10-04T11:30:57,160 | ^ 2023-10-04T11:30:57,161 src/ViennaRNA/eval.c:1859:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:57,161 1859 | for (ss = 0; ss < n_seq; ss++) 2023-10-04T11:30:57,161 | ^ 2023-10-04T11:30:57,162 src/ViennaRNA/eval.c:1866:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:57,162 1866 | for (ss = 0; ss < n_seq; ss++) { 2023-10-04T11:30:57,162 | ^ 2023-10-04T11:30:57,164 src/ViennaRNA/eval.c:1945:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:57,164 1945 | while (p <= (unsigned int)pt[0] && pt[p] == 0) 2023-10-04T11:30:57,165 | ^~ 2023-10-04T11:30:57,166 src/ViennaRNA/eval.c:1956:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:57,167 1956 | if (p == (unsigned int)pt[0] + 1) { 2023-10-04T11:30:57,167 | ^~ 2023-10-04T11:30:57,168 src/ViennaRNA/eval.c:1972:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:57,168 1972 | if ((sn[i1] == sn[i1 + 1]) && (i1 < (unsigned int)s[0])) 2023-10-04T11:30:57,168 | ^ 2023-10-04T11:30:57,170 src/ViennaRNA/eval.c:2020:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:30:57,170 2020 | if (i == (unsigned int)pt[p]) 2023-10-04T11:30:57,170 | ^~ 2023-10-04T11:30:57,982 src/ViennaRNA/eval.c: In function ‘en_corr_of_loop_gquad’: 2023-10-04T11:30:57,983 src/ViennaRNA/eval.c:1092:51: warning: ‘elem_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:30:57,983 1092 | L, l[3], num_elem, num_g, elem_i, elem_j, 2023-10-04T11:30:57,983 | ^~~~~~ 2023-10-04T11:30:57,983 src/ViennaRNA/eval.c:1092:43: warning: ‘elem_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:30:57,984 1092 | L, l[3], num_elem, num_g, elem_i, elem_j, 2023-10-04T11:30:57,984 | ^~~~~~ 2023-10-04T11:30:59,985 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/eval_covariance.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval_covariance.o -fopenmp 2023-10-04T11:31:00,360 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/eval_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval_wrappers.o -fopenmp 2023-10-04T11:31:01,066 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/fold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/fold.o -fopenmp 2023-10-04T11:31:01,741 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/fold_compound.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/fold_compound.o -fopenmp 2023-10-04T11:31:01,946 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_free’: 2023-10-04T11:31:01,946 src/ViennaRNA/fold_compound.c:137:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:01,946 137 | for (s = 0; s < fc->n_seq; s++) { 2023-10-04T11:31:01,947 | ^ 2023-10-04T11:31:01,947 src/ViennaRNA/fold_compound.c:156:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:01,947 156 | for (s = 0; s < fc->n_seq; s++) 2023-10-04T11:31:01,947 | ^ 2023-10-04T11:31:01,949 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_comparative2’: 2023-10-04T11:31:01,949 src/ViennaRNA/fold_compound.c:311:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:01,949 311 | } else if (length > vrna_sequence_length_max(options)) { 2023-10-04T11:31:01,949 | ^ 2023-10-04T11:31:01,950 src/ViennaRNA/fold_compound.c:318:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:31:01,950 318 | if (strlen(sequences[s]) != length) { 2023-10-04T11:31:01,950 | ^~ 2023-10-04T11:31:01,950 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_TwoD’: 2023-10-04T11:31:01,951 src/ViennaRNA/fold_compound.c:417:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:01,951 417 | } else if (length > vrna_sequence_length_max(options)) { 2023-10-04T11:31:01,951 | ^ 2023-10-04T11:31:02,585 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/gquad.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/gquad.o -fopenmp 2023-10-04T11:31:02,788 In file included from src/ViennaRNA/gquad.c:21: 2023-10-04T11:31:02,788 src/ViennaRNA/gquad.c: In function ‘get_gquad_pf_matrix_comparative’: 2023-10-04T11:31:02,788 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:02,789 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:31:02,789 | ^ 2023-10-04T11:31:02,789 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-10-04T11:31:02,789 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-10-04T11:31:02,789 | ^~~~ 2023-10-04T11:31:02,789 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-10-04T11:31:02,789 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-10-04T11:31:02,789 | ^~~~~~~~~~~~~~ 2023-10-04T11:31:02,790 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:31:02,790 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:31:02,790 | ^~~ 2023-10-04T11:31:02,790 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-10-04T11:31:02,790 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-10-04T11:31:02,790 | ^~~~ 2023-10-04T11:31:02,790 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-10-04T11:31:02,791 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-10-04T11:31:02,791 | ^~~~~~~~~~~~~~ 2023-10-04T11:31:02,791 src/ViennaRNA/gquad.c:40:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:02,791 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-10-04T11:31:02,791 | ^~ 2023-10-04T11:31:02,791 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-10-04T11:31:02,791 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-10-04T11:31:02,791 | ^~~~~~~~~~~~~~ 2023-10-04T11:31:02,792 In file included from src/ViennaRNA/gquad.c:21: 2023-10-04T11:31:02,792 src/ViennaRNA/gquad.c: In function ‘get_gquad_ali_matrix’: 2023-10-04T11:31:02,792 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:02,792 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:31:02,792 | ^ 2023-10-04T11:31:02,792 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-10-04T11:31:02,792 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-10-04T11:31:02,793 | ^~~~ 2023-10-04T11:31:02,793 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-10-04T11:31:02,793 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-10-04T11:31:02,793 | ^~~~~~~~~~~~~~ 2023-10-04T11:31:02,793 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:31:02,793 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:31:02,793 | ^~~ 2023-10-04T11:31:02,793 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-10-04T11:31:02,794 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-10-04T11:31:02,794 | ^~~~ 2023-10-04T11:31:02,794 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-10-04T11:31:02,794 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-10-04T11:31:02,794 | ^~~~~~~~~~~~~~ 2023-10-04T11:31:02,794 src/ViennaRNA/gquad.c:40:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:02,794 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-10-04T11:31:02,795 | ^~ 2023-10-04T11:31:02,795 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-10-04T11:31:02,795 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-10-04T11:31:02,795 | ^~~~~~~~~~~~~~ 2023-10-04T11:31:02,802 src/ViennaRNA/gquad.c: In function ‘E_gquad_ali_penalty’: 2023-10-04T11:31:02,802 src/ViennaRNA/gquad.c:1338:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:02,803 1338 | if (mm[1] > P->gquadLayerMismatchMax) 2023-10-04T11:31:02,803 | ^ 2023-10-04T11:31:02,803 src/ViennaRNA/gquad.c: In function ‘exp_E_gquad_ali_penalty’: 2023-10-04T11:31:02,803 src/ViennaRNA/gquad.c:1357:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:02,803 1357 | if (mm[1] > pf->gquadLayerMismatchMax) 2023-10-04T11:31:02,803 | ^ 2023-10-04T11:31:02,807 src/ViennaRNA/gquad.c: In function ‘count_gquad_layer_mismatches’: 2023-10-04T11:31:02,808 src/ViennaRNA/gquad.c:1439:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:02,808 1439 | if (mismatch >= 2 * (L - 1)) 2023-10-04T11:31:02,808 | ^~ 2023-10-04T11:31:04,410 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/grammar.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/grammar.o -fopenmp 2023-10-04T11:31:04,677 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/heat_capacity.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/heat_capacity.o -fopenmp 2023-10-04T11:31:04,997 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/inverse.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/inverse.o -fopenmp 2023-10-04T11:31:05,180 src/ViennaRNA/inverse.c: In function ‘adaptive_walk’: 2023-10-04T11:31:05,180 src/ViennaRNA/inverse.c:114:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:31:05,180 114 | if (strlen(target) != len) 2023-10-04T11:31:05,180 | ^~ 2023-10-04T11:31:05,184 src/ViennaRNA/inverse.c: In function ‘make_ptable’: 2023-10-04T11:31:05,185 src/ViennaRNA/inverse.c:340:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:31:05,185 340 | for (i = 0; i < strlen(structure); i++) { 2023-10-04T11:31:05,185 | ^ 2023-10-04T11:31:05,185 src/ViennaRNA/inverse.c: In function ‘inverse_fold’: 2023-10-04T11:31:05,186 src/ViennaRNA/inverse.c:392:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:31:05,186 392 | if (strlen(start) != len) 2023-10-04T11:31:05,186 | ^~ 2023-10-04T11:31:05,189 src/ViennaRNA/inverse.c: In function ‘make_start’: 2023-10-04T11:31:05,189 src/ViennaRNA/inverse.c:514:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:31:05,189 514 | for (i = 0; i < strlen(start); i++) 2023-10-04T11:31:05,189 | ^ 2023-10-04T11:31:05,190 src/ViennaRNA/inverse.c:516:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:31:05,190 516 | for (i = 0; i < strlen(symbolset); i++) 2023-10-04T11:31:05,190 | ^ 2023-10-04T11:31:05,923 src/ViennaRNA/inverse.c: In function ‘inverse_fold’: 2023-10-04T11:31:05,924 src/ViennaRNA/inverse.c:369:5: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2023-10-04T11:31:05,924 369 | strncpy(wstruct, structure + i, j - i + 1); \ 2023-10-04T11:31:05,924 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:31:05,924 src/ViennaRNA/inverse.c:423:7: note: in expansion of macro ‘WALK’ 2023-10-04T11:31:05,924 423 | WALK(0, len - 1); 2023-10-04T11:31:05,924 | ^~~~ 2023-10-04T11:31:05,924 src/ViennaRNA/inverse.c:391:9: note: length computed here 2023-10-04T11:31:05,924 391 | len = strlen(structure); 2023-10-04T11:31:05,925 | ^~~~~~~~~~~~~~~~~ 2023-10-04T11:31:06,162 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/io/file_formats.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io/file_formats.o -fopenmp 2023-10-04T11:31:06,334 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect’: 2023-10-04T11:31:06,335 src/ViennaRNA/io/file_formats.c:202:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:31:06,335 202 | for (i = 0; i < strlen(seq) - 1; i++) { 2023-10-04T11:31:06,335 | ^ 2023-10-04T11:31:06,340 src/ViennaRNA/io/file_formats.c: In function ‘vrna_extract_record_rest_structure’: 2023-10-04T11:31:06,340 src/ViennaRNA/io/file_formats.c:600:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:06,340 600 | if ((length > 0) && (r - 1 == length)) 2023-10-04T11:31:06,341 | ^~ 2023-10-04T11:31:06,350 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2023-10-04T11:31:06,350 src/ViennaRNA/io/file_formats.c:919:29: warning: variable ‘tok4’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:31:06,350 919 | long tok1, tok3, tok4, tok5, tok6; 2023-10-04T11:31:06,351 | ^~~~ 2023-10-04T11:31:07,175 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/io/file_formats_msa.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io/file_formats_msa.o -fopenmp 2023-10-04T11:31:07,357 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_stockholm_alignment’: 2023-10-04T11:31:07,357 src/ViennaRNA/io/file_formats_msa.c:653:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:31:07,358 653 | for (i = 0; i < strlen(tmp_seq); i++) 2023-10-04T11:31:07,358 | ^ 2023-10-04T11:31:07,361 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_clustal_alignment’: 2023-10-04T11:31:07,362 src/ViennaRNA/io/file_formats_msa.c:902:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:31:07,362 902 | for (i = 0; i < strlen(seq); i++) 2023-10-04T11:31:07,362 | ^ 2023-10-04T11:31:08,090 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/io/io_utils.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io/io_utils.o -fopenmp 2023-10-04T11:31:08,428 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/findpath.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/findpath.o -fopenmp 2023-10-04T11:31:09,145 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/local_neighbors.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/local_neighbors.o -fopenmp 2023-10-04T11:31:09,263 src/ViennaRNA/landscape/local_neighbors.c: In function ‘insertions’: 2023-10-04T11:31:09,264 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:09,264 25 | if (ptable[idx] > idx) { \ 2023-10-04T11:31:09,264 | ^ 2023-10-04T11:31:09,264 src/ViennaRNA/landscape/local_neighbors.c:351:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-04T11:31:09,264 351 | FOR_UNPAIRED(pt, i, i = first_i, i <= last_i, i++, { 2023-10-04T11:31:09,264 | ^~~~~~~~~~~~ 2023-10-04T11:31:09,265 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:09,265 25 | if (ptable[idx] > idx) { \ 2023-10-04T11:31:09,265 | ^ 2023-10-04T11:31:09,265 src/ViennaRNA/landscape/local_neighbors.c:27:16: note: in definition of macro ‘FOR_UNPAIRED’ 2023-10-04T11:31:09,265 27 | } else { code } \ 2023-10-04T11:31:09,265 | ^~~~ 2023-10-04T11:31:09,265 src/ViennaRNA/landscape/local_neighbors.c:352:7: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-04T11:31:09,266 352 | FOR_UNPAIRED(pt, j, j = i + 1, j <= last_j, j++, { 2023-10-04T11:31:09,266 | ^~~~~~~~~~~~ 2023-10-04T11:31:09,266 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:09,266 25 | if (ptable[idx] > idx) { \ 2023-10-04T11:31:09,266 | ^ 2023-10-04T11:31:09,266 src/ViennaRNA/landscape/local_neighbors.c:358:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-04T11:31:09,266 358 | FOR_UNPAIRED(pt, i, i = first_i, i <= last_i, i++, { 2023-10-04T11:31:09,266 | ^~~~~~~~~~~~ 2023-10-04T11:31:09,267 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:09,267 25 | if (ptable[idx] > idx) { \ 2023-10-04T11:31:09,267 | ^ 2023-10-04T11:31:09,267 src/ViennaRNA/landscape/local_neighbors.c:27:16: note: in definition of macro ‘FOR_UNPAIRED’ 2023-10-04T11:31:09,267 27 | } else { code } \ 2023-10-04T11:31:09,267 | ^~~~ 2023-10-04T11:31:09,267 src/ViennaRNA/landscape/local_neighbors.c:359:7: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-04T11:31:09,267 359 | FOR_UNPAIRED(pt, j, j = first_j, j <= last_j, j++, { 2023-10-04T11:31:09,268 | ^~~~~~~~~~~~ 2023-10-04T11:31:09,268 src/ViennaRNA/landscape/local_neighbors.c: In function ‘deletion_range’: 2023-10-04T11:31:09,268 src/ViennaRNA/landscape/local_neighbors.c:32:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:09,268 32 | if (ptable[idx] > idx) { \ 2023-10-04T11:31:09,268 | ^ 2023-10-04T11:31:09,268 src/ViennaRNA/landscape/local_neighbors.c:379:3: note: in expansion of macro ‘FOR_PAIRED’ 2023-10-04T11:31:09,268 379 | FOR_PAIRED(pt, i, i = start, i <= stop, i++, { 2023-10-04T11:31:09,269 | ^~~~~~~~~~ 2023-10-04T11:31:09,269 src/ViennaRNA/landscape/local_neighbors.c: In function ‘shift_pos’: 2023-10-04T11:31:09,269 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:09,269 25 | if (ptable[idx] > idx) { \ 2023-10-04T11:31:09,269 | ^ 2023-10-04T11:31:09,269 src/ViennaRNA/landscape/local_neighbors.c:398:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-04T11:31:09,269 398 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2023-10-04T11:31:09,269 | ^~~~~~~~~~~~ 2023-10-04T11:31:09,270 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:09,270 25 | if (ptable[idx] > idx) { \ 2023-10-04T11:31:09,270 | ^ 2023-10-04T11:31:09,270 src/ViennaRNA/landscape/local_neighbors.c:403:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-04T11:31:09,270 403 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2023-10-04T11:31:09,270 | ^~~~~~~~~~~~ 2023-10-04T11:31:09,270 src/ViennaRNA/landscape/local_neighbors.c: In function ‘shift_both’: 2023-10-04T11:31:09,270 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:09,271 25 | if (ptable[idx] > idx) { \ 2023-10-04T11:31:09,271 | ^ 2023-10-04T11:31:09,271 src/ViennaRNA/landscape/local_neighbors.c:425:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-04T11:31:09,271 425 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2023-10-04T11:31:09,271 | ^~~~~~~~~~~~ 2023-10-04T11:31:09,271 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:09,271 25 | if (ptable[idx] > idx) { \ 2023-10-04T11:31:09,271 | ^ 2023-10-04T11:31:09,272 src/ViennaRNA/landscape/local_neighbors.c:433:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-04T11:31:09,272 433 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2023-10-04T11:31:09,272 | ^~~~~~~~~~~~ 2023-10-04T11:31:09,272 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:09,272 25 | if (ptable[idx] > idx) { \ 2023-10-04T11:31:09,272 | ^ 2023-10-04T11:31:09,272 src/ViennaRNA/landscape/local_neighbors.c:441:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2023-10-04T11:31:09,272 441 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2023-10-04T11:31:09,272 | ^~~~~~~~~~~~ 2023-10-04T11:31:09,273 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_local_nb_insertion’: 2023-10-04T11:31:09,273 src/ViennaRNA/landscape/local_neighbors.c:463:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable] 2023-10-04T11:31:09,273 463 | int min_loop_size = fc->params->model_details.min_loop_size; 2023-10-04T11:31:09,273 | ^~~~~~~~~~~~~ 2023-10-04T11:31:09,273 src/ViennaRNA/landscape/local_neighbors.c:462:23: warning: unused variable ‘k’ [-Wunused-variable] 2023-10-04T11:31:09,273 462 | int i, j, k, mi, mj, enc5, enc3; 2023-10-04T11:31:09,273 | ^ 2023-10-04T11:31:09,273 src/ViennaRNA/landscape/local_neighbors.c:462:20: warning: unused variable ‘j’ [-Wunused-variable] 2023-10-04T11:31:09,274 462 | int i, j, k, mi, mj, enc5, enc3; 2023-10-04T11:31:09,274 | ^ 2023-10-04T11:31:09,274 src/ViennaRNA/landscape/local_neighbors.c:461:17: warning: unused variable ‘n’ [-Wunused-variable] 2023-10-04T11:31:09,274 461 | unsigned int n = fc->length; 2023-10-04T11:31:09,274 | ^ 2023-10-04T11:31:09,274 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_local_nb_deletion’: 2023-10-04T11:31:09,274 src/ViennaRNA/landscape/local_neighbors.c:578:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable] 2023-10-04T11:31:09,274 578 | int min_loop_size = fc->params->model_details.min_loop_size; 2023-10-04T11:31:09,275 | ^~~~~~~~~~~~~ 2023-10-04T11:31:09,275 src/ViennaRNA/landscape/local_neighbors.c:577:23: warning: unused variable ‘k’ [-Wunused-variable] 2023-10-04T11:31:09,275 577 | int i, j, k, enc5, enc3; 2023-10-04T11:31:09,275 | ^ 2023-10-04T11:31:09,275 src/ViennaRNA/landscape/local_neighbors.c:577:20: warning: unused variable ‘j’ [-Wunused-variable] 2023-10-04T11:31:09,275 577 | int i, j, k, enc5, enc3; 2023-10-04T11:31:09,275 | ^ 2023-10-04T11:31:09,275 src/ViennaRNA/landscape/local_neighbors.c:576:17: warning: unused variable ‘n’ [-Wunused-variable] 2023-10-04T11:31:09,276 576 | unsigned int n = fc->length; 2023-10-04T11:31:09,276 | ^ 2023-10-04T11:31:09,281 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_conflicts_local_nb_insertion’: 2023-10-04T11:31:09,282 src/ViennaRNA/landscape/local_neighbors.c:970:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable] 2023-10-04T11:31:09,282 970 | int min_loop_size = fc->params->model_details.min_loop_size; 2023-10-04T11:31:09,282 | ^~~~~~~~~~~~~ 2023-10-04T11:31:09,282 src/ViennaRNA/landscape/local_neighbors.c:968:17: warning: unused variable ‘n’ [-Wunused-variable] 2023-10-04T11:31:09,282 968 | unsigned int n = fc->length; 2023-10-04T11:31:09,282 | ^ 2023-10-04T11:31:09,283 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_conflicts_local_nb_deletion’: 2023-10-04T11:31:09,283 src/ViennaRNA/landscape/local_neighbors.c:1073:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable] 2023-10-04T11:31:09,283 1073 | int min_loop_size = fc->params->model_details.min_loop_size; 2023-10-04T11:31:09,283 | ^~~~~~~~~~~~~ 2023-10-04T11:31:09,284 src/ViennaRNA/landscape/local_neighbors.c:1072:20: warning: unused variable ‘j’ [-Wunused-variable] 2023-10-04T11:31:09,284 1072 | int i, j, enc5, enc3; 2023-10-04T11:31:09,284 | ^ 2023-10-04T11:31:09,284 src/ViennaRNA/landscape/local_neighbors.c:1072:17: warning: unused variable ‘i’ [-Wunused-variable] 2023-10-04T11:31:09,284 1072 | int i, j, enc5, enc3; 2023-10-04T11:31:09,284 | ^ 2023-10-04T11:31:09,285 src/ViennaRNA/landscape/local_neighbors.c:1071:17: warning: unused variable ‘n’ [-Wunused-variable] 2023-10-04T11:31:09,285 1071 | unsigned int n = fc->length; 2023-10-04T11:31:09,285 | ^ 2023-10-04T11:31:09,290 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_conflicts_local_nb_shift’: 2023-10-04T11:31:09,290 src/ViennaRNA/landscape/local_neighbors.c:1100:17: warning: unused variable ‘n’ [-Wunused-variable] 2023-10-04T11:31:09,291 1100 | unsigned int n = fc->length; 2023-10-04T11:31:09,291 | ^ 2023-10-04T11:31:11,882 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/move.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/move.o -fopenmp 2023-10-04T11:31:12,164 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/neighbor.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/neighbor.o -fopenmp 2023-10-04T11:31:12,341 In file included from src/ViennaRNA/pair_mat.h:5, 2023-10-04T11:31:12,341 from src/ViennaRNA/landscape/neighbor.c:6: 2023-10-04T11:31:12,342 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_right’: 2023-10-04T11:31:12,342 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:12,342 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:31:12,342 | ^ 2023-10-04T11:31:12,342 src/ViennaRNA/landscape/neighbor.c:372:17: note: in expansion of macro ‘MIN2’ 2023-10-04T11:31:12,342 372 | int length = MIN2(vc->length + 1, end); 2023-10-04T11:31:12,343 | ^~~~ 2023-10-04T11:31:12,343 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:31:12,343 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:31:12,343 | ^~~ 2023-10-04T11:31:12,343 src/ViennaRNA/landscape/neighbor.c:372:17: note: in expansion of macro ‘MIN2’ 2023-10-04T11:31:12,343 372 | int length = MIN2(vc->length + 1, end); 2023-10-04T11:31:12,343 | ^~~~ 2023-10-04T11:31:12,344 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_i_from_right’: 2023-10-04T11:31:12,344 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:12,344 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:31:12,344 | ^ 2023-10-04T11:31:12,344 src/ViennaRNA/landscape/neighbor.c:500:17: note: in expansion of macro ‘MIN2’ 2023-10-04T11:31:12,344 500 | int length = MIN2(vc->length, end); 2023-10-04T11:31:12,344 | ^~~~ 2023-10-04T11:31:12,345 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:31:12,345 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:31:12,345 | ^~~ 2023-10-04T11:31:12,345 src/ViennaRNA/landscape/neighbor.c:500:17: note: in expansion of macro ‘MIN2’ 2023-10-04T11:31:12,345 500 | int length = MIN2(vc->length, end); 2023-10-04T11:31:12,345 | ^~~~ 2023-10-04T11:31:12,359 src/ViennaRNA/landscape/neighbor.c: In function ‘move_nxt_val_bp_right’: 2023-10-04T11:31:12,360 src/ViennaRNA/landscape/neighbor.c:1719:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:31:12,360 1719 | while (j <= length && pt[j] > j) // '(' 2023-10-04T11:31:12,360 | ^~ 2023-10-04T11:31:12,361 src/ViennaRNA/landscape/neighbor.c:1721:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:31:12,361 1721 | if (j > length || (pt[j] <= j && pt[j] > 0)) // ')' /* here, the current loop ends */ 2023-10-04T11:31:12,362 | ^ 2023-10-04T11:31:12,362 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpins’: 2023-10-04T11:31:12,363 src/ViennaRNA/landscape/neighbor.c:1749:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:12,363 1749 | for (i = 1; i <= vc->length; i++) 2023-10-04T11:31:12,363 | ^~ 2023-10-04T11:31:12,364 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpdel’: 2023-10-04T11:31:12,365 src/ViennaRNA/landscape/neighbor.c:1834:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:12,365 1834 | for (i = 1; i <= vc->length; i++) 2023-10-04T11:31:12,366 | ^~ 2023-10-04T11:31:12,367 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpshift’: 2023-10-04T11:31:12,368 src/ViennaRNA/landscape/neighbor.c:1915:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:12,368 1915 | for (i = 1; i <= vc->length; i++) 2023-10-04T11:31:12,368 | ^~ 2023-10-04T11:31:12,369 src/ViennaRNA/landscape/neighbor.c:1927:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:12,369 1927 | if (j < vc->length) { 2023-10-04T11:31:12,369 | ^ 2023-10-04T11:31:12,370 src/ViennaRNA/landscape/neighbor.c:1929:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:12,370 1929 | if (k >= 1 && k < vc->length && k != i - 1 && pt_tmp[k + 1] == 0 && 2023-10-04T11:31:12,370 | ^ 2023-10-04T11:31:14,098 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/walk.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/walk.o -fopenmp 2023-10-04T11:31:14,244 src/ViennaRNA/landscape/walk.c:140:1: warning: ‘isShift’ defined but not used [-Wunused-function] 2023-10-04T11:31:14,244 140 | isShift(vrna_move_t *m) 2023-10-04T11:31:14,244 | ^~~~~~~ 2023-10-04T11:31:14,244 In file included from src/ViennaRNA/landscape/walk.c:24: 2023-10-04T11:31:14,245 src/ViennaRNA/landscape/local_neighbors.inc:70:1: warning: ‘free_incremental_movelist’ defined but not used [-Wunused-function] 2023-10-04T11:31:14,245 70 | free_incremental_movelist(struct movelist *m) 2023-10-04T11:31:14,245 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:31:14,245 src/ViennaRNA/landscape/local_neighbors.inc:52:1: warning: ‘init_incremental_movelist’ defined but not used [-Wunused-function] 2023-10-04T11:31:14,245 52 | init_incremental_movelist(unsigned int n) 2023-10-04T11:31:14,245 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:31:14,246 src/ViennaRNA/landscape/local_neighbors.inc:17:1: warning: ‘add_to_incremental_move_list’ defined but not used [-Wunused-function] 2023-10-04T11:31:14,246 17 | add_to_incremental_move_list(vrna_fold_compound_t *fc, 2023-10-04T11:31:14,246 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:31:14,629 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/external.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/external.o -fopenmp 2023-10-04T11:31:14,847 In file included from src/ViennaRNA/loops/external.c:36: 2023-10-04T11:31:14,847 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-10-04T11:31:14,847 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,847 865 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:14,847 | ^ 2023-10-04T11:31:14,848 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-10-04T11:31:14,848 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,848 898 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:14,848 | ^ 2023-10-04T11:31:14,848 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-10-04T11:31:14,848 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,849 969 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:14,849 | ^ 2023-10-04T11:31:14,849 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-10-04T11:31:14,849 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,849 993 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:14,849 | ^ 2023-10-04T11:31:14,850 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-10-04T11:31:14,851 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,851 1121 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:14,851 | ^ 2023-10-04T11:31:14,851 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-10-04T11:31:14,851 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,851 1145 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:14,852 | ^ 2023-10-04T11:31:14,853 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-10-04T11:31:14,853 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,853 1292 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:14,854 | ^ 2023-10-04T11:31:14,854 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-10-04T11:31:14,854 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,854 1320 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:14,854 | ^ 2023-10-04T11:31:14,854 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-10-04T11:31:14,855 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,855 1348 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:14,855 | ^ 2023-10-04T11:31:14,855 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-10-04T11:31:14,856 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,856 1404 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:14,856 | ^ 2023-10-04T11:31:14,856 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-10-04T11:31:14,857 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,857 1426 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:14,857 | ^ 2023-10-04T11:31:14,857 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-10-04T11:31:14,858 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,858 1450 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:14,858 | ^ 2023-10-04T11:31:14,859 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-10-04T11:31:14,860 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,860 1596 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:14,860 | ^ 2023-10-04T11:31:14,861 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-10-04T11:31:14,861 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,861 1628 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:14,861 | ^ 2023-10-04T11:31:14,862 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-10-04T11:31:14,862 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,862 1677 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:14,862 | ^ 2023-10-04T11:31:14,863 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-10-04T11:31:14,863 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,863 1698 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:14,864 | ^ 2023-10-04T11:31:14,877 In file included from src/ViennaRNA/loops/external.c:14: 2023-10-04T11:31:14,878 src/ViennaRNA/loops/external.c: In function ‘f3_get_stem_contributions_d0’: 2023-10-04T11:31:14,878 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,878 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:31:14,878 | ^ 2023-10-04T11:31:14,878 src/ViennaRNA/loops/external.c:1000:11: note: in expansion of macro ‘MIN2’ 2023-10-04T11:31:14,879 1000 | max_j = MIN2(length - 1, i + maxdist); 2023-10-04T11:31:14,879 | ^~~~ 2023-10-04T11:31:14,879 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:31:14,879 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:31:14,879 | ^~~ 2023-10-04T11:31:14,879 src/ViennaRNA/loops/external.c:1000:11: note: in expansion of macro ‘MIN2’ 2023-10-04T11:31:14,879 1000 | max_j = MIN2(length - 1, i + maxdist); 2023-10-04T11:31:14,879 | ^~~~ 2023-10-04T11:31:14,880 src/ViennaRNA/loops/external.c:1070:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:14,881 1070 | if (length <= i + maxdist) { 2023-10-04T11:31:14,881 | ^~ 2023-10-04T11:31:19,375 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/external_bt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/external_bt.o -fopenmp 2023-10-04T11:31:19,589 In file included from src/ViennaRNA/loops/external_bt.c:34: 2023-10-04T11:31:19,590 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-10-04T11:31:19,590 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:19,590 865 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:19,590 | ^ 2023-10-04T11:31:19,590 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-10-04T11:31:19,591 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:19,591 898 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:19,591 | ^ 2023-10-04T11:31:19,591 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-10-04T11:31:19,591 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:19,591 969 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:19,591 | ^ 2023-10-04T11:31:19,592 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-10-04T11:31:19,592 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:19,592 993 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:19,592 | ^ 2023-10-04T11:31:19,593 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-10-04T11:31:19,593 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:19,593 1121 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:19,593 | ^ 2023-10-04T11:31:19,594 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-10-04T11:31:19,594 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:19,594 1145 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:19,594 | ^ 2023-10-04T11:31:19,596 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-10-04T11:31:19,596 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:19,596 1292 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:19,596 | ^ 2023-10-04T11:31:19,596 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-10-04T11:31:19,597 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:19,597 1320 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:19,597 | ^ 2023-10-04T11:31:19,597 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-10-04T11:31:19,597 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:19,598 1348 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:19,598 | ^ 2023-10-04T11:31:19,598 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-10-04T11:31:19,598 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:19,598 1404 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:19,599 | ^ 2023-10-04T11:31:19,599 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-10-04T11:31:19,599 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:19,599 1426 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:19,600 | ^ 2023-10-04T11:31:19,600 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-10-04T11:31:19,600 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:19,600 1450 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:19,600 | ^ 2023-10-04T11:31:19,602 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-10-04T11:31:19,602 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:19,603 1596 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:19,603 | ^ 2023-10-04T11:31:19,603 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-10-04T11:31:19,604 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:19,604 1628 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:19,604 | ^ 2023-10-04T11:31:19,604 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-10-04T11:31:19,605 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:19,605 1677 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:19,605 | ^ 2023-10-04T11:31:19,606 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-10-04T11:31:19,606 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:19,606 1698 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:19,606 | ^ 2023-10-04T11:31:21,725 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/external_pf.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/external_pf.o -fopenmp 2023-10-04T11:31:21,939 In file included from src/ViennaRNA/loops/external_pf.c:32: 2023-10-04T11:31:21,939 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-10-04T11:31:21,940 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:21,940 224 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:21,940 | ^ 2023-10-04T11:31:21,941 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-10-04T11:31:21,941 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:21,941 265 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:21,941 | ^ 2023-10-04T11:31:21,942 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-10-04T11:31:21,943 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:21,943 320 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:21,943 | ^ 2023-10-04T11:31:21,944 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-10-04T11:31:21,944 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:21,944 385 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:21,944 | ^ 2023-10-04T11:31:21,945 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-10-04T11:31:21,946 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:21,946 414 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:21,946 | ^ 2023-10-04T11:31:21,947 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-10-04T11:31:21,947 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:21,947 463 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:21,947 | ^ 2023-10-04T11:31:21,951 src/ViennaRNA/loops/external_pf.c: In function ‘vrna_exp_E_ext_fast_init’: 2023-10-04T11:31:21,951 src/ViennaRNA/loops/external_pf.c:160:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:21,951 160 | for (u = 0; u < domains_up->uniq_motif_count; u++) 2023-10-04T11:31:21,951 | ^ 2023-10-04T11:31:21,952 src/ViennaRNA/loops/external_pf.c:161:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:21,952 161 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-10-04T11:31:21,952 | ^ 2023-10-04T11:31:21,952 src/ViennaRNA/loops/external_pf.c:167:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:21,953 167 | for (u = 0; u <= ud_max_size; u++) 2023-10-04T11:31:21,953 | ^~ 2023-10-04T11:31:21,954 src/ViennaRNA/loops/external_pf.c: In function ‘vrna_exp_E_ext_fast’: 2023-10-04T11:31:21,955 src/ViennaRNA/loops/external_pf.c:270:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:21,955 270 | } else if (j > fc->length) { 2023-10-04T11:31:21,955 | ^ 2023-10-04T11:31:21,957 src/ViennaRNA/loops/external_pf.c: In function ‘reduce_ext_stem_fast’: 2023-10-04T11:31:21,958 src/ViennaRNA/loops/external_pf.c:412:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:21,958 412 | s3 = (((j < n) || circular) && (sn[j + 1] == sn[j])) ? S1[j + 1] : -1; 2023-10-04T11:31:21,958 | ^ 2023-10-04T11:31:23,175 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/hairpin.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/hairpin.o -fopenmp 2023-10-04T11:31:24,456 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/hairpin_bt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/hairpin_bt.o -fopenmp 2023-10-04T11:31:24,749 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/hairpin_pf.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/hairpin_pf.o -fopenmp 2023-10-04T11:31:26,036 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/internal.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/internal.o -fopenmp 2023-10-04T11:31:26,253 In file included from src/ViennaRNA/loops/internal.c:29: 2023-10-04T11:31:26,253 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-10-04T11:31:26,253 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:26,253 71 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:26,253 | ^ 2023-10-04T11:31:26,254 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-10-04T11:31:26,254 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:26,254 110 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:26,254 | ^ 2023-10-04T11:31:26,254 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-10-04T11:31:26,254 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:26,254 141 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:26,255 | ^ 2023-10-04T11:31:26,255 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-10-04T11:31:26,255 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:26,255 183 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:26,255 | ^ 2023-10-04T11:31:26,255 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-10-04T11:31:26,256 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:26,256 222 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:26,256 | ^ 2023-10-04T11:31:26,259 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-10-04T11:31:26,259 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:26,260 726 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:26,260 | ^ 2023-10-04T11:31:26,260 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-10-04T11:31:26,261 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:26,261 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-10-04T11:31:26,261 | ^~ 2023-10-04T11:31:26,261 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-10-04T11:31:26,261 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:26,262 780 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:26,262 | ^ 2023-10-04T11:31:26,262 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-10-04T11:31:26,263 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:26,263 821 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:26,263 | ^ 2023-10-04T11:31:28,838 src/ViennaRNA/loops/internal.c: In function ‘vrna_E_int_loop’: 2023-10-04T11:31:28,838 src/ViennaRNA/loops/internal.c:790:15: warning: ‘eee’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:31:28,838 790 | e = MIN2(e, eee); 2023-10-04T11:31:28,838 src/ViennaRNA/loops/internal.c:372:28: note: ‘eee’ was declared here 2023-10-04T11:31:28,838 372 | int e, eee, *idx, ij, *c, *ggg, *rtype, with_ud, with_gquad, noclose, 2023-10-04T11:31:28,839 | ^~~ 2023-10-04T11:31:30,334 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/internal_bt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/internal_bt.o -fopenmp 2023-10-04T11:31:30,566 In file included from src/ViennaRNA/loops/internal_bt.c:29: 2023-10-04T11:31:30,567 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-10-04T11:31:30,567 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:30,567 71 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:30,567 | ^ 2023-10-04T11:31:30,567 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-10-04T11:31:30,567 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:30,568 110 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:30,568 | ^ 2023-10-04T11:31:30,568 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-10-04T11:31:30,568 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:30,568 141 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:30,568 | ^ 2023-10-04T11:31:30,568 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-10-04T11:31:30,569 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:30,569 183 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:30,569 | ^ 2023-10-04T11:31:30,569 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-10-04T11:31:30,569 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:30,569 222 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:30,569 | ^ 2023-10-04T11:31:30,573 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-10-04T11:31:30,573 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:30,573 726 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:30,573 | ^ 2023-10-04T11:31:30,574 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-10-04T11:31:30,574 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:30,574 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-10-04T11:31:30,575 | ^~ 2023-10-04T11:31:30,575 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-10-04T11:31:30,575 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:30,575 780 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:30,575 | ^ 2023-10-04T11:31:30,576 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-10-04T11:31:30,576 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:30,576 821 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:30,576 | ^ 2023-10-04T11:31:33,779 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/internal_pf.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/internal_pf.o -fopenmp 2023-10-04T11:31:33,994 In file included from src/ViennaRNA/loops/internal_pf.c:29: 2023-10-04T11:31:33,994 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-10-04T11:31:33,995 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:33,995 73 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:33,995 | ^ 2023-10-04T11:31:33,996 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-10-04T11:31:33,997 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:33,997 112 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:33,997 | ^ 2023-10-04T11:31:33,997 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-10-04T11:31:33,998 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:33,998 143 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:33,998 | ^ 2023-10-04T11:31:33,999 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-10-04T11:31:33,999 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:33,999 185 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:33,999 | ^ 2023-10-04T11:31:34,000 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-10-04T11:31:34,001 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:34,001 224 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:34,001 | ^ 2023-10-04T11:31:34,005 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-10-04T11:31:34,006 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:34,006 730 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:34,006 | ^ 2023-10-04T11:31:34,007 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-10-04T11:31:34,008 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:34,008 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-10-04T11:31:34,008 | ^~ 2023-10-04T11:31:34,009 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-10-04T11:31:34,009 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:34,009 784 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:34,010 | ^ 2023-10-04T11:31:34,011 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-10-04T11:31:34,011 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:34,011 825 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:34,011 | ^ 2023-10-04T11:31:34,022 src/ViennaRNA/loops/internal_pf.c: In function ‘exp_E_int_loop’: 2023-10-04T11:31:34,023 src/ViennaRNA/loops/internal_pf.c:250:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:34,023 250 | if (last_k > se[sn[i]]) 2023-10-04T11:31:34,023 | ^ 2023-10-04T11:31:34,025 src/ViennaRNA/loops/internal_pf.c:331:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:34,026 331 | if (first_l < ss[sn[j]]) 2023-10-04T11:31:34,026 | ^ 2023-10-04T11:31:34,028 src/ViennaRNA/loops/internal_pf.c:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:34,028 415 | if (last_k > se[sn[i]]) 2023-10-04T11:31:34,028 | ^ 2023-10-04T11:31:34,029 src/ViennaRNA/loops/internal_pf.c:426:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:34,029 426 | if (first_l < ss[sn[j]]) 2023-10-04T11:31:34,029 | ^ 2023-10-04T11:31:37,757 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/multibranch.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/multibranch.o -fopenmp 2023-10-04T11:31:37,971 In file included from src/ViennaRNA/loops/multibranch.c:36: 2023-10-04T11:31:37,972 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-10-04T11:31:37,972 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:37,972 76 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:37,972 | ^ 2023-10-04T11:31:37,972 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-10-04T11:31:37,972 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:37,973 95 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:37,973 | ^ 2023-10-04T11:31:37,973 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-10-04T11:31:37,973 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:37,973 124 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:37,973 | ^ 2023-10-04T11:31:37,974 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-10-04T11:31:37,974 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:37,974 155 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:37,974 | ^ 2023-10-04T11:31:37,975 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-10-04T11:31:37,975 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:37,975 328 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:37,975 | ^ 2023-10-04T11:31:37,975 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-10-04T11:31:37,976 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:37,976 397 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:37,976 | ^ 2023-10-04T11:31:37,977 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-10-04T11:31:37,977 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:37,977 530 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:37,977 | ^ 2023-10-04T11:31:37,978 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-10-04T11:31:37,979 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:37,979 663 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:37,979 | ^ 2023-10-04T11:31:37,980 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-10-04T11:31:37,980 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:37,980 802 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:37,980 | ^ 2023-10-04T11:31:37,981 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-10-04T11:31:37,981 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:37,982 849 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:37,982 | ^ 2023-10-04T11:31:37,982 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-10-04T11:31:37,982 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:37,983 888 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:37,983 | ^ 2023-10-04T11:31:37,983 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-10-04T11:31:37,984 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:37,984 947 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:37,984 | ^ 2023-10-04T11:31:37,984 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-10-04T11:31:37,985 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:37,985 983 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:37,985 | ^ 2023-10-04T11:31:37,985 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-10-04T11:31:37,986 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:37,986 1020 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:37,986 | ^ 2023-10-04T11:31:37,987 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-10-04T11:31:37,987 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:37,987 1079 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:37,987 | ^ 2023-10-04T11:31:41,993 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/multibranch_bt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/multibranch_bt.o -fopenmp 2023-10-04T11:31:42,215 In file included from src/ViennaRNA/loops/multibranch_bt.c:30: 2023-10-04T11:31:42,215 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-10-04T11:31:42,215 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:42,215 76 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:42,215 | ^ 2023-10-04T11:31:42,216 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-10-04T11:31:42,216 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:42,216 95 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:42,216 | ^ 2023-10-04T11:31:42,216 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-10-04T11:31:42,216 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:42,217 124 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:42,217 | ^ 2023-10-04T11:31:42,217 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-10-04T11:31:42,217 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:42,217 155 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:42,217 | ^ 2023-10-04T11:31:42,218 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-10-04T11:31:42,218 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:42,218 328 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:42,218 | ^ 2023-10-04T11:31:42,219 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-10-04T11:31:42,219 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:42,219 397 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:42,219 | ^ 2023-10-04T11:31:42,220 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-10-04T11:31:42,220 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:42,220 530 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:42,221 | ^ 2023-10-04T11:31:42,222 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-10-04T11:31:42,222 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:42,222 663 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:42,222 | ^ 2023-10-04T11:31:42,223 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-10-04T11:31:42,223 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:42,224 802 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:42,224 | ^ 2023-10-04T11:31:42,224 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-10-04T11:31:42,225 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:42,225 849 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:42,225 | ^ 2023-10-04T11:31:42,225 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-10-04T11:31:42,226 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:42,226 888 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:42,226 | ^ 2023-10-04T11:31:42,227 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-10-04T11:31:42,227 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:42,227 947 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:42,227 | ^ 2023-10-04T11:31:42,228 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-10-04T11:31:42,228 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:42,228 983 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:42,228 | ^ 2023-10-04T11:31:42,229 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-10-04T11:31:42,229 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:42,229 1020 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:42,229 | ^ 2023-10-04T11:31:42,230 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-10-04T11:31:42,230 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:42,231 1079 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:42,231 | ^ 2023-10-04T11:31:46,044 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/multibranch_pf.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/multibranch_pf.o -fopenmp 2023-10-04T11:31:46,262 src/ViennaRNA/loops/multibranch_pf.c: In function ‘vrna_exp_E_ml_fast_init’: 2023-10-04T11:31:46,263 src/ViennaRNA/loops/multibranch_pf.c:125:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:46,263 125 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-10-04T11:31:46,263 | ^ 2023-10-04T11:31:46,266 In file included from src/ViennaRNA/loops/multibranch_pf.c:11: 2023-10-04T11:31:46,267 src/ViennaRNA/loops/multibranch_pf.c: In function ‘exp_E_mb_loop_fast’: 2023-10-04T11:31:46,267 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:46,267 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:31:46,267 | ^ 2023-10-04T11:31:46,267 src/ViennaRNA/loops/multibranch_pf.c:351:20: note: in expansion of macro ‘MIN2’ 2023-10-04T11:31:46,267 351 | int stop = MIN2(j - 1, se[sn[k - 1]]); 2023-10-04T11:31:46,267 | ^~~~ 2023-10-04T11:31:46,268 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:31:46,268 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:31:46,268 | ^~~ 2023-10-04T11:31:46,268 src/ViennaRNA/loops/multibranch_pf.c:351:20: note: in expansion of macro ‘MIN2’ 2023-10-04T11:31:46,268 351 | int stop = MIN2(j - 1, se[sn[k - 1]]); 2023-10-04T11:31:46,268 | ^~~~ 2023-10-04T11:31:46,271 src/ViennaRNA/loops/multibranch_pf.c: In function ‘exp_E_ml_fast’: 2023-10-04T11:31:46,271 src/ViennaRNA/utils/basic.h:111:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:46,271 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-10-04T11:31:46,272 | ^ 2023-10-04T11:31:46,272 src/ViennaRNA/loops/multibranch_pf.c:566:18: note: in expansion of macro ‘MAX2’ 2023-10-04T11:31:46,272 566 | int stop = MAX2(i, ss[sn[k]]); 2023-10-04T11:31:46,272 | ^~~~ 2023-10-04T11:31:46,272 src/ViennaRNA/utils/basic.h:111:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:31:46,272 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-10-04T11:31:46,272 | ^~~ 2023-10-04T11:31:46,272 src/ViennaRNA/loops/multibranch_pf.c:566:18: note: in expansion of macro ‘MAX2’ 2023-10-04T11:31:46,273 566 | int stop = MAX2(i, ss[sn[k]]); 2023-10-04T11:31:46,273 | ^~~~ 2023-10-04T11:31:46,273 src/ViennaRNA/loops/multibranch_pf.c:587:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:46,273 587 | if (maxk > se[sn[i]]) 2023-10-04T11:31:46,273 | ^ 2023-10-04T11:31:47,920 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mfe.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe.o -fopenmp 2023-10-04T11:31:48,161 In file included from src/ViennaRNA/mfe.c:58: 2023-10-04T11:31:48,162 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-10-04T11:31:48,162 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,162 865 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:48,162 | ^ 2023-10-04T11:31:48,162 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-10-04T11:31:48,163 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,163 898 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:48,163 | ^ 2023-10-04T11:31:48,163 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-10-04T11:31:48,163 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,163 969 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:48,164 | ^ 2023-10-04T11:31:48,164 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-10-04T11:31:48,164 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,164 993 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:48,164 | ^ 2023-10-04T11:31:48,165 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-10-04T11:31:48,165 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,166 1121 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:48,166 | ^ 2023-10-04T11:31:48,166 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-10-04T11:31:48,166 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,166 1145 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:48,166 | ^ 2023-10-04T11:31:48,168 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-10-04T11:31:48,168 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,168 1292 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:48,168 | ^ 2023-10-04T11:31:48,169 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-10-04T11:31:48,169 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,169 1320 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:48,169 | ^ 2023-10-04T11:31:48,169 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-10-04T11:31:48,170 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,170 1348 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:48,170 | ^ 2023-10-04T11:31:48,170 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-10-04T11:31:48,171 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,171 1404 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:48,171 | ^ 2023-10-04T11:31:48,171 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-10-04T11:31:48,172 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,172 1426 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:48,172 | ^ 2023-10-04T11:31:48,172 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-10-04T11:31:48,173 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,173 1450 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:48,173 | ^ 2023-10-04T11:31:48,174 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-10-04T11:31:48,175 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,175 1596 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:48,175 | ^ 2023-10-04T11:31:48,176 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-10-04T11:31:48,176 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,176 1628 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:31:48,176 | ^ 2023-10-04T11:31:48,177 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-10-04T11:31:48,177 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,177 1677 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:48,177 | ^ 2023-10-04T11:31:48,178 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-10-04T11:31:48,178 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,179 1698 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:31:48,179 | ^ 2023-10-04T11:31:48,184 src/ViennaRNA/mfe.c: In function ‘fill_arrays’: 2023-10-04T11:31:48,184 src/ViennaRNA/mfe.c:389:52: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:31:48,184 389 | if (length <= ((fc->strands > 1) ? fc->strands : md->min_loop_size)) { 2023-10-04T11:31:48,184 | ^~~~~~~~~~~~~~~~~ 2023-10-04T11:31:48,184 src/ViennaRNA/mfe.c:389:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,185 389 | if (length <= ((fc->strands > 1) ? fc->strands : md->min_loop_size)) { 2023-10-04T11:31:48,185 | ^~ 2023-10-04T11:31:48,186 src/ViennaRNA/mfe.c: In function ‘postprocess_circular’: 2023-10-04T11:31:48,186 src/ViennaRNA/mfe.c:510:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,186 510 | for (s = 0; s < fc->n_seq; s++) 2023-10-04T11:31:48,187 | ^ 2023-10-04T11:31:48,234 src/ViennaRNA/mfe.c: In function ‘pair_multi_strand’: 2023-10-04T11:31:48,235 src/ViennaRNA/mfe.c:2197:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,235 2197 | if (ends[sn[i]] > i) 2023-10-04T11:31:48,235 | ^ 2023-10-04T11:31:48,236 src/ViennaRNA/mfe.c:2200:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,236 2200 | if (j - 1 > ends[sn[i]]) 2023-10-04T11:31:48,237 | ^ 2023-10-04T11:31:48,238 src/ViennaRNA/mfe.c:2220:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,238 2220 | if (i + 1 <= ends[sn[nick]]) 2023-10-04T11:31:48,238 | ^~ 2023-10-04T11:31:48,240 src/ViennaRNA/mfe.c:2223:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,240 2223 | if (ends[sn[nick]] + 1 <= j - 1) 2023-10-04T11:31:48,240 | ^~ 2023-10-04T11:31:48,245 src/ViennaRNA/mfe.c:2292:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,245 2292 | if (nick > i + 2) 2023-10-04T11:31:48,245 | ^ 2023-10-04T11:31:48,246 src/ViennaRNA/mfe.c:2295:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,246 2295 | if (j > nick + 1) 2023-10-04T11:31:48,246 | ^ 2023-10-04T11:31:48,248 src/ViennaRNA/mfe.c:2325:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,249 2325 | if (nick > i + 2) 2023-10-04T11:31:48,249 | ^ 2023-10-04T11:31:48,250 src/ViennaRNA/mfe.c:2328:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,250 2328 | if (j > nick) 2023-10-04T11:31:48,250 | ^ 2023-10-04T11:31:48,252 src/ViennaRNA/mfe.c:2358:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,252 2358 | if (nick > i + 1) 2023-10-04T11:31:48,253 | ^ 2023-10-04T11:31:48,254 src/ViennaRNA/mfe.c:2361:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,254 2361 | if (j > nick + 1) 2023-10-04T11:31:48,254 | ^ 2023-10-04T11:31:48,256 src/ViennaRNA/mfe.c:2129:29: warning: variable ‘sc_red_ext’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:31:48,256 2129 | sc_ext_red_cb sc_red_ext; 2023-10-04T11:31:48,256 | ^~~~~~~~~~ 2023-10-04T11:31:48,257 src/ViennaRNA/mfe.c:2127:29: warning: variable ‘sc_spl’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:31:48,257 2127 | sc_ext_red_cb sc_spl; 2023-10-04T11:31:48,257 | ^~~~~~ 2023-10-04T11:31:48,259 src/ViennaRNA/mfe.c: In function ‘BT_multi_strand’: 2023-10-04T11:31:48,260 src/ViennaRNA/mfe.c:2477:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,260 2477 | if (ends[sn[*i]] > *i) 2023-10-04T11:31:48,260 | ^ 2023-10-04T11:31:48,261 src/ViennaRNA/mfe.c:2480:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,262 2480 | if (*j - 1 > ends[sn[*i]]) 2023-10-04T11:31:48,262 | ^ 2023-10-04T11:31:48,263 src/ViennaRNA/mfe.c:2486:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,263 2486 | *i = (ends[sn[*i]] > *i) ? *i + 1 : 0; 2023-10-04T11:31:48,263 | ^ 2023-10-04T11:31:48,264 src/ViennaRNA/mfe.c:2487:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,264 2487 | *j = (*j - 1 > ends[sn[*i]]) ? *j - 1 : 0; 2023-10-04T11:31:48,265 | ^ 2023-10-04T11:31:48,266 src/ViennaRNA/mfe.c:2495:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,266 2495 | if (*i + 1 <= ends[sn[nick]]) 2023-10-04T11:31:48,266 | ^~ 2023-10-04T11:31:48,267 src/ViennaRNA/mfe.c:2498:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,267 2498 | if (ends[sn[nick]] + 1 <= *j - 1) 2023-10-04T11:31:48,267 | ^~ 2023-10-04T11:31:48,269 src/ViennaRNA/mfe.c:2504:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,269 2504 | *i = (*i + 1 <= ends[sn[nick]]) ? *i + 1 : 0; 2023-10-04T11:31:48,269 | ^~ 2023-10-04T11:31:48,270 src/ViennaRNA/mfe.c:2505:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,270 2505 | *j = (ends[sn[nick]] + 1 <= *j - 1) ? *j - 1 : 0; 2023-10-04T11:31:48,270 | ^~ 2023-10-04T11:31:48,275 src/ViennaRNA/mfe.c:2590:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,275 2590 | if (nick > *i + 2) 2023-10-04T11:31:48,275 | ^ 2023-10-04T11:31:48,277 src/ViennaRNA/mfe.c:2593:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,277 2593 | if (*j > nick + 1) 2023-10-04T11:31:48,277 | ^ 2023-10-04T11:31:48,278 src/ViennaRNA/mfe.c:2599:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,278 2599 | *i = (nick > *i + 2) ? *i + 2 : 0; 2023-10-04T11:31:48,279 | ^ 2023-10-04T11:31:48,279 src/ViennaRNA/mfe.c:2600:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,280 2600 | *j = (*j > nick + 1) ? *j - 2 : 0; 2023-10-04T11:31:48,280 | ^ 2023-10-04T11:31:48,282 src/ViennaRNA/mfe.c:2623:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,282 2623 | if (nick > *i + 2) 2023-10-04T11:31:48,282 | ^ 2023-10-04T11:31:48,283 src/ViennaRNA/mfe.c:2626:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,283 2626 | if (*j > nick) 2023-10-04T11:31:48,284 | ^ 2023-10-04T11:31:48,285 src/ViennaRNA/mfe.c:2632:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,285 2632 | *i = (nick > *i + 2) ? *i + 2 : 0; 2023-10-04T11:31:48,285 | ^ 2023-10-04T11:31:48,286 src/ViennaRNA/mfe.c:2633:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,286 2633 | *j = (*j > nick) ? *j - 1 : 0; 2023-10-04T11:31:48,287 | ^ 2023-10-04T11:31:48,288 src/ViennaRNA/mfe.c:2656:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,289 2656 | if (nick > *i + 1) 2023-10-04T11:31:48,289 | ^ 2023-10-04T11:31:48,290 src/ViennaRNA/mfe.c:2659:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,290 2659 | if (*j > nick + 1) 2023-10-04T11:31:48,290 | ^ 2023-10-04T11:31:48,292 src/ViennaRNA/mfe.c:2665:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:48,292 2665 | *i = (nick > *i + 1) ? *i + 1 : 0; 2023-10-04T11:31:48,292 | ^ 2023-10-04T11:31:48,293 src/ViennaRNA/mfe.c:2666:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,293 2666 | *j = (*j > nick + 1) ? *j - 2 : 0; 2023-10-04T11:31:48,293 | ^ 2023-10-04T11:31:48,294 src/ViennaRNA/mfe.c:2403:29: warning: variable ‘sc_red_ext’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:31:48,295 2403 | sc_ext_red_cb sc_red_ext; 2023-10-04T11:31:48,295 | ^~~~~~~~~~ 2023-10-04T11:31:48,296 src/ViennaRNA/mfe.c:2401:29: warning: variable ‘sc_spl’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:31:48,296 2401 | sc_ext_red_cb sc_spl; 2023-10-04T11:31:48,296 | ^~~~~~ 2023-10-04T11:31:48,318 src/ViennaRNA/mfe.c: In function ‘backtrack’: 2023-10-04T11:31:48,320 src/ViennaRNA/mfe.c:3264:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,320 3264 | if (k < fc->strand_end[strand]) { 2023-10-04T11:31:48,320 | ^ 2023-10-04T11:31:48,322 src/ViennaRNA/mfe.c:3299:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:48,323 3299 | if (k > fc->strand_start[strand]) { 2023-10-04T11:31:48,323 | ^ 2023-10-04T11:31:55,203 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mfe_window.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe_window.o -fopenmp 2023-10-04T11:31:55,445 src/ViennaRNA/mfe_window.c: In function ‘backtrack’: 2023-10-04T11:31:55,446 src/ViennaRNA/mfe_window.c:930:68: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:31:55,446 930 | if ((bp_stack[b].i == bp_stack[b].j) && (bp_stack[b].i < length)) 2023-10-04T11:31:55,446 | ^ 2023-10-04T11:31:55,448 src/ViennaRNA/mfe_window.c:1051:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:55,448 1051 | if (max3 < bp_stack[i].j - start) 2023-10-04T11:31:55,448 | ^ 2023-10-04T11:31:55,452 src/ViennaRNA/mfe_window.c: In function ‘update_block’: 2023-10-04T11:31:55,453 src/ViennaRNA/mfe_window.c:1312:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:31:55,453 1312 | for (size_t pos = i_local + 1; pos <= end; pos++) 2023-10-04T11:31:55,453 | ^~ 2023-10-04T11:31:55,453 src/ViennaRNA/mfe_window.c:1313:22: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:31:55,454 1313 | if (b->pt[pos] > pos) { 2023-10-04T11:31:55,454 | ^ 2023-10-04T11:31:55,455 src/ViennaRNA/mfe_window.c:1348:24: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:31:55,455 1348 | if (b->pt[p] > p) { 2023-10-04T11:31:55,455 | ^ 2023-10-04T11:31:55,458 src/ViennaRNA/mfe_window.c: In function ‘insert_block’: 2023-10-04T11:31:55,459 src/ViennaRNA/mfe_window.c:1592:21: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-04T11:31:55,459 1592 | if (pt[i_local] > i_local) { 2023-10-04T11:31:55,459 | ^ 2023-10-04T11:31:55,460 src/ViennaRNA/mfe_window.c: In function ‘print_block_list’: 2023-10-04T11:31:55,461 src/ViennaRNA/mfe_window.c:1611:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-10-04T11:31:55,461 1611 | printf("block %lu: en=%d, start: %lu, end: %lu, shift: %lu\n", 2023-10-04T11:31:55,462 | ~~^ 2023-10-04T11:31:55,462 | | 2023-10-04T11:31:55,462 | long unsigned int 2023-10-04T11:31:55,462 | %u 2023-10-04T11:31:55,462 1612 | cnt, 2023-10-04T11:31:55,462 | ~~~ 2023-10-04T11:31:55,462 | | 2023-10-04T11:31:55,462 | size_t {aka unsigned int} 2023-10-04T11:31:55,464 src/ViennaRNA/mfe_window.c:1617:13: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-10-04T11:31:55,464 1617 | printf("%lu blocks remaining\n", cnt); 2023-10-04T11:31:55,464 | ~~^ ~~~ 2023-10-04T11:31:55,464 | | | 2023-10-04T11:31:55,464 | long unsigned int size_t {aka unsigned int} 2023-10-04T11:31:55,464 | %u 2023-10-04T11:31:55,492 At top level: 2023-10-04T11:31:55,493 src/ViennaRNA/mfe_window.c:1605:1: warning: ‘print_block_list’ defined but not used [-Wunused-function] 2023-10-04T11:31:55,493 1605 | print_block_list(struct block *block_list) 2023-10-04T11:31:55,493 | ^~~~~~~~~~~~~~~~ 2023-10-04T11:31:57,125 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mfe_window_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe_window_wrappers.o -fopenmp 2023-10-04T11:31:57,355 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mfe_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe_wrappers.o -fopenmp 2023-10-04T11:31:57,593 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mm.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mm.o -fopenmp 2023-10-04T11:31:57,772 src/ViennaRNA/mm.c: In function ‘maximumMatchingConstraint’: 2023-10-04T11:31:57,772 src/ViennaRNA/mm.c:154:25: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:57,772 154 | if (ptable[l] != j) 2023-10-04T11:31:57,772 | ^~ 2023-10-04T11:31:57,773 src/ViennaRNA/mm.c: In function ‘maximumMatching2Constraint’: 2023-10-04T11:31:57,773 src/ViennaRNA/mm.c:187:25: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:57,773 187 | if (ptable[l] != j && ptable2[l] != j) 2023-10-04T11:31:57,773 | ^~ 2023-10-04T11:31:57,774 src/ViennaRNA/mm.c:187:44: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:31:57,774 187 | if (ptable[l] != j && ptable2[l] != j) 2023-10-04T11:31:57,774 | ^~ 2023-10-04T11:31:58,332 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/model.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/model.o -fopenmp 2023-10-04T11:31:59,181 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/move_set.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/move_set.o -fopenmp 2023-10-04T11:32:01,105 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/convert.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/convert.o -fopenmp 2023-10-04T11:32:01,662 In file included from src/ViennaRNA/params/convert.c:27: 2023-10-04T11:32:01,663 src/ViennaRNA/params/1.8.4_epars.h:100:13: warning: ‘oldinternal_loop37_184’ defined but not used [-Wunused-variable] 2023-10-04T11:32:01,663 100 | PRIVATE int oldinternal_loop37_184[31] = { 2023-10-04T11:32:01,663 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:01,663 src/ViennaRNA/params/1.8.4_epars.h:90:13: warning: ‘oldbulge37_184’ defined but not used [-Wunused-variable] 2023-10-04T11:32:01,663 90 | PRIVATE int oldbulge37_184[31] = { 2023-10-04T11:32:01,664 | ^~~~~~~~~~~~~~ 2023-10-04T11:32:01,664 src/ViennaRNA/params/1.8.4_epars.h:80:13: warning: ‘oldhairpin37_184’ defined but not used [-Wunused-variable] 2023-10-04T11:32:01,664 80 | PRIVATE int oldhairpin37_184[31] = { /* from ViennaRNA 1.3 */ 2023-10-04T11:32:01,664 | ^~~~~~~~~~~~~~~~ 2023-10-04T11:32:01,664 src/ViennaRNA/params/1.8.4_epars.h:50:16: warning: ‘Tmeasure_184’ defined but not used [-Wunused-variable] 2023-10-04T11:32:01,664 50 | PRIVATE double Tmeasure_184 = 37 + K0; /* temperature of param measurements */ 2023-10-04T11:32:01,664 | ^~~~~~~~~~~~ 2023-10-04T11:32:02,397 In function ‘write_new_parameter_file’, 2023-10-04T11:32:02,398 inlined from ‘convert_parameter_file’ at src/ViennaRNA/params/convert.c:172:3: 2023-10-04T11:32:02,398 src/ViennaRNA/params/convert.c:1166:9: warning: ‘strncpy’ specified bound 6 equals destination size [-Wstringop-truncation] 2023-10-04T11:32:02,398 1166 | strncpy(bla, Tetraloops_184 + c * 7, 6); 2023-10-04T11:32:02,398 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:02,399 src/ViennaRNA/params/convert.c:1145:9: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 240 [-Wstringop-truncation] 2023-10-04T11:32:02,400 1145 | strncpy(bla, Triloops_184 + c * 6, 5); 2023-10-04T11:32:02,400 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:03,725 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/default.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/default.o -fopenmp 2023-10-04T11:32:04,401 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/io.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/io.o -fopenmp 2023-10-04T11:32:10,636 src/ViennaRNA/params/io.c: In function ‘save_parameter_file’: 2023-10-04T11:32:10,636 src/ViennaRNA/params/io.c:1613:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:32:10,637 1613 | for (c = 0; c < strlen(Hexaloops) / 9; c++) 2023-10-04T11:32:10,637 | ^ 2023-10-04T11:32:10,637 src/ViennaRNA/params/io.c:1617:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:32:10,638 1617 | for (c = 0; c < strlen(Tetraloops) / 7; c++) 2023-10-04T11:32:10,638 | ^ 2023-10-04T11:32:10,639 src/ViennaRNA/params/io.c:1621:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:32:10,639 1621 | for (c = 0; c < strlen(Triloops) / 6; c++) 2023-10-04T11:32:10,639 | ^ 2023-10-04T11:32:10,649 src/ViennaRNA/params/io.c: In function ‘write_parameter_file’: 2023-10-04T11:32:10,649 src/ViennaRNA/params/io.c:2096:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:32:10,649 2096 | for (c = 0; c < strlen(Hexaloops) / 9; c++) 2023-10-04T11:32:10,650 | ^ 2023-10-04T11:32:10,651 src/ViennaRNA/params/io.c:2100:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:32:10,651 2100 | for (c = 0; c < strlen(Tetraloops) / 7; c++) 2023-10-04T11:32:10,651 | ^ 2023-10-04T11:32:10,652 src/ViennaRNA/params/io.c:2104:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:32:10,652 2104 | for (c = 0; c < strlen(Triloops) / 6; c++) 2023-10-04T11:32:10,652 | ^ 2023-10-04T11:32:10,674 At top level: 2023-10-04T11:32:10,674 src/ViennaRNA/params/io.c:1003:1: warning: ‘rd_6dim’ defined but not used [-Wunused-function] 2023-10-04T11:32:10,674 1003 | rd_6dim(char **content, 2023-10-04T11:32:10,675 | ^~~~~~~ 2023-10-04T11:32:13,451 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/params.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/params.o -fopenmp 2023-10-04T11:32:13,663 src/ViennaRNA/params/params.c: In function ‘rescale_params’: 2023-10-04T11:32:13,663 src/ViennaRNA/params/params.c:1088:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:13,663 1088 | for (i = 2; i <= vc->length; i++) { 2023-10-04T11:32:13,663 | ^~ 2023-10-04T11:32:16,139 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/salt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/salt.o -fopenmp 2023-10-04T11:32:16,308 src/ViennaRNA/params/salt.c: In function ‘vrna_salt_duplex_init’: 2023-10-04T11:32:16,309 src/ViennaRNA/params/salt.c:193:19: warning: unused variable ‘penalty’ [-Wunused-variable] 2023-10-04T11:32:16,310 193 | double a, x, penalty; 2023-10-04T11:32:16,310 | ^~~~~~~ 2023-10-04T11:32:16,310 src/ViennaRNA/params/salt.c:193:13: warning: unused variable ‘a’ [-Wunused-variable] 2023-10-04T11:32:16,310 193 | double a, x, penalty; 2023-10-04T11:32:16,311 | ^ 2023-10-04T11:32:16,494 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/part_func.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/part_func.o -fopenmp 2023-10-04T11:32:16,727 src/ViennaRNA/part_func.c: In function ‘postprocess_circular’: 2023-10-04T11:32:16,727 src/ViennaRNA/part_func.c:770:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:16,728 770 | for (s = 0; s < fc->n_seq; s++) 2023-10-04T11:32:16,728 | ^ 2023-10-04T11:32:17,802 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/part_func_co.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/part_func_co.o -fopenmp 2023-10-04T11:32:18,256 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/part_func_up.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/part_func_up.o -fopenmp 2023-10-04T11:32:18,464 src/ViennaRNA/part_func_up.c: In function ‘free_pu_contrib_struct’: 2023-10-04T11:32:18,464 src/ViennaRNA/part_func_up.c:232:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:32:18,464 232 | for (i = 0; i <= pu->length; i++) { 2023-10-04T11:32:18,465 | ^~ 2023-10-04T11:32:18,465 src/ViennaRNA/part_func_up.c: In function ‘pf_unstru’: 2023-10-04T11:32:18,465 src/ViennaRNA/part_func_up.c:280:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:18,466 280 | for (i = 0; i < size; i++) 2023-10-04T11:32:18,466 | ^ 2023-10-04T11:32:20,867 src/ViennaRNA/part_func_up.c: In function ‘pf_interact’: 2023-10-04T11:32:20,867 src/ViennaRNA/part_func_up.c:921:69: warning: ‘p_c2_S’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:32:20,868 921 | tt = qint_4[i][j][a][b] * p_c_S[add_i5][add_i3] * p_c2_S[j][b] * scalew * rev_d; 2023-10-04T11:32:20,868 | ^ 2023-10-04T11:32:21,865 src/ViennaRNA/part_func_up.c: In function ‘Up_plot’: 2023-10-04T11:32:21,866 src/ViennaRNA/part_func_up.c:1625:10: warning: ‘ret’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:32:21,866 1625 | return ret; 2023-10-04T11:32:21,866 | ^~~ 2023-10-04T11:32:22,025 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/part_func_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/part_func_wrappers.o -fopenmp 2023-10-04T11:32:22,297 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/perturbation_fold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/perturbation_fold.o -fopenmp 2023-10-04T11:32:22,889 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/pf_fold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/pf_fold.o -fopenmp 2023-10-04T11:32:23,575 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/pf_multifold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/pf_multifold.o -fopenmp 2023-10-04T11:32:23,688 src/ViennaRNA/pf_multifold.c: In function ‘mf_rule_pair’: 2023-10-04T11:32:23,689 src/ViennaRNA/pf_multifold.c:121:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:23,689 121 | if (i + 1 <= ends[sn[nick]]) 2023-10-04T11:32:23,690 | ^~ 2023-10-04T11:32:23,690 src/ViennaRNA/pf_multifold.c:124:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:32:23,690 124 | if (ends[sn[nick]] + 1 <= j - 1) 2023-10-04T11:32:23,690 | ^~ 2023-10-04T11:32:23,955 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plex.o -fopenmp 2023-10-04T11:32:24,157 src/ViennaRNA/plex.c: In function ‘duplexfold_XS’: 2023-10-04T11:32:24,157 src/ViennaRNA/plex.c:431:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:24,158 431 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2023-10-04T11:32:24,158 | ^~~~~~~ 2023-10-04T11:32:24,171 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-10-04T11:32:24,172 src/ViennaRNA/plex.c:759:11: warning: unused variable ‘jdiff’ [-Wunused-variable] 2023-10-04T11:32:24,172 759 | int jdiff = j_pos + j - 11; 2023-10-04T11:32:24,172 | ^~~~~ 2023-10-04T11:32:24,174 src/ViennaRNA/plex.c:1010:7: warning: variable ‘endy’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:24,174 1010 | int endy; 2023-10-04T11:32:24,174 | ^~~~ 2023-10-04T11:32:24,174 src/ViennaRNA/plex.c:1008:7: warning: variable ‘endx’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:24,175 1008 | int endx; 2023-10-04T11:32:24,175 | ^~~~ 2023-10-04T11:32:24,175 src/ViennaRNA/plex.c:624:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:24,175 624 | int maxPenalty[4]; 2023-10-04T11:32:24,175 | ^~~~~~~~~~ 2023-10-04T11:32:24,193 src/ViennaRNA/plex.c: In function ‘fbacktrack_XS’: 2023-10-04T11:32:24,193 src/ViennaRNA/plex.c:1107:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:24,194 1107 | int maxPenalty[4]; 2023-10-04T11:32:24,194 | ^~~~~~~~~~ 2023-10-04T11:32:24,208 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2023-10-04T11:32:24,209 src/ViennaRNA/plex.c:1938:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:24,209 1938 | int maxPenalty[4]; 2023-10-04T11:32:24,209 | ^~~~~~~~~~ 2023-10-04T11:32:24,223 src/ViennaRNA/plex.c: In function ‘duplexfold’: 2023-10-04T11:32:24,224 src/ViennaRNA/plex.c:2663:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:24,224 2663 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-10-04T11:32:24,225 | ^~ 2023-10-04T11:32:24,243 src/ViennaRNA/plex.c: In function ‘fduplexfold’: 2023-10-04T11:32:24,244 src/ViennaRNA/plex.c:2851:39: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:24,244 2851 | int i, j, Emin, i_min, j_min, l1; 2023-10-04T11:32:24,244 | ^~ 2023-10-04T11:32:25,634 src/ViennaRNA/plex.c:3177:16: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:32:25,634 3177 | j0 = MAX2(j - 1, 11); 2023-10-04T11:32:25,634 | ^ 2023-10-04T11:32:25,635 src/ViennaRNA/plex.c:2862:13: note: ‘max_pos_j’ was declared here 2023-10-04T11:32:25,635 2862 | int max_pos_j; 2023-10-04T11:32:25,635 | ^~~~~~~~~ 2023-10-04T11:32:25,637 src/ViennaRNA/plex.c:3189:20: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:32:25,637 3189 | type = pair[S1[i]][S2[j]]; 2023-10-04T11:32:25,637 | ^ 2023-10-04T11:32:25,638 src/ViennaRNA/plex.c:2861:13: note: ‘max_pos’ was declared here 2023-10-04T11:32:25,638 2861 | int max_pos; /* get position of the best hit */ 2023-10-04T11:32:25,638 | ^~~~~~~ 2023-10-04T11:32:28,252 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-10-04T11:32:28,253 src/ViennaRNA/plex.c:1023:6: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:32:28,253 1023 | if (j_min > 11) 2023-10-04T11:32:28,253 | ^ 2023-10-04T11:32:28,253 src/ViennaRNA/plex.c:1126:20: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:32:28,253 1126 | type = pair[S1[i]][S2[j]]; 2023-10-04T11:32:28,253 | ^ 2023-10-04T11:32:28,254 src/ViennaRNA/plex.c:618:13: note: ‘max_pos’ was declared here 2023-10-04T11:32:28,254 618 | int max_pos; /* get position of the best hit */ 2023-10-04T11:32:28,254 | ^~~~~~~ 2023-10-04T11:32:30,927 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2023-10-04T11:32:30,928 src/ViennaRNA/plex.c:2317:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:32:30,928 2317 | position_j[i + delta] = min_j_colonne; 2023-10-04T11:32:30,928 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-10-04T11:32:31,970 src/ViennaRNA/plex.c: In function ‘Lduplexfold’: 2023-10-04T11:32:31,972 src/ViennaRNA/plex.c:4087:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:32:31,972 4087 | position_j[i + delta] = min_j_colonne; 2023-10-04T11:32:31,973 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-10-04T11:32:32,985 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plex_functions.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plex_functions.o -fopenmp 2023-10-04T11:32:33,182 src/ViennaRNA/plex_functions.c: In function ‘vrna_pk_plex’: 2023-10-04T11:32:33,182 src/ViennaRNA/plex_functions.c:250:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:33,182 250 | for (i = hit_ptr->start_5; i <= hit_ptr->end_5; i++) 2023-10-04T11:32:33,183 | ^~ 2023-10-04T11:32:33,183 src/ViennaRNA/plex_functions.c:252:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:33,183 252 | for (i = hit_ptr->start_3; i <= hit_ptr->end_3; i++) 2023-10-04T11:32:33,183 | ^~ 2023-10-04T11:32:33,184 src/ViennaRNA/plex_functions.c:284:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:33,184 284 | for (i = hit_ptr->start_5 - 1; i < hit_ptr->end_5; i++) 2023-10-04T11:32:33,185 | ^ 2023-10-04T11:32:33,185 src/ViennaRNA/plex_functions.c:288:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:33,185 288 | for (i = hit_ptr->start_3 - 1; i < hit_ptr->end_3; i++) 2023-10-04T11:32:33,185 | ^ 2023-10-04T11:32:33,189 src/ViennaRNA/plex_functions.c: In function ‘duplexfold_XS’: 2023-10-04T11:32:33,190 src/ViennaRNA/plex_functions.c:563:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:32:33,190 563 | if (n > turn + 1) { 2023-10-04T11:32:33,190 | ^ 2023-10-04T11:32:33,191 src/ViennaRNA/plex_functions.c:575:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:33,191 575 | for (j = i + turn + 1; j <= n; j++) { 2023-10-04T11:32:33,191 | ^~ 2023-10-04T11:32:33,192 src/ViennaRNA/plex_functions.c:591:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:33,192 591 | for (l = i + turn + 1; l <= n; l++) { 2023-10-04T11:32:33,192 | ^~ 2023-10-04T11:32:33,194 src/ViennaRNA/plex_functions.c:632:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:33,195 632 | for (j = i + turn + 1; j <= n; j++) { 2023-10-04T11:32:33,195 | ^~ 2023-10-04T11:32:33,196 In file included from src/ViennaRNA/plex_functions.c:25: 2023-10-04T11:32:33,196 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:32:33,196 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:32:33,196 | ^ 2023-10-04T11:32:33,196 src/ViennaRNA/plex_functions.c:634:23: note: in expansion of macro ‘MIN2’ 2023-10-04T11:32:33,196 634 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2023-10-04T11:32:33,197 | ^~~~ 2023-10-04T11:32:33,197 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:32:33,197 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-10-04T11:32:33,197 | ^~~ 2023-10-04T11:32:33,197 src/ViennaRNA/plex_functions.c:634:23: note: in expansion of macro ‘MIN2’ 2023-10-04T11:32:33,197 634 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2023-10-04T11:32:33,197 | ^~~~ 2023-10-04T11:32:33,198 src/ViennaRNA/plex_functions.c:640:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:33,198 640 | sl = (l < n) ? S1[l + 1] : -1; 2023-10-04T11:32:33,198 | ^ 2023-10-04T11:32:34,481 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.o -fopenmp 2023-10-04T11:32:34,622 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-10-04T11:32:34,623 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-10-04T11:32:34,623 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-10-04T11:32:34,623 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:799:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:34,623 799 | double alpha[3]; 2023-10-04T11:32:34,623 | ^~~~~ 2023-10-04T11:32:34,667 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:19: 2023-10-04T11:32:34,667 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectLineArc’: 2023-10-04T11:32:34,667 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:285:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,667 285 | char *fnName = "intersectLineArc"; 2023-10-04T11:32:34,667 | ^~~~~~ 2023-10-04T11:32:34,668 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectArcArc’: 2023-10-04T11:32:34,668 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:341:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,668 341 | char *fnName = "intersectArcArc"; 2023-10-04T11:32:34,668 | ^~~~~~ 2023-10-04T11:32:34,673 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:19, 2023-10-04T11:32:34,673 from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-10-04T11:32:34,673 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-10-04T11:32:34,673 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-10-04T11:32:34,673 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc: In function ‘ClosestPtPointBulge’: 2023-10-04T11:32:34,673 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:151:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,674 151 | char *fnName = "CLOSEST ON BULGE"; 2023-10-04T11:32:34,674 | ^~~~~~ 2023-10-04T11:32:34,682 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-10-04T11:32:34,683 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-10-04T11:32:34,683 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-10-04T11:32:34,683 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodesBoundingBoxes’: 2023-10-04T11:32:34,683 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:142:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,683 142 | const char *fnName = "intersectNodesBoundingBoxes"; 2023-10-04T11:32:34,683 | ^~~~~~ 2023-10-04T11:32:34,683 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodeNode’: 2023-10-04T11:32:34,684 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:179:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,684 179 | const char *fnName = "intersectNodeNode"; 2023-10-04T11:32:34,684 | ^~~~~~ 2023-10-04T11:32:34,688 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:23, 2023-10-04T11:32:34,689 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-10-04T11:32:34,689 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-10-04T11:32:34,689 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc: In function ‘checkAndApplyConfigChanges’: 2023-10-04T11:32:34,689 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:109:13: warning: unused variable ‘newRadius’ [-Wunused-variable] 2023-10-04T11:32:34,689 109 | double newRadius = cfg->radius; 2023-10-04T11:32:34,689 | ^~~~~~~~~ 2023-10-04T11:32:34,690 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:104:13: warning: unused variable ‘oldRadius’ [-Wunused-variable] 2023-10-04T11:32:34,690 104 | double oldRadius = cfg->radius; 2023-10-04T11:32:34,690 | ^~~~~~~~~ 2023-10-04T11:32:34,690 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:100:9: warning: unused variable ‘logTag’ [-Wunused-variable] 2023-10-04T11:32:34,690 100 | char *logTag = intersectionTypeToString(it); 2023-10-04T11:32:34,690 | ^~~~~~ 2023-10-04T11:32:34,690 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:61:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,691 61 | char *fnName = "checkAndApplyConfigChanges"; 2023-10-04T11:32:34,691 | ^~~~~~ 2023-10-04T11:32:34,691 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-10-04T11:32:34,691 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-10-04T11:32:34,691 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusLinearSearch’: 2023-10-04T11:32:34,691 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:84:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,691 84 | char *fnName = "shrinkLoopRadiusLinearSearch"; 2023-10-04T11:32:34,692 | ^~~~~~ 2023-10-04T11:32:34,692 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusBinarySearch’: 2023-10-04T11:32:34,692 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:162:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,692 162 | char *fnName = "shrinkLoopRadiusBinarySearch"; 2023-10-04T11:32:34,692 | ^~~~~~ 2023-10-04T11:32:34,698 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeNode’: 2023-10-04T11:32:34,698 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:694:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,698 694 | char *fnName = "optimizeNode"; 2023-10-04T11:32:34,698 | ^~~~~~ 2023-10-04T11:32:34,699 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTreeRecursive’: 2023-10-04T11:32:34,699 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:889:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,699 889 | char *fnName = "optimizeTreeRecursive"; 2023-10-04T11:32:34,700 | ^~~~~~ 2023-10-04T11:32:34,700 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTree’: 2023-10-04T11:32:34,700 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:943:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,701 943 | char *fnName = "optimizeTree"; 2023-10-04T11:32:34,701 | ^~~~~~ 2023-10-04T11:32:34,702 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:22, 2023-10-04T11:32:34,702 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:14, 2023-10-04T11:32:34,702 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-10-04T11:32:34,702 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasEquidistantIncrease’: 2023-10-04T11:32:34,702 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:53:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,703 53 | char *fnName = "CALC DELTAS EQUIDISTANT INCREASE"; 2023-10-04T11:32:34,703 | ^~~~~~ 2023-10-04T11:32:34,704 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasMaximumFirstDecrease’: 2023-10-04T11:32:34,704 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:82:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,704 82 | char *fnName = "CALC DELTAS MAXIMUM FIRST DECREASE"; 2023-10-04T11:32:34,704 | ^~~~~~ 2023-10-04T11:32:34,705 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasNearestNeighborsFirstDecrease’: 2023-10-04T11:32:34,705 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:191:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,705 191 | char *fnName = "CALC DELTAS NEAREST NEIGHBOR FIRST DECREASE"; 2023-10-04T11:32:34,706 | ^~~~~~ 2023-10-04T11:32:34,708 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltas’: 2023-10-04T11:32:34,709 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:310:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,709 310 | char *fnName = "CALC DELTAS"; 2023-10-04T11:32:34,709 | ^~~~~~ 2023-10-04T11:32:34,709 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:14, 2023-10-04T11:32:34,709 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-10-04T11:32:34,709 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘fixIntersectionOfSiblings’: 2023-10-04T11:32:34,710 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:76:18: warning: unused variable ‘rightNode’ [-Wunused-variable] 2023-10-04T11:32:34,710 76 | treeNode *rightNode = getChild(tree, right); 2023-10-04T11:32:34,710 | ^~~~~~~~~ 2023-10-04T11:32:34,710 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:75:18: warning: unused variable ‘leftNode’ [-Wunused-variable] 2023-10-04T11:32:34,710 75 | treeNode *leftNode = getChild(tree, left); 2023-10-04T11:32:34,710 | ^~~~~~~~ 2023-10-04T11:32:34,710 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘handleIntersectionOfSiblings’: 2023-10-04T11:32:34,711 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:103:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,711 103 | char *fnName = "FIX INTERSECTION OF SIBLINGS"; 2023-10-04T11:32:34,711 | ^~~~~~ 2023-10-04T11:32:34,711 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘checkSiblings’: 2023-10-04T11:32:34,712 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:153:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,712 153 | char *fnName = "CHECK SIBLINGS"; 2023-10-04T11:32:34,712 | ^~~~~~ 2023-10-04T11:32:34,720 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:23, 2023-10-04T11:32:34,720 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-10-04T11:32:34,720 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-10-04T11:32:34,720 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘pointToAngle’: 2023-10-04T11:32:34,720 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:31:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,720 31 | char *fnName = "POINT TO ANGLE"; 2023-10-04T11:32:34,721 | ^~~~~~ 2023-10-04T11:32:34,722 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfRectangleAndCircle’: 2023-10-04T11:32:34,722 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:169:14: warning: unused variable ‘staticRectExt’ [-Wunused-variable] 2023-10-04T11:32:34,722 169 | double staticRectExt[2] = { 2023-10-04T11:32:34,722 | ^~~~~~~~~~~~~ 2023-10-04T11:32:34,722 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:74:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,723 74 | char *fnName = "fixIntersectionOfCircleAndRectangle"; 2023-10-04T11:32:34,723 | ^~~~~~ 2023-10-04T11:32:34,724 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:23, 2023-10-04T11:32:34,725 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-10-04T11:32:34,725 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-10-04T11:32:34,725 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfCircles’: 2023-10-04T11:32:34,725 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:204:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,725 204 | char *fnName = "fixIntersectionOfCircles"; 2023-10-04T11:32:34,725 | ^~~~~~ 2023-10-04T11:32:34,726 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxL’: 2023-10-04T11:32:34,726 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:310:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,726 310 | char *fnName = "getRotationAngleLxL"; 2023-10-04T11:32:34,726 | ^~~~~~ 2023-10-04T11:32:34,726 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxS’: 2023-10-04T11:32:34,726 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:349:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,726 349 | char *fnName = "getRotationAngleLxS"; 2023-10-04T11:32:34,726 | ^~~~~~ 2023-10-04T11:32:34,727 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxL’: 2023-10-04T11:32:34,727 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:382:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,727 382 | char *fnName = "getRotationAngleSxL"; 2023-10-04T11:32:34,727 | ^~~~~~ 2023-10-04T11:32:34,727 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxB’: 2023-10-04T11:32:34,727 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:434:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-10-04T11:32:34,727 434 | short intersect = intersectLoopBulges(staticLoop, mobileStem, &mobileBulgeIndex); 2023-10-04T11:32:34,728 | ^~~~~~~~~ 2023-10-04T11:32:34,728 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:413:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,728 413 | char *fnName = "getRotationAngleLxB"; 2023-10-04T11:32:34,728 | ^~~~~~ 2023-10-04T11:32:34,728 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxL’: 2023-10-04T11:32:34,728 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:489:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-10-04T11:32:34,728 489 | short intersect = intersectLoopBulges(mobileLoop, staticStem, &staticBulgeIndex); 2023-10-04T11:32:34,728 | ^~~~~~~~~ 2023-10-04T11:32:34,729 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:477:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,729 477 | char *fnName = "getRotationAngleBxL"; 2023-10-04T11:32:34,729 | ^~~~~~ 2023-10-04T11:32:34,729 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxS’: 2023-10-04T11:32:34,729 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:541:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,729 541 | char *fnName = "getRotationAngleSxS"; 2023-10-04T11:32:34,729 | ^~~~~~ 2023-10-04T11:32:34,729 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxB’: 2023-10-04T11:32:34,730 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:567:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-10-04T11:32:34,730 567 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2023-10-04T11:32:34,730 | ^~~~~~~~~ 2023-10-04T11:32:34,730 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:560:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,730 560 | char *fnName = "getRotationAngleSxB"; 2023-10-04T11:32:34,730 | ^~~~~~ 2023-10-04T11:32:34,730 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxS’: 2023-10-04T11:32:34,731 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:612:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-10-04T11:32:34,731 612 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2023-10-04T11:32:34,731 | ^~~~~~~~~ 2023-10-04T11:32:34,731 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:605:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,731 605 | char *fnName = "getRotationAngleBxS"; 2023-10-04T11:32:34,731 | ^~~~~~ 2023-10-04T11:32:34,731 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxB’: 2023-10-04T11:32:34,732 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:660:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-10-04T11:32:34,732 660 | short intersect = intersectBulgesBulges(staticStem, 2023-10-04T11:32:34,732 | ^~~~~~~~~ 2023-10-04T11:32:34,732 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:650:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,732 650 | char *fnName = "getRotationAngleBxB"; 2023-10-04T11:32:34,732 | ^~~~~~ 2023-10-04T11:32:34,734 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-10-04T11:32:34,734 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-10-04T11:32:34,734 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_getRotationSign’: 2023-10-04T11:32:34,735 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘noIntersection’ not handled in switch [-Wswitch] 2023-10-04T11:32:34,735 64 | switch (it) { 2023-10-04T11:32:34,735 | ^~~~~~ 2023-10-04T11:32:34,735 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxL’ not handled in switch [-Wswitch] 2023-10-04T11:32:34,735 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxS’ not handled in switch [-Wswitch] 2023-10-04T11:32:34,735 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxL’ not handled in switch [-Wswitch] 2023-10-04T11:32:34,736 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxS’ not handled in switch [-Wswitch] 2023-10-04T11:32:34,736 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxB’ not handled in switch [-Wswitch] 2023-10-04T11:32:34,736 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxS’ not handled in switch [-Wswitch] 2023-10-04T11:32:34,736 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxB’ not handled in switch [-Wswitch] 2023-10-04T11:32:34,736 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘siblings’ not handled in switch [-Wswitch] 2023-10-04T11:32:34,736 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘exterior’ not handled in switch [-Wswitch] 2023-10-04T11:32:34,736 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:44:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,737 44 | char *fnName = "getRotationSign"; 2023-10-04T11:32:34,737 | ^~~~~~ 2023-10-04T11:32:34,737 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_getRotationSign’: 2023-10-04T11:32:34,737 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:105:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,737 105 | char *fnName = "getRotationSign"; 2023-10-04T11:32:34,737 | ^~~~~~ 2023-10-04T11:32:34,737 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘getRotationSign’: 2023-10-04T11:32:34,738 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:145:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,738 145 | char *fnName = "getRotationSign"; 2023-10-04T11:32:34,738 | ^~~~~~ 2023-10-04T11:32:34,738 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2023-10-04T11:32:34,738 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:222:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,738 222 | char *fnName = "fixIntersectionWithAncestor"; 2023-10-04T11:32:34,738 | ^~~~~~ 2023-10-04T11:32:34,739 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘handleIntersectionWithAncestor’: 2023-10-04T11:32:34,739 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:366:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,739 366 | char *fnName = "handleIntersectionWithAncestor"; 2023-10-04T11:32:34,740 | ^~~~~~ 2023-10-04T11:32:34,741 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_setupExteriorBoundingBoxes’: 2023-10-04T11:32:34,741 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:498:15: warning: unused variable ‘stemSouthX’ [-Wunused-variable] 2023-10-04T11:32:34,741 498 | double stemSouthX = loopX; 2023-10-04T11:32:34,741 | ^~~~~~~~~~ 2023-10-04T11:32:34,741 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:497:15: warning: unused variable ‘stemNorthX’ [-Wunused-variable] 2023-10-04T11:32:34,741 497 | double stemNorthX = loopX; 2023-10-04T11:32:34,742 | ^~~~~~~~~~ 2023-10-04T11:32:34,742 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:482:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,742 482 | char *fnName = "setupExteriorBoundingBoxes"; 2023-10-04T11:32:34,742 | ^~~~~~ 2023-10-04T11:32:34,743 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_setupExteriorBoundingBoxes’: 2023-10-04T11:32:34,743 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:625:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,743 625 | char *fnName = "setupExteriorBoundingBoxes"; 2023-10-04T11:32:34,743 | ^~~~~~ 2023-10-04T11:32:34,744 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE_setupExteriorBoundingBoxes’: 2023-10-04T11:32:34,745 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:715:21: warning: unused variable ‘it’ [-Wunused-variable] 2023-10-04T11:32:34,745 715 | intersectionType it = noIntersection; 2023-10-04T11:32:34,745 | ^~ 2023-10-04T11:32:34,745 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:695:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,745 695 | char *fnName = "setupExteriorBoundingBoxes"; 2023-10-04T11:32:34,745 | ^~~~~~ 2023-10-04T11:32:34,748 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘setupExteriorBoundingBoxes’: 2023-10-04T11:32:34,748 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:759:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,748 759 | char *fnName = "setupExteriorBoundingBoxes"; 2023-10-04T11:32:34,748 | ^~~~~~ 2023-10-04T11:32:34,749 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘checkNodeAgainstAncestors’: 2023-10-04T11:32:34,749 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:950:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,749 950 | char *fnName = "checkNodeAgainstAncestors"; 2023-10-04T11:32:34,749 | ^~~~~~ 2023-10-04T11:32:34,750 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-10-04T11:32:34,751 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc: In function ‘checkAndFixIntersections’: 2023-10-04T11:32:34,751 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:29:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,751 29 | char *fnName = "checkAndFixIntersections"; 2023-10-04T11:32:34,751 | ^~~~~~ 2023-10-04T11:32:34,763 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘checkRemainingIntersections’: 2023-10-04T11:32:34,763 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:75:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-10-04T11:32:34,764 75 | char *fnName = "checkRemainingIntersections"; 2023-10-04T11:32:34,764 | ^~~~~~ 2023-10-04T11:32:34,768 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘vrna_plot_coords_puzzler_pt’: 2023-10-04T11:32:34,768 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:505:13: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-10-04T11:32:34,769 505 | short intersect = checkRemainingIntersections(myX, 2023-10-04T11:32:34,769 | ^~~~~~~~~ 2023-10-04T11:32:34,770 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13, 2023-10-04T11:32:34,771 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-10-04T11:32:34,771 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: At top level: 2023-10-04T11:32:34,771 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2023-10-04T11:32:34,771 126 | intToMotiv(const int _int); 2023-10-04T11:32:34,771 | ^~~~~~~~~~ 2023-10-04T11:32:34,772 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:16, 2023-10-04T11:32:34,772 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-10-04T11:32:34,772 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:135:1: warning: ‘printLBox’ declared ‘static’ but never defined [-Wunused-function] 2023-10-04T11:32:34,772 135 | printLBox(const loopBox *loop); 2023-10-04T11:32:34,772 | ^~~~~~~~~ 2023-10-04T11:32:34,772 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:139:1: warning: ‘printSBox’ declared ‘static’ but never defined [-Wunused-function] 2023-10-04T11:32:34,772 139 | printSBox(const stemBox *stem); 2023-10-04T11:32:34,773 | ^~~~~~~~~ 2023-10-04T11:32:34,773 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-10-04T11:32:34,773 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:224:1: warning: ‘printTree’ declared ‘static’ but never defined [-Wunused-function] 2023-10-04T11:32:34,773 224 | printTree(const treeNode *node, 2023-10-04T11:32:34,773 | ^~~~~~~~~ 2023-10-04T11:32:34,834 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:21: 2023-10-04T11:32:34,834 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:482:1: warning: ‘resolveExteriorChildIntersections’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,834 482 | resolveExteriorChildIntersections(treeNode *exteriorNode, 2023-10-04T11:32:34,834 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:34,834 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:305:1: warning: ‘resolveExteriorChildrenIntersectionAffin’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,834 305 | resolveExteriorChildrenIntersectionAffin(treeNode *exteriorNode, 2023-10-04T11:32:34,834 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:34,835 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-10-04T11:32:34,835 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-10-04T11:32:34,835 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:754:1: warning: ‘setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,835 754 | setupExteriorBoundingBoxes(treeNode *exterior, 2023-10-04T11:32:34,835 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:34,835 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:690:1: warning: ‘TENTATIVE_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,835 690 | TENTATIVE_setupExteriorBoundingBoxes(treeNode *exterior, 2023-10-04T11:32:34,836 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:34,836 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:620:1: warning: ‘TENTATIVE2_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,836 620 | TENTATIVE2_setupExteriorBoundingBoxes(treeNode *exterior, 2023-10-04T11:32:34,836 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:34,836 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:142:1: warning: ‘getRotationSign’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,836 142 | getRotationSign(const treeNode **const path, 2023-10-04T11:32:34,836 | ^~~~~~~~~~~~~~~ 2023-10-04T11:32:34,836 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:40:1: warning: ‘TENTATIVE3_getRotationSign’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,836 40 | TENTATIVE3_getRotationSign(treeNode **const path, 2023-10-04T11:32:34,837 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:34,837 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-10-04T11:32:34,837 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-10-04T11:32:34,837 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-10-04T11:32:34,837 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:111:1: warning: ‘checkBounds’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,837 111 | checkBounds(const double l1, 2023-10-04T11:32:34,837 | ^~~~~~~~~~~ 2023-10-04T11:32:34,837 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:19, 2023-10-04T11:32:34,838 from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-10-04T11:32:34,838 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-10-04T11:32:34,838 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-10-04T11:32:34,838 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:471:1: warning: ‘TestLoopBulge’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,838 471 | TestLoopBulge(const double c[2], 2023-10-04T11:32:34,838 | ^~~~~~~~~~~~~ 2023-10-04T11:32:34,838 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:207:1: warning: ‘ClosestPtPointTriangle’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,839 207 | ClosestPtPointTriangle(const double p[2], 2023-10-04T11:32:34,839 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:34,839 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-10-04T11:32:34,839 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1056:1: warning: ‘getChildNode’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,839 1056 | getChildNode(treeNode *tree, 2023-10-04T11:32:34,839 | ^~~~~~~~~~~~ 2023-10-04T11:32:34,839 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1038:1: warning: ‘getStemCenter’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,839 1038 | getStemCenter(const treeNode *node, 2023-10-04T11:32:34,840 | ^~~~~~~~~~~~~ 2023-10-04T11:32:34,840 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:569:1: warning: ‘getExterior’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,840 569 | getExterior(treeNode *node) 2023-10-04T11:32:34,840 | ^~~~~~~~~~~ 2023-10-04T11:32:34,840 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:537:1: warning: ‘getPairedAngle’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,840 537 | getPairedAngle(const treeNode *node) 2023-10-04T11:32:34,840 | ^~~~~~~~~~~~~~ 2023-10-04T11:32:34,840 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:16, 2023-10-04T11:32:34,841 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-10-04T11:32:34,841 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:235:1: warning: ‘rotateStemBox’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,841 235 | rotateStemBox(stemBox *box, 2023-10-04T11:32:34,841 | ^~~~~~~~~~~~~ 2023-10-04T11:32:34,841 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:203:1: warning: ‘rotateLoopBox’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,841 203 | rotateLoopBox(loopBox *box, 2023-10-04T11:32:34,841 | ^~~~~~~~~~~~~ 2023-10-04T11:32:34,841 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13, 2023-10-04T11:32:34,842 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-10-04T11:32:34,842 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,842 243 | getArcAngleDegree(const config *cfg, 2023-10-04T11:32:34,842 | ^~~~~~~~~~~~~~~~~ 2023-10-04T11:32:34,842 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,842 216 | cfgPrintConfig(config *cfg) 2023-10-04T11:32:34,842 | ^~~~~~~~~~~~~~ 2023-10-04T11:32:34,842 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-10-04T11:32:34,842 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-10-04T11:32:34,843 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:506:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,843 506 | normalizeAngle(const double angle, 2023-10-04T11:32:34,843 | ^~~~~~~~~~~~~~ 2023-10-04T11:32:34,843 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14, 2023-10-04T11:32:34,843 from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-10-04T11:32:34,843 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-10-04T11:32:34,844 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-10-04T11:32:34,844 116 | angleToDistance(const double radius, 2023-10-04T11:32:34,844 | ^~~~~~~~~~~~~~~ 2023-10-04T11:32:38,333 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-10-04T11:32:38,333 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-10-04T11:32:38,333 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2023-10-04T11:32:38,333 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:255:12: warning: ‘interiorChildAngle’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:32:38,334 255 | double diffToStraight = MATH_PI - interiorChildAngle; 2023-10-04T11:32:38,334 | ^~~~~~~~~~~~~~ 2023-10-04T11:32:39,840 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/RNApuzzler/RNAturtle.o -fopenmp 2023-10-04T11:32:39,979 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-10-04T11:32:39,980 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-10-04T11:32:39,980 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-10-04T11:32:39,980 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:799:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:39,980 799 | double alpha[3]; 2023-10-04T11:32:39,980 | ^~~~~ 2023-10-04T11:32:40,002 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13, 2023-10-04T11:32:40,002 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-10-04T11:32:40,003 src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c: At top level: 2023-10-04T11:32:40,003 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2023-10-04T11:32:40,003 126 | intToMotiv(const int _int); 2023-10-04T11:32:40,003 | ^~~~~~~~~~ 2023-10-04T11:32:40,015 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:705:1: warning: ‘cfgIsValid’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,016 705 | cfgIsValid(config *cfg, 2023-10-04T11:32:40,016 | ^~~~~~~~~~ 2023-10-04T11:32:40,016 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:648:1: warning: ‘cfgApplyChanges’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,016 648 | cfgApplyChanges(config *cfg, 2023-10-04T11:32:40,016 | ^~~~~~~~~~~~~~~ 2023-10-04T11:32:40,016 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,016 243 | getArcAngleDegree(const config *cfg, 2023-10-04T11:32:40,017 | ^~~~~~~~~~~~~~~~~ 2023-10-04T11:32:40,017 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,017 216 | cfgPrintConfig(config *cfg) 2023-10-04T11:32:40,017 | ^~~~~~~~~~~~~~ 2023-10-04T11:32:40,017 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:207:1: warning: ‘cfgFreeConfig’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,017 207 | cfgFreeConfig(config *cfg) 2023-10-04T11:32:40,017 | ^~~~~~~~~~~~~ 2023-10-04T11:32:40,018 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:184:1: warning: ‘cfgCloneConfig’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,018 184 | cfgCloneConfig(const config *cfg) 2023-10-04T11:32:40,018 | ^~~~~~~~~~~~~~ 2023-10-04T11:32:40,018 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-10-04T11:32:40,018 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-10-04T11:32:40,018 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:764:1: warning: ‘normal’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,018 764 | normal(const double v[2], 2023-10-04T11:32:40,019 | ^~~~~~ 2023-10-04T11:32:40,019 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:723:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,019 723 | getCutPointsOfCircleAndLine(const double *center, 2023-10-04T11:32:40,019 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:40,019 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:608:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,019 608 | getCutPointsOfCircles(const double *c1, 2023-10-04T11:32:40,019 | ^~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:40,019 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:568:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,020 568 | translatePointByVector(const double *point, 2023-10-04T11:32:40,020 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:40,020 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:555:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,020 555 | rotateVectorByAngle(const double *vector, 2023-10-04T11:32:40,020 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:40,020 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:506:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,020 506 | normalizeAngle(const double angle, 2023-10-04T11:32:40,020 | ^~~~~~~~~~~~~~ 2023-10-04T11:32:40,021 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:490:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,021 490 | anglePtPtPt2D(const double *p1, 2023-10-04T11:32:40,021 | ^~~~~~~~~~~~~ 2023-10-04T11:32:40,021 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:446:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,021 446 | isToTheRightPointVector(const double *lineStart, 2023-10-04T11:32:40,021 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:40,021 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:359:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,021 359 | vectorLength2DSquared(const double vector[2]) 2023-10-04T11:32:40,022 | ^~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:40,022 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:342:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,022 342 | toRad(double angle) 2023-10-04T11:32:40,022 | ^~~~~ 2023-10-04T11:32:40,022 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14, 2023-10-04T11:32:40,022 from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-10-04T11:32:40,022 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-10-04T11:32:40,022 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,023 116 | angleToDistance(const double radius, 2023-10-04T11:32:40,023 | ^~~~~~~~~~~~~~~ 2023-10-04T11:32:40,023 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,023 108 | distanceToAngle(const double radius, 2023-10-04T11:32:40,023 | ^~~~~~~~~~~~~~~ 2023-10-04T11:32:40,023 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2023-10-04T11:32:40,023 62 | bubblesort(const int numValues, 2023-10-04T11:32:40,023 | ^~~~~~~~~~ 2023-10-04T11:32:40,871 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/alignments.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/alignments.o -fopenmp 2023-10-04T11:32:41,137 src/ViennaRNA/plotting/alignments.c: In function ‘vrna_file_PS_aln_slice’: 2023-10-04T11:32:41,137 src/ViennaRNA/plotting/alignments.c:147:34: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-10-04T11:32:41,137 147 | columnWidth = (columns == 0) ? length : columns; 2023-10-04T11:32:41,137 | ^~~~~~ 2023-10-04T11:32:41,138 src/ViennaRNA/plotting/alignments.c:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:41,138 245 | for (i = start; i <= end; i++) { 2023-10-04T11:32:41,139 | ^~ 2023-10-04T11:32:41,139 src/ViennaRNA/plotting/alignments.c:247:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:41,139 247 | if ((j > i) && (j <= end)) { 2023-10-04T11:32:41,139 | ^~ 2023-10-04T11:32:41,140 src/ViennaRNA/plotting/alignments.c:327:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:41,140 327 | if (length - currPos < max_len) 2023-10-04T11:32:41,140 | ^ 2023-10-04T11:32:41,140 src/ViennaRNA/plotting/alignments.c:334:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:32:41,141 334 | for (j = 0; j < (currPos + strlen(tmpBuffer)); j++) 2023-10-04T11:32:41,141 | ^ 2023-10-04T11:32:41,151 In file included from src/ViennaRNA/plotting/alignments.c:26: 2023-10-04T11:32:41,151 At top level: 2023-10-04T11:32:41,151 src/ViennaRNA/plotting/ps_helpers.inc:151:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2023-10-04T11:32:41,151 151 | print_PS_coords(FILE *fh, 2023-10-04T11:32:41,152 | ^~~~~~~~~~~~~~~ 2023-10-04T11:32:41,152 src/ViennaRNA/plotting/ps_helpers.inc:131:1: warning: ‘print_PS_sequence’ defined but not used [-Wunused-function] 2023-10-04T11:32:41,152 131 | print_PS_sequence(FILE *fh, 2023-10-04T11:32:41,152 | ^~~~~~~~~~~~~~~~~ 2023-10-04T11:32:41,599 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/layouts.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/layouts.o -fopenmp 2023-10-04T11:32:41,807 src/ViennaRNA/plotting/layouts.c: In function ‘simple_xy_coordinates’: 2023-10-04T11:32:41,808 src/ViennaRNA/plotting/layouts.c:547:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:41,808 547 | int ret, n; 2023-10-04T11:32:41,808 | ^~~ 2023-10-04T11:32:41,808 src/ViennaRNA/plotting/layouts.c: In function ‘simple_circplot_coordinates’: 2023-10-04T11:32:41,809 src/ViennaRNA/plotting/layouts.c:570:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:41,810 570 | int ret, n; 2023-10-04T11:32:41,810 | ^~~ 2023-10-04T11:32:42,232 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/naview/naview.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/naview/naview.o -fopenmp 2023-10-04T11:32:43,053 src/ViennaRNA/plotting/naview/naview.c: In function ‘traverse_loop’: 2023-10-04T11:32:43,054 src/ViennaRNA/plotting/naview/naview.c:963:22: warning: ‘imindit’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:32:43,054 963 | lp->connections[imindit]->extruded = true; 2023-10-04T11:32:43,054 | ^ 2023-10-04T11:32:43,054 src/ViennaRNA/plotting/naview/naview.c:928:21: note: ‘imindit’ was declared here 2023-10-04T11:32:43,054 928 | int i,j,end,start,imindit; 2023-10-04T11:32:43,054 | ^~~~~~~ 2023-10-04T11:32:43,055 src/ViennaRNA/plotting/naview/naview.c:627:15: warning: ‘imaxloop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:32:43,055 627 | icstart = imaxloop + 1; 2023-10-04T11:32:43,055 | ~~~~~~~~^~~~~~~~~~~~~~ 2023-10-04T11:32:43,754 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/plot_utils.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/plot_utils.o -fopenmp 2023-10-04T11:32:43,872 src/ViennaRNA/plotting/plot_utils.c: In function ‘vrna_annotate_covar_pairs’: 2023-10-04T11:32:43,873 src/ViennaRNA/plotting/plot_utils.c:205:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:43,873 205 | for (s = 0; s < n_seq; s++) { 2023-10-04T11:32:43,873 | ^ 2023-10-04T11:32:44,165 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/probabilities.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/probabilities.o -fopenmp 2023-10-04T11:32:44,443 src/ViennaRNA/plotting/probabilities.c: In function ‘vrna_plot_dp_EPS’: 2023-10-04T11:32:44,443 src/ViennaRNA/plotting/probabilities.c:296:62: warning: variable ‘linright_num’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:44,443 296 | linbottom_size, linleft_num, linleft_size, linright_num, 2023-10-04T11:32:44,443 | ^~~~~~~~~~~~ 2023-10-04T11:32:44,443 src/ViennaRNA/plotting/probabilities.c:296:35: warning: variable ‘linleft_num’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:44,444 296 | linbottom_size, linleft_num, linleft_size, linright_num, 2023-10-04T11:32:44,444 | ^~~~~~~~~~~ 2023-10-04T11:32:44,444 src/ViennaRNA/plotting/probabilities.c:295:47: warning: variable ‘linbottom_num’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:44,444 295 | int i, lintop_num, lintop_size, linbottom_num, 2023-10-04T11:32:44,444 | ^~~~~~~~~~~~~ 2023-10-04T11:32:44,444 src/ViennaRNA/plotting/probabilities.c:295:22: warning: variable ‘lintop_num’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:44,444 295 | int i, lintop_num, lintop_size, linbottom_num, 2023-10-04T11:32:44,445 | ^~~~~~~~~~ 2023-10-04T11:32:44,452 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_accessibility’: 2023-10-04T11:32:44,453 src/ViennaRNA/plotting/probabilities.c:847:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:44,453 847 | for(i = 0; i < length; i++){ 2023-10-04T11:32:44,453 | ^ 2023-10-04T11:32:44,453 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_ud_motif_prob’: 2023-10-04T11:32:44,454 src/ViennaRNA/plotting/probabilities.c:880:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:32:44,454 880 | for(i = 0; i < actual_length; i++, actual_pos++){ 2023-10-04T11:32:44,454 | ^ 2023-10-04T11:32:44,474 In file included from src/ViennaRNA/plotting/probabilities.c:28: 2023-10-04T11:32:44,474 At top level: 2023-10-04T11:32:44,474 src/ViennaRNA/plotting/ps_helpers.inc:151:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2023-10-04T11:32:44,474 151 | print_PS_coords(FILE *fh, 2023-10-04T11:32:44,474 | ^~~~~~~~~~~~~~~ 2023-10-04T11:32:45,576 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/structures.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/structures.o -fopenmp 2023-10-04T11:32:45,801 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/svgArcs.inc:14, 2023-10-04T11:32:45,802 from src/ViennaRNA/plotting/structures.c:28: 2023-10-04T11:32:45,802 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-10-04T11:32:45,802 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:799:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:45,802 799 | double alpha[3]; 2023-10-04T11:32:45,803 | ^~~~~ 2023-10-04T11:32:45,877 src/ViennaRNA/plotting/structures.c: In function ‘rnaplot_EPS’: 2023-10-04T11:32:45,877 src/ViennaRNA/plotting/structures.c:171:18: warning: unused variable ‘Y’ [-Wunused-variable] 2023-10-04T11:32:45,877 171 | float *X, *Y; 2023-10-04T11:32:45,877 | ^ 2023-10-04T11:32:45,877 src/ViennaRNA/plotting/structures.c:171:14: warning: unused variable ‘X’ [-Wunused-variable] 2023-10-04T11:32:45,878 171 | float *X, *Y; 2023-10-04T11:32:45,878 | ^ 2023-10-04T11:32:45,878 src/ViennaRNA/plotting/structures.c:168:31: warning: unused variable ‘ymax’ [-Wunused-variable] 2023-10-04T11:32:45,878 168 | float xmin, xmax, ymin, ymax; 2023-10-04T11:32:45,878 | ^~~~ 2023-10-04T11:32:45,878 src/ViennaRNA/plotting/structures.c:168:25: warning: unused variable ‘ymin’ [-Wunused-variable] 2023-10-04T11:32:45,878 168 | float xmin, xmax, ymin, ymax; 2023-10-04T11:32:45,879 | ^~~~ 2023-10-04T11:32:45,879 src/ViennaRNA/plotting/structures.c:168:19: warning: unused variable ‘xmax’ [-Wunused-variable] 2023-10-04T11:32:45,879 168 | float xmin, xmax, ymin, ymax; 2023-10-04T11:32:45,879 | ^~~~ 2023-10-04T11:32:45,879 src/ViennaRNA/plotting/structures.c:168:13: warning: unused variable ‘xmin’ [-Wunused-variable] 2023-10-04T11:32:45,879 168 | float xmin, xmax, ymin, ymax; 2023-10-04T11:32:45,879 | ^~~~ 2023-10-04T11:32:45,886 src/ViennaRNA/plotting/structures.c: In function ‘PS_rna_plot_snoop_a’: 2023-10-04T11:32:45,886 src/ViennaRNA/plotting/structures.c:632:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:32:45,886 632 | if (cut_point > 0 && cut_point <= strlen(string)) 2023-10-04T11:32:45,886 | ^~ 2023-10-04T11:32:45,914 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/svgArcs.inc:14, 2023-10-04T11:32:45,914 from src/ViennaRNA/plotting/structures.c:28: 2023-10-04T11:32:45,914 At top level: 2023-10-04T11:32:45,914 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:792:1: warning: ‘circle’ defined but not used [-Wunused-function] 2023-10-04T11:32:45,915 792 | circle(const double P1[2], 2023-10-04T11:32:45,915 | ^~~~~~ 2023-10-04T11:32:45,915 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:764:1: warning: ‘normal’ defined but not used [-Wunused-function] 2023-10-04T11:32:45,915 764 | normal(const double v[2], 2023-10-04T11:32:45,915 | ^~~~~~ 2023-10-04T11:32:45,915 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:754:1: warning: ‘vector’ defined but not used [-Wunused-function] 2023-10-04T11:32:45,915 754 | vector(const double pStart[2], 2023-10-04T11:32:45,916 | ^~~~~~ 2023-10-04T11:32:45,916 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:723:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2023-10-04T11:32:45,916 723 | getCutPointsOfCircleAndLine(const double *center, 2023-10-04T11:32:45,916 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:45,916 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:608:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2023-10-04T11:32:45,916 608 | getCutPointsOfCircles(const double *c1, 2023-10-04T11:32:45,917 | ^~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:45,917 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:568:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2023-10-04T11:32:45,917 568 | translatePointByVector(const double *point, 2023-10-04T11:32:45,917 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:45,917 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:555:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2023-10-04T11:32:45,917 555 | rotateVectorByAngle(const double *vector, 2023-10-04T11:32:45,917 | ^~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:45,917 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:506:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-10-04T11:32:45,918 506 | normalizeAngle(const double angle, 2023-10-04T11:32:45,918 | ^~~~~~~~~~~~~~ 2023-10-04T11:32:45,918 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:490:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2023-10-04T11:32:45,918 490 | anglePtPtPt2D(const double *p1, 2023-10-04T11:32:45,918 | ^~~~~~~~~~~~~ 2023-10-04T11:32:45,918 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:446:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2023-10-04T11:32:45,918 446 | isToTheRightPointVector(const double *lineStart, 2023-10-04T11:32:45,918 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:45,918 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:359:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2023-10-04T11:32:45,919 359 | vectorLength2DSquared(const double vector[2]) 2023-10-04T11:32:45,919 | ^~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:32:45,919 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:342:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2023-10-04T11:32:45,919 342 | toRad(double angle) 2023-10-04T11:32:45,919 | ^~~~~ 2023-10-04T11:32:45,919 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:335:1: warning: ‘toDegree’ defined but not used [-Wunused-function] 2023-10-04T11:32:45,919 335 | toDegree(double angle) 2023-10-04T11:32:45,920 | ^~~~~~~~ 2023-10-04T11:32:45,920 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14, 2023-10-04T11:32:45,920 from src/ViennaRNA/plotting/RNApuzzler/includes/svgArcs.inc:14, 2023-10-04T11:32:45,920 from src/ViennaRNA/plotting/structures.c:28: 2023-10-04T11:32:45,920 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-10-04T11:32:45,920 116 | angleToDistance(const double radius, 2023-10-04T11:32:45,920 | ^~~~~~~~~~~~~~~ 2023-10-04T11:32:45,920 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2023-10-04T11:32:45,921 108 | distanceToAngle(const double radius, 2023-10-04T11:32:45,921 | ^~~~~~~~~~~~~~~ 2023-10-04T11:32:45,921 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2023-10-04T11:32:45,921 62 | bubblesort(const int numValues, 2023-10-04T11:32:45,921 | ^~~~~~~~~~ 2023-10-04T11:32:47,039 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/ribo.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ribo.o -fopenmp 2023-10-04T11:32:48,883 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/search/BoyerMoore.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/search/BoyerMoore.o -fopenmp 2023-10-04T11:32:49,221 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/sequence.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/sequence.o -fopenmp 2023-10-04T11:32:49,959 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/snofold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/snofold.o -fopenmp 2023-10-04T11:32:50,153 src/ViennaRNA/snofold.c: In function ‘snofold’: 2023-10-04T11:32:50,153 src/ViennaRNA/snofold.c:369:30: warning: variable ‘bonus_cnt’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:50,153 369 | int length, energy, bonus, bonus_cnt, s; 2023-10-04T11:32:50,153 | ^~~~~~~~~ 2023-10-04T11:32:50,154 src/ViennaRNA/snofold.c:369:23: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:50,154 369 | int length, energy, bonus, bonus_cnt, s; 2023-10-04T11:32:50,154 | ^~~~~ 2023-10-04T11:32:50,157 src/ViennaRNA/snofold.c: In function ‘alisnofold’: 2023-10-04T11:32:50,158 src/ViennaRNA/snofold.c:571:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:32:50,158 571 | if (strlen(strings[s]) != length) 2023-10-04T11:32:50,158 | ^~ 2023-10-04T11:32:50,162 src/ViennaRNA/snofold.c: In function ‘alifill_arrays’: 2023-10-04T11:32:50,162 src/ViennaRNA/snofold.c:603:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:50,162 603 | int bonus, n_seq, s; 2023-10-04T11:32:50,162 | ^~~~~ 2023-10-04T11:32:50,165 src/ViennaRNA/snofold.c: In function ‘alibacktrack’: 2023-10-04T11:32:50,165 src/ViennaRNA/snofold.c:767:34: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:50,166 767 | int ml, ss, cij, traced, i1, j1, p, q; 2023-10-04T11:32:50,166 | ^~ 2023-10-04T11:32:50,166 src/ViennaRNA/snofold.c:767:30: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:50,166 767 | int ml, ss, cij, traced, i1, j1, p, q; 2023-10-04T11:32:50,166 | ^~ 2023-10-04T11:32:50,166 src/ViennaRNA/snofold.c:754:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:50,166 754 | int bonus, n_seq, *type; 2023-10-04T11:32:50,166 | ^~~~~ 2023-10-04T11:32:50,174 src/ViennaRNA/snofold.c: In function ‘backtrack’: 2023-10-04T11:32:50,175 src/ViennaRNA/snofold.c:1132:30: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:50,175 1132 | int ml, cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2023-10-04T11:32:50,175 | ^~ 2023-10-04T11:32:50,175 src/ViennaRNA/snofold.c:1132:26: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:50,176 1132 | int ml, cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2023-10-04T11:32:50,176 | ^~ 2023-10-04T11:32:50,176 src/ViennaRNA/snofold.c: In function ‘alisnobacktrack_fold_from_pair’: 2023-10-04T11:32:50,177 src/ViennaRNA/snofold.c:1290:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-04T11:32:50,177 1290 | if (strlen(strings[s]) != length) 2023-10-04T11:32:50,177 | ^~ 2023-10-04T11:32:50,205 At top level: 2023-10-04T11:32:50,205 src/ViennaRNA/snofold.c:154:15: warning: ‘alpha’ defined but not used [-Wunused-variable] 2023-10-04T11:32:50,205 154 | PRIVATE char alpha[] = "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz"; 2023-10-04T11:32:50,205 | ^~~~~ 2023-10-04T11:32:52,225 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/snoop.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/snoop.o -fopenmp 2023-10-04T11:32:52,431 src/ViennaRNA/snoop.c: In function ‘alisnoopfold’: 2023-10-04T11:32:52,432 src/ViennaRNA/snoop.c:249:22: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,432 249 | int i, j, E, l1, Emin = INF, i_min = 0, j_min = 0; 2023-10-04T11:32:52,432 | ^~ 2023-10-04T11:32:52,440 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack’: 2023-10-04T11:32:52,440 src/ViennaRNA/snoop.c:836:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,440 836 | int min_k, max_k; 2023-10-04T11:32:52,441 | ^~~~~ 2023-10-04T11:32:52,441 src/ViennaRNA/snoop.c:836:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,441 836 | int min_k, max_k; 2023-10-04T11:32:52,441 | ^~~~~ 2023-10-04T11:32:52,451 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt’: 2023-10-04T11:32:52,452 src/ViennaRNA/snoop.c:1141:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,452 1141 | int Loop_E; 2023-10-04T11:32:52,452 | ^~~~~~ 2023-10-04T11:32:52,452 src/ViennaRNA/snoop.c:1139:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,452 1139 | int Loop_D; 2023-10-04T11:32:52,452 | ^~~~~~ 2023-10-04T11:32:52,453 src/ViennaRNA/snoop.c:1138:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,453 1138 | int Duplex_El, Duplex_Er; 2023-10-04T11:32:52,453 | ^~~~~~~~~ 2023-10-04T11:32:52,453 src/ViennaRNA/snoop.c:1138:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,453 1138 | int Duplex_El, Duplex_Er; 2023-10-04T11:32:52,453 | ^~~~~~~~~ 2023-10-04T11:32:52,454 src/ViennaRNA/snoop.c:1112:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,454 1112 | int max_pos; 2023-10-04T11:32:52,454 | ^~~~~~~ 2023-10-04T11:32:52,457 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list’: 2023-10-04T11:32:52,458 src/ViennaRNA/snoop.c:1433:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,458 1433 | int min_k, max_k; 2023-10-04T11:32:52,458 | ^~~~~ 2023-10-04T11:32:52,458 src/ViennaRNA/snoop.c:1433:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,458 1433 | int min_k, max_k; 2023-10-04T11:32:52,458 | ^~~~~ 2023-10-04T11:32:52,463 src/ViennaRNA/snoop.c:1376:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,463 1376 | int Loop_E; 2023-10-04T11:32:52,463 | ^~~~~~ 2023-10-04T11:32:52,463 src/ViennaRNA/snoop.c:1374:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,464 1374 | int Loop_D; 2023-10-04T11:32:52,464 | ^~~~~~ 2023-10-04T11:32:52,464 src/ViennaRNA/snoop.c:1373:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,464 1373 | int Duplex_El, Duplex_Er; 2023-10-04T11:32:52,464 | ^~~~~~~~~ 2023-10-04T11:32:52,465 src/ViennaRNA/snoop.c:1373:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,465 1373 | int Duplex_El, Duplex_Er; 2023-10-04T11:32:52,465 | ^~~~~~~~~ 2023-10-04T11:32:52,465 src/ViennaRNA/snoop.c:1347:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,466 1347 | int max_pos; 2023-10-04T11:32:52,466 | ^~~~~~~ 2023-10-04T11:32:52,472 src/ViennaRNA/snoop.c: In function ‘snoopfold’: 2023-10-04T11:32:52,472 src/ViennaRNA/snoop.c:1818:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,473 1818 | int min_k, max_k; 2023-10-04T11:32:52,473 | ^~~~~ 2023-10-04T11:32:52,473 src/ViennaRNA/snoop.c:1818:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,473 1818 | int min_k, max_k; 2023-10-04T11:32:52,474 | ^~~~~ 2023-10-04T11:32:52,477 src/ViennaRNA/snoop.c:1764:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,477 1764 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-10-04T11:32:52,478 | ^~ 2023-10-04T11:32:52,481 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS_fill’: 2023-10-04T11:32:52,482 src/ViennaRNA/snoop.c:2015:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,482 2015 | int min_k, max_k; 2023-10-04T11:32:52,482 | ^~~~~ 2023-10-04T11:32:52,483 src/ViennaRNA/snoop.c:2015:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,483 2015 | int min_k, max_k; 2023-10-04T11:32:52,483 | ^~~~~ 2023-10-04T11:32:52,486 src/ViennaRNA/snoop.c:1959:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,486 1959 | int Loop_E; 2023-10-04T11:32:52,486 | ^~~~~~ 2023-10-04T11:32:52,487 src/ViennaRNA/snoop.c:1957:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,487 1957 | int Loop_D; 2023-10-04T11:32:52,487 | ^~~~~~ 2023-10-04T11:32:52,488 src/ViennaRNA/snoop.c:1956:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,488 1956 | int Duplex_El, Duplex_Er; 2023-10-04T11:32:52,488 | ^~~~~~~~~ 2023-10-04T11:32:52,489 src/ViennaRNA/snoop.c:1956:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,489 1956 | int Duplex_El, Duplex_Er; 2023-10-04T11:32:52,489 | ^~~~~~~~~ 2023-10-04T11:32:52,490 src/ViennaRNA/snoop.c:1947:42: warning: variable ‘j_min’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,490 1947 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2023-10-04T11:32:52,490 | ^~~~~ 2023-10-04T11:32:52,491 src/ViennaRNA/snoop.c:1947:31: warning: variable ‘i_min’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,491 1947 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2023-10-04T11:32:52,491 | ^~~~~ 2023-10-04T11:32:52,495 src/ViennaRNA/snoop.c: In function ‘snoop_subopt’: 2023-10-04T11:32:52,496 src/ViennaRNA/snoop.c:2102:25: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,496 2102 | int i, j, n1, n2, E, n_subopt = 0, n_max; 2023-10-04T11:32:52,496 | ^ 2023-10-04T11:32:52,501 src/ViennaRNA/snoop.c: In function ‘snoop_subopt_XS’: 2023-10-04T11:32:52,503 src/ViennaRNA/snoop.c:2437:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,503 2437 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2023-10-04T11:32:52,503 | ^~~~ 2023-10-04T11:32:52,504 src/ViennaRNA/snoop.c:2437:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,504 2437 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2023-10-04T11:32:52,504 | ^~~ 2023-10-04T11:32:52,505 src/ViennaRNA/snoop.c:2304:7: warning: variable ‘u’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,505 2304 | int u; 2023-10-04T11:32:52,506 | ^ 2023-10-04T11:32:52,506 src/ViennaRNA/snoop.c:2298:7: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,507 2298 | int Loop_D; 2023-10-04T11:32:52,507 | ^~~~~~ 2023-10-04T11:32:52,508 src/ViennaRNA/snoop.c:2297:29: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,508 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-10-04T11:32:52,508 | ^~~~~~ 2023-10-04T11:32:52,509 src/ViennaRNA/snoop.c:2297:18: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,509 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-10-04T11:32:52,509 | ^~~~~~~~~ 2023-10-04T11:32:52,510 src/ViennaRNA/snoop.c:2297:7: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,510 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-10-04T11:32:52,510 | ^~~~~~~~~ 2023-10-04T11:32:52,511 src/ViennaRNA/snoop.c:2289:16: warning: variable ‘n_max’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,511 2289 | int i, j, E, n_max; 2023-10-04T11:32:52,511 | ^~~~~ 2023-10-04T11:32:52,512 src/ViennaRNA/snoop.c:2289:13: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,512 2289 | int i, j, E, n_max; 2023-10-04T11:32:52,513 | ^ 2023-10-04T11:32:52,517 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack’: 2023-10-04T11:32:52,518 src/ViennaRNA/snoop.c:2588:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,518 2588 | int min_k, max_k; 2023-10-04T11:32:52,518 | ^~~~~ 2023-10-04T11:32:52,519 src/ViennaRNA/snoop.c:2588:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,520 2588 | int min_k, max_k; 2023-10-04T11:32:52,520 | ^~~~~ 2023-10-04T11:32:52,530 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2023-10-04T11:32:52,532 src/ViennaRNA/snoop.c:2907:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,532 2907 | int min_k, max_k; 2023-10-04T11:32:52,532 | ^~~~~ 2023-10-04T11:32:52,533 src/ViennaRNA/snoop.c:2907:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,534 2907 | int min_k, max_k; 2023-10-04T11:32:52,534 | ^~~~~ 2023-10-04T11:32:52,538 src/ViennaRNA/snoop.c:2842:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,539 2842 | int Loop_E; 2023-10-04T11:32:52,539 | ^~~~~~ 2023-10-04T11:32:52,540 src/ViennaRNA/snoop.c:2840:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,540 2840 | int Loop_D; 2023-10-04T11:32:52,540 | ^~~~~~ 2023-10-04T11:32:52,541 src/ViennaRNA/snoop.c:2839:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,541 2839 | int Duplex_El, Duplex_Er; 2023-10-04T11:32:52,542 | ^~~~~~~~~ 2023-10-04T11:32:52,543 src/ViennaRNA/snoop.c:2839:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,543 2839 | int Duplex_El, Duplex_Er; 2023-10-04T11:32:52,543 | ^~~~~~~~~ 2023-10-04T11:32:52,544 src/ViennaRNA/snoop.c:2824:7: warning: variable ‘max_pos_j’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,544 2824 | int max_pos_j = INF; 2023-10-04T11:32:52,545 | ^~~~~~~~~ 2023-10-04T11:32:52,546 src/ViennaRNA/snoop.c:2810:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,546 2810 | int max_pos; 2023-10-04T11:32:52,546 | ^~~~~~~ 2023-10-04T11:32:52,550 src/ViennaRNA/snoop.c: In function ‘find_max_snoop_XS’: 2023-10-04T11:32:52,552 src/ViennaRNA/snoop.c:3155:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,552 3155 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2023-10-04T11:32:52,552 | ^~~~ 2023-10-04T11:32:52,554 src/ViennaRNA/snoop.c:3155:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:32:52,554 3155 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2023-10-04T11:32:52,554 | ^~~ 2023-10-04T11:32:53,353 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack.constprop’: 2023-10-04T11:32:53,354 src/ViennaRNA/snoop.c:2524:12: warning: ‘struc_loop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:32:53,354 2524 | char *struc_loop; 2023-10-04T11:32:53,354 | ^~~~~~~~~~ 2023-10-04T11:32:53,848 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack.constprop’: 2023-10-04T11:32:53,848 src/ViennaRNA/snoop.c:736:10: warning: ‘struc_loop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:32:53,849 736 | char *struc_loop; 2023-10-04T11:32:53,849 | ^~~~~~~~~~ 2023-10-04T11:32:57,202 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS’: 2023-10-04T11:32:57,204 src/ViennaRNA/snoop.c:3418:10: warning: ‘u’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:32:57,204 3418 | return mfe; 2023-10-04T11:32:57,204 | ^~~ 2023-10-04T11:32:57,206 src/ViennaRNA/snoop.c:3451:12: warning: ‘struc_loop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:32:57,206 3451 | char *struc_loop; 2023-10-04T11:32:57,206 | ^~~~~~~~~~ 2023-10-04T11:32:58,186 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2023-10-04T11:32:58,187 src/ViennaRNA/snoop.c:2995:19: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:32:58,187 2995 | position_j[i] = min_j_colonne; 2023-10-04T11:32:58,188 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-10-04T11:32:58,905 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/special_const.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/special_const.o -fopenmp 2023-10-04T11:32:58,993 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/stringdist.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/stringdist.o -fopenmp 2023-10-04T11:32:59,830 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/subopt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/subopt.o -fopenmp 2023-10-04T11:33:00,096 In file included from src/ViennaRNA/subopt.c:48: 2023-10-04T11:33:00,097 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-10-04T11:33:00,097 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,097 865 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:33:00,097 | ^ 2023-10-04T11:33:00,097 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-10-04T11:33:00,098 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,098 898 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:33:00,098 | ^ 2023-10-04T11:33:00,098 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-10-04T11:33:00,098 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,098 969 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,099 | ^ 2023-10-04T11:33:00,099 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-10-04T11:33:00,099 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,099 993 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,099 | ^ 2023-10-04T11:33:00,100 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-10-04T11:33:00,100 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,101 1121 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,101 | ^ 2023-10-04T11:33:00,101 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-10-04T11:33:00,101 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,101 1145 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,101 | ^ 2023-10-04T11:33:00,103 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-10-04T11:33:00,103 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,103 1292 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:33:00,103 | ^ 2023-10-04T11:33:00,104 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-10-04T11:33:00,104 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,104 1320 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:33:00,104 | ^ 2023-10-04T11:33:00,104 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-10-04T11:33:00,105 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,105 1348 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:33:00,105 | ^ 2023-10-04T11:33:00,105 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-10-04T11:33:00,106 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,106 1404 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,106 | ^ 2023-10-04T11:33:00,106 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-10-04T11:33:00,107 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,107 1426 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,107 | ^ 2023-10-04T11:33:00,107 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-10-04T11:33:00,108 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,108 1450 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,108 | ^ 2023-10-04T11:33:00,110 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-10-04T11:33:00,110 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,110 1596 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:33:00,110 | ^ 2023-10-04T11:33:00,111 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-10-04T11:33:00,111 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,111 1628 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:33:00,111 | ^ 2023-10-04T11:33:00,112 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-10-04T11:33:00,112 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,112 1677 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,113 | ^ 2023-10-04T11:33:00,113 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-10-04T11:33:00,113 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,114 1698 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,114 | ^ 2023-10-04T11:33:00,123 In file included from src/ViennaRNA/subopt.c:50: 2023-10-04T11:33:00,123 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-10-04T11:33:00,123 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,124 71 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,124 | ^ 2023-10-04T11:33:00,124 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-10-04T11:33:00,124 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,124 110 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,124 | ^ 2023-10-04T11:33:00,124 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-10-04T11:33:00,125 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,125 141 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,125 | ^ 2023-10-04T11:33:00,125 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-10-04T11:33:00,125 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,125 183 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,126 | ^ 2023-10-04T11:33:00,126 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-10-04T11:33:00,126 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,126 222 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,126 | ^ 2023-10-04T11:33:00,130 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-10-04T11:33:00,130 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,130 726 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,130 | ^ 2023-10-04T11:33:00,131 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-10-04T11:33:00,131 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:00,131 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-10-04T11:33:00,132 | ^~ 2023-10-04T11:33:00,132 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-10-04T11:33:00,132 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,132 780 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,132 | ^ 2023-10-04T11:33:00,134 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-10-04T11:33:00,134 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,134 821 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,134 | ^ 2023-10-04T11:33:00,141 In file included from src/ViennaRNA/subopt.c:51: 2023-10-04T11:33:00,141 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-10-04T11:33:00,142 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,142 76 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,142 | ^ 2023-10-04T11:33:00,142 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-10-04T11:33:00,142 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,142 95 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,143 | ^ 2023-10-04T11:33:00,143 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-10-04T11:33:00,143 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,143 124 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,143 | ^ 2023-10-04T11:33:00,143 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-10-04T11:33:00,143 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,144 155 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,144 | ^ 2023-10-04T11:33:00,144 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-10-04T11:33:00,145 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,145 328 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,145 | ^ 2023-10-04T11:33:00,145 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-10-04T11:33:00,146 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,146 397 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,146 | ^ 2023-10-04T11:33:00,147 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-10-04T11:33:00,147 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,147 530 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,147 | ^ 2023-10-04T11:33:00,148 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-10-04T11:33:00,148 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,148 663 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,149 | ^ 2023-10-04T11:33:00,150 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-10-04T11:33:00,150 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,150 802 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,150 | ^ 2023-10-04T11:33:00,151 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-10-04T11:33:00,151 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,151 849 | for (s = 0; s < data->n_seq; s++) { 2023-10-04T11:33:00,152 | ^ 2023-10-04T11:33:00,152 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-10-04T11:33:00,152 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,152 888 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,153 | ^ 2023-10-04T11:33:00,153 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-10-04T11:33:00,153 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,154 947 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,154 | ^ 2023-10-04T11:33:00,154 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-10-04T11:33:00,155 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,155 983 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,155 | ^ 2023-10-04T11:33:00,155 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-10-04T11:33:00,156 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,156 1020 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,156 | ^ 2023-10-04T11:33:00,157 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-10-04T11:33:00,157 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,157 1079 | for (s = 0; s < data->n_seq; s++) 2023-10-04T11:33:00,157 | ^ 2023-10-04T11:33:00,173 src/ViennaRNA/subopt.c: In function ‘vrna_subopt_cb’: 2023-10-04T11:33:00,173 src/ViennaRNA/subopt.c:519:29: warning: variable ‘ss’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:33:00,173 519 | unsigned int *so, *ss; 2023-10-04T11:33:00,173 | ^~ 2023-10-04T11:33:00,173 src/ViennaRNA/subopt.c:519:24: warning: variable ‘so’ set but not used [-Wunused-but-set-variable] 2023-10-04T11:33:00,173 519 | unsigned int *so, *ss; 2023-10-04T11:33:00,174 | ^~ 2023-10-04T11:33:00,202 src/ViennaRNA/subopt.c: In function ‘scan_fms3’: 2023-10-04T11:33:00,203 src/ViennaRNA/subopt.c:2475:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,203 2475 | s3 = ((i < length) && (sn[i] == sn[i + 1])) ? S1[i + 1] : -1; 2023-10-04T11:33:00,204 | ^ 2023-10-04T11:33:00,207 src/ViennaRNA/subopt.c:2557:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,207 2557 | s3 = ((i < length) && (sn[i] == sn[i + 1])) ? S1[i + 1] : -1; 2023-10-04T11:33:00,207 | ^ 2023-10-04T11:33:00,217 src/ViennaRNA/subopt.c: In function ‘repeat’: 2023-10-04T11:33:00,218 src/ViennaRNA/subopt.c:2924:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,219 2924 | if (se[sn[i]] > i) 2023-10-04T11:33:00,219 | ^ 2023-10-04T11:33:00,220 src/ViennaRNA/subopt.c:2927:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:00,220 2927 | if (j - 1 > se[sn[i]]) 2023-10-04T11:33:00,220 | ^ 2023-10-04T11:33:00,222 src/ViennaRNA/subopt.c:2944:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:00,222 2944 | if (i + 1 <= se[sn[nick]]) 2023-10-04T11:33:00,222 | ^~ 2023-10-04T11:33:00,224 src/ViennaRNA/subopt.c:2947:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:00,224 2947 | if (se[sn[nick]] + 1 <= j - 1) 2023-10-04T11:33:00,224 | ^~ 2023-10-04T11:33:00,305 At top level: 2023-10-04T11:33:00,305 src/ViennaRNA/subopt.c:883:1: warning: ‘print_stack’ defined but not used [-Wunused-function] 2023-10-04T11:33:00,306 883 | print_stack(LIST *list) 2023-10-04T11:33:00,306 | ^~~~~~~~~~~ 2023-10-04T11:33:08,384 In file included from src/ViennaRNA/subopt.c:54: 2023-10-04T11:33:08,385 src/ViennaRNA/subopt.c: In function ‘vrna_subopt’: 2023-10-04T11:33:08,385 src/ViennaRNA/color_output.inc:61:7: warning: ‘SeQ’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-04T11:33:08,385 61 | fprintf(fp, "%s\n", structure); 2023-10-04T11:33:08,385 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-04T11:33:08,386 src/ViennaRNA/subopt.c:435:14: note: ‘SeQ’ was declared here 2023-10-04T11:33:08,386 435 | char *SeQ, *energies = NULL; 2023-10-04T11:33:08,386 | ^~~ 2023-10-04T11:33:09,200 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/subopt_zuker.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/subopt_zuker.o -fopenmp 2023-10-04T11:33:09,347 src/ViennaRNA/subopt_zuker.c: In function ‘vrna_subopt_zuker’: 2023-10-04T11:33:09,348 src/ViennaRNA/subopt_zuker.c:256:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:09,348 256 | if (hc->up_int[l + 1] < u2) 2023-10-04T11:33:09,348 | ^ 2023-10-04T11:33:09,349 src/ViennaRNA/subopt_zuker.c:268:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:09,349 268 | if (hc->up_int[i + 1] < u1) 2023-10-04T11:33:09,349 | ^ 2023-10-04T11:33:09,350 src/ViennaRNA/subopt_zuker.c:302:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:09,350 302 | if ((hc->up_ml[i + 1] >= u) && 2023-10-04T11:33:09,350 | ^~ 2023-10-04T11:33:09,360 src/ViennaRNA/subopt_zuker.c: In function ‘backtrack’: 2023-10-04T11:33:09,361 src/ViennaRNA/subopt_zuker.c:788:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:09,361 788 | if (hc->up_int[i + 1] < u1) 2023-10-04T11:33:09,361 | ^ 2023-10-04T11:33:09,363 src/ViennaRNA/subopt_zuker.c:800:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:09,363 800 | if (hc->up_int[l + 1] < u2) 2023-10-04T11:33:09,363 | ^ 2023-10-04T11:33:09,365 src/ViennaRNA/subopt_zuker.c:857:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:09,365 857 | if (hc->up_ml[i + 1] < u1) 2023-10-04T11:33:09,365 | ^ 2023-10-04T11:33:09,367 src/ViennaRNA/subopt_zuker.c:898:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:09,367 898 | if ((hc->up_ml[i + 1] >= u1) && 2023-10-04T11:33:09,368 | ^~ 2023-10-04T11:33:11,385 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/treedist.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/treedist.o -fopenmp 2023-10-04T11:33:11,515 src/ViennaRNA/treedist.c: In function ‘sprint_aligned_trees’: 2023-10-04T11:33:11,516 src/ViennaRNA/treedist.c:724:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:33:11,516 724 | for (k = 0; k < strlen(ll); k++) { 2023-10-04T11:33:11,516 | ^ 2023-10-04T11:33:11,517 src/ViennaRNA/treedist.c:745:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:33:11,518 745 | for (k = 0; k < strlen(ll); k++) { 2023-10-04T11:33:11,518 | ^ 2023-10-04T11:33:11,519 src/ViennaRNA/treedist.c:771:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:33:11,519 771 | for (k = 0; k < strlen(ll) - strlen(ll1); k++) 2023-10-04T11:33:11,519 | ^ 2023-10-04T11:33:11,520 src/ViennaRNA/treedist.c:775:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:33:11,520 775 | for (k = 0; k < strlen(ll1) - strlen(ll); k++) 2023-10-04T11:33:11,521 | ^ 2023-10-04T11:33:11,521 src/ViennaRNA/treedist.c:778:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:33:11,522 778 | for (k = 0; k < strlen(ll); k++) 2023-10-04T11:33:11,522 | ^ 2023-10-04T11:33:11,522 src/ViennaRNA/treedist.c:780:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-04T11:33:11,523 780 | for (k = 0; k < strlen(ll); k++) 2023-10-04T11:33:11,523 | ^ 2023-10-04T11:33:12,380 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/unstructured_domains.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/unstructured_domains.o -fopenmp 2023-10-04T11:33:12,557 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_motifs_centroid’: 2023-10-04T11:33:12,558 src/ViennaRNA/unstructured_domains.c:366:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:12,559 366 | for (m = 0; m < domains_up->motif_count; m++) { 2023-10-04T11:33:12,559 | ^ 2023-10-04T11:33:12,561 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_motifs_MEA’: 2023-10-04T11:33:12,561 src/ViennaRNA/unstructured_domains.c:435:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:12,561 435 | for (i = ptr->i; i <= ptr->j; i++) 2023-10-04T11:33:12,561 | ^~ 2023-10-04T11:33:12,564 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_get_motif_size_at’: 2023-10-04T11:33:12,564 src/ViennaRNA/unstructured_domains.c:679:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:12,565 679 | if ((i > 0) && (i <= vc->length)) { 2023-10-04T11:33:12,565 | ^~ 2023-10-04T11:33:12,566 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_get_motifs_at’: 2023-10-04T11:33:12,567 src/ViennaRNA/unstructured_domains.c:722:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:12,567 722 | if ((i > 0) && (i <= vc->length)) 2023-10-04T11:33:12,567 | ^~ 2023-10-04T11:33:12,568 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_detect_motifs’: 2023-10-04T11:33:12,568 src/ViennaRNA/unstructured_domains.c:748:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:12,568 748 | while (l < vc->length) { 2023-10-04T11:33:12,568 | ^ 2023-10-04T11:33:12,569 src/ViennaRNA/unstructured_domains.c:750:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:12,569 750 | while (l < vc->length) { 2023-10-04T11:33:12,569 | ^ 2023-10-04T11:33:12,570 src/ViennaRNA/unstructured_domains.c:757:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:12,570 757 | if (l < vc->length) { 2023-10-04T11:33:12,570 | ^ 2023-10-04T11:33:12,570 src/ViennaRNA/unstructured_domains.c:761:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:12,571 761 | if (l == vc->length) 2023-10-04T11:33:12,571 | ^~ 2023-10-04T11:33:12,578 src/ViennaRNA/unstructured_domains.c: In function ‘fill_MFE_matrix’: 2023-10-04T11:33:12,578 src/ViennaRNA/unstructured_domains.c:1122:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:12,578 1122 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-10-04T11:33:12,579 | ^ 2023-10-04T11:33:12,579 src/ViennaRNA/unstructured_domains.c:1138:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:12,580 1138 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-10-04T11:33:12,580 | ^ 2023-10-04T11:33:12,580 src/ViennaRNA/unstructured_domains.c:1140:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:12,581 1140 | if (u <= d) { 2023-10-04T11:33:12,581 | ^~ 2023-10-04T11:33:12,581 src/ViennaRNA/unstructured_domains.c:1147:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-04T11:33:12,582 1147 | if (u < d) 2023-10-04T11:33:12,582 | ^ 2023-10-04T11:33:12,583 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MFE_matrix’: 2023-10-04T11:33:12,583 src/ViennaRNA/unstructured_domains.c:1185:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:12,583 1185 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-10-04T11:33:12,583 | ^ 2023-10-04T11:33:12,584 src/ViennaRNA/unstructured_domains.c:1201:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:12,585 1201 | for (k = 0; k < domains_up->motif_count; k++) 2023-10-04T11:33:12,585 | ^ 2023-10-04T11:33:12,586 src/ViennaRNA/unstructured_domains.c:1230:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:12,587 1230 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-10-04T11:33:12,587 | ^ 2023-10-04T11:33:12,588 src/ViennaRNA/unstructured_domains.c:1240:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:12,588 1240 | for (k = 0; k < domains_up->motif_count; k++) 2023-10-04T11:33:12,588 | ^ 2023-10-04T11:33:12,590 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MFE_matrix_exhaustive’: 2023-10-04T11:33:12,591 src/ViennaRNA/unstructured_domains.c:1352:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:12,591 1352 | for (k = 0; k < domains_up->uniq_motif_count; k++) { 2023-10-04T11:33:12,591 | ^ 2023-10-04T11:33:12,592 src/ViennaRNA/unstructured_domains.c:1367:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:12,592 1367 | for (m = 0; m < domains_up->uniq_motif_count; m++) 2023-10-04T11:33:12,593 | ^ 2023-10-04T11:33:12,594 src/ViennaRNA/unstructured_domains.c:1394:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:12,594 1394 | for (m = 0; m < domains_up->uniq_motif_count; m++) 2023-10-04T11:33:12,594 | ^ 2023-10-04T11:33:12,596 src/ViennaRNA/unstructured_domains.c: In function ‘fill_MEA_matrix’: 2023-10-04T11:33:12,596 src/ViennaRNA/unstructured_domains.c:1451:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:12,597 1451 | for (m = 0; m < domains_up->motif_count; m++) { 2023-10-04T11:33:12,597 | ^ 2023-10-04T11:33:12,598 src/ViennaRNA/unstructured_domains.c:1466:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:12,598 1466 | for (m = 0; m < domains_up->motif_count; m++) { 2023-10-04T11:33:12,598 | ^ 2023-10-04T11:33:12,600 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MEA_matrix’: 2023-10-04T11:33:12,601 src/ViennaRNA/unstructured_domains.c:1522:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:12,601 1522 | for (m = 0; m < domains_up->motif_count; m++) { 2023-10-04T11:33:12,601 | ^ 2023-10-04T11:33:12,603 src/ViennaRNA/unstructured_domains.c: In function ‘add_ligand_motif’: 2023-10-04T11:33:12,603 src/ViennaRNA/unstructured_domains.c:1600:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-04T11:33:12,604 1600 | for (same_size = i = 0; i < ud->uniq_motif_count; i++) { 2023-10-04T11:33:12,604 | ^ 2023-10-04T11:33:14,858 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/utils/cpu.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils/cpu.o -fopenmp 2023-10-04T11:33:15,019 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/utils/higher_order_functions.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils/higher_order_functions.o -fopenmp 2023-10-04T11:33:15,260 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.6.4\" -DHAVE_CONFIG_H -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/utils/higher_order_functions_avx512.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils/higher_order_functions_avx512.o -fopenmp -mavx512f 2023-10-04T11:33:15,275 arm-linux-gnueabihf-gcc: error: unrecognized command-line option ‘-mavx512f’ 2023-10-04T11:33:15,279 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-10-04T11:33:15,390 ERROR: [present-rich] Building wheel for viennarna (pyproject.toml) exited with 1 2023-10-04T11:33:15,408 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpl7azk_wa[/] 2023-10-04T11:33:15,409 [bold magenta]cwd[/]: /tmp/pip-wheel-0wve1u9m/viennarna_d2fdccf2c98f4c8280863c6686a56072 2023-10-04T11:33:15,409 Building wheel for viennarna (pyproject.toml): finished with status 'error' 2023-10-04T11:33:15,411 ERROR: Failed building wheel for viennarna 2023-10-04T11:33:15,413 Failed to build viennarna 2023-10-04T11:33:15,414 ERROR: Failed to build one or more wheels 2023-10-04T11:33:15,415 Exception information: 2023-10-04T11:33:15,415 Traceback (most recent call last): 2023-10-04T11:33:15,415 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-10-04T11:33:15,415 status = run_func(*args) 2023-10-04T11:33:15,415 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-10-04T11:33:15,415 return func(self, options, args) 2023-10-04T11:33:15,415 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-10-04T11:33:15,415 raise CommandError("Failed to build one or more wheels") 2023-10-04T11:33:15,415 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-10-04T11:33:15,420 Removed build tracker: '/tmp/pip-build-tracker-w679rz2x'