2023-11-14T02:17:50,246 Created temporary directory: /tmp/pip-build-tracker-qu3vylox 2023-11-14T02:17:50,247 Initialized build tracking at /tmp/pip-build-tracker-qu3vylox 2023-11-14T02:17:50,248 Created build tracker: /tmp/pip-build-tracker-qu3vylox 2023-11-14T02:17:50,248 Entered build tracker: /tmp/pip-build-tracker-qu3vylox 2023-11-14T02:17:50,249 Created temporary directory: /tmp/pip-wheel-8nd978jw 2023-11-14T02:17:50,253 Created temporary directory: /tmp/pip-ephem-wheel-cache-fag3fpth 2023-11-14T02:17:50,276 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-14T02:17:50,279 2 location(s) to search for versions of pymlst: 2023-11-14T02:17:50,279 * https://pypi.org/simple/pymlst/ 2023-11-14T02:17:50,279 * https://www.piwheels.org/simple/pymlst/ 2023-11-14T02:17:50,280 Fetching project page and analyzing links: https://pypi.org/simple/pymlst/ 2023-11-14T02:17:50,281 Getting page https://pypi.org/simple/pymlst/ 2023-11-14T02:17:50,282 Found index url https://pypi.org/simple/ 2023-11-14T02:17:50,537 Fetched page https://pypi.org/simple/pymlst/ as application/vnd.pypi.simple.v1+json 2023-11-14T02:17:50,540 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/c9/58/b20aff870603ed350a23e651f3051764f84411f47dce6a04fb7005da52a4/PyMLST-2.0.1-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-11-14T02:17:50,540 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/ee/ae/cb1ae640761c8bd7001800973a72b475552793dd99b8caa5e078f29a0faa/PyMLST-2.1.0-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-11-14T02:17:50,541 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/46/2d/d32aed32e3a77ae21226a144f0ca31b040907cfa65c6b0de4c95a49768bf/PyMLST-2.1.1-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-11-14T02:17:50,541 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/a1/ac/76b9312b65e1f7f7638b6eb46cecb9341c7d55a34a9796b96ce22366522f/PyMLST-2.1.2-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-11-14T02:17:50,542 Found link https://files.pythonhosted.org/packages/b8/96/cca409adee7a3c61adc124ac12da584545819427f10487a01d84eadc71c5/PyMLST-2.1.2.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.2 2023-11-14T02:17:50,543 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/79/fa/b291f5dbc74c78c7ff6f0e4225d1199d10d3e750c4273935f83327fbfedd/PyMLST-2.1.3-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-11-14T02:17:50,544 Found link https://files.pythonhosted.org/packages/f1/ee/77f0663a2221d7e44b07a14f74c6d3279c19640338e84f2c39ed984bb166/PyMLST-2.1.3.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.3 2023-11-14T02:17:50,545 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/58/2c/9087cc4a524d0ebf9a2104e229422266299f5e37d01d09f75d10288d7162/PyMLST-2.1.4-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-11-14T02:17:50,546 Found link https://files.pythonhosted.org/packages/58/54/4ddd2e96629a17bf60e728e48e53e47f0720710db9b1416b3d34716f9824/PyMLST-2.1.4.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.4 2023-11-14T02:17:50,547 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/10/24/f5fe2d09f56d6e608f0807a60f2734c2919a594bfeaee597af31dfc74324/PyMLST-2.1.5-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-11-14T02:17:50,547 Found link https://files.pythonhosted.org/packages/e4/b0/96c1a8c9399e5bb594048bf3c9cbedb1f1708d2bd251cd540460dfb343eb/PyMLST-2.1.5.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.5 2023-11-14T02:17:50,548 Fetching project page and analyzing links: https://www.piwheels.org/simple/pymlst/ 2023-11-14T02:17:50,549 Getting page https://www.piwheels.org/simple/pymlst/ 2023-11-14T02:17:50,551 Found index url https://www.piwheels.org/simple/ 2023-11-14T02:17:50,712 Fetched page https://www.piwheels.org/simple/pymlst/ as text/html 2023-11-14T02:17:50,714 Skipping link: No binaries permitted for pymlst: https://www.piwheels.org/simple/pymlst/PyMLST-2.1.4-py3-none-any.whl#sha256=1ef8f7966d09ce4aaf7cb04b9eb249944571ae0ea90baf0208af43def98b40aa (from https://www.piwheels.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-11-14T02:17:50,715 Skipping link: No binaries permitted for pymlst: https://www.piwheels.org/simple/pymlst/PyMLST-2.1.3-py3-none-any.whl#sha256=f2069f50ecc8c8b203e9257f5c011010e50959605a806e70142dfde35d0e77eb (from https://www.piwheels.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-11-14T02:17:50,716 Skipping link: No binaries permitted for pymlst: https://www.piwheels.org/simple/pymlst/PyMLST-2.1.2-py3-none-any.whl#sha256=23fec25be78d92f9683e799227d86c9a19ca909d5f9ecae088c1d70ef372395b (from https://www.piwheels.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-11-14T02:17:50,716 Skipping link: not a file: https://www.piwheels.org/simple/pymlst/ 2023-11-14T02:17:50,717 Skipping link: not a file: https://pypi.org/simple/pymlst/ 2023-11-14T02:17:50,737 Given no hashes to check 1 links for project 'pymlst': discarding no candidates 2023-11-14T02:17:50,757 Collecting pymlst==2.1.5 2023-11-14T02:17:50,759 Created temporary directory: /tmp/pip-unpack-xj1s13kx 2023-11-14T02:17:50,897 Downloading PyMLST-2.1.5.tar.gz (40 kB) 2023-11-14T02:17:51,068 Added pymlst==2.1.5 from https://files.pythonhosted.org/packages/e4/b0/96c1a8c9399e5bb594048bf3c9cbedb1f1708d2bd251cd540460dfb343eb/PyMLST-2.1.5.tar.gz to build tracker '/tmp/pip-build-tracker-qu3vylox' 2023-11-14T02:17:51,071 Running setup.py (path:/tmp/pip-wheel-8nd978jw/pymlst_45dadc82e54f4958930b96e3d926b90e/setup.py) egg_info for package pymlst 2023-11-14T02:17:51,072 Created temporary directory: /tmp/pip-pip-egg-info-j9ba0fqe 2023-11-14T02:17:51,072 Preparing metadata (setup.py): started 2023-11-14T02:17:51,073 Running command python setup.py egg_info 2023-11-14T02:17:51,575 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-11-14T02:17:51,575 !! 2023-11-14T02:17:51,576 ******************************************************************************** 2023-11-14T02:17:51,577 Usage of dash-separated 'description-file' will not be supported in future 2023-11-14T02:17:51,578 versions. Please use the underscore name 'description_file' instead. 2023-11-14T02:17:51,579 This deprecation is overdue, please update your project and remove deprecated 2023-11-14T02:17:51,580 calls to avoid build errors in the future. 2023-11-14T02:17:51,581 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-11-14T02:17:51,582 ******************************************************************************** 2023-11-14T02:17:51,583 !! 2023-11-14T02:17:51,583 opt = self.warn_dash_deprecation(opt, section) 2023-11-14T02:17:51,845 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-14T02:17:51,846 !! 2023-11-14T02:17:51,847 ******************************************************************************** 2023-11-14T02:17:51,848 Requirements should be satisfied by a PEP 517 installer. 2023-11-14T02:17:51,848 If you are using pip, you can try `pip install --use-pep517`. 2023-11-14T02:17:51,849 ******************************************************************************** 2023-11-14T02:17:51,850 !! 2023-11-14T02:17:51,851 dist.fetch_build_eggs(dist.setup_requires) 2023-11-14T02:17:52,192 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-11-14T02:17:52,193 !! 2023-11-14T02:17:52,194 ******************************************************************************** 2023-11-14T02:17:52,195 Usage of dash-separated 'description-file' will not be supported in future 2023-11-14T02:17:52,195 versions. Please use the underscore name 'description_file' instead. 2023-11-14T02:17:52,196 This deprecation is overdue, please update your project and remove deprecated 2023-11-14T02:17:52,197 calls to avoid build errors in the future. 2023-11-14T02:17:52,198 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-11-14T02:17:52,198 ******************************************************************************** 2023-11-14T02:17:52,200 !! 2023-11-14T02:17:52,200 opt = self.warn_dash_deprecation(opt, section) 2023-11-14T02:17:52,226 running egg_info 2023-11-14T02:17:52,228 creating /tmp/pip-pip-egg-info-j9ba0fqe/PyMLST.egg-info 2023-11-14T02:17:52,254 writing /tmp/pip-pip-egg-info-j9ba0fqe/PyMLST.egg-info/PKG-INFO 2023-11-14T02:17:52,258 writing dependency_links to /tmp/pip-pip-egg-info-j9ba0fqe/PyMLST.egg-info/dependency_links.txt 2023-11-14T02:17:52,259 writing entry points to /tmp/pip-pip-egg-info-j9ba0fqe/PyMLST.egg-info/entry_points.txt 2023-11-14T02:17:52,261 writing requirements to /tmp/pip-pip-egg-info-j9ba0fqe/PyMLST.egg-info/requires.txt 2023-11-14T02:17:52,262 writing top-level names to /tmp/pip-pip-egg-info-j9ba0fqe/PyMLST.egg-info/top_level.txt 2023-11-14T02:17:52,264 writing manifest file '/tmp/pip-pip-egg-info-j9ba0fqe/PyMLST.egg-info/SOURCES.txt' 2023-11-14T02:17:52,351 reading manifest file '/tmp/pip-pip-egg-info-j9ba0fqe/PyMLST.egg-info/SOURCES.txt' 2023-11-14T02:17:52,353 reading manifest template 'MANIFEST.in' 2023-11-14T02:17:52,356 adding license file 'LICENSE' 2023-11-14T02:17:52,359 writing manifest file '/tmp/pip-pip-egg-info-j9ba0fqe/PyMLST.egg-info/SOURCES.txt' 2023-11-14T02:17:52,472 Preparing metadata (setup.py): finished with status 'done' 2023-11-14T02:17:52,476 Source in /tmp/pip-wheel-8nd978jw/pymlst_45dadc82e54f4958930b96e3d926b90e has version 2.1.5, which satisfies requirement pymlst==2.1.5 from https://files.pythonhosted.org/packages/e4/b0/96c1a8c9399e5bb594048bf3c9cbedb1f1708d2bd251cd540460dfb343eb/PyMLST-2.1.5.tar.gz 2023-11-14T02:17:52,478 Removed pymlst==2.1.5 from https://files.pythonhosted.org/packages/e4/b0/96c1a8c9399e5bb594048bf3c9cbedb1f1708d2bd251cd540460dfb343eb/PyMLST-2.1.5.tar.gz from build tracker '/tmp/pip-build-tracker-qu3vylox' 2023-11-14T02:17:52,484 Created temporary directory: /tmp/pip-unpack-smg57c3r 2023-11-14T02:17:52,485 Created temporary directory: /tmp/pip-unpack-9p5_55ce 2023-11-14T02:17:52,503 Building wheels for collected packages: pymlst 2023-11-14T02:17:52,507 Created temporary directory: /tmp/pip-wheel-cwa70475 2023-11-14T02:17:52,507 Building wheel for pymlst (setup.py): started 2023-11-14T02:17:52,509 Destination directory: /tmp/pip-wheel-cwa70475 2023-11-14T02:17:52,509 Running command python setup.py bdist_wheel 2023-11-14T02:17:52,973 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-11-14T02:17:52,974 !! 2023-11-14T02:17:52,975 ******************************************************************************** 2023-11-14T02:17:52,976 Usage of dash-separated 'description-file' will not be supported in future 2023-11-14T02:17:52,976 versions. Please use the underscore name 'description_file' instead. 2023-11-14T02:17:52,978 This deprecation is overdue, please update your project and remove deprecated 2023-11-14T02:17:52,978 calls to avoid build errors in the future. 2023-11-14T02:17:52,980 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-11-14T02:17:52,981 ******************************************************************************** 2023-11-14T02:17:52,982 !! 2023-11-14T02:17:52,983 opt = self.warn_dash_deprecation(opt, section) 2023-11-14T02:17:53,233 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-14T02:17:53,234 !! 2023-11-14T02:17:53,235 ******************************************************************************** 2023-11-14T02:17:53,236 Requirements should be satisfied by a PEP 517 installer. 2023-11-14T02:17:53,236 If you are using pip, you can try `pip install --use-pep517`. 2023-11-14T02:17:53,237 ******************************************************************************** 2023-11-14T02:17:53,238 !! 2023-11-14T02:17:53,238 dist.fetch_build_eggs(dist.setup_requires) 2023-11-14T02:17:53,566 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-11-14T02:17:53,567 !! 2023-11-14T02:17:53,568 ******************************************************************************** 2023-11-14T02:17:53,569 Usage of dash-separated 'description-file' will not be supported in future 2023-11-14T02:17:53,569 versions. Please use the underscore name 'description_file' instead. 2023-11-14T02:17:53,570 This deprecation is overdue, please update your project and remove deprecated 2023-11-14T02:17:53,571 calls to avoid build errors in the future. 2023-11-14T02:17:53,571 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-11-14T02:17:53,572 ******************************************************************************** 2023-11-14T02:17:53,573 !! 2023-11-14T02:17:53,574 opt = self.warn_dash_deprecation(opt, section) 2023-11-14T02:17:53,601 running bdist_wheel 2023-11-14T02:17:53,728 running build 2023-11-14T02:17:53,729 running build_py 2023-11-14T02:17:53,758 creating build 2023-11-14T02:17:53,759 creating build/lib 2023-11-14T02:17:53,759 creating build/lib/pymlst 2023-11-14T02:17:53,761 copying pymlst/cmd.py -> build/lib/pymlst 2023-11-14T02:17:53,763 copying pymlst/config.py -> build/lib/pymlst 2023-11-14T02:17:53,765 copying pymlst/version.py -> build/lib/pymlst 2023-11-14T02:17:53,766 copying pymlst/__init__.py -> build/lib/pymlst 2023-11-14T02:17:53,768 creating build/lib/pymlst/cla 2023-11-14T02:17:53,769 copying pymlst/cla/model.py -> build/lib/pymlst/cla 2023-11-14T02:17:53,771 copying pymlst/cla/core.py -> build/lib/pymlst/cla 2023-11-14T02:17:53,774 copying pymlst/cla/__init__.py -> build/lib/pymlst/cla 2023-11-14T02:17:53,776 creating build/lib/pymlst/common 2023-11-14T02:17:53,777 copying pymlst/common/utils.py -> build/lib/pymlst/common 2023-11-14T02:17:53,779 copying pymlst/common/flag.py -> build/lib/pymlst/common 2023-11-14T02:17:53,781 copying pymlst/common/blat.py -> build/lib/pymlst/common 2023-11-14T02:17:53,783 copying pymlst/common/mafft.py -> build/lib/pymlst/common 2023-11-14T02:17:53,784 copying pymlst/common/__init__.py -> build/lib/pymlst/common 2023-11-14T02:17:53,786 copying pymlst/common/exceptions.py -> build/lib/pymlst/common 2023-11-14T02:17:53,787 copying pymlst/common/kma.py -> build/lib/pymlst/common 2023-11-14T02:17:53,790 copying pymlst/common/web.py -> build/lib/pymlst/common 2023-11-14T02:17:53,792 copying pymlst/common/psl.py -> build/lib/pymlst/common 2023-11-14T02:17:53,795 creating build/lib/pymlst/wg 2023-11-14T02:17:53,796 copying pymlst/wg/model.py -> build/lib/pymlst/wg 2023-11-14T02:17:53,798 copying pymlst/wg/extractors.py -> build/lib/pymlst/wg 2023-11-14T02:17:53,800 copying pymlst/wg/core.py -> build/lib/pymlst/wg 2023-11-14T02:17:53,803 copying pymlst/wg/__init__.py -> build/lib/pymlst/wg 2023-11-14T02:17:53,806 creating build/lib/pymlst/cla/commands 2023-11-14T02:17:53,807 copying pymlst/cla/commands/import.py -> build/lib/pymlst/cla/commands 2023-11-14T02:17:53,809 copying pymlst/cla/commands/search2.py -> build/lib/pymlst/cla/commands 2023-11-14T02:17:53,811 copying pymlst/cla/commands/search.py -> build/lib/pymlst/cla/commands 2023-11-14T02:17:53,812 copying pymlst/cla/commands/create.py -> build/lib/pymlst/cla/commands 2023-11-14T02:17:53,814 copying pymlst/cla/commands/__init__.py -> build/lib/pymlst/cla/commands 2023-11-14T02:17:53,815 copying pymlst/cla/commands/remove.py -> build/lib/pymlst/cla/commands 2023-11-14T02:17:53,818 creating build/lib/pymlst/common/commands 2023-11-14T02:17:53,818 copying pymlst/common/commands/configure.py -> build/lib/pymlst/common/commands 2023-11-14T02:17:53,820 copying pymlst/common/commands/__init__.py -> build/lib/pymlst/common/commands 2023-11-14T02:17:53,822 creating build/lib/pymlst/wg/commands 2023-11-14T02:17:53,823 copying pymlst/wg/commands/distance.py -> build/lib/pymlst/wg/commands 2023-11-14T02:17:53,825 copying pymlst/wg/commands/strain.py -> build/lib/pymlst/wg/commands 2023-11-14T02:17:53,827 copying pymlst/wg/commands/import.py -> build/lib/pymlst/wg/commands 2023-11-14T02:17:53,828 copying pymlst/wg/commands/subgraph.py -> build/lib/pymlst/wg/commands 2023-11-14T02:17:53,831 copying pymlst/wg/commands/gene.py -> build/lib/pymlst/wg/commands 2023-11-14T02:17:53,833 copying pymlst/wg/commands/recombination.py -> build/lib/pymlst/wg/commands 2023-11-14T02:17:53,835 copying pymlst/wg/commands/msa.py -> build/lib/pymlst/wg/commands 2023-11-14T02:17:53,837 copying pymlst/wg/commands/create.py -> build/lib/pymlst/wg/commands 2023-11-14T02:17:53,838 copying pymlst/wg/commands/mlst.py -> build/lib/pymlst/wg/commands 2023-11-14T02:17:53,840 copying pymlst/wg/commands/stats.py -> build/lib/pymlst/wg/commands 2023-11-14T02:17:53,842 copying pymlst/wg/commands/__init__.py -> build/lib/pymlst/wg/commands 2023-11-14T02:17:53,843 copying pymlst/wg/commands/sequence.py -> build/lib/pymlst/wg/commands 2023-11-14T02:17:53,845 copying pymlst/wg/commands/remove.py -> build/lib/pymlst/wg/commands 2023-11-14T02:17:53,846 copying pymlst/wg/commands/add2.py -> build/lib/pymlst/wg/commands 2023-11-14T02:17:53,848 copying pymlst/wg/commands/add.py -> build/lib/pymlst/wg/commands 2023-11-14T02:17:53,850 running egg_info 2023-11-14T02:17:53,876 writing PyMLST.egg-info/PKG-INFO 2023-11-14T02:17:53,880 writing dependency_links to PyMLST.egg-info/dependency_links.txt 2023-11-14T02:17:53,881 writing entry points to PyMLST.egg-info/entry_points.txt 2023-11-14T02:17:53,883 writing requirements to PyMLST.egg-info/requires.txt 2023-11-14T02:17:53,884 writing top-level names to PyMLST.egg-info/top_level.txt 2023-11-14T02:17:53,916 reading manifest file 'PyMLST.egg-info/SOURCES.txt' 2023-11-14T02:17:53,919 reading manifest template 'MANIFEST.in' 2023-11-14T02:17:53,921 adding license file 'LICENSE' 2023-11-14T02:17:53,925 writing manifest file 'PyMLST.egg-info/SOURCES.txt' 2023-11-14T02:17:53,927 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pymlst.data.alembic' is absent from the `packages` configuration. 2023-11-14T02:17:53,928 !! 2023-11-14T02:17:53,929 ******************************************************************************** 2023-11-14T02:17:53,930 ############################ 2023-11-14T02:17:53,930 # Package would be ignored # 2023-11-14T02:17:53,931 ############################ 2023-11-14T02:17:53,932 Python recognizes 'pymlst.data.alembic' as an importable package[^1], 2023-11-14T02:17:53,932 but it is absent from setuptools' `packages` configuration. 2023-11-14T02:17:53,933 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-14T02:17:53,934 package, please make sure that 'pymlst.data.alembic' is explicitly added 2023-11-14T02:17:53,934 to the `packages` configuration field. 2023-11-14T02:17:53,935 Alternatively, you can also rely on setuptools' discovery methods 2023-11-14T02:17:53,936 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-14T02:17:53,937 instead of `find_packages(...)`/`find:`). 2023-11-14T02:17:53,938 You can read more about "package discovery" on setuptools documentation page: 2023-11-14T02:17:53,939 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-14T02:17:53,940 If you don't want 'pymlst.data.alembic' to be distributed and are 2023-11-14T02:17:53,940 already explicitly excluding 'pymlst.data.alembic' via 2023-11-14T02:17:53,941 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-14T02:17:53,942 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-14T02:17:53,942 combination with a more fine grained `package-data` configuration. 2023-11-14T02:17:53,943 You can read more about "package data files" on setuptools documentation page: 2023-11-14T02:17:53,944 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-14T02:17:53,946 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-14T02:17:53,946 even if it does not contain any `.py` files. 2023-11-14T02:17:53,947 On the other hand, currently there is no concept of package data 2023-11-14T02:17:53,947 directory, all directories are treated like packages. 2023-11-14T02:17:53,948 ******************************************************************************** 2023-11-14T02:17:53,949 !! 2023-11-14T02:17:53,949 check.warn(importable) 2023-11-14T02:17:53,950 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pymlst.data.alembic.cla' is absent from the `packages` configuration. 2023-11-14T02:17:53,950 !! 2023-11-14T02:17:53,952 ******************************************************************************** 2023-11-14T02:17:53,952 ############################ 2023-11-14T02:17:53,953 # Package would be ignored # 2023-11-14T02:17:53,953 ############################ 2023-11-14T02:17:53,954 Python recognizes 'pymlst.data.alembic.cla' as an importable package[^1], 2023-11-14T02:17:53,955 but it is absent from setuptools' `packages` configuration. 2023-11-14T02:17:53,956 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-14T02:17:53,956 package, please make sure that 'pymlst.data.alembic.cla' is explicitly added 2023-11-14T02:17:53,957 to the `packages` configuration field. 2023-11-14T02:17:53,958 Alternatively, you can also rely on setuptools' discovery methods 2023-11-14T02:17:53,958 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-14T02:17:53,959 instead of `find_packages(...)`/`find:`). 2023-11-14T02:17:53,960 You can read more about "package discovery" on setuptools documentation page: 2023-11-14T02:17:53,961 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-14T02:17:53,962 If you don't want 'pymlst.data.alembic.cla' to be distributed and are 2023-11-14T02:17:53,963 already explicitly excluding 'pymlst.data.alembic.cla' via 2023-11-14T02:17:53,964 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-14T02:17:53,964 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-14T02:17:53,965 combination with a more fine grained `package-data` configuration. 2023-11-14T02:17:53,966 You can read more about "package data files" on setuptools documentation page: 2023-11-14T02:17:53,967 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-14T02:17:53,969 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-14T02:17:53,970 even if it does not contain any `.py` files. 2023-11-14T02:17:53,971 On the other hand, currently there is no concept of package data 2023-11-14T02:17:53,972 directory, all directories are treated like packages. 2023-11-14T02:17:53,972 ******************************************************************************** 2023-11-14T02:17:53,973 !! 2023-11-14T02:17:53,974 check.warn(importable) 2023-11-14T02:17:53,974 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pymlst.data.alembic.cla.versions' is absent from the `packages` configuration. 2023-11-14T02:17:53,975 !! 2023-11-14T02:17:53,976 ******************************************************************************** 2023-11-14T02:17:53,976 ############################ 2023-11-14T02:17:53,977 # Package would be ignored # 2023-11-14T02:17:53,977 ############################ 2023-11-14T02:17:53,978 Python recognizes 'pymlst.data.alembic.cla.versions' as an importable package[^1], 2023-11-14T02:17:53,978 but it is absent from setuptools' `packages` configuration. 2023-11-14T02:17:53,979 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-14T02:17:53,980 package, please make sure that 'pymlst.data.alembic.cla.versions' is explicitly added 2023-11-14T02:17:53,980 to the `packages` configuration field. 2023-11-14T02:17:53,981 Alternatively, you can also rely on setuptools' discovery methods 2023-11-14T02:17:53,982 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-14T02:17:53,983 instead of `find_packages(...)`/`find:`). 2023-11-14T02:17:53,984 You can read more about "package discovery" on setuptools documentation page: 2023-11-14T02:17:53,985 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-14T02:17:53,986 If you don't want 'pymlst.data.alembic.cla.versions' to be distributed and are 2023-11-14T02:17:53,987 already explicitly excluding 'pymlst.data.alembic.cla.versions' via 2023-11-14T02:17:53,987 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-14T02:17:53,988 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-14T02:17:53,988 combination with a more fine grained `package-data` configuration. 2023-11-14T02:17:53,990 You can read more about "package data files" on setuptools documentation page: 2023-11-14T02:17:53,991 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-14T02:17:53,993 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-14T02:17:53,993 even if it does not contain any `.py` files. 2023-11-14T02:17:53,994 On the other hand, currently there is no concept of package data 2023-11-14T02:17:53,994 directory, all directories are treated like packages. 2023-11-14T02:17:53,995 ******************************************************************************** 2023-11-14T02:17:53,996 !! 2023-11-14T02:17:53,997 check.warn(importable) 2023-11-14T02:17:53,997 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pymlst.data.alembic.wg' is absent from the `packages` configuration. 2023-11-14T02:17:53,998 !! 2023-11-14T02:17:53,999 ******************************************************************************** 2023-11-14T02:17:54,000 ############################ 2023-11-14T02:17:54,001 # Package would be ignored # 2023-11-14T02:17:54,001 ############################ 2023-11-14T02:17:54,002 Python recognizes 'pymlst.data.alembic.wg' as an importable package[^1], 2023-11-14T02:17:54,003 but it is absent from setuptools' `packages` configuration. 2023-11-14T02:17:54,004 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-14T02:17:54,005 package, please make sure that 'pymlst.data.alembic.wg' is explicitly added 2023-11-14T02:17:54,005 to the `packages` configuration field. 2023-11-14T02:17:54,006 Alternatively, you can also rely on setuptools' discovery methods 2023-11-14T02:17:54,007 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-14T02:17:54,007 instead of `find_packages(...)`/`find:`). 2023-11-14T02:17:54,008 You can read more about "package discovery" on setuptools documentation page: 2023-11-14T02:17:54,009 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-14T02:17:54,010 If you don't want 'pymlst.data.alembic.wg' to be distributed and are 2023-11-14T02:17:54,011 already explicitly excluding 'pymlst.data.alembic.wg' via 2023-11-14T02:17:54,011 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-14T02:17:54,012 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-14T02:17:54,013 combination with a more fine grained `package-data` configuration. 2023-11-14T02:17:54,013 You can read more about "package data files" on setuptools documentation page: 2023-11-14T02:17:54,014 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-14T02:17:54,016 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-14T02:17:54,017 even if it does not contain any `.py` files. 2023-11-14T02:17:54,017 On the other hand, currently there is no concept of package data 2023-11-14T02:17:54,018 directory, all directories are treated like packages. 2023-11-14T02:17:54,018 ******************************************************************************** 2023-11-14T02:17:54,019 !! 2023-11-14T02:17:54,020 check.warn(importable) 2023-11-14T02:17:54,020 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pymlst.data.alembic.wg.versions' is absent from the `packages` configuration. 2023-11-14T02:17:54,021 !! 2023-11-14T02:17:54,022 ******************************************************************************** 2023-11-14T02:17:54,023 ############################ 2023-11-14T02:17:54,023 # Package would be ignored # 2023-11-14T02:17:54,024 ############################ 2023-11-14T02:17:54,025 Python recognizes 'pymlst.data.alembic.wg.versions' as an importable package[^1], 2023-11-14T02:17:54,025 but it is absent from setuptools' `packages` configuration. 2023-11-14T02:17:54,027 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-14T02:17:54,027 package, please make sure that 'pymlst.data.alembic.wg.versions' is explicitly added 2023-11-14T02:17:54,028 to the `packages` configuration field. 2023-11-14T02:17:54,029 Alternatively, you can also rely on setuptools' discovery methods 2023-11-14T02:17:54,030 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-14T02:17:54,030 instead of `find_packages(...)`/`find:`). 2023-11-14T02:17:54,031 You can read more about "package discovery" on setuptools documentation page: 2023-11-14T02:17:54,033 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-14T02:17:54,034 If you don't want 'pymlst.data.alembic.wg.versions' to be distributed and are 2023-11-14T02:17:54,035 already explicitly excluding 'pymlst.data.alembic.wg.versions' via 2023-11-14T02:17:54,035 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-14T02:17:54,036 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-14T02:17:54,037 combination with a more fine grained `package-data` configuration. 2023-11-14T02:17:54,038 You can read more about "package data files" on setuptools documentation page: 2023-11-14T02:17:54,039 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-14T02:17:54,040 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-14T02:17:54,041 even if it does not contain any `.py` files. 2023-11-14T02:17:54,041 On the other hand, currently there is no concept of package data 2023-11-14T02:17:54,042 directory, all directories are treated like packages. 2023-11-14T02:17:54,042 ******************************************************************************** 2023-11-14T02:17:54,043 !! 2023-11-14T02:17:54,043 check.warn(importable) 2023-11-14T02:17:54,044 creating build/lib/pymlst/data 2023-11-14T02:17:54,044 creating build/lib/pymlst/data/alembic 2023-11-14T02:17:54,045 copying pymlst/data/alembic/alembic.ini -> build/lib/pymlst/data/alembic 2023-11-14T02:17:54,045 creating build/lib/pymlst/data/alembic/cla 2023-11-14T02:17:54,046 copying pymlst/data/alembic/cla/env.py -> build/lib/pymlst/data/alembic/cla 2023-11-14T02:17:54,046 copying pymlst/data/alembic/cla/script.py.mako -> build/lib/pymlst/data/alembic/cla 2023-11-14T02:17:54,047 creating build/lib/pymlst/data/alembic/cla/versions 2023-11-14T02:17:54,047 copying pymlst/data/alembic/cla/versions/21efe503d07d_initial.py -> build/lib/pymlst/data/alembic/cla/versions 2023-11-14T02:17:54,047 creating build/lib/pymlst/data/alembic/wg 2023-11-14T02:17:54,048 copying pymlst/data/alembic/wg/env.py -> build/lib/pymlst/data/alembic/wg 2023-11-14T02:17:54,048 copying pymlst/data/alembic/wg/script.py.mako -> build/lib/pymlst/data/alembic/wg 2023-11-14T02:17:54,049 creating build/lib/pymlst/data/alembic/wg/versions 2023-11-14T02:17:54,049 copying pymlst/data/alembic/wg/versions/52ae99cb5f33_initial.py -> build/lib/pymlst/data/alembic/wg/versions 2023-11-14T02:17:54,050 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-14T02:17:54,050 !! 2023-11-14T02:17:54,052 ******************************************************************************** 2023-11-14T02:17:54,052 Please avoid running ``setup.py`` directly. 2023-11-14T02:17:54,053 Instead, use pypa/build, pypa/installer or other 2023-11-14T02:17:54,053 standards-based tools. 2023-11-14T02:17:54,054 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-14T02:17:54,054 ******************************************************************************** 2023-11-14T02:17:54,056 !! 2023-11-14T02:17:54,056 self.initialize_options() 2023-11-14T02:17:54,057 installing to build/bdist.linux-armv7l/wheel 2023-11-14T02:17:54,057 running install 2023-11-14T02:17:54,059 running install_lib 2023-11-14T02:17:54,085 creating build/bdist.linux-armv7l 2023-11-14T02:17:54,086 creating build/bdist.linux-armv7l/wheel 2023-11-14T02:17:54,087 creating build/bdist.linux-armv7l/wheel/pymlst 2023-11-14T02:17:54,088 copying build/lib/pymlst/cmd.py -> build/bdist.linux-armv7l/wheel/pymlst 2023-11-14T02:17:54,091 creating build/bdist.linux-armv7l/wheel/pymlst/cla 2023-11-14T02:17:54,092 copying build/lib/pymlst/cla/model.py -> build/bdist.linux-armv7l/wheel/pymlst/cla 2023-11-14T02:17:54,094 copying build/lib/pymlst/cla/core.py -> build/bdist.linux-armv7l/wheel/pymlst/cla 2023-11-14T02:17:54,097 copying build/lib/pymlst/cla/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/cla 2023-11-14T02:17:54,100 creating build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2023-11-14T02:17:54,100 copying build/lib/pymlst/cla/commands/import.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2023-11-14T02:17:54,103 copying build/lib/pymlst/cla/commands/search2.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2023-11-14T02:17:54,104 copying build/lib/pymlst/cla/commands/search.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2023-11-14T02:17:54,106 copying build/lib/pymlst/cla/commands/create.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2023-11-14T02:17:54,108 copying build/lib/pymlst/cla/commands/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2023-11-14T02:17:54,109 copying build/lib/pymlst/cla/commands/remove.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2023-11-14T02:17:54,111 copying build/lib/pymlst/config.py -> build/bdist.linux-armv7l/wheel/pymlst 2023-11-14T02:17:54,113 copying build/lib/pymlst/version.py -> build/bdist.linux-armv7l/wheel/pymlst 2023-11-14T02:17:54,115 creating build/bdist.linux-armv7l/wheel/pymlst/common 2023-11-14T02:17:54,116 copying build/lib/pymlst/common/utils.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-11-14T02:17:54,118 copying build/lib/pymlst/common/flag.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-11-14T02:17:54,120 copying build/lib/pymlst/common/blat.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-11-14T02:17:54,122 copying build/lib/pymlst/common/mafft.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-11-14T02:17:54,124 copying build/lib/pymlst/common/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-11-14T02:17:54,126 creating build/bdist.linux-armv7l/wheel/pymlst/common/commands 2023-11-14T02:17:54,126 copying build/lib/pymlst/common/commands/configure.py -> build/bdist.linux-armv7l/wheel/pymlst/common/commands 2023-11-14T02:17:54,128 copying build/lib/pymlst/common/commands/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/common/commands 2023-11-14T02:17:54,130 copying build/lib/pymlst/common/exceptions.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-11-14T02:17:54,132 copying build/lib/pymlst/common/kma.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-11-14T02:17:54,134 copying build/lib/pymlst/common/web.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-11-14T02:17:54,137 copying build/lib/pymlst/common/psl.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-11-14T02:17:54,140 creating build/bdist.linux-armv7l/wheel/pymlst/data 2023-11-14T02:17:54,141 creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic 2023-11-14T02:17:54,142 copying build/lib/pymlst/data/alembic/alembic.ini -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic 2023-11-14T02:17:54,145 creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla 2023-11-14T02:17:54,146 copying build/lib/pymlst/data/alembic/cla/script.py.mako -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla 2023-11-14T02:17:54,148 creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla/versions 2023-11-14T02:17:54,149 copying build/lib/pymlst/data/alembic/cla/versions/21efe503d07d_initial.py -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla/versions 2023-11-14T02:17:54,151 copying build/lib/pymlst/data/alembic/cla/env.py -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla 2023-11-14T02:17:54,154 creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg 2023-11-14T02:17:54,155 copying build/lib/pymlst/data/alembic/wg/script.py.mako -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg 2023-11-14T02:17:54,157 creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg/versions 2023-11-14T02:17:54,159 copying build/lib/pymlst/data/alembic/wg/versions/52ae99cb5f33_initial.py -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg/versions 2023-11-14T02:17:54,160 copying build/lib/pymlst/data/alembic/wg/env.py -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg 2023-11-14T02:17:54,163 copying build/lib/pymlst/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst 2023-11-14T02:17:54,165 creating build/bdist.linux-armv7l/wheel/pymlst/wg 2023-11-14T02:17:54,166 copying build/lib/pymlst/wg/model.py -> build/bdist.linux-armv7l/wheel/pymlst/wg 2023-11-14T02:17:54,168 copying build/lib/pymlst/wg/extractors.py -> build/bdist.linux-armv7l/wheel/pymlst/wg 2023-11-14T02:17:54,171 copying build/lib/pymlst/wg/core.py -> build/bdist.linux-armv7l/wheel/pymlst/wg 2023-11-14T02:17:54,174 copying build/lib/pymlst/wg/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/wg 2023-11-14T02:17:54,176 creating build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-11-14T02:17:54,177 copying build/lib/pymlst/wg/commands/distance.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-11-14T02:17:54,179 copying build/lib/pymlst/wg/commands/strain.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-11-14T02:17:54,181 copying build/lib/pymlst/wg/commands/import.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-11-14T02:17:54,183 copying build/lib/pymlst/wg/commands/subgraph.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-11-14T02:17:54,185 copying build/lib/pymlst/wg/commands/gene.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-11-14T02:17:54,187 copying build/lib/pymlst/wg/commands/recombination.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-11-14T02:17:54,189 copying build/lib/pymlst/wg/commands/msa.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-11-14T02:17:54,190 copying build/lib/pymlst/wg/commands/create.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-11-14T02:17:54,192 copying build/lib/pymlst/wg/commands/mlst.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-11-14T02:17:54,194 copying build/lib/pymlst/wg/commands/stats.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-11-14T02:17:54,196 copying build/lib/pymlst/wg/commands/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-11-14T02:17:54,198 copying build/lib/pymlst/wg/commands/sequence.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-11-14T02:17:54,199 copying build/lib/pymlst/wg/commands/remove.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-11-14T02:17:54,202 copying build/lib/pymlst/wg/commands/add2.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-11-14T02:17:54,203 copying build/lib/pymlst/wg/commands/add.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-11-14T02:17:54,205 running install_egg_info 2023-11-14T02:17:54,233 Copying PyMLST.egg-info to build/bdist.linux-armv7l/wheel/PyMLST-2.1.5-py3.11.egg-info 2023-11-14T02:17:54,245 running install_scripts 2023-11-14T02:17:54,263 creating build/bdist.linux-armv7l/wheel/PyMLST-2.1.5.dist-info/WHEEL 2023-11-14T02:17:54,266 creating '/tmp/pip-wheel-cwa70475/PyMLST-2.1.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-14T02:17:54,269 adding 'pymlst/__init__.py' 2023-11-14T02:17:54,271 adding 'pymlst/cmd.py' 2023-11-14T02:17:54,272 adding 'pymlst/config.py' 2023-11-14T02:17:54,274 adding 'pymlst/version.py' 2023-11-14T02:17:54,275 adding 'pymlst/cla/__init__.py' 2023-11-14T02:17:54,279 adding 'pymlst/cla/core.py' 2023-11-14T02:17:54,280 adding 'pymlst/cla/model.py' 2023-11-14T02:17:54,282 adding 'pymlst/cla/commands/__init__.py' 2023-11-14T02:17:54,284 adding 'pymlst/cla/commands/create.py' 2023-11-14T02:17:54,285 adding 'pymlst/cla/commands/import.py' 2023-11-14T02:17:54,286 adding 'pymlst/cla/commands/remove.py' 2023-11-14T02:17:54,287 adding 'pymlst/cla/commands/search.py' 2023-11-14T02:17:54,289 adding 'pymlst/cla/commands/search2.py' 2023-11-14T02:17:54,291 adding 'pymlst/common/__init__.py' 2023-11-14T02:17:54,292 adding 'pymlst/common/blat.py' 2023-11-14T02:17:54,293 adding 'pymlst/common/exceptions.py' 2023-11-14T02:17:54,294 adding 'pymlst/common/flag.py' 2023-11-14T02:17:54,296 adding 'pymlst/common/kma.py' 2023-11-14T02:17:54,298 adding 'pymlst/common/mafft.py' 2023-11-14T02:17:54,299 adding 'pymlst/common/psl.py' 2023-11-14T02:17:54,301 adding 'pymlst/common/utils.py' 2023-11-14T02:17:54,302 adding 'pymlst/common/web.py' 2023-11-14T02:17:54,304 adding 'pymlst/common/commands/__init__.py' 2023-11-14T02:17:54,306 adding 'pymlst/common/commands/configure.py' 2023-11-14T02:17:54,308 adding 'pymlst/data/alembic/alembic.ini' 2023-11-14T02:17:54,310 adding 'pymlst/data/alembic/cla/env.py' 2023-11-14T02:17:54,311 adding 'pymlst/data/alembic/cla/script.py.mako' 2023-11-14T02:17:54,313 adding 'pymlst/data/alembic/cla/versions/21efe503d07d_initial.py' 2023-11-14T02:17:54,315 adding 'pymlst/data/alembic/wg/env.py' 2023-11-14T02:17:54,316 adding 'pymlst/data/alembic/wg/script.py.mako' 2023-11-14T02:17:54,318 adding 'pymlst/data/alembic/wg/versions/52ae99cb5f33_initial.py' 2023-11-14T02:17:54,319 adding 'pymlst/wg/__init__.py' 2023-11-14T02:17:54,324 adding 'pymlst/wg/core.py' 2023-11-14T02:17:54,326 adding 'pymlst/wg/extractors.py' 2023-11-14T02:17:54,327 adding 'pymlst/wg/model.py' 2023-11-14T02:17:54,329 adding 'pymlst/wg/commands/__init__.py' 2023-11-14T02:17:54,330 adding 'pymlst/wg/commands/add.py' 2023-11-14T02:17:54,331 adding 'pymlst/wg/commands/add2.py' 2023-11-14T02:17:54,332 adding 'pymlst/wg/commands/create.py' 2023-11-14T02:17:54,333 adding 'pymlst/wg/commands/distance.py' 2023-11-14T02:17:54,335 adding 'pymlst/wg/commands/gene.py' 2023-11-14T02:17:54,336 adding 'pymlst/wg/commands/import.py' 2023-11-14T02:17:54,337 adding 'pymlst/wg/commands/mlst.py' 2023-11-14T02:17:54,338 adding 'pymlst/wg/commands/msa.py' 2023-11-14T02:17:54,339 adding 'pymlst/wg/commands/recombination.py' 2023-11-14T02:17:54,341 adding 'pymlst/wg/commands/remove.py' 2023-11-14T02:17:54,342 adding 'pymlst/wg/commands/sequence.py' 2023-11-14T02:17:54,343 adding 'pymlst/wg/commands/stats.py' 2023-11-14T02:17:54,344 adding 'pymlst/wg/commands/strain.py' 2023-11-14T02:17:54,345 adding 'pymlst/wg/commands/subgraph.py' 2023-11-14T02:17:54,346 adding 'PyMLST-2.1.5.dist-info/LICENSE' 2023-11-14T02:17:54,348 adding 'PyMLST-2.1.5.dist-info/METADATA' 2023-11-14T02:17:54,349 adding 'PyMLST-2.1.5.dist-info/WHEEL' 2023-11-14T02:17:54,350 adding 'PyMLST-2.1.5.dist-info/entry_points.txt' 2023-11-14T02:17:54,350 adding 'PyMLST-2.1.5.dist-info/top_level.txt' 2023-11-14T02:17:54,352 adding 'PyMLST-2.1.5.dist-info/RECORD' 2023-11-14T02:17:54,354 removing build/bdist.linux-armv7l/wheel 2023-11-14T02:17:54,487 Building wheel for pymlst (setup.py): finished with status 'done' 2023-11-14T02:17:54,490 Created wheel for pymlst: filename=PyMLST-2.1.5-py3-none-any.whl size=54575 sha256=e38b9c1963b2c716d732ab1dc563d6f74b98e4ccef1a40ae039525256743bd7a 2023-11-14T02:17:54,492 Stored in directory: /tmp/pip-ephem-wheel-cache-fag3fpth/wheels/7e/9b/d8/6220279f962b4f30065afa7739fc0bf2e3e743e4fce1c0d60a 2023-11-14T02:17:54,504 Successfully built pymlst 2023-11-14T02:17:54,510 Removed build tracker: '/tmp/pip-build-tracker-qu3vylox'