2023-11-24T13:16:03,547 Created temporary directory: /tmp/pip-build-tracker-v_n413ea 2023-11-24T13:16:03,549 Initialized build tracking at /tmp/pip-build-tracker-v_n413ea 2023-11-24T13:16:03,549 Created build tracker: /tmp/pip-build-tracker-v_n413ea 2023-11-24T13:16:03,549 Entered build tracker: /tmp/pip-build-tracker-v_n413ea 2023-11-24T13:16:03,550 Created temporary directory: /tmp/pip-wheel-wleq_2xv 2023-11-24T13:16:03,554 Created temporary directory: /tmp/pip-ephem-wheel-cache-wg0gcwgh 2023-11-24T13:16:03,580 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-24T13:16:03,583 2 location(s) to search for versions of splam: 2023-11-24T13:16:03,583 * https://pypi.org/simple/splam/ 2023-11-24T13:16:03,583 * https://www.piwheels.org/simple/splam/ 2023-11-24T13:16:03,584 Fetching project page and analyzing links: https://pypi.org/simple/splam/ 2023-11-24T13:16:03,584 Getting page https://pypi.org/simple/splam/ 2023-11-24T13:16:03,586 Found index url https://pypi.org/simple/ 2023-11-24T13:16:03,637 Fetched page https://pypi.org/simple/splam/ as application/vnd.pypi.simple.v1+json 2023-11-24T13:16:03,647 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/57/2a/d68f86c46b3152c9072975cb1c8b3f2345e0f71cea763c0635ca8c5e0261/splam-0.2.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,648 Found link https://files.pythonhosted.org/packages/ba/e8/4cf0f802bf26fd6587829e3688109caef6d26e13d19ce003ac876212da15/splam-0.2.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.9 2023-11-24T13:16:03,648 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f0/97/c31f00ac8a786213c4a50dd993cd04e61af08766e9559f244fb9c3929178/splam-0.2.10-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,649 Found link https://files.pythonhosted.org/packages/72/d1/671663c98d0cfca3218b880633390493fcebf9972175a7c4d2752259f2ea/splam-0.2.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.10 2023-11-24T13:16:03,649 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/ad/36/84239a43f206dfbfe07c6e6f76ef8c54235439210640aeacc8cb20e24c2e/splam-0.2.11-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,650 Found link https://files.pythonhosted.org/packages/c7/b3/96a175c203358d735694d7d5fd9261ef8683af968e14e473e823d159cee1/splam-0.2.11.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.11 2023-11-24T13:16:03,650 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/a5/f5/e15307ccb65ec9c225b7f1af65ee2c8880ba8eb049d386f4c9da459b2e1e/splam-0.2.12-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,650 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ba/88/6cac004352d4aa92aabdfd31f9b96919f8044db486185d3fd3c924583bc8/splam-0.2.12-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,651 Found link https://files.pythonhosted.org/packages/32/fa/a9795e9df88e8ea6c6788ae171702d5f9d8ce2c3472408ab0784f08a7b91/splam-0.2.12.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.12 2023-11-24T13:16:03,651 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/59/88/fefee12f8e44d6879a0970d37b42fc4dc54010f78b1ee91f6db366c1f125/splam-0.2.13-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,651 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/64/13/d601e5e99b31891d95bc0a6201367dab38f12faaadcb6aedbee7725dca71/splam-0.2.13-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,652 Found link https://files.pythonhosted.org/packages/cf/fb/2e5425fcdb2e5fd7ff963b174b1582816154fd0373bbc96edf4e851d272d/splam-0.2.13.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.13 2023-11-24T13:16:03,652 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/da/65/a129eabb1d673da72f1d7dfd3495c01c89da78569b7f2dba2c746a0c0f29/splam-0.2.14-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,652 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/79/2fdaa68664126c8c71bac526b41e1e35e4195879170c8129a8d482f3ae7b/splam-0.2.14-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,653 Found link https://files.pythonhosted.org/packages/9b/3f/d7dd2411528494ed5062665c3b5d5d7d8422fd11fa181d5fc01ea67d7dbf/splam-0.2.14.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.14 2023-11-24T13:16:03,653 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f4/9a/e7d1f5f16d77888ac5d0935e180fa2210e875ff487909519d6871e1301da/splam-0.2.15-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,653 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/40/b6/eda61824794c736e52c09353dfbbd70eea4d0f0ab31896f3688d269ab64b/splam-0.2.15-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,654 Found link https://files.pythonhosted.org/packages/29/d0/5e9ef93e49636308cb56b70a06c8932321cb60a4aae678d8bb1d213b52b5/splam-0.2.15.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.15 2023-11-24T13:16:03,654 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e5/17/caa4b05a6370f2d197ec174fe1968f63acc357db5923efca0860b3a5e141/splam-0.2.16-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,654 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fe/a5/d90a02293e34acf5515a8f435ae90afeb823336d6232a7bedf01436a00f9/splam-0.2.17-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,654 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ef/af/7db5183d8c36a250bb4547c58610624b4d1067ea0eb119addc8986ce6ec1/splam-0.2.17-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,655 Found link https://files.pythonhosted.org/packages/26/3a/0e89dd56f9617853061d7c4ed6a220a414a01bba9f0005e54da52a1ad22e/splam-0.2.17.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.17 2023-11-24T13:16:03,655 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/bd/50/ae02dcd9e7c53df59acc9ad83ac389a886e55254cd6953614d43f0eaac60/splam-0.3.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,655 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/78/0b/8b0b45b16922007f88c9b81357cde8b84f9ea45327104b00724024e722ec/splam-0.3.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,656 Found link https://files.pythonhosted.org/packages/e5/c7/4bf13e849aefc7cfdd94f142e6267e4937c61d7fb9fbfe1119953f6a5e72/splam-0.3.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.3.0 2023-11-24T13:16:03,656 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/55/d8079e937d1f568ac9358237871b9d4d6d28abf1e8e8ec2b8073db7b166a/splam-0.3.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,656 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6d/9f/5e7c396bd04da9866f89f51574bd3fec1e691b279116e4d4de92b75b6538/splam-1.0.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,657 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/56/ae/c9e443ec09db88b2b2aaa18ebc6b12751b321d731ce21964ee188067bb0f/splam-1.0.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,657 Found link https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.0 2023-11-24T13:16:03,657 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/43/45/27c64605655d3127bf6155bc060f98fb565e631553e4f0e0a53d3922ebf3/splam-1.0.1-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,658 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/4d/0b5427df4d5d74ba5a98e28805b45fee4b15d2cad1e9aa91069306c29da7/splam-1.0.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,658 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/da/e1/11ee65eb50a2f628f92249d84cd72eddbc1386afbc82c7410fceb627d995/splam-1.0.1-py3.9-linux-x86_64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,658 Found link https://files.pythonhosted.org/packages/ad/3c/5a2fcc44ca9afa6bc1cb4fe6a30ba6495f9c1359c6b610536cb6c7998ca1/splam-1.0.1.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.1 2023-11-24T13:16:03,659 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6a/e7/e7827b0d637f018ef8d18ea969985ce37ffa520fd1bf6d0e8d43d72b749e/splam-1.0.2-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,659 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f2/ba/94da0985b6db88ba663b4e56a395d74d04283a79d0fdf476763251f5679f/splam-1.0.2-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,659 Found link https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.2 2023-11-24T13:16:03,660 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/30/c9/23c10c8ee217996cc58e6f16ffc732657d1cb3011f7cbc41ebb51927bbbb/splam-1.0.3-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,660 Found link https://files.pythonhosted.org/packages/b3/80/1ff08f5e516c2ce233a75e61e8ce3dacc34b00bd2cae4fae0d01b0d758e9/splam-1.0.3.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.3 2023-11-24T13:16:03,660 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/70/bd/3aacba5a589a5a8d4688781f1376a822b1df05526355738a85f10a6f0c86/splam-1.0.4-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,661 Found link https://files.pythonhosted.org/packages/b3/ef/1c49f24a396880a7ac6773041c067d1418ca533df5018de37f1fb49f512a/splam-1.0.4.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.4 2023-11-24T13:16:03,661 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/54/7e/ce14252ed5cbc26ad69ffe8ec6909d91f2bed9f97749fb5ba0f43a935479/splam-1.0.5-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,662 Found link https://files.pythonhosted.org/packages/5f/dd/ac054961585d4e5d71c889e8840dc096a847ac38b04295f38dbe524718e5/splam-1.0.5.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.5 2023-11-24T13:16:03,662 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f7/1e/02d35d67ba3f32f629f40824705e8ef82b6a80914fef3ffa59bcea67c965/splam-1.0.6-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,662 Found link https://files.pythonhosted.org/packages/b2/7d/e8f8b51f071b0bc4e2a1a0cc31db50c9acecb68271cd5bd5e113c7442fed/splam-1.0.6.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.6 2023-11-24T13:16:03,663 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/1d/57/3fbf056633d3332ab938f761553161346599e27c5f5c66f605c08b4fb2b3/splam-1.0.7-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,663 Found link https://files.pythonhosted.org/packages/a5/b6/ffa6c7c753ce7d9989d0e3adcb5310ecf29429dce73ffe51f2b63434c9fc/splam-1.0.7.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.7 2023-11-24T13:16:03,663 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/35/fa/76bf21536e4f60a1caae0132889ab74457d9c75a9476c3d0ec7b578870af/splam-1.0.8-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,664 Found link https://files.pythonhosted.org/packages/a5/ad/6d3495d79895726b6df06f3cd667006e5316fa3235e6919b841057f6e666/splam-1.0.8.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.8 2023-11-24T13:16:03,664 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fc/24/c13538db2c354993494537d33e4138e39d65e83f947f55d6f9d599e12a63/splam-1.0.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,665 Found link https://files.pythonhosted.org/packages/4d/2c/303bafdffb18df8357ea5c7f2bc00f9e4afd9667b9f10b411091c3adc293/splam-1.0.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.9 2023-11-24T13:16:03,665 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/eb/97/6d184eef2d7511274e92d1be778a573a0c3148510a51b031cb2cf646dd8c/splam-1.0.10-cp38-cp38-macosx_14_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,666 Found link https://files.pythonhosted.org/packages/53/d4/4f1f5ed4879f56c7a5ede7cd1f5a3bd555e963abb61c148a8ebb648e5098/splam-1.0.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.10 2023-11-24T13:16:03,666 Fetching project page and analyzing links: https://www.piwheels.org/simple/splam/ 2023-11-24T13:16:03,666 Getting page https://www.piwheels.org/simple/splam/ 2023-11-24T13:16:03,667 Found index url https://www.piwheels.org/simple/ 2023-11-24T13:16:03,737 Fetched page https://www.piwheels.org/simple/splam/ as text/html 2023-11-24T13:16:03,756 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.10-cp37-cp37m-linux_armv7l.whl#sha256=75566456c5f40f350f5745ef24039332f921563f0fa8b468db9d119abff56af7 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,756 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.10-cp37-cp37m-linux_armv6l.whl#sha256=75566456c5f40f350f5745ef24039332f921563f0fa8b468db9d119abff56af7 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,756 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.10-cp311-cp311-linux_armv7l.whl#sha256=f8fd14791d45e9f68a5167336d4dfc6230be3e3b3b4b1788d47b97c9545105ec (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,757 Skipping link: No binaries permitted for splam: 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https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv7l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,767 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv6l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,767 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv7l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,767 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv6l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,767 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv7l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,768 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv6l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,768 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv7l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,768 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv6l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,768 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv7l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,768 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv6l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,768 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv7l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,769 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv6l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-11-24T13:16:03,769 Skipping link: not a file: https://www.piwheels.org/simple/splam/ 2023-11-24T13:16:03,769 Skipping link: not a file: https://pypi.org/simple/splam/ 2023-11-24T13:16:03,789 Given no hashes to check 1 links for project 'splam': discarding no candidates 2023-11-24T13:16:03,806 Collecting splam==1.0.10 2023-11-24T13:16:03,808 Created temporary directory: /tmp/pip-unpack-np_jrrv2 2023-11-24T13:16:03,854 Downloading splam-1.0.10.tar.gz (41.4 MB) 2023-11-24T13:16:11,447 Added splam==1.0.10 from https://files.pythonhosted.org/packages/53/d4/4f1f5ed4879f56c7a5ede7cd1f5a3bd555e963abb61c148a8ebb648e5098/splam-1.0.10.tar.gz to build tracker '/tmp/pip-build-tracker-v_n413ea' 2023-11-24T13:16:11,449 Running setup.py (path:/tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/setup.py) egg_info for package splam 2023-11-24T13:16:11,450 Created temporary directory: /tmp/pip-pip-egg-info-xa8slagn 2023-11-24T13:16:11,450 Preparing metadata (setup.py): started 2023-11-24T13:16:11,451 Running command python setup.py egg_info 2023-11-24T13:16:12,533 running egg_info 2023-11-24T13:16:12,534 creating /tmp/pip-pip-egg-info-xa8slagn/splam.egg-info 2023-11-24T13:16:12,561 writing /tmp/pip-pip-egg-info-xa8slagn/splam.egg-info/PKG-INFO 2023-11-24T13:16:12,566 writing dependency_links to /tmp/pip-pip-egg-info-xa8slagn/splam.egg-info/dependency_links.txt 2023-11-24T13:16:12,567 writing entry points to /tmp/pip-pip-egg-info-xa8slagn/splam.egg-info/entry_points.txt 2023-11-24T13:16:12,569 writing requirements to /tmp/pip-pip-egg-info-xa8slagn/splam.egg-info/requires.txt 2023-11-24T13:16:12,570 writing top-level names to /tmp/pip-pip-egg-info-xa8slagn/splam.egg-info/top_level.txt 2023-11-24T13:16:12,572 writing manifest file '/tmp/pip-pip-egg-info-xa8slagn/splam.egg-info/SOURCES.txt' 2023-11-24T13:16:12,658 reading manifest file '/tmp/pip-pip-egg-info-xa8slagn/splam.egg-info/SOURCES.txt' 2023-11-24T13:16:12,659 reading manifest template 'MANIFEST.in' 2023-11-24T13:16:13,152 adding license file 'LICENSE' 2023-11-24T13:16:13,221 writing manifest file '/tmp/pip-pip-egg-info-xa8slagn/splam.egg-info/SOURCES.txt' 2023-11-24T13:16:13,316 Preparing metadata (setup.py): finished with status 'done' 2023-11-24T13:16:13,322 Source in /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c has version 1.0.10, which satisfies requirement splam==1.0.10 from https://files.pythonhosted.org/packages/53/d4/4f1f5ed4879f56c7a5ede7cd1f5a3bd555e963abb61c148a8ebb648e5098/splam-1.0.10.tar.gz 2023-11-24T13:16:13,322 Removed splam==1.0.10 from https://files.pythonhosted.org/packages/53/d4/4f1f5ed4879f56c7a5ede7cd1f5a3bd555e963abb61c148a8ebb648e5098/splam-1.0.10.tar.gz from build tracker '/tmp/pip-build-tracker-v_n413ea' 2023-11-24T13:16:13,329 Created temporary directory: /tmp/pip-unpack-68_sa42a 2023-11-24T13:16:13,330 Created temporary directory: /tmp/pip-unpack-3il479kh 2023-11-24T13:16:13,339 Building wheels for collected packages: splam 2023-11-24T13:16:13,343 Created temporary directory: /tmp/pip-wheel-0d7e0z_p 2023-11-24T13:16:13,343 Building wheel for splam (setup.py): started 2023-11-24T13:16:13,344 Destination directory: /tmp/pip-wheel-0d7e0z_p 2023-11-24T13:16:13,344 Running command python setup.py bdist_wheel 2023-11-24T13:16:14,369 running bdist_wheel 2023-11-24T13:16:14,480 running build 2023-11-24T13:16:14,480 running build_py 2023-11-24T13:16:14,509 creating build 2023-11-24T13:16:14,509 creating build/lib.linux-armv7l-cpython-39 2023-11-24T13:16:14,510 creating build/lib.linux-armv7l-cpython-39/splam 2023-11-24T13:16:14,511 copying splam/chr_size.py -> build/lib.linux-armv7l-cpython-39/splam 2023-11-24T13:16:14,514 copying splam/parse.py -> build/lib.linux-armv7l-cpython-39/splam 2023-11-24T13:16:14,516 copying splam/extract_gff.py -> build/lib.linux-armv7l-cpython-39/splam 2023-11-24T13:16:14,518 copying splam/__init__.py -> build/lib.linux-armv7l-cpython-39/splam 2023-11-24T13:16:14,519 copying splam/header.py -> build/lib.linux-armv7l-cpython-39/splam 2023-11-24T13:16:14,520 copying splam/clean_gff.py -> build/lib.linux-armv7l-cpython-39/splam 2023-11-24T13:16:14,522 copying splam/config.py -> build/lib.linux-armv7l-cpython-39/splam 2023-11-24T13:16:14,524 copying splam/prediction.py -> build/lib.linux-armv7l-cpython-39/splam 2023-11-24T13:16:14,526 copying splam/SPLAM.py -> build/lib.linux-armv7l-cpython-39/splam 2023-11-24T13:16:14,527 copying splam/main.py -> build/lib.linux-armv7l-cpython-39/splam 2023-11-24T13:16:14,530 running build_ext 2023-11-24T13:16:14,861 -- The C compiler identification is GNU 10.2.1 2023-11-24T13:16:15,177 -- The CXX compiler identification is GNU 10.2.1 2023-11-24T13:16:15,227 -- Detecting C compiler ABI info 2023-11-24T13:16:15,613 -- Detecting C compiler ABI info - done 2023-11-24T13:16:15,669 -- Check for working C compiler: /usr/bin/cc - skipped 2023-11-24T13:16:15,670 -- Detecting C compile features 2023-11-24T13:16:15,673 -- Detecting C compile features - done 2023-11-24T13:16:15,696 -- Detecting CXX compiler ABI info 2023-11-24T13:16:16,087 -- Detecting CXX compiler ABI info - done 2023-11-24T13:16:16,146 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-11-24T13:16:16,147 -- Detecting CXX compile features 2023-11-24T13:16:16,150 -- Detecting CXX compile features - done 2023-11-24T13:16:16,177 -- pybind11 v2.11.0 dev1 2023-11-24T13:16:16,239 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3.6") 2023-11-24T13:16:16,745 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so 2023-11-24T13:16:16,753 -- Performing Test HAS_FLTO 2023-11-24T13:16:17,326 -- Performing Test HAS_FLTO - Success 2023-11-24T13:16:17,367 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 2023-11-24T13:16:17,368 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/include/htslib 2023-11-24T13:16:17,368 LIBRARY_OUTPUT_DIRECTORY: 2023-11-24T13:16:17,502 EXAMPLE_VERSION_INFO: 1.0.10 2023-11-24T13:16:17,504 -- Configuring done 2023-11-24T13:16:17,582 -- Generating done 2023-11-24T13:16:17,593 -- Build files have been written to: /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/build/temp.linux-armv7l-cpython-39/splam_extract 2023-11-24T13:16:17,786 Scanning dependencies of target htslib 2023-11-24T13:16:17,833 [ 2%] Creating directories for 'htslib' 2023-11-24T13:16:18,158 [ 5%] No download step for 'htslib' 2023-11-24T13:16:18,269 [ 8%] No update step for 'htslib' 2023-11-24T13:16:18,380 [ 11%] No patch step for 'htslib' 2023-11-24T13:16:18,492 [ 14%] Performing configure step for 'htslib' 2023-11-24T13:16:24,732 checking for gcc... gcc 2023-11-24T13:16:24,995 checking whether the C compiler works... yes 2023-11-24T13:16:24,996 checking for C compiler default output file name... a.out 2023-11-24T13:16:25,157 checking for suffix of executables... 2023-11-24T13:16:25,330 checking whether we are cross compiling... no 2023-11-24T13:16:25,414 checking for suffix of object files... o 2023-11-24T13:16:25,489 checking whether we are using the GNU C compiler... yes 2023-11-24T13:16:25,569 checking whether gcc accepts -g... yes 2023-11-24T13:16:25,687 checking for gcc option to accept ISO C89... none needed 2023-11-24T13:16:25,689 checking for ranlib... ranlib 2023-11-24T13:16:25,697 checking for grep that handles long lines and -e... /usr/bin/grep 2023-11-24T13:16:25,775 checking for C compiler warning flags... -Wall 2023-11-24T13:16:25,881 checking how to run the C preprocessor... gcc -E 2023-11-24T13:16:25,987 checking for egrep... /usr/bin/grep -E 2023-11-24T13:16:26,422 checking for ANSI C header files... yes 2023-11-24T13:16:26,573 checking for sys/types.h... yes 2023-11-24T13:16:26,703 checking for sys/stat.h... yes 2023-11-24T13:16:26,834 checking for stdlib.h... yes 2023-11-24T13:16:26,969 checking for string.h... yes 2023-11-24T13:16:27,105 checking for memory.h... yes 2023-11-24T13:16:27,245 checking for strings.h... yes 2023-11-24T13:16:27,414 checking for inttypes.h... yes 2023-11-24T13:16:27,554 checking for stdint.h... yes 2023-11-24T13:16:27,702 checking for unistd.h... yes 2023-11-24T13:16:27,868 checking whether _XOPEN_SOURCE is declared... no 2023-11-24T13:16:28,032 checking C compiler flags needed for sse4.1... none 2023-11-24T13:16:28,229 checking C compiler flags needed for avx2... none 2023-11-24T13:16:28,396 checking C compiler flags needed for avx512f... none 2023-11-24T13:16:28,400 checking for pkg-config... /usr/bin/pkg-config 2023-11-24T13:16:28,427 checking pkg-config is at least version 0.9.0... yes 2023-11-24T13:16:28,429 checking for special C compiler options needed for large files... no 2023-11-24T13:16:28,602 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-11-24T13:16:28,616 checking shared library type for unknown-Linux... plain .so 2023-11-24T13:16:28,783 checking whether the linker supports versioned symbols... yes 2023-11-24T13:16:28,983 checking whether the compiler accepts -fvisibility=hidden... yes 2023-11-24T13:16:28,995 checking for stdlib.h... (cached) yes 2023-11-24T13:16:29,020 checking for unistd.h... (cached) yes 2023-11-24T13:16:29,178 checking for sys/param.h... yes 2023-11-24T13:16:29,368 checking for getpagesize... yes 2023-11-24T13:16:29,676 checking for working mmap... yes 2023-11-24T13:16:29,892 checking for gmtime_r... yes 2023-11-24T13:16:30,090 checking for fsync... yes 2023-11-24T13:16:30,288 checking for drand48... yes 2023-11-24T13:16:30,520 checking for srand48_deterministic... no 2023-11-24T13:16:30,735 checking whether fdatasync is declared... yes 2023-11-24T13:16:30,916 checking for fdatasync... yes 2023-11-24T13:16:31,306 checking for library containing log... -lm 2023-11-24T13:16:31,416 checking for zlib.h... yes 2023-11-24T13:16:31,619 checking for inflate in -lz... yes 2023-11-24T13:16:31,798 checking for library containing recv... none required 2023-11-24T13:16:31,885 checking for bzlib.h... yes 2023-11-24T13:16:32,065 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-11-24T13:16:32,077 checking whether htscodecs files are present... yes 2023-11-24T13:16:32,079 configure: WARNING: GCS support not enabled: requires libcurl support 2023-11-24T13:16:32,080 configure: WARNING: S3 support not enabled: requires libcurl support 2023-11-24T13:16:32,280 checking for library containing regcomp... none required 2023-11-24T13:16:32,352 configure: creating ./config.status 2023-11-24T13:16:32,656 config.status: creating config.mk 2023-11-24T13:16:32,699 config.status: creating htslib.pc.tmp 2023-11-24T13:16:32,745 config.status: creating config.h 2023-11-24T13:16:32,777 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-11-24T13:16:32,939 [ 17%] Performing build step for 'htslib' 2023-11-24T13:16:36,332 Updating htscodecs/htscodecs/version.h : #define HTSCODECS_VERSION_TEXT "1.5.2" 2023-11-24T13:17:30,978 [ 20%] No install step for 'htslib' 2023-11-24T13:17:31,095 [ 22%] Completed 'htslib' 2023-11-24T13:17:31,248 [ 22%] Built target htslib 2023-11-24T13:17:31,458 Scanning dependencies of target splam_clean 2023-11-24T13:17:31,541 [ 25%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-11-24T13:17:36,821 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-11-24T13:17:36,822 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,822 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-11-24T13:17:36,822 | ^~~~~~~~~~ 2023-11-24T13:17:36,822 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,822 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-11-24T13:17:36,823 | ^~~~~~ 2023-11-24T13:17:36,823 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,823 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-11-24T13:17:36,823 | ^~~~ 2023-11-24T13:17:36,823 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,824 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-11-24T13:17:36,824 | ^~~~ 2023-11-24T13:17:36,825 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,825 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-11-24T13:17:36,825 | ^~~~~~~~~~ 2023-11-24T13:17:36,825 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,826 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-11-24T13:17:36,826 | ^~~~~~ 2023-11-24T13:17:36,826 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,826 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-11-24T13:17:36,826 | ^~~~ 2023-11-24T13:17:36,827 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,827 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-11-24T13:17:36,827 | ^~~~ 2023-11-24T13:17:36,828 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,828 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-11-24T13:17:36,828 | ^~~~~~~~~~ 2023-11-24T13:17:36,828 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,829 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-11-24T13:17:36,829 | ^~~~~~~ 2023-11-24T13:17:36,829 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,829 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-11-24T13:17:36,829 | ^~~~ 2023-11-24T13:17:36,830 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,830 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-11-24T13:17:36,830 | ^~~~ 2023-11-24T13:17:36,830 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,830 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-11-24T13:17:36,830 | ^~~~ 2023-11-24T13:17:36,831 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,832 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-11-24T13:17:36,832 | ^~~~~~~~~~ 2023-11-24T13:17:36,832 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,832 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-11-24T13:17:36,832 | ^~~~~~~ 2023-11-24T13:17:36,833 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,833 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-11-24T13:17:36,833 | ^~~~ 2023-11-24T13:17:36,833 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,833 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-11-24T13:17:36,833 | ^~~~ 2023-11-24T13:17:36,834 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:17:36,834 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-11-24T13:17:36,834 | ^~~~ 2023-11-24T13:17:41,787 [ 28%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-11-24T13:17:49,788 [ 31%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-11-24T13:17:50,262 [ 34%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-11-24T13:17:50,760 [ 37%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-11-24T13:17:51,063 [ 40%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-11-24T13:17:52,844 [ 42%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-11-24T13:17:55,531 [ 45%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-11-24T13:17:59,480 [ 48%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-11-24T13:18:04,048 [ 51%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-11-24T13:18:08,192 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-11-24T13:18:12,265 [ 57%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-11-24T13:18:15,738 [ 60%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-11-24T13:18:17,912 [ 62%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-11-24T13:18:18,989 [ 65%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-11-24T13:18:19,795 [ 68%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-11-24T13:18:20,769 [ 71%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so 2023-11-24T13:18:41,674 [ 71%] Built target splam_clean 2023-11-24T13:18:41,827 Scanning dependencies of target splam_extract 2023-11-24T13:18:41,881 [ 74%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-11-24T13:18:51,965 [ 77%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-11-24T13:18:55,922 [ 80%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-11-24T13:18:58,590 [ 82%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-11-24T13:19:02,608 [ 85%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-11-24T13:19:06,089 [ 88%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-11-24T13:19:08,263 [ 91%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-11-24T13:19:09,365 [ 94%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-11-24T13:19:10,139 [ 97%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-11-24T13:19:11,084 [100%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so 2023-11-24T13:19:25,139 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-11-24T13:19:25,139 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/include/gclib/GVec.hh:107:14: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-11-24T13:19:25,139 107 | fArray=new OBJ[NewCapacity]; 2023-11-24T13:19:25,140 | ^ 2023-11-24T13:19:25,140 /usr/include/c++/10/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-11-24T13:19:25,140 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-11-24T13:19:25,140 | ^ 2023-11-24T13:19:33,396 [100%] Built target splam_extract 2023-11-24T13:19:33,763 -- The C compiler identification is GNU 10.2.1 2023-11-24T13:19:34,077 -- The CXX compiler identification is GNU 10.2.1 2023-11-24T13:19:34,122 -- Detecting C compiler ABI info 2023-11-24T13:19:34,495 -- Detecting C compiler ABI info - done 2023-11-24T13:19:34,551 -- Check for working C compiler: /usr/bin/cc - skipped 2023-11-24T13:19:34,553 -- Detecting C compile features 2023-11-24T13:19:34,555 -- Detecting C compile features - done 2023-11-24T13:19:34,578 -- Detecting CXX compiler ABI info 2023-11-24T13:19:34,966 -- Detecting CXX compiler ABI info - done 2023-11-24T13:19:35,025 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-11-24T13:19:35,026 -- Detecting CXX compile features 2023-11-24T13:19:35,029 -- Detecting CXX compile features - done 2023-11-24T13:19:35,054 -- pybind11 v2.11.0 dev1 2023-11-24T13:19:35,125 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3.6") 2023-11-24T13:19:35,648 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so 2023-11-24T13:19:35,657 -- Performing Test HAS_FLTO 2023-11-24T13:19:36,228 -- Performing Test HAS_FLTO - Success 2023-11-24T13:19:36,268 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 2023-11-24T13:19:36,270 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/include/htslib 2023-11-24T13:19:36,270 LIBRARY_OUTPUT_DIRECTORY: 2023-11-24T13:19:36,407 EXAMPLE_VERSION_INFO: 1.0.10 2023-11-24T13:19:36,409 -- Configuring done 2023-11-24T13:19:36,486 -- Generating done 2023-11-24T13:19:36,498 -- Build files have been written to: /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/build/temp.linux-armv7l-cpython-39/splam_clean 2023-11-24T13:19:36,715 Scanning dependencies of target htslib 2023-11-24T13:19:36,766 [ 2%] Creating directories for 'htslib' 2023-11-24T13:19:37,093 [ 5%] No download step for 'htslib' 2023-11-24T13:19:37,204 [ 8%] No update step for 'htslib' 2023-11-24T13:19:37,315 [ 11%] No patch step for 'htslib' 2023-11-24T13:19:37,426 [ 14%] Performing configure step for 'htslib' 2023-11-24T13:19:42,051 checking for gcc... gcc 2023-11-24T13:19:42,408 checking whether the C compiler works... yes 2023-11-24T13:19:42,410 checking for C compiler default output file name... a.out 2023-11-24T13:19:42,576 checking for suffix of executables... 2023-11-24T13:19:42,751 checking whether we are cross compiling... no 2023-11-24T13:19:42,837 checking for suffix of object files... o 2023-11-24T13:19:42,914 checking whether we are using the GNU C compiler... yes 2023-11-24T13:19:42,990 checking whether gcc accepts -g... yes 2023-11-24T13:19:43,107 checking for gcc option to accept ISO C89... none needed 2023-11-24T13:19:43,109 checking for ranlib... ranlib 2023-11-24T13:19:43,116 checking for grep that handles long lines and -e... /usr/bin/grep 2023-11-24T13:19:43,214 checking for C compiler warning flags... -Wall 2023-11-24T13:19:43,363 checking how to run the C preprocessor... gcc -E 2023-11-24T13:19:43,468 checking for egrep... /usr/bin/grep -E 2023-11-24T13:19:43,904 checking for ANSI C header files... yes 2023-11-24T13:19:44,027 checking for sys/types.h... yes 2023-11-24T13:19:44,196 checking for sys/stat.h... yes 2023-11-24T13:19:44,328 checking for stdlib.h... yes 2023-11-24T13:19:44,466 checking for string.h... yes 2023-11-24T13:19:44,607 checking for memory.h... yes 2023-11-24T13:19:44,748 checking for strings.h... yes 2023-11-24T13:19:44,905 checking for inttypes.h... yes 2023-11-24T13:19:45,094 checking for stdint.h... yes 2023-11-24T13:19:45,243 checking for unistd.h... yes 2023-11-24T13:19:45,410 checking whether _XOPEN_SOURCE is declared... no 2023-11-24T13:19:45,577 checking C compiler flags needed for sse4.1... none 2023-11-24T13:19:45,744 checking C compiler flags needed for avx2... none 2023-11-24T13:19:45,947 checking C compiler flags needed for avx512f... none 2023-11-24T13:19:45,951 checking for pkg-config... /usr/bin/pkg-config 2023-11-24T13:19:45,957 checking pkg-config is at least version 0.9.0... yes 2023-11-24T13:19:45,959 checking for special C compiler options needed for large files... no 2023-11-24T13:19:46,130 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-11-24T13:19:46,146 checking shared library type for unknown-Linux... plain .so 2023-11-24T13:19:46,312 checking whether the linker supports versioned symbols... yes 2023-11-24T13:19:46,477 checking whether the compiler accepts -fvisibility=hidden... yes 2023-11-24T13:19:46,491 checking for stdlib.h... (cached) yes 2023-11-24T13:19:46,514 checking for unistd.h... (cached) yes 2023-11-24T13:19:46,703 checking for sys/param.h... yes 2023-11-24T13:19:46,892 checking for getpagesize... yes 2023-11-24T13:19:47,196 checking for working mmap... yes 2023-11-24T13:19:47,384 checking for gmtime_r... yes 2023-11-24T13:19:47,620 checking for fsync... yes 2023-11-24T13:19:47,818 checking for drand48... yes 2023-11-24T13:19:48,035 checking for srand48_deterministic... no 2023-11-24T13:19:48,191 checking whether fdatasync is declared... yes 2023-11-24T13:19:48,399 checking for fdatasync... yes 2023-11-24T13:19:48,791 checking for library containing log... -lm 2023-11-24T13:19:48,890 checking for zlib.h... yes 2023-11-24T13:19:49,078 checking for inflate in -lz... yes 2023-11-24T13:19:49,272 checking for library containing recv... none required 2023-11-24T13:19:49,357 checking for bzlib.h... yes 2023-11-24T13:19:49,530 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-11-24T13:19:49,541 checking whether htscodecs files are present... yes 2023-11-24T13:19:49,543 configure: WARNING: GCS support not enabled: requires libcurl support 2023-11-24T13:19:49,544 configure: WARNING: S3 support not enabled: requires libcurl support 2023-11-24T13:19:49,724 checking for library containing regcomp... none required 2023-11-24T13:19:49,787 configure: creating ./config.status 2023-11-24T13:19:50,095 config.status: creating config.mk 2023-11-24T13:19:50,138 config.status: creating htslib.pc.tmp 2023-11-24T13:19:50,186 config.status: creating config.h 2023-11-24T13:19:50,205 config.status: config.h is unchanged 2023-11-24T13:19:50,210 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-11-24T13:19:50,375 [ 17%] Performing build step for 'htslib' 2023-11-24T13:19:50,815 [ 20%] No install step for 'htslib' 2023-11-24T13:19:50,932 [ 22%] Completed 'htslib' 2023-11-24T13:19:51,083 [ 22%] Built target htslib 2023-11-24T13:19:51,248 Scanning dependencies of target splam_clean 2023-11-24T13:19:51,301 [ 25%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-11-24T13:19:56,496 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-11-24T13:19:56,496 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,496 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-11-24T13:19:56,496 | ^~~~~~~~~~ 2023-11-24T13:19:56,496 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,497 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-11-24T13:19:56,497 | ^~~~~~ 2023-11-24T13:19:56,497 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,497 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-11-24T13:19:56,497 | ^~~~ 2023-11-24T13:19:56,498 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,498 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-11-24T13:19:56,498 | ^~~~ 2023-11-24T13:19:56,499 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,499 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-11-24T13:19:56,499 | ^~~~~~~~~~ 2023-11-24T13:19:56,500 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,500 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-11-24T13:19:56,500 | ^~~~~~ 2023-11-24T13:19:56,500 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,500 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-11-24T13:19:56,500 | ^~~~ 2023-11-24T13:19:56,501 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,501 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-11-24T13:19:56,501 | ^~~~ 2023-11-24T13:19:56,502 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,502 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-11-24T13:19:56,502 | ^~~~~~~~~~ 2023-11-24T13:19:56,503 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,503 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-11-24T13:19:56,503 | ^~~~~~~ 2023-11-24T13:19:56,503 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,503 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-11-24T13:19:56,503 | ^~~~ 2023-11-24T13:19:56,504 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,504 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-11-24T13:19:56,504 | ^~~~ 2023-11-24T13:19:56,504 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,504 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-11-24T13:19:56,504 | ^~~~ 2023-11-24T13:19:56,505 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,506 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-11-24T13:19:56,506 | ^~~~~~~~~~ 2023-11-24T13:19:56,506 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,506 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-11-24T13:19:56,506 | ^~~~~~~ 2023-11-24T13:19:56,507 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,507 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-11-24T13:19:56,507 | ^~~~ 2023-11-24T13:19:56,507 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,507 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-11-24T13:19:56,508 | ^~~~ 2023-11-24T13:19:56,508 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-11-24T13:19:56,508 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-11-24T13:19:56,508 | ^~~~ 2023-11-24T13:20:01,479 [ 28%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-11-24T13:20:09,444 [ 31%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-11-24T13:20:09,919 [ 34%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-11-24T13:20:10,416 [ 37%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-11-24T13:20:10,717 [ 40%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-11-24T13:20:12,537 [ 42%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-11-24T13:20:15,285 [ 45%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-11-24T13:20:19,445 [ 48%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-11-24T13:20:23,973 [ 51%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-11-24T13:20:28,101 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-11-24T13:20:32,106 [ 57%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-11-24T13:20:35,584 [ 60%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-11-24T13:20:37,761 [ 62%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-11-24T13:20:38,824 [ 65%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-11-24T13:20:39,601 [ 68%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-11-24T13:20:40,540 [ 71%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so 2023-11-24T13:21:01,381 [ 71%] Built target splam_clean 2023-11-24T13:21:01,522 Scanning dependencies of target splam_extract 2023-11-24T13:21:01,575 [ 74%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-11-24T13:21:11,681 [ 77%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-11-24T13:21:15,649 [ 80%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-11-24T13:21:18,328 [ 82%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-11-24T13:21:22,362 [ 85%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-11-24T13:21:25,857 [ 88%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-11-24T13:21:28,021 [ 91%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-11-24T13:21:29,088 [ 94%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-11-24T13:21:29,861 [ 97%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-11-24T13:21:30,799 [100%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so 2023-11-24T13:21:44,880 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-11-24T13:21:44,881 /tmp/pip-wheel-wleq_2xv/splam_4fba98efb73e4fc0aa11397bb30dbb7c/include/gclib/GVec.hh:107:14: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-11-24T13:21:44,881 107 | fArray=new OBJ[NewCapacity]; 2023-11-24T13:21:44,881 | ^ 2023-11-24T13:21:44,881 /usr/include/c++/10/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-11-24T13:21:44,882 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-11-24T13:21:44,882 | ^ 2023-11-24T13:21:53,119 [100%] Built target splam_extract 2023-11-24T13:21:53,213 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-24T13:21:53,213 !! 2023-11-24T13:21:53,213 ******************************************************************************** 2023-11-24T13:21:53,213 Please avoid running ``setup.py`` directly. 2023-11-24T13:21:53,214 Instead, use pypa/build, pypa/installer or other 2023-11-24T13:21:53,214 standards-based tools. 2023-11-24T13:21:53,214 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-24T13:21:53,214 ******************************************************************************** 2023-11-24T13:21:53,214 !! 2023-11-24T13:21:53,215 self.initialize_options() 2023-11-24T13:21:53,239 installing to build/bdist.linux-armv7l/wheel 2023-11-24T13:21:53,239 running install 2023-11-24T13:21:53,264 running install_lib 2023-11-24T13:21:53,290 creating build/bdist.linux-armv7l 2023-11-24T13:21:53,291 creating build/bdist.linux-armv7l/wheel 2023-11-24T13:21:53,292 copying build/lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-11-24T13:21:53,314 creating build/bdist.linux-armv7l/wheel/splam 2023-11-24T13:21:53,315 copying build/lib.linux-armv7l-cpython-39/splam/chr_size.py -> build/bdist.linux-armv7l/wheel/splam 2023-11-24T13:21:53,318 copying build/lib.linux-armv7l-cpython-39/splam/parse.py -> build/bdist.linux-armv7l/wheel/splam 2023-11-24T13:21:53,320 copying build/lib.linux-armv7l-cpython-39/splam/extract_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-11-24T13:21:53,322 copying build/lib.linux-armv7l-cpython-39/splam/__init__.py -> build/bdist.linux-armv7l/wheel/splam 2023-11-24T13:21:53,324 copying build/lib.linux-armv7l-cpython-39/splam/header.py -> build/bdist.linux-armv7l/wheel/splam 2023-11-24T13:21:53,326 copying build/lib.linux-armv7l-cpython-39/splam/clean_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-11-24T13:21:53,328 copying build/lib.linux-armv7l-cpython-39/splam/config.py -> build/bdist.linux-armv7l/wheel/splam 2023-11-24T13:21:53,330 copying build/lib.linux-armv7l-cpython-39/splam/prediction.py -> build/bdist.linux-armv7l/wheel/splam 2023-11-24T13:21:53,332 copying build/lib.linux-armv7l-cpython-39/splam/SPLAM.py -> build/bdist.linux-armv7l/wheel/splam 2023-11-24T13:21:53,334 copying build/lib.linux-armv7l-cpython-39/splam/main.py -> build/bdist.linux-armv7l/wheel/splam 2023-11-24T13:21:53,336 copying build/lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-11-24T13:21:53,358 running install_egg_info 2023-11-24T13:21:53,391 running egg_info 2023-11-24T13:21:53,416 writing splam.egg-info/PKG-INFO 2023-11-24T13:21:53,421 writing dependency_links to splam.egg-info/dependency_links.txt 2023-11-24T13:21:53,423 writing entry points to splam.egg-info/entry_points.txt 2023-11-24T13:21:53,425 writing requirements to splam.egg-info/requires.txt 2023-11-24T13:21:53,426 writing top-level names to splam.egg-info/top_level.txt 2023-11-24T13:21:53,457 reading manifest file 'splam.egg-info/SOURCES.txt' 2023-11-24T13:21:53,772 reading manifest template 'MANIFEST.in' 2023-11-24T13:21:54,267 adding license file 'LICENSE' 2023-11-24T13:21:54,373 writing manifest file 'splam.egg-info/SOURCES.txt' 2023-11-24T13:21:54,378 Copying splam.egg-info to build/bdist.linux-armv7l/wheel/splam-1.0.10-py3.9.egg-info 2023-11-24T13:21:54,393 running install_scripts 2023-11-24T13:21:54,447 creating build/bdist.linux-armv7l/wheel/splam-1.0.10.dist-info/WHEEL 2023-11-24T13:21:54,450 creating '/tmp/pip-wheel-0d7e0z_p/splam-1.0.10-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-24T13:21:54,751 adding 'splam_clean.cpython-39-arm-linux-gnueabihf.so' 2023-11-24T13:21:55,029 adding 'splam_extract.cpython-39-arm-linux-gnueabihf.so' 2023-11-24T13:21:55,038 adding 'splam/SPLAM.py' 2023-11-24T13:21:55,039 adding 'splam/__init__.py' 2023-11-24T13:21:55,045 adding 'splam/chr_size.py' 2023-11-24T13:21:55,047 adding 'splam/clean_gff.py' 2023-11-24T13:21:55,048 adding 'splam/config.py' 2023-11-24T13:21:55,049 adding 'splam/extract_gff.py' 2023-11-24T13:21:55,051 adding 'splam/header.py' 2023-11-24T13:21:55,052 adding 'splam/main.py' 2023-11-24T13:21:55,054 adding 'splam/parse.py' 2023-11-24T13:21:55,056 adding 'splam/prediction.py' 2023-11-24T13:21:55,058 adding 'splam-1.0.10.dist-info/LICENSE' 2023-11-24T13:21:55,060 adding 'splam-1.0.10.dist-info/METADATA' 2023-11-24T13:21:55,061 adding 'splam-1.0.10.dist-info/WHEEL' 2023-11-24T13:21:55,062 adding 'splam-1.0.10.dist-info/entry_points.txt' 2023-11-24T13:21:55,063 adding 'splam-1.0.10.dist-info/top_level.txt' 2023-11-24T13:21:55,064 adding 'splam-1.0.10.dist-info/RECORD' 2023-11-24T13:21:55,082 removing build/bdist.linux-armv7l/wheel 2023-11-24T13:21:55,189 Building wheel for splam (setup.py): finished with status 'done' 2023-11-24T13:21:55,202 Created wheel for splam: filename=splam-1.0.10-cp39-cp39-linux_armv7l.whl size=921072 sha256=6d3fb69c097b675f82d22c18b7e788b789d5622453b650bf701d61ca9cfa539a 2023-11-24T13:21:55,203 Stored in directory: /tmp/pip-ephem-wheel-cache-wg0gcwgh/wheels/29/50/51/ff9129faa7c3fc1fcdff9aa3498d404a3b6b2635d53a41ef9c 2023-11-24T13:21:55,216 Successfully built splam 2023-11-24T13:21:55,251 Removed build tracker: '/tmp/pip-build-tracker-v_n413ea'