2023-11-24T18:26:32,152 Created temporary directory: /tmp/pip-build-tracker-42ku49mg
2023-11-24T18:26:32,153 Initialized build tracking at /tmp/pip-build-tracker-42ku49mg
2023-11-24T18:26:32,153 Created build tracker: /tmp/pip-build-tracker-42ku49mg
2023-11-24T18:26:32,154 Entered build tracker: /tmp/pip-build-tracker-42ku49mg
2023-11-24T18:26:32,155 Created temporary directory: /tmp/pip-wheel-na_tdrrn
2023-11-24T18:26:32,158 Created temporary directory: /tmp/pip-ephem-wheel-cache-idbezxfi
2023-11-24T18:26:32,179 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-24T18:26:32,183 2 location(s) to search for versions of phlorest:
2023-11-24T18:26:32,183 * https://pypi.org/simple/phlorest/
2023-11-24T18:26:32,183 * https://www.piwheels.org/simple/phlorest/
2023-11-24T18:26:32,184 Fetching project page and analyzing links: https://pypi.org/simple/phlorest/
2023-11-24T18:26:32,184 Getting page https://pypi.org/simple/phlorest/
2023-11-24T18:26:32,186 Found index url https://pypi.org/simple/
2023-11-24T18:26:32,326 Fetched page https://pypi.org/simple/phlorest/ as application/vnd.pypi.simple.v1+json
2023-11-24T18:26:32,330   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/68/84/d55aef7f19f45bc7065d39a7d19d0c96367e220a127a7c4fcd66e8902a1c/phlorest-0.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.6)
2023-11-24T18:26:32,331   Found link https://files.pythonhosted.org/packages/18/a2/ff1bb5ba757092551a06ee02ed441819b48f37f9c72da78d0c9afccca7a2/phlorest-0.1.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.6), version: 0.1.0
2023-11-24T18:26:32,332   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/5e/4b/15a8fb4ffb221bc73c2e21c93062f51ac08c81b244ff18520bb0e87d7a2d/phlorest-0.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.7)
2023-11-24T18:26:32,333   Found link https://files.pythonhosted.org/packages/fb/68/748e320cc199984f8b1f969183d2898587c992319e4a06e9880c68a12386/phlorest-0.2.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.7), version: 0.2.0
2023-11-24T18:26:32,334   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/fe/08/065943bdc364468376ad2da0bf7736aefc3e79291f6dde47aa5958e8c2a1/phlorest-1.0.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T18:26:32,335   Found link https://files.pythonhosted.org/packages/f0/3d/19c73cfa040fe348519ad6d76257c41ceda631665d9d43d03cf481fc2442/phlorest-1.0.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.0.0
2023-11-24T18:26:32,336   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/fc/72/23541c7b8bd673681f2b2852006c6ec15530bab055f586af47347527f97d/phlorest-1.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T18:26:32,337   Found link https://files.pythonhosted.org/packages/38/6a/6e0e9a13d5947f97d8728b272c55c5d02130108f558cbd1b0cfea08d972c/phlorest-1.1.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.1.0
2023-11-24T18:26:32,337   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/5b/63/f978bb035c22a56f498995fbad6d994622f8d64b98e2b5b5b327a06fc675/phlorest-1.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T18:26:32,338   Found link https://files.pythonhosted.org/packages/47/4c/00fd1a08a6b39c1bf9d899a9c84e83741632c51c265686e6b13a160f6828/phlorest-1.2.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.2.0
2023-11-24T18:26:32,339   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/ac/a5/56d941f8be48b188f5c1197ac8023d8540f16712d746080d6e108c27c19a/phlorest-1.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T18:26:32,340   Found link https://files.pythonhosted.org/packages/90/40/9696525bb3dcc9b066ffd32a433ffdd620971abc8f46e983ab6f10bbf849/phlorest-1.3.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.3.0
2023-11-24T18:26:32,341   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/76/1a/c986721900c569f826a17727b47932590c6d454da7ecb1d9276bab1fbc20/phlorest-1.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T18:26:32,342   Found link https://files.pythonhosted.org/packages/c1/0c/06f13b182c76bfbd21ac6c852e77455268e9bb37cb58aac5502b54adafa5/phlorest-1.4.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.4.0
2023-11-24T18:26:32,342   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/78/b3/24ed02f1944a1981c1c6ec4bb1a0a6e045b9763d57a5f158810872e7c750/phlorest-1.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T18:26:32,343   Found link https://files.pythonhosted.org/packages/8c/7c/b74a46d990310c87b173026fe280ab0c24b52a7b5abc07f731b90c213158/phlorest-1.5.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.5.0
2023-11-24T18:26:32,344   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/d3/14/3cd8d1fa8bd6b30db78425c0cc9790304a482d1bd25ffb395700c38d2c95/phlorest-1.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T18:26:32,344   Found link https://files.pythonhosted.org/packages/07/4b/fc089d106829d93c369a94059ca73cd9ae62d1723b924ed7d54b97564f84/phlorest-1.6.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.6.0
2023-11-24T18:26:32,345   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/3e/78/aba0987e304e095ada6044ac2c808d1ae5fbff197b4d2f7a733584bf79a5/phlorest-1.6.1-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T18:26:32,346   Found link https://files.pythonhosted.org/packages/36/9c/00f599906accc282099a23060173e5e8e4a877a8d434d4d25c943b1cbe25/phlorest-1.6.1.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.6.1
2023-11-24T18:26:32,347 Fetching project page and analyzing links: https://www.piwheels.org/simple/phlorest/
2023-11-24T18:26:32,347 Getting page https://www.piwheels.org/simple/phlorest/
2023-11-24T18:26:32,349 Found index url https://www.piwheels.org/simple/
2023-11-24T18:26:32,509 Fetched page https://www.piwheels.org/simple/phlorest/ as text/html
2023-11-24T18:26:32,513   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.6.0-py2.py3-none-any.whl#sha256=7c21c06c0dece1f697118ecbffd3df5d02ef1f2f01aee37ed361b751cb8723c5 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T18:26:32,514   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.5.0-py2.py3-none-any.whl#sha256=55c9c10fe457da1de608280bba6b795b6ee128932b6f573f8d1948fcb234e417 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T18:26:32,515   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.4.0-py2.py3-none-any.whl#sha256=144838360ea2605b99f827781cf8db89c81b98172be2a9a3bcbb226c77c4b714 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T18:26:32,515   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.3.0-py2.py3-none-any.whl#sha256=3a0aff67000b0aa61e6e581b580ed356e0859dccd4f984e381b170a4d662a856 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T18:26:32,516   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.2.0-py2.py3-none-any.whl#sha256=d90b3427438a2114114bcbb52c2574309b22b042b1969b1d8cd4640335b6d27f (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T18:26:32,516   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.1.0-py2.py3-none-any.whl#sha256=b0b9765b5a32ff4959d3b0f3216ab838f5b3cde0e4e13b1e66e1518797dd4fe6 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T18:26:32,517   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.0.0-py2.py3-none-any.whl#sha256=f38de7963cec843e957835cb6240fbdb10a4c82f5dc8fa3291a7043157b69878 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T18:26:32,518   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-0.2.0-py2.py3-none-any.whl#sha256=c70cac5b0516907ee4e85bb706ae6b037b80eb40cb562277da6966a09f63d958 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.7)
2023-11-24T18:26:32,518   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-0.1.0-py2.py3-none-any.whl#sha256=be41f2262ab933e60fd603edb07bfc90c7d1b494aedaf3ab0ce28478fd62770d (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.6)
2023-11-24T18:26:32,519 Skipping link: not a file: https://www.piwheels.org/simple/phlorest/
2023-11-24T18:26:32,519 Skipping link: not a file: https://pypi.org/simple/phlorest/
2023-11-24T18:26:32,540 Given no hashes to check 1 links for project 'phlorest': discarding no candidates
2023-11-24T18:26:32,559 Collecting phlorest==1.6.1
2023-11-24T18:26:32,561   Created temporary directory: /tmp/pip-unpack-89rwezi1
2023-11-24T18:26:32,698   Downloading phlorest-1.6.1.tar.gz (27 kB)
2023-11-24T18:26:32,790   Added phlorest==1.6.1 from https://files.pythonhosted.org/packages/36/9c/00f599906accc282099a23060173e5e8e4a877a8d434d4d25c943b1cbe25/phlorest-1.6.1.tar.gz to build tracker '/tmp/pip-build-tracker-42ku49mg'
2023-11-24T18:26:32,793   Created temporary directory: /tmp/pip-build-env-wewy9w_i
2023-11-24T18:26:32,797   Installing build dependencies: started
2023-11-24T18:26:32,798   Running command pip subprocess to install build dependencies
2023-11-24T18:26:33,939   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-11-24T18:26:34,438   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-24T18:26:36,015   Collecting setuptools
2023-11-24T18:26:36,016     Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/e1/ed2dd0850446b8697ad28d118df885ad04140c64ace06c4bd559f7c8a94f/setuptools-69.0.2-py3-none-any.whl.metadata
2023-11-24T18:26:36,024     Using cached setuptools-69.0.2-py3-none-any.whl.metadata (6.3 kB)
2023-11-24T18:26:36,206   Using cached setuptools-69.0.2-py3-none-any.whl (819 kB)
2023-11-24T18:26:38,639   Installing collected packages: setuptools
2023-11-24T18:26:40,922   Successfully installed setuptools-69.0.2

2023-11-24T18:26:41,206   [notice] A new release of pip is available: 23.2.1 -> 23.3.1
2023-11-24T18:26:41,206   [notice] To update, run: python3 -m pip install --upgrade pip
2023-11-24T18:26:41,490   Installing build dependencies: finished with status 'done'
2023-11-24T18:26:41,493   Getting requirements to build wheel: started
2023-11-24T18:26:41,494   Running command Getting requirements to build wheel
2023-11-24T18:26:42,178   running egg_info
2023-11-24T18:26:42,181   writing src/phlorest.egg-info/PKG-INFO
2023-11-24T18:26:42,188   writing dependency_links to src/phlorest.egg-info/dependency_links.txt
2023-11-24T18:26:42,190   writing entry points to src/phlorest.egg-info/entry_points.txt
2023-11-24T18:26:42,194   writing requirements to src/phlorest.egg-info/requires.txt
2023-11-24T18:26:42,195   writing top-level names to src/phlorest.egg-info/top_level.txt
2023-11-24T18:26:42,215   reading manifest file 'src/phlorest.egg-info/SOURCES.txt'
2023-11-24T18:26:42,218   reading manifest template 'MANIFEST.in'
2023-11-24T18:26:42,223   warning: no previously-included files matching '*.py[co]' found anywhere in distribution
2023-11-24T18:26:42,224   adding license file 'LICENSE'
2023-11-24T18:26:42,227   writing manifest file 'src/phlorest.egg-info/SOURCES.txt'
2023-11-24T18:26:42,304   Getting requirements to build wheel: finished with status 'done'
2023-11-24T18:26:42,312   Installing backend dependencies: started
2023-11-24T18:26:42,313   Running command pip subprocess to install backend dependencies
2023-11-24T18:26:43,557   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-11-24T18:26:44,092   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-24T18:26:44,610   Collecting wheel
2023-11-24T18:26:44,628     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.3-py3-none-any.whl (65 kB)
2023-11-24T18:26:46,825   Installing collected packages: wheel
2023-11-24T18:26:47,053     Creating /tmp/pip-build-env-wewy9w_i/normal/local/bin
2023-11-24T18:26:47,056     changing mode of /tmp/pip-build-env-wewy9w_i/normal/local/bin/wheel to 755
2023-11-24T18:26:47,068   Successfully installed wheel-0.41.3

2023-11-24T18:26:47,337   [notice] A new release of pip is available: 23.2.1 -> 23.3.1
2023-11-24T18:26:47,337   [notice] To update, run: python3 -m pip install --upgrade pip
2023-11-24T18:26:47,566   Installing backend dependencies: finished with status 'done'
2023-11-24T18:26:47,568   Created temporary directory: /tmp/pip-modern-metadata-wc7ewl7x
2023-11-24T18:26:47,570   Preparing metadata (pyproject.toml): started
2023-11-24T18:26:47,571   Running command Preparing metadata (pyproject.toml)
2023-11-24T18:26:48,179   running dist_info
2023-11-24T18:26:48,204   creating /tmp/pip-modern-metadata-wc7ewl7x/phlorest.egg-info
2023-11-24T18:26:48,208   writing /tmp/pip-modern-metadata-wc7ewl7x/phlorest.egg-info/PKG-INFO
2023-11-24T18:26:48,218   writing dependency_links to /tmp/pip-modern-metadata-wc7ewl7x/phlorest.egg-info/dependency_links.txt
2023-11-24T18:26:48,220   writing entry points to /tmp/pip-modern-metadata-wc7ewl7x/phlorest.egg-info/entry_points.txt
2023-11-24T18:26:48,224   writing requirements to /tmp/pip-modern-metadata-wc7ewl7x/phlorest.egg-info/requires.txt
2023-11-24T18:26:48,225   writing top-level names to /tmp/pip-modern-metadata-wc7ewl7x/phlorest.egg-info/top_level.txt
2023-11-24T18:26:48,226   writing manifest file '/tmp/pip-modern-metadata-wc7ewl7x/phlorest.egg-info/SOURCES.txt'
2023-11-24T18:26:48,249   reading manifest file '/tmp/pip-modern-metadata-wc7ewl7x/phlorest.egg-info/SOURCES.txt'
2023-11-24T18:26:48,251   reading manifest template 'MANIFEST.in'
2023-11-24T18:26:48,258   warning: no previously-included files matching '*.py[co]' found anywhere in distribution
2023-11-24T18:26:48,258   adding license file 'LICENSE'
2023-11-24T18:26:48,261   writing manifest file '/tmp/pip-modern-metadata-wc7ewl7x/phlorest.egg-info/SOURCES.txt'
2023-11-24T18:26:48,262   creating '/tmp/pip-modern-metadata-wc7ewl7x/phlorest-1.6.1.dist-info'
2023-11-24T18:26:48,455   Preparing metadata (pyproject.toml): finished with status 'done'
2023-11-24T18:26:48,460   Source in /tmp/pip-wheel-na_tdrrn/phlorest_2046ad14445240debfa28f5bd8344b26 has version 1.6.1, which satisfies requirement phlorest==1.6.1 from https://files.pythonhosted.org/packages/36/9c/00f599906accc282099a23060173e5e8e4a877a8d434d4d25c943b1cbe25/phlorest-1.6.1.tar.gz
2023-11-24T18:26:48,461   Removed phlorest==1.6.1 from https://files.pythonhosted.org/packages/36/9c/00f599906accc282099a23060173e5e8e4a877a8d434d4d25c943b1cbe25/phlorest-1.6.1.tar.gz from build tracker '/tmp/pip-build-tracker-42ku49mg'
2023-11-24T18:26:48,466 Created temporary directory: /tmp/pip-unpack-ey1rrraw
2023-11-24T18:26:48,467 Created temporary directory: /tmp/pip-unpack-tb0t0o9g
2023-11-24T18:26:48,511 Building wheels for collected packages: phlorest
2023-11-24T18:26:48,515   Created temporary directory: /tmp/pip-wheel-p_gamb_j
2023-11-24T18:26:48,516   Destination directory: /tmp/pip-wheel-p_gamb_j
2023-11-24T18:26:48,518   Building wheel for phlorest (pyproject.toml): started
2023-11-24T18:26:48,519   Running command Building wheel for phlorest (pyproject.toml)
2023-11-24T18:26:49,123   running bdist_wheel
2023-11-24T18:26:49,163   running build
2023-11-24T18:26:49,164   running build_py
2023-11-24T18:26:49,171   creating build
2023-11-24T18:26:49,171   creating build/lib
2023-11-24T18:26:49,172   creating build/lib/phlorest
2023-11-24T18:26:49,173   copying src/phlorest/__init__.py -> build/lib/phlorest
2023-11-24T18:26:49,175   copying src/phlorest/nexuslib.py -> build/lib/phlorest
2023-11-24T18:26:49,177   copying src/phlorest/scaffold.py -> build/lib/phlorest
2023-11-24T18:26:49,178   copying src/phlorest/beast.py -> build/lib/phlorest
2023-11-24T18:26:49,180   copying src/phlorest/metadata.py -> build/lib/phlorest
2023-11-24T18:26:49,182   copying src/phlorest/dataset.py -> build/lib/phlorest
2023-11-24T18:26:49,184   copying src/phlorest/check.py -> build/lib/phlorest
2023-11-24T18:26:49,185   copying src/phlorest/__main__.py -> build/lib/phlorest
2023-11-24T18:26:49,187   copying src/phlorest/cldfwriter.py -> build/lib/phlorest
2023-11-24T18:26:49,190   creating build/lib/phlorest/commands
2023-11-24T18:26:49,190   copying src/phlorest/commands/__init__.py -> build/lib/phlorest/commands
2023-11-24T18:26:49,192   copying src/phlorest/commands/merge_characters.py -> build/lib/phlorest/commands
2023-11-24T18:26:49,194   copying src/phlorest/commands/contrib.py -> build/lib/phlorest/commands
2023-11-24T18:26:49,195   copying src/phlorest/commands/check.py -> build/lib/phlorest/commands
2023-11-24T18:26:49,197   copying src/phlorest/commands/release.py -> build/lib/phlorest/commands
2023-11-24T18:26:49,198   running egg_info
2023-11-24T18:26:49,202   writing src/phlorest.egg-info/PKG-INFO
2023-11-24T18:26:49,208   writing dependency_links to src/phlorest.egg-info/dependency_links.txt
2023-11-24T18:26:49,210   writing entry points to src/phlorest.egg-info/entry_points.txt
2023-11-24T18:26:49,213   writing requirements to src/phlorest.egg-info/requires.txt
2023-11-24T18:26:49,214   writing top-level names to src/phlorest.egg-info/top_level.txt
2023-11-24T18:26:49,224   reading manifest file 'src/phlorest.egg-info/SOURCES.txt'
2023-11-24T18:26:49,226   reading manifest template 'MANIFEST.in'
2023-11-24T18:26:49,230   warning: no previously-included files matching '*.py[co]' found anywhere in distribution
2023-11-24T18:26:49,231   adding license file 'LICENSE'
2023-11-24T18:26:49,234   writing manifest file 'src/phlorest.egg-info/SOURCES.txt'
2023-11-24T18:26:49,236   /tmp/pip-build-env-wewy9w_i/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'phlorest.phlorest_template' is absent from the `packages` configuration.
2023-11-24T18:26:49,237   !!

2023-11-24T18:26:49,238           ********************************************************************************
2023-11-24T18:26:49,238           ############################
2023-11-24T18:26:49,239           # Package would be ignored #
2023-11-24T18:26:49,240           ############################
2023-11-24T18:26:49,240           Python recognizes 'phlorest.phlorest_template' as an importable package[^1],
2023-11-24T18:26:49,241           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:26:49,242           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:26:49,242           package, please make sure that 'phlorest.phlorest_template' is explicitly added
2023-11-24T18:26:49,243           to the `packages` configuration field.

2023-11-24T18:26:49,244           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:26:49,244           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:26:49,245           instead of `find_packages(...)`/`find:`).

2023-11-24T18:26:49,246           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:26:49,247           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:26:49,248           If you don't want 'phlorest.phlorest_template' to be distributed and are
2023-11-24T18:26:49,249           already explicitly excluding 'phlorest.phlorest_template' via
2023-11-24T18:26:49,249           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:26:49,249           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:26:49,250           combination with a more fine grained `package-data` configuration.

2023-11-24T18:26:49,251           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:26:49,252           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:26:49,253           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:26:49,253                 even if it does not contain any `.py` files.
2023-11-24T18:26:49,254                 On the other hand, currently there is no concept of package data
2023-11-24T18:26:49,254                 directory, all directories are treated like packages.
2023-11-24T18:26:49,255           ********************************************************************************

2023-11-24T18:26:49,256   !!
2023-11-24T18:26:49,256     check.warn(importable)
2023-11-24T18:26:49,257   /tmp/pip-build-env-wewy9w_i/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'phlorest.phlorest_template.etc' is absent from the `packages` configuration.
2023-11-24T18:26:49,257   !!

2023-11-24T18:26:49,258           ********************************************************************************
2023-11-24T18:26:49,258           ############################
2023-11-24T18:26:49,259           # Package would be ignored #
2023-11-24T18:26:49,259           ############################
2023-11-24T18:26:49,260           Python recognizes 'phlorest.phlorest_template.etc' as an importable package[^1],
2023-11-24T18:26:49,260           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:26:49,261           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:26:49,262           package, please make sure that 'phlorest.phlorest_template.etc' is explicitly added
2023-11-24T18:26:49,262           to the `packages` configuration field.

2023-11-24T18:26:49,263           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:26:49,264           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:26:49,264           instead of `find_packages(...)`/`find:`).

2023-11-24T18:26:49,265           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:26:49,266           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:26:49,268           If you don't want 'phlorest.phlorest_template.etc' to be distributed and are
2023-11-24T18:26:49,268           already explicitly excluding 'phlorest.phlorest_template.etc' via
2023-11-24T18:26:49,269           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:26:49,269           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:26:49,270           combination with a more fine grained `package-data` configuration.

2023-11-24T18:26:49,271           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:26:49,272           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:26:49,274           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:26:49,274                 even if it does not contain any `.py` files.
2023-11-24T18:26:49,275                 On the other hand, currently there is no concept of package data
2023-11-24T18:26:49,281                 directory, all directories are treated like packages.
2023-11-24T18:26:49,282           ********************************************************************************

2023-11-24T18:26:49,283   !!
2023-11-24T18:26:49,284     check.warn(importable)
2023-11-24T18:26:49,284   copying src/phlorest/check.R -> build/lib/phlorest
2023-11-24T18:26:49,284   creating build/lib/phlorest/phlorest_template
2023-11-24T18:26:49,285   copying src/phlorest/phlorest_template/cldfbench_+id+.py_tmpl -> build/lib/phlorest/phlorest_template
2023-11-24T18:26:49,285   copying src/phlorest/phlorest_template/setup.cfg -> build/lib/phlorest/phlorest_template
2023-11-24T18:26:49,286   copying src/phlorest/phlorest_template/setup.py_tmpl -> build/lib/phlorest/phlorest_template
2023-11-24T18:26:49,286   copying src/phlorest/phlorest_template/test.py -> build/lib/phlorest/phlorest_template
2023-11-24T18:26:49,286   creating build/lib/phlorest/phlorest_template/.github
2023-11-24T18:26:49,287   creating build/lib/phlorest/phlorest_template/.github/workflows
2023-11-24T18:26:49,287   copying src/phlorest/phlorest_template/.github/workflows/cldf-validation.yml -> build/lib/phlorest/phlorest_template/.github/workflows
2023-11-24T18:26:49,288   creating build/lib/phlorest/phlorest_template/etc
2023-11-24T18:26:49,288   copying src/phlorest/phlorest_template/etc/characters.csv -> build/lib/phlorest/phlorest_template/etc
2023-11-24T18:26:49,288   copying src/phlorest/phlorest_template/etc/taxa.csv -> build/lib/phlorest/phlorest_template/etc
2023-11-24T18:26:49,289   installing to build/bdist.linux-armv7l/wheel
2023-11-24T18:26:49,289   running install
2023-11-24T18:26:49,302   running install_lib
2023-11-24T18:26:49,308   creating build/bdist.linux-armv7l
2023-11-24T18:26:49,309   creating build/bdist.linux-armv7l/wheel
2023-11-24T18:26:49,310   creating build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T18:26:49,311   copying build/lib/phlorest/__init__.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T18:26:49,313   copying build/lib/phlorest/nexuslib.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T18:26:49,315   copying build/lib/phlorest/scaffold.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T18:26:49,316   copying build/lib/phlorest/beast.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T18:26:49,318   copying build/lib/phlorest/metadata.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T18:26:49,320   creating build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T18:26:49,321   copying build/lib/phlorest/commands/__init__.py -> build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T18:26:49,323   copying build/lib/phlorest/commands/merge_characters.py -> build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T18:26:49,325   copying build/lib/phlorest/commands/contrib.py -> build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T18:26:49,327   copying build/lib/phlorest/commands/check.py -> build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T18:26:49,329   copying build/lib/phlorest/commands/release.py -> build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T18:26:49,331   copying build/lib/phlorest/dataset.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T18:26:49,333   copying build/lib/phlorest/check.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T18:26:49,335   copying build/lib/phlorest/__main__.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T18:26:49,337   copying build/lib/phlorest/cldfwriter.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T18:26:49,339   copying build/lib/phlorest/check.R -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T18:26:49,341   creating build/bdist.linux-armv7l/wheel/phlorest/phlorest_template
2023-11-24T18:26:49,342   copying build/lib/phlorest/phlorest_template/setup.py_tmpl -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template
2023-11-24T18:26:49,344   copying build/lib/phlorest/phlorest_template/setup.cfg -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template
2023-11-24T18:26:49,346   copying build/lib/phlorest/phlorest_template/cldfbench_+id+.py_tmpl -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template
2023-11-24T18:26:49,348   copying build/lib/phlorest/phlorest_template/test.py -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template
2023-11-24T18:26:49,350   creating build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/.github
2023-11-24T18:26:49,351   creating build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/.github/workflows
2023-11-24T18:26:49,352   copying build/lib/phlorest/phlorest_template/.github/workflows/cldf-validation.yml -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/.github/workflows
2023-11-24T18:26:49,354   creating build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/etc
2023-11-24T18:26:49,355   copying build/lib/phlorest/phlorest_template/etc/characters.csv -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/etc
2023-11-24T18:26:49,357   copying build/lib/phlorest/phlorest_template/etc/taxa.csv -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/etc
2023-11-24T18:26:49,358   running install_egg_info
2023-11-24T18:26:49,369   Copying src/phlorest.egg-info to build/bdist.linux-armv7l/wheel/phlorest-1.6.1-py3.11.egg-info
2023-11-24T18:26:49,382   running install_scripts
2023-11-24T18:26:49,402   creating build/bdist.linux-armv7l/wheel/phlorest-1.6.1.dist-info/WHEEL
2023-11-24T18:26:49,405   creating '/tmp/pip-wheel-p_gamb_j/.tmp-mlefysuf/phlorest-1.6.1-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-11-24T18:26:49,407   adding 'phlorest/__init__.py'
2023-11-24T18:26:49,408   adding 'phlorest/__main__.py'
2023-11-24T18:26:49,410   adding 'phlorest/beast.py'
2023-11-24T18:26:49,411   adding 'phlorest/check.R'
2023-11-24T18:26:49,413   adding 'phlorest/check.py'
2023-11-24T18:26:49,415   adding 'phlorest/cldfwriter.py'
2023-11-24T18:26:49,416   adding 'phlorest/dataset.py'
2023-11-24T18:26:49,418   adding 'phlorest/metadata.py'
2023-11-24T18:26:49,419   adding 'phlorest/nexuslib.py'
2023-11-24T18:26:49,421   adding 'phlorest/scaffold.py'
2023-11-24T18:26:49,422   adding 'phlorest/commands/__init__.py'
2023-11-24T18:26:49,423   adding 'phlorest/commands/check.py'
2023-11-24T18:26:49,425   adding 'phlorest/commands/contrib.py'
2023-11-24T18:26:49,426   adding 'phlorest/commands/merge_characters.py'
2023-11-24T18:26:49,427   adding 'phlorest/commands/release.py'
2023-11-24T18:26:49,429   adding 'phlorest/phlorest_template/cldfbench_+id+.py_tmpl'
2023-11-24T18:26:49,430   adding 'phlorest/phlorest_template/setup.cfg'
2023-11-24T18:26:49,431   adding 'phlorest/phlorest_template/setup.py_tmpl'
2023-11-24T18:26:49,433   adding 'phlorest/phlorest_template/test.py'
2023-11-24T18:26:49,435   adding 'phlorest/phlorest_template/.github/workflows/cldf-validation.yml'
2023-11-24T18:26:49,436   adding 'phlorest/phlorest_template/etc/characters.csv'
2023-11-24T18:26:49,437   adding 'phlorest/phlorest_template/etc/taxa.csv'
2023-11-24T18:26:49,440   adding 'phlorest-1.6.1.dist-info/LICENSE'
2023-11-24T18:26:49,442   adding 'phlorest-1.6.1.dist-info/METADATA'
2023-11-24T18:26:49,443   adding 'phlorest-1.6.1.dist-info/WHEEL'
2023-11-24T18:26:49,444   adding 'phlorest-1.6.1.dist-info/entry_points.txt'
2023-11-24T18:26:49,445   adding 'phlorest-1.6.1.dist-info/top_level.txt'
2023-11-24T18:26:49,446   adding 'phlorest-1.6.1.dist-info/RECORD'
2023-11-24T18:26:49,448   removing build/bdist.linux-armv7l/wheel
2023-11-24T18:26:49,546   Building wheel for phlorest (pyproject.toml): finished with status 'done'
2023-11-24T18:26:49,550   Created wheel for phlorest: filename=phlorest-1.6.1-py2.py3-none-any.whl size=28314 sha256=fff7041f59cd0205198999daf89d6c5d2066900a6122090097841a7c0e98dd62
2023-11-24T18:26:49,552   Stored in directory: /tmp/pip-ephem-wheel-cache-idbezxfi/wheels/48/26/7f/a14d9a8770dadcd220580717177cd051c9110d4ed045babdd2
2023-11-24T18:26:49,563 Successfully built phlorest
2023-11-24T18:26:49,567 Removed build tracker: '/tmp/pip-build-tracker-42ku49mg'