2024-01-27T01:40:45,729 Created temporary directory: /tmp/pip-build-tracker-0mc6e1dk 2024-01-27T01:40:45,730 Initialized build tracking at /tmp/pip-build-tracker-0mc6e1dk 2024-01-27T01:40:45,730 Created build tracker: /tmp/pip-build-tracker-0mc6e1dk 2024-01-27T01:40:45,731 Entered build tracker: /tmp/pip-build-tracker-0mc6e1dk 2024-01-27T01:40:45,732 Created temporary directory: /tmp/pip-wheel-w22h6cjo 2024-01-27T01:40:45,735 Created temporary directory: /tmp/pip-ephem-wheel-cache-_kmmv4h5 2024-01-27T01:40:45,757 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-27T01:40:45,760 2 location(s) to search for versions of fibsem: 2024-01-27T01:40:45,760 * https://pypi.org/simple/fibsem/ 2024-01-27T01:40:45,760 * https://www.piwheels.org/simple/fibsem/ 2024-01-27T01:40:45,761 Fetching project page and analyzing links: https://pypi.org/simple/fibsem/ 2024-01-27T01:40:45,762 Getting page https://pypi.org/simple/fibsem/ 2024-01-27T01:40:45,763 Found index url https://pypi.org/simple/ 2024-01-27T01:40:45,987 Fetched page https://pypi.org/simple/fibsem/ as application/vnd.pypi.simple.v1+json 2024-01-27T01:40:45,992 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/4c/cf/0ed2a796e278cf9de3d52e287cc7d8d9892c21c0a00920a9ff30f5033a56/fibsem-0.2.1a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-01-27T01:40:45,992 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ad/73/b8cf8db0dba6e191be400b025e534b4f6d7d18c39d86428101720ee58e4e/fibsem-0.2.1a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-01-27T01:40:45,993 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/d7/30/b93e42954d23659272a1b8ac6f3dd60da6eff0df55fc4d31bb515f6934eb/fibsem-0.2.2a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-01-27T01:40:45,994 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/c8/8f/4bfbe20bfa2ca615b74ad68a1317c1b61df9a93f5f8c9df9e223c9b20623/fibsem-0.2.2a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-01-27T01:40:45,994 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/7c/63/681df259de02d04424d8e71530649f0949504d5b31aaf5086651b5804d0c/fibsem-0.2.3a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-01-27T01:40:45,995 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/36/98/67400e49fe61d7e9e58d04099a516c039d4493a9ce346276a2cb37774dcd/fibsem-0.2.3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-01-27T01:40:45,996 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/39/cc/5b8579067af3dc74509ceaba38d5117cde72f44a85ca8bcc56f5ebee7260/fibsem-0.2.4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-01-27T01:40:45,996 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/43/13/625dba2d4741c02a3e6c970399a725b644b9a058dadb2f5fea9e9420b4e3/fibsem-0.2.5-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-01-27T01:40:45,997 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/87/1d/1562b356490f6c485f927c52d4b36e774bd5b9588d7a8da4a3dc9432db01/fibsem-0.3.0a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-01-27T01:40:45,998 Found link https://files.pythonhosted.org/packages/ad/3e/400c07e0574bbab09f711951db2f6ad3f367a8feff8f6cbafa7af89fd67a/fibsem-0.3.0a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0a0 2024-01-27T01:40:45,998 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/df/fb/4bad22a49352a49befdb7d1513163de5d8d1a4cfb0e60fa3ac4c67f20482/fibsem-0.3.0a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-01-27T01:40:45,999 Found link https://files.pythonhosted.org/packages/4e/58/d870caa49f7754b016226db2b7f0ec101164622fc2e82511e7bae7f95af6/fibsem-0.3.0a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0a1 2024-01-27T01:40:46,000 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/05/51/0a0cc14778c2ae7f68a601aa26821327fc35e08bc81546ba6e3d10bc704f/fibsem-0.3.0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-01-27T01:40:46,001 Found link https://files.pythonhosted.org/packages/fc/2b/fea39a412194d35634c6d7f2e0768021aa0f024b880a17251a3f377e1c5c/fibsem-0.3.0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0 2024-01-27T01:40:46,002 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/32/8b/d53be8a146bfa866e850b13e6b80977d4c1bc527852fc4d0c0cfe0b6fc56/fibsem-0.3.1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-01-27T01:40:46,003 Found link https://files.pythonhosted.org/packages/52/84/03322d031fa283e8c468f6e706d59b3efe59dbb4e2341ffa012c5f68c127/fibsem-0.3.1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.1 2024-01-27T01:40:46,003 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/07/65/22b4f873c57c647b123c552214de8f533f12706e6ff2b419f08b02c6f421/fibsem-0.3.2a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-01-27T01:40:46,004 Found link https://files.pythonhosted.org/packages/78/de/5da6cf780c6ae414322a1fd3ae2f80223b2ab197b5045886658688b67986/fibsem-0.3.2a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.2a1 2024-01-27T01:40:46,005 Fetching project page and analyzing links: https://www.piwheels.org/simple/fibsem/ 2024-01-27T01:40:46,005 Getting page https://www.piwheels.org/simple/fibsem/ 2024-01-27T01:40:46,007 Found index url https://www.piwheels.org/simple/ 2024-01-27T01:40:46,169 Fetched page https://www.piwheels.org/simple/fibsem/ as text/html 2024-01-27T01:40:46,171 Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.3.1-py3-none-any.whl#sha256=72ca906da40a31401ad7636438566ad77e6d6ef434c85d4517c7411645c41027 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2024-01-27T01:40:46,172 Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.3.0-py3-none-any.whl#sha256=61d366cbae13eecb465c904050eba503bb875f93c6e743eedcfae3ca9cf5e2ac (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2024-01-27T01:40:46,172 Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.3.0a1-py3-none-any.whl#sha256=21ae6ee6be3ad2f8832a6d457a20aea2627a25340a672d8a42f9f0488d8a710c (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2024-01-27T01:40:46,173 Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.3.0a0-py3-none-any.whl#sha256=4e29ec9054961edc9242d2cb332c01000bcb0574069ad23261e41ac7f1489a4f (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2024-01-27T01:40:46,174 Skipping link: not a file: https://www.piwheels.org/simple/fibsem/ 2024-01-27T01:40:46,174 Skipping link: not a file: https://pypi.org/simple/fibsem/ 2024-01-27T01:40:46,193 Given no hashes to check 1 links for project 'fibsem': discarding no candidates 2024-01-27T01:40:46,211 Collecting fibsem==0.3.2a1 2024-01-27T01:40:46,213 Created temporary directory: /tmp/pip-unpack-aocn_e96 2024-01-27T01:40:46,438 Downloading fibsem-0.3.2a1.tar.gz (8.4 MB) 2024-01-27T01:40:48,332 Added fibsem==0.3.2a1 from https://files.pythonhosted.org/packages/78/de/5da6cf780c6ae414322a1fd3ae2f80223b2ab197b5045886658688b67986/fibsem-0.3.2a1.tar.gz to build tracker '/tmp/pip-build-tracker-0mc6e1dk' 2024-01-27T01:40:48,334 Running setup.py (path:/tmp/pip-wheel-w22h6cjo/fibsem_2b74b0cdb99547c2a686cb2794cf4a5a/setup.py) egg_info for package fibsem 2024-01-27T01:40:48,335 Created temporary directory: /tmp/pip-pip-egg-info-uyv666_i 2024-01-27T01:40:48,336 Preparing metadata (setup.py): started 2024-01-27T01:40:48,337 Running command python setup.py egg_info 2024-01-27T01:40:49,397 running egg_info 2024-01-27T01:40:49,398 creating /tmp/pip-pip-egg-info-uyv666_i/fibsem.egg-info 2024-01-27T01:40:49,422 writing /tmp/pip-pip-egg-info-uyv666_i/fibsem.egg-info/PKG-INFO 2024-01-27T01:40:49,425 writing dependency_links to /tmp/pip-pip-egg-info-uyv666_i/fibsem.egg-info/dependency_links.txt 2024-01-27T01:40:49,427 writing entry points to /tmp/pip-pip-egg-info-uyv666_i/fibsem.egg-info/entry_points.txt 2024-01-27T01:40:49,429 writing requirements to /tmp/pip-pip-egg-info-uyv666_i/fibsem.egg-info/requires.txt 2024-01-27T01:40:49,430 writing top-level names to /tmp/pip-pip-egg-info-uyv666_i/fibsem.egg-info/top_level.txt 2024-01-27T01:40:49,432 writing manifest file '/tmp/pip-pip-egg-info-uyv666_i/fibsem.egg-info/SOURCES.txt' 2024-01-27T01:40:49,517 reading manifest file '/tmp/pip-pip-egg-info-uyv666_i/fibsem.egg-info/SOURCES.txt' 2024-01-27T01:40:49,518 reading manifest template 'MANIFEST.in' 2024-01-27T01:40:49,520 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-01-27T01:40:49,521 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-01-27T01:40:49,522 warning: no previously-included files matching '*.ui' found under directory '*' 2024-01-27T01:40:49,522 adding license file 'LICENSE' 2024-01-27T01:40:49,525 writing manifest file '/tmp/pip-pip-egg-info-uyv666_i/fibsem.egg-info/SOURCES.txt' 2024-01-27T01:40:49,633 Preparing metadata (setup.py): finished with status 'done' 2024-01-27T01:40:49,637 Source in /tmp/pip-wheel-w22h6cjo/fibsem_2b74b0cdb99547c2a686cb2794cf4a5a has version 0.3.2a1, which satisfies requirement fibsem==0.3.2a1 from https://files.pythonhosted.org/packages/78/de/5da6cf780c6ae414322a1fd3ae2f80223b2ab197b5045886658688b67986/fibsem-0.3.2a1.tar.gz 2024-01-27T01:40:49,638 Removed fibsem==0.3.2a1 from https://files.pythonhosted.org/packages/78/de/5da6cf780c6ae414322a1fd3ae2f80223b2ab197b5045886658688b67986/fibsem-0.3.2a1.tar.gz from build tracker '/tmp/pip-build-tracker-0mc6e1dk' 2024-01-27T01:40:49,645 Created temporary directory: /tmp/pip-unpack-btfvqo5v 2024-01-27T01:40:49,646 Created temporary directory: /tmp/pip-unpack-yk3bil7h 2024-01-27T01:40:49,673 Building wheels for collected packages: fibsem 2024-01-27T01:40:49,677 Created temporary directory: /tmp/pip-wheel-dujt9rfz 2024-01-27T01:40:49,678 Building wheel for fibsem (setup.py): started 2024-01-27T01:40:49,679 Destination directory: /tmp/pip-wheel-dujt9rfz 2024-01-27T01:40:49,680 Running command python setup.py bdist_wheel 2024-01-27T01:40:50,742 running bdist_wheel 2024-01-27T01:40:50,837 running build 2024-01-27T01:40:50,838 running build_py 2024-01-27T01:40:50,865 creating build 2024-01-27T01:40:50,865 creating build/lib 2024-01-27T01:40:50,866 creating build/lib/fibsem 2024-01-27T01:40:50,868 copying fibsem/acquire.py -> build/lib/fibsem 2024-01-27T01:40:50,870 copying fibsem/validation.py -> build/lib/fibsem 2024-01-27T01:40:50,872 copying fibsem/milling.py -> build/lib/fibsem 2024-01-27T01:40:50,874 copying fibsem/alignment.py -> build/lib/fibsem 2024-01-27T01:40:50,876 copying fibsem/gis.py -> build/lib/fibsem 2024-01-27T01:40:50,878 copying fibsem/conversions.py -> build/lib/fibsem 2024-01-27T01:40:50,880 copying fibsem/config.py -> build/lib/fibsem 2024-01-27T01:40:50,882 copying fibsem/movement.py -> build/lib/fibsem 2024-01-27T01:40:50,884 copying fibsem/__init__.py -> build/lib/fibsem 2024-01-27T01:40:50,886 copying fibsem/calibration.py -> build/lib/fibsem 2024-01-27T01:40:50,888 copying fibsem/microscope.py -> build/lib/fibsem 2024-01-27T01:40:50,894 copying fibsem/patterning.py -> build/lib/fibsem 2024-01-27T01:40:50,897 copying fibsem/structures.py -> build/lib/fibsem 2024-01-27T01:40:50,900 copying fibsem/_version.py -> build/lib/fibsem 2024-01-27T01:40:50,902 copying fibsem/utils.py -> build/lib/fibsem 2024-01-27T01:40:50,904 copying fibsem/configuration.py -> build/lib/fibsem 2024-01-27T01:40:50,906 copying fibsem/constants.py -> build/lib/fibsem 2024-01-27T01:40:50,908 creating build/lib/fibsem/imaging 2024-01-27T01:40:50,909 copying fibsem/imaging/autogamma.py -> build/lib/fibsem/imaging 2024-01-27T01:40:50,911 copying fibsem/imaging/__init__.py -> build/lib/fibsem/imaging 2024-01-27T01:40:50,912 copying fibsem/imaging/utils.py -> build/lib/fibsem/imaging 2024-01-27T01:40:50,914 copying fibsem/imaging/_tile.py -> build/lib/fibsem/imaging 2024-01-27T01:40:50,916 copying fibsem/imaging/masks.py -> build/lib/fibsem/imaging 2024-01-27T01:40:50,919 creating build/lib/fibsem/detection 2024-01-27T01:40:50,920 copying fibsem/detection/evaluation.py -> build/lib/fibsem/detection 2024-01-27T01:40:50,922 copying fibsem/detection/detection.py -> build/lib/fibsem/detection 2024-01-27T01:40:50,925 copying fibsem/detection/__init__.py -> build/lib/fibsem/detection 2024-01-27T01:40:50,926 copying fibsem/detection/run_evaluation.py -> build/lib/fibsem/detection 2024-01-27T01:40:50,928 copying fibsem/detection/utils.py -> build/lib/fibsem/detection 2024-01-27T01:40:50,931 creating build/lib/fibsem/ui 2024-01-27T01:40:50,932 copying fibsem/ui/windows.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,934 copying fibsem/ui/FibsemCryoDepositionWidget_qt.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,936 copying fibsem/ui/FibsemPositionsWidget.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,938 copying fibsem/ui/FibsemDetectionUI.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,940 copying fibsem/ui/FibsemMillingWidget.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,943 copying fibsem/ui/FibsemManipulatorWidget.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,945 copying fibsem/ui/FibsemUI.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,947 copying fibsem/ui/FibsemMovementWidget.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,949 copying fibsem/ui/FibsemImageViewer.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,951 copying fibsem/ui/FibsemMinimapWidget.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,954 copying fibsem/ui/FibsemSegmentationModelWidget.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,956 copying fibsem/ui/_stylesheets.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,958 copying fibsem/ui/FibsemFeatureLabellingUI.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,960 copying fibsem/ui/FibsemDetectionWidget.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,963 copying fibsem/ui/__init__.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,964 copying fibsem/ui/FibsemModelTrainingWidget.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,966 copying fibsem/ui/utils.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,969 copying fibsem/ui/FibsemImageSettingsWidget.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,971 copying fibsem/ui/FibsemMicroscopeConfigurationWidget.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,974 copying fibsem/ui/FibsemMultiChemWidget.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,975 copying fibsem/ui/FibsemEmbeddedDetectionWidget.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,978 copying fibsem/ui/FibsemLabellingUI.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,980 copying fibsem/ui/FibsemGISWidget.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,982 copying fibsem/ui/FibsemCryoDepositionWidget.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,984 copying fibsem/ui/FibsemAlignmentWidget.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,986 copying fibsem/ui/FibsemSystemSetupWidget.py -> build/lib/fibsem/ui 2024-01-27T01:40:50,989 creating build/lib/fibsem/segmentation 2024-01-27T01:40:50,990 copying fibsem/segmentation/sam_model.py -> build/lib/fibsem/segmentation 2024-01-27T01:40:50,992 copying fibsem/segmentation/nnunet_model.py -> build/lib/fibsem/segmentation 2024-01-27T01:40:50,993 copying fibsem/segmentation/_nnunet.py -> build/lib/fibsem/segmentation 2024-01-27T01:40:50,995 copying fibsem/segmentation/config.py -> build/lib/fibsem/segmentation 2024-01-27T01:40:50,997 copying fibsem/segmentation/train.py -> build/lib/fibsem/segmentation 2024-01-27T01:40:50,999 copying fibsem/segmentation/inference.py -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,001 copying fibsem/segmentation/__init__.py -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,002 copying fibsem/segmentation/dataset.py -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,004 copying fibsem/segmentation/model.py -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,006 copying fibsem/segmentation/utils.py -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,008 copying fibsem/segmentation/onnx_model.py -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,010 running egg_info 2024-01-27T01:40:51,064 writing fibsem.egg-info/PKG-INFO 2024-01-27T01:40:51,068 writing dependency_links to fibsem.egg-info/dependency_links.txt 2024-01-27T01:40:51,070 writing entry points to fibsem.egg-info/entry_points.txt 2024-01-27T01:40:51,072 writing requirements to fibsem.egg-info/requires.txt 2024-01-27T01:40:51,073 writing top-level names to fibsem.egg-info/top_level.txt 2024-01-27T01:40:51,116 reading manifest file 'fibsem.egg-info/SOURCES.txt' 2024-01-27T01:40:51,126 reading manifest template 'MANIFEST.in' 2024-01-27T01:40:51,128 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-01-27T01:40:51,129 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-01-27T01:40:51,130 warning: no previously-included files matching '*.ui' found under directory '*' 2024-01-27T01:40:51,131 adding license file 'LICENSE' 2024-01-27T01:40:51,137 writing manifest file 'fibsem.egg-info/SOURCES.txt' 2024-01-27T01:40:51,140 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.chat' is absent from the `packages` configuration. 2024-01-27T01:40:51,141 !! 2024-01-27T01:40:51,142 ******************************************************************************** 2024-01-27T01:40:51,143 ############################ 2024-01-27T01:40:51,143 # Package would be ignored # 2024-01-27T01:40:51,144 ############################ 2024-01-27T01:40:51,145 Python recognizes 'fibsem.chat' as an importable package[^1], 2024-01-27T01:40:51,145 but it is absent from setuptools' `packages` configuration. 2024-01-27T01:40:51,147 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-27T01:40:51,147 package, please make sure that 'fibsem.chat' is explicitly added 2024-01-27T01:40:51,148 to the `packages` configuration field. 2024-01-27T01:40:51,149 Alternatively, you can also rely on setuptools' discovery methods 2024-01-27T01:40:51,149 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-27T01:40:51,150 instead of `find_packages(...)`/`find:`). 2024-01-27T01:40:51,151 You can read more about "package discovery" on setuptools documentation page: 2024-01-27T01:40:51,152 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-27T01:40:51,153 If you don't want 'fibsem.chat' to be distributed and are 2024-01-27T01:40:51,154 already explicitly excluding 'fibsem.chat' via 2024-01-27T01:40:51,155 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-27T01:40:51,155 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-27T01:40:51,156 combination with a more fine grained `package-data` configuration. 2024-01-27T01:40:51,157 You can read more about "package data files" on setuptools documentation page: 2024-01-27T01:40:51,158 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-27T01:40:51,160 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-27T01:40:51,161 even if it does not contain any `.py` files. 2024-01-27T01:40:51,161 On the other hand, currently there is no concept of package data 2024-01-27T01:40:51,161 directory, all directories are treated like packages. 2024-01-27T01:40:51,162 ******************************************************************************** 2024-01-27T01:40:51,162 !! 2024-01-27T01:40:51,163 check.warn(importable) 2024-01-27T01:40:51,163 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.config' is absent from the `packages` configuration. 2024-01-27T01:40:51,164 !! 2024-01-27T01:40:51,165 ******************************************************************************** 2024-01-27T01:40:51,166 ############################ 2024-01-27T01:40:51,166 # Package would be ignored # 2024-01-27T01:40:51,167 ############################ 2024-01-27T01:40:51,167 Python recognizes 'fibsem.config' as an importable package[^1], 2024-01-27T01:40:51,168 but it is absent from setuptools' `packages` configuration. 2024-01-27T01:40:51,169 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-27T01:40:51,169 package, please make sure that 'fibsem.config' is explicitly added 2024-01-27T01:40:51,170 to the `packages` configuration field. 2024-01-27T01:40:51,170 Alternatively, you can also rely on setuptools' discovery methods 2024-01-27T01:40:51,171 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-27T01:40:51,171 instead of `find_packages(...)`/`find:`). 2024-01-27T01:40:51,172 You can read more about "package discovery" on setuptools documentation page: 2024-01-27T01:40:51,173 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-27T01:40:51,174 If you don't want 'fibsem.config' to be distributed and are 2024-01-27T01:40:51,175 already explicitly excluding 'fibsem.config' via 2024-01-27T01:40:51,176 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-27T01:40:51,176 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-27T01:40:51,176 combination with a more fine grained `package-data` configuration. 2024-01-27T01:40:51,178 You can read more about "package data files" on setuptools documentation page: 2024-01-27T01:40:51,179 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-27T01:40:51,180 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-27T01:40:51,181 even if it does not contain any `.py` files. 2024-01-27T01:40:51,182 On the other hand, currently there is no concept of package data 2024-01-27T01:40:51,182 directory, all directories are treated like packages. 2024-01-27T01:40:51,183 ******************************************************************************** 2024-01-27T01:40:51,184 !! 2024-01-27T01:40:51,184 check.warn(importable) 2024-01-27T01:40:51,185 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.db' is absent from the `packages` configuration. 2024-01-27T01:40:51,186 !! 2024-01-27T01:40:51,187 ******************************************************************************** 2024-01-27T01:40:51,187 ############################ 2024-01-27T01:40:51,188 # Package would be ignored # 2024-01-27T01:40:51,188 ############################ 2024-01-27T01:40:51,189 Python recognizes 'fibsem.db' as an importable package[^1], 2024-01-27T01:40:51,189 but it is absent from setuptools' `packages` configuration. 2024-01-27T01:40:51,191 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-27T01:40:51,191 package, please make sure that 'fibsem.db' is explicitly added 2024-01-27T01:40:51,192 to the `packages` configuration field. 2024-01-27T01:40:51,193 Alternatively, you can also rely on setuptools' discovery methods 2024-01-27T01:40:51,193 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-27T01:40:51,194 instead of `find_packages(...)`/`find:`). 2024-01-27T01:40:51,195 You can read more about "package discovery" on setuptools documentation page: 2024-01-27T01:40:51,196 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-27T01:40:51,197 If you don't want 'fibsem.db' to be distributed and are 2024-01-27T01:40:51,198 already explicitly excluding 'fibsem.db' via 2024-01-27T01:40:51,198 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-27T01:40:51,198 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-27T01:40:51,199 combination with a more fine grained `package-data` configuration. 2024-01-27T01:40:51,200 You can read more about "package data files" on setuptools documentation page: 2024-01-27T01:40:51,201 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-27T01:40:51,202 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-27T01:40:51,203 even if it does not contain any `.py` files. 2024-01-27T01:40:51,203 On the other hand, currently there is no concept of package data 2024-01-27T01:40:51,204 directory, all directories are treated like packages. 2024-01-27T01:40:51,204 ******************************************************************************** 2024-01-27T01:40:51,205 !! 2024-01-27T01:40:51,206 check.warn(importable) 2024-01-27T01:40:51,206 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.detection.test_images' is absent from the `packages` configuration. 2024-01-27T01:40:51,207 !! 2024-01-27T01:40:51,208 ******************************************************************************** 2024-01-27T01:40:51,209 ############################ 2024-01-27T01:40:51,209 # Package would be ignored # 2024-01-27T01:40:51,210 ############################ 2024-01-27T01:40:51,210 Python recognizes 'fibsem.detection.test_images' as an importable package[^1], 2024-01-27T01:40:51,211 but it is absent from setuptools' `packages` configuration. 2024-01-27T01:40:51,212 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-27T01:40:51,213 package, please make sure that 'fibsem.detection.test_images' is explicitly added 2024-01-27T01:40:51,213 to the `packages` configuration field. 2024-01-27T01:40:51,214 Alternatively, you can also rely on setuptools' discovery methods 2024-01-27T01:40:51,215 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-27T01:40:51,215 instead of `find_packages(...)`/`find:`). 2024-01-27T01:40:51,216 You can read more about "package discovery" on setuptools documentation page: 2024-01-27T01:40:51,217 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-27T01:40:51,218 If you don't want 'fibsem.detection.test_images' to be distributed and are 2024-01-27T01:40:51,219 already explicitly excluding 'fibsem.detection.test_images' via 2024-01-27T01:40:51,219 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-27T01:40:51,220 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-27T01:40:51,220 combination with a more fine grained `package-data` configuration. 2024-01-27T01:40:51,221 You can read more about "package data files" on setuptools documentation page: 2024-01-27T01:40:51,222 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-27T01:40:51,223 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-27T01:40:51,224 even if it does not contain any `.py` files. 2024-01-27T01:40:51,224 On the other hand, currently there is no concept of package data 2024-01-27T01:40:51,224 directory, all directories are treated like packages. 2024-01-27T01:40:51,225 ******************************************************************************** 2024-01-27T01:40:51,226 !! 2024-01-27T01:40:51,226 check.warn(importable) 2024-01-27T01:40:51,227 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.detection.test_images.serial' is absent from the `packages` configuration. 2024-01-27T01:40:51,227 !! 2024-01-27T01:40:51,228 ******************************************************************************** 2024-01-27T01:40:51,228 ############################ 2024-01-27T01:40:51,229 # Package would be ignored # 2024-01-27T01:40:51,229 ############################ 2024-01-27T01:40:51,230 Python recognizes 'fibsem.detection.test_images.serial' as an importable package[^1], 2024-01-27T01:40:51,231 but it is absent from setuptools' `packages` configuration. 2024-01-27T01:40:51,234 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-27T01:40:51,238 package, please make sure that 'fibsem.detection.test_images.serial' is explicitly added 2024-01-27T01:40:51,244 to the `packages` configuration field. 2024-01-27T01:40:51,246 Alternatively, you can also rely on setuptools' discovery methods 2024-01-27T01:40:51,247 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-27T01:40:51,247 instead of `find_packages(...)`/`find:`). 2024-01-27T01:40:51,248 You can read more about "package discovery" on setuptools documentation page: 2024-01-27T01:40:51,249 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-27T01:40:51,250 If you don't want 'fibsem.detection.test_images.serial' to be distributed and are 2024-01-27T01:40:51,251 already explicitly excluding 'fibsem.detection.test_images.serial' via 2024-01-27T01:40:51,251 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-27T01:40:51,252 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-27T01:40:51,252 combination with a more fine grained `package-data` configuration. 2024-01-27T01:40:51,254 You can read more about "package data files" on setuptools documentation page: 2024-01-27T01:40:51,255 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-27T01:40:51,257 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-27T01:40:51,257 even if it does not contain any `.py` files. 2024-01-27T01:40:51,258 On the other hand, currently there is no concept of package data 2024-01-27T01:40:51,259 directory, all directories are treated like packages. 2024-01-27T01:40:51,259 ******************************************************************************** 2024-01-27T01:40:51,261 !! 2024-01-27T01:40:51,261 check.warn(importable) 2024-01-27T01:40:51,262 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.segmentation.docs' is absent from the `packages` configuration. 2024-01-27T01:40:51,262 !! 2024-01-27T01:40:51,264 ******************************************************************************** 2024-01-27T01:40:51,264 ############################ 2024-01-27T01:40:51,265 # Package would be ignored # 2024-01-27T01:40:51,266 ############################ 2024-01-27T01:40:51,267 Python recognizes 'fibsem.segmentation.docs' as an importable package[^1], 2024-01-27T01:40:51,267 but it is absent from setuptools' `packages` configuration. 2024-01-27T01:40:51,268 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-27T01:40:51,269 package, please make sure that 'fibsem.segmentation.docs' is explicitly added 2024-01-27T01:40:51,269 to the `packages` configuration field. 2024-01-27T01:40:51,270 Alternatively, you can also rely on setuptools' discovery methods 2024-01-27T01:40:51,270 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-27T01:40:51,271 instead of `find_packages(...)`/`find:`). 2024-01-27T01:40:51,272 You can read more about "package discovery" on setuptools documentation page: 2024-01-27T01:40:51,273 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-27T01:40:51,273 If you don't want 'fibsem.segmentation.docs' to be distributed and are 2024-01-27T01:40:51,274 already explicitly excluding 'fibsem.segmentation.docs' via 2024-01-27T01:40:51,274 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-27T01:40:51,275 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-27T01:40:51,275 combination with a more fine grained `package-data` configuration. 2024-01-27T01:40:51,276 You can read more about "package data files" on setuptools documentation page: 2024-01-27T01:40:51,277 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-27T01:40:51,279 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-27T01:40:51,279 even if it does not contain any `.py` files. 2024-01-27T01:40:51,280 On the other hand, currently there is no concept of package data 2024-01-27T01:40:51,280 directory, all directories are treated like packages. 2024-01-27T01:40:51,281 ******************************************************************************** 2024-01-27T01:40:51,282 !! 2024-01-27T01:40:51,282 check.warn(importable) 2024-01-27T01:40:51,283 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.segmentation.docs.imgs.combined' is absent from the `packages` configuration. 2024-01-27T01:40:51,283 !! 2024-01-27T01:40:51,284 ******************************************************************************** 2024-01-27T01:40:51,285 ############################ 2024-01-27T01:40:51,285 # Package would be ignored # 2024-01-27T01:40:51,286 ############################ 2024-01-27T01:40:51,286 Python recognizes 'fibsem.segmentation.docs.imgs.combined' as an importable package[^1], 2024-01-27T01:40:51,287 but it is absent from setuptools' `packages` configuration. 2024-01-27T01:40:51,287 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-27T01:40:51,288 package, please make sure that 'fibsem.segmentation.docs.imgs.combined' is explicitly added 2024-01-27T01:40:51,288 to the `packages` configuration field. 2024-01-27T01:40:51,289 Alternatively, you can also rely on setuptools' discovery methods 2024-01-27T01:40:51,290 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-27T01:40:51,290 instead of `find_packages(...)`/`find:`). 2024-01-27T01:40:51,291 You can read more about "package discovery" on setuptools documentation page: 2024-01-27T01:40:51,293 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-27T01:40:51,294 If you don't want 'fibsem.segmentation.docs.imgs.combined' to be distributed and are 2024-01-27T01:40:51,294 already explicitly excluding 'fibsem.segmentation.docs.imgs.combined' via 2024-01-27T01:40:51,294 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-27T01:40:51,295 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-27T01:40:51,295 combination with a more fine grained `package-data` configuration. 2024-01-27T01:40:51,296 You can read more about "package data files" on setuptools documentation page: 2024-01-27T01:40:51,297 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-27T01:40:51,298 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-27T01:40:51,298 even if it does not contain any `.py` files. 2024-01-27T01:40:51,299 On the other hand, currently there is no concept of package data 2024-01-27T01:40:51,299 directory, all directories are treated like packages. 2024-01-27T01:40:51,300 ******************************************************************************** 2024-01-27T01:40:51,300 !! 2024-01-27T01:40:51,301 check.warn(importable) 2024-01-27T01:40:51,301 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.segmentation.docs.imgs.labelled' is absent from the `packages` configuration. 2024-01-27T01:40:51,302 !! 2024-01-27T01:40:51,303 ******************************************************************************** 2024-01-27T01:40:51,303 ############################ 2024-01-27T01:40:51,304 # Package would be ignored # 2024-01-27T01:40:51,304 ############################ 2024-01-27T01:40:51,304 Python recognizes 'fibsem.segmentation.docs.imgs.labelled' as an importable package[^1], 2024-01-27T01:40:51,305 but it is absent from setuptools' `packages` configuration. 2024-01-27T01:40:51,306 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-27T01:40:51,306 package, please make sure that 'fibsem.segmentation.docs.imgs.labelled' is explicitly added 2024-01-27T01:40:51,307 to the `packages` configuration field. 2024-01-27T01:40:51,308 Alternatively, you can also rely on setuptools' discovery methods 2024-01-27T01:40:51,308 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-27T01:40:51,309 instead of `find_packages(...)`/`find:`). 2024-01-27T01:40:51,310 You can read more about "package discovery" on setuptools documentation page: 2024-01-27T01:40:51,311 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-27T01:40:51,312 If you don't want 'fibsem.segmentation.docs.imgs.labelled' to be distributed and are 2024-01-27T01:40:51,313 already explicitly excluding 'fibsem.segmentation.docs.imgs.labelled' via 2024-01-27T01:40:51,313 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-27T01:40:51,314 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-27T01:40:51,314 combination with a more fine grained `package-data` configuration. 2024-01-27T01:40:51,315 You can read more about "package data files" on setuptools documentation page: 2024-01-27T01:40:51,316 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-27T01:40:51,318 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-27T01:40:51,318 even if it does not contain any `.py` files. 2024-01-27T01:40:51,319 On the other hand, currently there is no concept of package data 2024-01-27T01:40:51,319 directory, all directories are treated like packages. 2024-01-27T01:40:51,320 ******************************************************************************** 2024-01-27T01:40:51,321 !! 2024-01-27T01:40:51,322 check.warn(importable) 2024-01-27T01:40:51,322 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.segmentation.docs.imgs.raw' is absent from the `packages` configuration. 2024-01-27T01:40:51,323 !! 2024-01-27T01:40:51,324 ******************************************************************************** 2024-01-27T01:40:51,324 ############################ 2024-01-27T01:40:51,324 # Package would be ignored # 2024-01-27T01:40:51,325 ############################ 2024-01-27T01:40:51,325 Python recognizes 'fibsem.segmentation.docs.imgs.raw' as an importable package[^1], 2024-01-27T01:40:51,326 but it is absent from setuptools' `packages` configuration. 2024-01-27T01:40:51,327 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-27T01:40:51,327 package, please make sure that 'fibsem.segmentation.docs.imgs.raw' is explicitly added 2024-01-27T01:40:51,328 to the `packages` configuration field. 2024-01-27T01:40:51,328 Alternatively, you can also rely on setuptools' discovery methods 2024-01-27T01:40:51,329 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-27T01:40:51,329 instead of `find_packages(...)`/`find:`). 2024-01-27T01:40:51,330 You can read more about "package discovery" on setuptools documentation page: 2024-01-27T01:40:51,331 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-27T01:40:51,332 If you don't want 'fibsem.segmentation.docs.imgs.raw' to be distributed and are 2024-01-27T01:40:51,332 already explicitly excluding 'fibsem.segmentation.docs.imgs.raw' via 2024-01-27T01:40:51,333 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-27T01:40:51,333 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-27T01:40:51,334 combination with a more fine grained `package-data` configuration. 2024-01-27T01:40:51,335 You can read more about "package data files" on setuptools documentation page: 2024-01-27T01:40:51,336 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-27T01:40:51,338 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-27T01:40:51,338 even if it does not contain any `.py` files. 2024-01-27T01:40:51,339 On the other hand, currently there is no concept of package data 2024-01-27T01:40:51,339 directory, all directories are treated like packages. 2024-01-27T01:40:51,340 ******************************************************************************** 2024-01-27T01:40:51,341 !! 2024-01-27T01:40:51,342 check.warn(importable) 2024-01-27T01:40:51,342 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.segmentation.models' is absent from the `packages` configuration. 2024-01-27T01:40:51,343 !! 2024-01-27T01:40:51,344 ******************************************************************************** 2024-01-27T01:40:51,345 ############################ 2024-01-27T01:40:51,345 # Package would be ignored # 2024-01-27T01:40:51,346 ############################ 2024-01-27T01:40:51,346 Python recognizes 'fibsem.segmentation.models' as an importable package[^1], 2024-01-27T01:40:51,347 but it is absent from setuptools' `packages` configuration. 2024-01-27T01:40:51,348 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-27T01:40:51,348 package, please make sure that 'fibsem.segmentation.models' is explicitly added 2024-01-27T01:40:51,349 to the `packages` configuration field. 2024-01-27T01:40:51,350 Alternatively, you can also rely on setuptools' discovery methods 2024-01-27T01:40:51,351 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-27T01:40:51,351 instead of `find_packages(...)`/`find:`). 2024-01-27T01:40:51,352 You can read more about "package discovery" on setuptools documentation page: 2024-01-27T01:40:51,353 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-27T01:40:51,354 If you don't want 'fibsem.segmentation.models' to be distributed and are 2024-01-27T01:40:51,354 already explicitly excluding 'fibsem.segmentation.models' via 2024-01-27T01:40:51,354 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-27T01:40:51,355 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-27T01:40:51,355 combination with a more fine grained `package-data` configuration. 2024-01-27T01:40:51,356 You can read more about "package data files" on setuptools documentation page: 2024-01-27T01:40:51,357 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-27T01:40:51,358 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-27T01:40:51,359 even if it does not contain any `.py` files. 2024-01-27T01:40:51,359 On the other hand, currently there is no concept of package data 2024-01-27T01:40:51,360 directory, all directories are treated like packages. 2024-01-27T01:40:51,360 ******************************************************************************** 2024-01-27T01:40:51,361 !! 2024-01-27T01:40:51,362 check.warn(importable) 2024-01-27T01:40:51,362 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.tools' is absent from the `packages` configuration. 2024-01-27T01:40:51,363 !! 2024-01-27T01:40:51,363 ******************************************************************************** 2024-01-27T01:40:51,364 ############################ 2024-01-27T01:40:51,364 # Package would be ignored # 2024-01-27T01:40:51,365 ############################ 2024-01-27T01:40:51,365 Python recognizes 'fibsem.tools' as an importable package[^1], 2024-01-27T01:40:51,366 but it is absent from setuptools' `packages` configuration. 2024-01-27T01:40:51,367 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-27T01:40:51,367 package, please make sure that 'fibsem.tools' is explicitly added 2024-01-27T01:40:51,368 to the `packages` configuration field. 2024-01-27T01:40:51,369 Alternatively, you can also rely on setuptools' discovery methods 2024-01-27T01:40:51,369 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-27T01:40:51,369 instead of `find_packages(...)`/`find:`). 2024-01-27T01:40:51,370 You can read more about "package discovery" on setuptools documentation page: 2024-01-27T01:40:51,371 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-27T01:40:51,373 If you don't want 'fibsem.tools' to be distributed and are 2024-01-27T01:40:51,374 already explicitly excluding 'fibsem.tools' via 2024-01-27T01:40:51,374 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-27T01:40:51,375 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-27T01:40:51,375 combination with a more fine grained `package-data` configuration. 2024-01-27T01:40:51,376 You can read more about "package data files" on setuptools documentation page: 2024-01-27T01:40:51,377 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-27T01:40:51,379 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-27T01:40:51,379 even if it does not contain any `.py` files. 2024-01-27T01:40:51,380 On the other hand, currently there is no concept of package data 2024-01-27T01:40:51,381 directory, all directories are treated like packages. 2024-01-27T01:40:51,381 ******************************************************************************** 2024-01-27T01:40:51,382 !! 2024-01-27T01:40:51,382 check.warn(importable) 2024-01-27T01:40:51,383 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.ui.qtdesigner_files' is absent from the `packages` configuration. 2024-01-27T01:40:51,383 !! 2024-01-27T01:40:51,384 ******************************************************************************** 2024-01-27T01:40:51,384 ############################ 2024-01-27T01:40:51,385 # Package would be ignored # 2024-01-27T01:40:51,385 ############################ 2024-01-27T01:40:51,386 Python recognizes 'fibsem.ui.qtdesigner_files' as an importable package[^1], 2024-01-27T01:40:51,386 but it is absent from setuptools' `packages` configuration. 2024-01-27T01:40:51,388 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-27T01:40:51,394 package, please make sure that 'fibsem.ui.qtdesigner_files' is explicitly added 2024-01-27T01:40:51,404 to the `packages` configuration field. 2024-01-27T01:40:51,406 Alternatively, you can also rely on setuptools' discovery methods 2024-01-27T01:40:51,406 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-27T01:40:51,407 instead of `find_packages(...)`/`find:`). 2024-01-27T01:40:51,408 You can read more about "package discovery" on setuptools documentation page: 2024-01-27T01:40:51,409 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-27T01:40:51,410 If you don't want 'fibsem.ui.qtdesigner_files' to be distributed and are 2024-01-27T01:40:51,411 already explicitly excluding 'fibsem.ui.qtdesigner_files' via 2024-01-27T01:40:51,411 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-27T01:40:51,412 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-27T01:40:51,412 combination with a more fine grained `package-data` configuration. 2024-01-27T01:40:51,413 You can read more about "package data files" on setuptools documentation page: 2024-01-27T01:40:51,415 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-27T01:40:51,416 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-27T01:40:51,417 even if it does not contain any `.py` files. 2024-01-27T01:40:51,418 On the other hand, currently there is no concept of package data 2024-01-27T01:40:51,418 directory, all directories are treated like packages. 2024-01-27T01:40:51,419 ******************************************************************************** 2024-01-27T01:40:51,420 !! 2024-01-27T01:40:51,420 check.warn(importable) 2024-01-27T01:40:51,421 creating build/lib/fibsem/chat 2024-01-27T01:40:51,428 copying fibsem/chat/.gitignore -> build/lib/fibsem/chat 2024-01-27T01:40:51,435 copying fibsem/chat/main.py -> build/lib/fibsem/chat 2024-01-27T01:40:51,437 copying fibsem/chat/requirements.txt -> build/lib/fibsem/chat 2024-01-27T01:40:51,446 creating build/lib/fibsem/config 2024-01-27T01:40:51,451 copying fibsem/config/deposition.dbp -> build/lib/fibsem/config 2024-01-27T01:40:51,451 copying fibsem/config/microscope-configuration.yaml -> build/lib/fibsem/config 2024-01-27T01:40:51,452 copying fibsem/config/positions.yaml -> build/lib/fibsem/config 2024-01-27T01:40:51,452 copying fibsem/config/protocol.yaml -> build/lib/fibsem/config 2024-01-27T01:40:51,453 copying fibsem/config/system.yaml -> build/lib/fibsem/config 2024-01-27T01:40:51,454 copying fibsem/config/user-configurations.yaml -> build/lib/fibsem/config 2024-01-27T01:40:51,454 creating build/lib/fibsem/db 2024-01-27T01:40:51,455 copying fibsem/db/app.py -> build/lib/fibsem/db 2024-01-27T01:40:51,455 copying fibsem/db/config.yaml -> build/lib/fibsem/db 2024-01-27T01:40:51,455 copying fibsem/db/notebook.ipynb -> build/lib/fibsem/db 2024-01-27T01:40:51,456 copying fibsem/db/util.py -> build/lib/fibsem/db 2024-01-27T01:40:51,456 creating build/lib/fibsem/tools 2024-01-27T01:40:51,457 copying fibsem/tools/_parser.py -> build/lib/fibsem/tools 2024-01-27T01:40:51,457 copying fibsem/tools/run_manipulator_calibration.py -> build/lib/fibsem/tools 2024-01-27T01:40:51,458 copying fibsem/tools/run_split_dataset.py -> build/lib/fibsem/tools 2024-01-27T01:40:51,458 copying fibsem/tools/telemetry.py -> build/lib/fibsem/tools 2024-01-27T01:40:51,459 copying fibsem/imaging/.gitkeep -> build/lib/fibsem/imaging 2024-01-27T01:40:51,459 copying fibsem/detection/config-autolamella-serial-liftout.yaml -> build/lib/fibsem/detection 2024-01-27T01:40:51,460 copying fibsem/detection/config-autolamella-waffle.yml -> build/lib/fibsem/detection 2024-01-27T01:40:51,460 copying fibsem/detection/config-autoliftout-dm-embryo.yml -> build/lib/fibsem/detection 2024-01-27T01:40:51,461 copying fibsem/detection/test_image.tif -> build/lib/fibsem/detection 2024-01-27T01:40:51,461 creating build/lib/fibsem/detection/test_images 2024-01-27T01:40:51,464 copying fibsem/detection/test_images/test_needle_mask.tif -> build/lib/fibsem/detection/test_images 2024-01-27T01:40:51,470 copying fibsem/detection/test_images/test_needle_mask2.tif -> build/lib/fibsem/detection/test_images 2024-01-27T01:40:51,478 copying fibsem/detection/test_images/test_needle_mask3.tif -> build/lib/fibsem/detection/test_images 2024-01-27T01:40:51,479 creating build/lib/fibsem/detection/test_images/serial 2024-01-27T01:40:51,480 copying fibsem/detection/test_images/serial/serial_liftout_mask_00.tif -> build/lib/fibsem/detection/test_images/serial 2024-01-27T01:40:51,480 copying fibsem/detection/test_images/serial/serial_liftout_mask_01.tif -> build/lib/fibsem/detection/test_images/serial 2024-01-27T01:40:51,481 copying fibsem/detection/test_images/serial/serial_liftout_mask_02.tif -> build/lib/fibsem/detection/test_images/serial 2024-01-27T01:40:51,481 copying fibsem/detection/test_images/serial/serial_liftout_mask_03.tif -> build/lib/fibsem/detection/test_images/serial 2024-01-27T01:40:51,482 copying fibsem/detection/test_images/serial/serial_liftout_mask_04.tif -> build/lib/fibsem/detection/test_images/serial 2024-01-27T01:40:51,482 copying fibsem/detection/test_images/serial/serial_liftout_mask_05.tif -> build/lib/fibsem/detection/test_images/serial 2024-01-27T01:40:51,483 copying fibsem/detection/test_images/serial/serial_liftout_mask_06.tif -> build/lib/fibsem/detection/test_images/serial 2024-01-27T01:40:51,483 copying fibsem/detection/test_images/serial/serial_liftout_mask_07.tif -> build/lib/fibsem/detection/test_images/serial 2024-01-27T01:40:51,484 copying fibsem/ui/.gitkeep -> build/lib/fibsem/ui 2024-01-27T01:40:51,484 creating build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,485 copying fibsem/ui/qtdesigner_files/CurrentAlignmentWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,486 copying fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,486 copying fibsem/ui/qtdesigner_files/FibsemDetectionWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,487 copying fibsem/ui/qtdesigner_files/FibsemEmbeddedDetectionWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,488 copying fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,488 copying fibsem/ui/qtdesigner_files/FibsemGISWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,489 copying fibsem/ui/qtdesigner_files/FibsemLabellingUI.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,494 copying fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,502 copying fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,508 copying fibsem/ui/qtdesigner_files/FibsemMillingWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,509 copying fibsem/ui/qtdesigner_files/FibsemMinimapWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,510 copying fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,510 copying fibsem/ui/qtdesigner_files/FibsemMovementWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,511 copying fibsem/ui/qtdesigner_files/FibsemMultiChemWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,511 copying fibsem/ui/qtdesigner_files/FibsemPositionsWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,512 copying fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,512 copying fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,512 copying fibsem/ui/qtdesigner_files/FibsemUI.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,513 copying fibsem/ui/qtdesigner_files/ImageSettingsWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,513 copying fibsem/ui/qtdesigner_files/detection_dialog.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,514 copying fibsem/ui/qtdesigner_files/image_viewer.py -> build/lib/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,514 copying fibsem/segmentation/README.md -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,515 copying fibsem/segmentation/augmentation.ipynb -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,516 copying fibsem/segmentation/config-autolamella-mega-v4-xl.yml -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,516 copying fibsem/segmentation/config-autolamella-mega-v4.yml -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,517 copying fibsem/segmentation/config-autolamella-mega-v5.yml -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,518 copying fibsem/segmentation/config-autolamella-serial-liftout-v1.yaml -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,527 copying fibsem/segmentation/config-autolamella-waffle4.yml -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,533 copying fibsem/segmentation/config.yml -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,534 copying fibsem/segmentation/example.ipynb -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,534 copying fibsem/segmentation/requirements.txt -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,535 copying fibsem/segmentation/segmentation_config.yaml -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,535 copying fibsem/segmentation/test_image.tif -> build/lib/fibsem/segmentation 2024-01-27T01:40:51,536 creating build/lib/fibsem/segmentation/docs 2024-01-27T01:40:51,536 copying fibsem/segmentation/docs/example_napari.png -> build/lib/fibsem/segmentation/docs 2024-01-27T01:40:51,537 creating build/lib/fibsem/segmentation/docs/imgs 2024-01-27T01:40:51,537 creating build/lib/fibsem/segmentation/docs/imgs/combined 2024-01-27T01:40:51,538 copying fibsem/segmentation/docs/imgs/combined/combined.jpg -> build/lib/fibsem/segmentation/docs/imgs/combined 2024-01-27T01:40:51,538 creating build/lib/fibsem/segmentation/docs/imgs/labelled 2024-01-27T01:40:51,539 copying fibsem/segmentation/docs/imgs/labelled/label.tif -> build/lib/fibsem/segmentation/docs/imgs/labelled 2024-01-27T01:40:51,539 creating build/lib/fibsem/segmentation/docs/imgs/raw 2024-01-27T01:40:51,540 copying fibsem/segmentation/docs/imgs/raw/image.tif -> build/lib/fibsem/segmentation/docs/imgs/raw 2024-01-27T01:40:51,541 creating build/lib/fibsem/segmentation/models 2024-01-27T01:40:51,541 copying fibsem/segmentation/models/.gitkeep -> build/lib/fibsem/segmentation/models 2024-01-27T01:40:51,568 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-01-27T01:40:51,568 !! 2024-01-27T01:40:51,569 ******************************************************************************** 2024-01-27T01:40:51,570 Please avoid running ``setup.py`` directly. 2024-01-27T01:40:51,571 Instead, use pypa/build, pypa/installer or other 2024-01-27T01:40:51,571 standards-based tools. 2024-01-27T01:40:51,572 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-01-27T01:40:51,573 ******************************************************************************** 2024-01-27T01:40:51,574 !! 2024-01-27T01:40:51,575 self.initialize_options() 2024-01-27T01:40:51,594 installing to build/bdist.linux-armv7l/wheel 2024-01-27T01:40:51,595 running install 2024-01-27T01:40:51,619 running install_lib 2024-01-27T01:40:51,643 creating build/bdist.linux-armv7l 2024-01-27T01:40:51,643 creating build/bdist.linux-armv7l/wheel 2024-01-27T01:40:51,645 creating build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,646 copying build/lib/fibsem/acquire.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,649 creating build/bdist.linux-armv7l/wheel/fibsem/tools 2024-01-27T01:40:51,649 copying build/lib/fibsem/tools/telemetry.py -> build/bdist.linux-armv7l/wheel/fibsem/tools 2024-01-27T01:40:51,652 copying build/lib/fibsem/tools/run_split_dataset.py -> build/bdist.linux-armv7l/wheel/fibsem/tools 2024-01-27T01:40:51,654 copying build/lib/fibsem/tools/_parser.py -> build/bdist.linux-armv7l/wheel/fibsem/tools 2024-01-27T01:40:51,655 copying build/lib/fibsem/tools/run_manipulator_calibration.py -> build/bdist.linux-armv7l/wheel/fibsem/tools 2024-01-27T01:40:51,658 creating build/bdist.linux-armv7l/wheel/fibsem/db 2024-01-27T01:40:51,658 copying build/lib/fibsem/db/app.py -> build/bdist.linux-armv7l/wheel/fibsem/db 2024-01-27T01:40:51,661 copying build/lib/fibsem/db/config.yaml -> build/bdist.linux-armv7l/wheel/fibsem/db 2024-01-27T01:40:51,663 copying build/lib/fibsem/db/notebook.ipynb -> build/bdist.linux-armv7l/wheel/fibsem/db 2024-01-27T01:40:51,665 copying build/lib/fibsem/db/util.py -> build/bdist.linux-armv7l/wheel/fibsem/db 2024-01-27T01:40:51,668 creating build/bdist.linux-armv7l/wheel/fibsem/chat 2024-01-27T01:40:51,669 copying build/lib/fibsem/chat/main.py -> build/bdist.linux-armv7l/wheel/fibsem/chat 2024-01-27T01:40:51,670 copying build/lib/fibsem/chat/.gitignore -> build/bdist.linux-armv7l/wheel/fibsem/chat 2024-01-27T01:40:51,672 copying build/lib/fibsem/chat/requirements.txt -> build/bdist.linux-armv7l/wheel/fibsem/chat 2024-01-27T01:40:51,674 creating build/bdist.linux-armv7l/wheel/fibsem/config 2024-01-27T01:40:51,675 copying build/lib/fibsem/config/user-configurations.yaml -> build/bdist.linux-armv7l/wheel/fibsem/config 2024-01-27T01:40:51,677 copying build/lib/fibsem/config/system.yaml -> build/bdist.linux-armv7l/wheel/fibsem/config 2024-01-27T01:40:51,679 copying build/lib/fibsem/config/deposition.dbp -> build/bdist.linux-armv7l/wheel/fibsem/config 2024-01-27T01:40:51,681 copying build/lib/fibsem/config/positions.yaml -> build/bdist.linux-armv7l/wheel/fibsem/config 2024-01-27T01:40:51,683 copying build/lib/fibsem/config/microscope-configuration.yaml -> build/bdist.linux-armv7l/wheel/fibsem/config 2024-01-27T01:40:51,686 copying build/lib/fibsem/config/protocol.yaml -> build/bdist.linux-armv7l/wheel/fibsem/config 2024-01-27T01:40:51,687 copying build/lib/fibsem/validation.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,690 copying build/lib/fibsem/milling.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,692 copying build/lib/fibsem/alignment.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,695 creating build/bdist.linux-armv7l/wheel/fibsem/imaging 2024-01-27T01:40:51,696 copying build/lib/fibsem/imaging/autogamma.py -> build/bdist.linux-armv7l/wheel/fibsem/imaging 2024-01-27T01:40:51,699 copying build/lib/fibsem/imaging/__init__.py -> build/bdist.linux-armv7l/wheel/fibsem/imaging 2024-01-27T01:40:51,700 copying build/lib/fibsem/imaging/.gitkeep -> build/bdist.linux-armv7l/wheel/fibsem/imaging 2024-01-27T01:40:51,701 copying build/lib/fibsem/imaging/utils.py -> build/bdist.linux-armv7l/wheel/fibsem/imaging 2024-01-27T01:40:51,703 copying build/lib/fibsem/imaging/_tile.py -> build/bdist.linux-armv7l/wheel/fibsem/imaging 2024-01-27T01:40:51,705 copying build/lib/fibsem/imaging/masks.py -> build/bdist.linux-armv7l/wheel/fibsem/imaging 2024-01-27T01:40:51,708 copying build/lib/fibsem/gis.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,710 copying build/lib/fibsem/conversions.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,712 copying build/lib/fibsem/config.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,714 copying build/lib/fibsem/movement.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,716 copying build/lib/fibsem/__init__.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,717 copying build/lib/fibsem/calibration.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,720 creating build/bdist.linux-armv7l/wheel/fibsem/detection 2024-01-27T01:40:51,721 copying build/lib/fibsem/detection/evaluation.py -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-01-27T01:40:51,723 copying build/lib/fibsem/detection/config-autolamella-serial-liftout.yaml -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-01-27T01:40:51,725 copying build/lib/fibsem/detection/config-autoliftout-dm-embryo.yml -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-01-27T01:40:51,727 copying build/lib/fibsem/detection/detection.py -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-01-27T01:40:51,730 creating build/bdist.linux-armv7l/wheel/fibsem/detection/test_images 2024-01-27T01:40:51,731 copying build/lib/fibsem/detection/test_images/test_needle_mask2.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images 2024-01-27T01:40:51,733 copying build/lib/fibsem/detection/test_images/test_needle_mask3.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images 2024-01-27T01:40:51,736 creating build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-01-27T01:40:51,737 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_05.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-01-27T01:40:51,739 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_07.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-01-27T01:40:51,742 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_02.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-01-27T01:40:51,744 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_00.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-01-27T01:40:51,747 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_04.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-01-27T01:40:51,749 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_03.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-01-27T01:40:51,751 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_06.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-01-27T01:40:51,754 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_01.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-01-27T01:40:51,756 copying build/lib/fibsem/detection/test_images/test_needle_mask.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images 2024-01-27T01:40:51,758 copying build/lib/fibsem/detection/test_image.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-01-27T01:40:51,783 copying build/lib/fibsem/detection/__init__.py -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-01-27T01:40:51,784 copying build/lib/fibsem/detection/run_evaluation.py -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-01-27T01:40:51,786 copying build/lib/fibsem/detection/config-autolamella-waffle.yml -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-01-27T01:40:51,788 copying build/lib/fibsem/detection/utils.py -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-01-27T01:40:51,790 copying build/lib/fibsem/microscope.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,796 copying build/lib/fibsem/patterning.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,799 copying build/lib/fibsem/structures.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,802 copying build/lib/fibsem/_version.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,804 copying build/lib/fibsem/utils.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,806 copying build/lib/fibsem/configuration.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,810 creating build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,811 copying build/lib/fibsem/ui/windows.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,813 copying build/lib/fibsem/ui/FibsemCryoDepositionWidget_qt.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,816 copying build/lib/fibsem/ui/FibsemPositionsWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,818 copying build/lib/fibsem/ui/FibsemDetectionUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,821 copying build/lib/fibsem/ui/FibsemMillingWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,824 copying build/lib/fibsem/ui/FibsemManipulatorWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,827 copying build/lib/fibsem/ui/FibsemUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,830 creating build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,832 copying build/lib/fibsem/ui/qtdesigner_files/FibsemPositionsWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,834 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMillingWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,837 copying build/lib/fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,839 copying build/lib/fibsem/ui/qtdesigner_files/detection_dialog.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,842 copying build/lib/fibsem/ui/qtdesigner_files/FibsemUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,844 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMovementWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,847 copying build/lib/fibsem/ui/qtdesigner_files/image_viewer.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,849 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMinimapWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,853 copying build/lib/fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,855 copying build/lib/fibsem/ui/qtdesigner_files/FibsemDetectionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,857 copying build/lib/fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,860 copying build/lib/fibsem/ui/qtdesigner_files/CurrentAlignmentWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,862 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,865 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMultiChemWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,868 copying build/lib/fibsem/ui/qtdesigner_files/FibsemEmbeddedDetectionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,870 copying build/lib/fibsem/ui/qtdesigner_files/FibsemLabellingUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,873 copying build/lib/fibsem/ui/qtdesigner_files/FibsemGISWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,875 copying build/lib/fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,878 copying build/lib/fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,880 copying build/lib/fibsem/ui/qtdesigner_files/ImageSettingsWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,882 copying build/lib/fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-01-27T01:40:51,884 copying build/lib/fibsem/ui/FibsemMovementWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,887 copying build/lib/fibsem/ui/FibsemImageViewer.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,889 copying build/lib/fibsem/ui/FibsemMinimapWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,892 copying build/lib/fibsem/ui/FibsemSegmentationModelWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,894 copying build/lib/fibsem/ui/_stylesheets.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,896 copying build/lib/fibsem/ui/FibsemFeatureLabellingUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,898 copying build/lib/fibsem/ui/FibsemDetectionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,901 copying build/lib/fibsem/ui/__init__.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,902 copying build/lib/fibsem/ui/FibsemModelTrainingWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,904 copying build/lib/fibsem/ui/.gitkeep -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,906 copying build/lib/fibsem/ui/utils.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,909 copying build/lib/fibsem/ui/FibsemImageSettingsWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,911 copying build/lib/fibsem/ui/FibsemMicroscopeConfigurationWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,914 copying build/lib/fibsem/ui/FibsemMultiChemWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,916 copying build/lib/fibsem/ui/FibsemEmbeddedDetectionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,918 copying build/lib/fibsem/ui/FibsemLabellingUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,921 copying build/lib/fibsem/ui/FibsemGISWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,923 copying build/lib/fibsem/ui/FibsemCryoDepositionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,925 copying build/lib/fibsem/ui/FibsemAlignmentWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,927 copying build/lib/fibsem/ui/FibsemSystemSetupWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-01-27T01:40:51,929 copying build/lib/fibsem/constants.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-01-27T01:40:51,932 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,933 copying build/lib/fibsem/segmentation/segmentation_config.yaml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,934 copying build/lib/fibsem/segmentation/augmentation.ipynb -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,936 copying build/lib/fibsem/segmentation/sam_model.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,938 copying build/lib/fibsem/segmentation/example.ipynb -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,942 copying build/lib/fibsem/segmentation/README.md -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,944 copying build/lib/fibsem/segmentation/nnunet_model.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,946 copying build/lib/fibsem/segmentation/_nnunet.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,948 copying build/lib/fibsem/segmentation/test_image.tif -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,972 copying build/lib/fibsem/segmentation/config-autolamella-mega-v4.yml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,974 copying build/lib/fibsem/segmentation/config.yml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,975 copying build/lib/fibsem/segmentation/config.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,977 copying build/lib/fibsem/segmentation/config-autolamella-serial-liftout-v1.yaml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,979 copying build/lib/fibsem/segmentation/train.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,981 copying build/lib/fibsem/segmentation/inference.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,983 copying build/lib/fibsem/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,984 copying build/lib/fibsem/segmentation/dataset.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,986 copying build/lib/fibsem/segmentation/config-autolamella-mega-v4-xl.yml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,988 copying build/lib/fibsem/segmentation/model.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,990 copying build/lib/fibsem/segmentation/config-autolamella-mega-v5.yml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,992 copying build/lib/fibsem/segmentation/utils.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,994 copying build/lib/fibsem/segmentation/config-autolamella-waffle4.yml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:51,996 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs 2024-01-27T01:40:51,997 copying build/lib/fibsem/segmentation/docs/example_napari.png -> build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs 2024-01-27T01:40:52,043 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs 2024-01-27T01:40:52,044 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/combined 2024-01-27T01:40:52,045 copying build/lib/fibsem/segmentation/docs/imgs/combined/combined.jpg -> build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/combined 2024-01-27T01:40:52,067 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/labelled 2024-01-27T01:40:52,068 copying build/lib/fibsem/segmentation/docs/imgs/labelled/label.tif -> build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/labelled 2024-01-27T01:40:52,095 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/raw 2024-01-27T01:40:52,096 copying build/lib/fibsem/segmentation/docs/imgs/raw/image.tif -> build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/raw 2024-01-27T01:40:52,120 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/models 2024-01-27T01:40:52,121 copying build/lib/fibsem/segmentation/models/.gitkeep -> build/bdist.linux-armv7l/wheel/fibsem/segmentation/models 2024-01-27T01:40:52,123 copying build/lib/fibsem/segmentation/onnx_model.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:52,124 copying build/lib/fibsem/segmentation/requirements.txt -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-01-27T01:40:52,129 running install_egg_info 2024-01-27T01:40:52,158 Copying fibsem.egg-info to build/bdist.linux-armv7l/wheel/fibsem-0.3.2a1-py3.11.egg-info 2024-01-27T01:40:52,169 running install_scripts 2024-01-27T01:40:52,189 creating build/bdist.linux-armv7l/wheel/fibsem-0.3.2a1.dist-info/WHEEL 2024-01-27T01:40:52,192 creating '/tmp/pip-wheel-dujt9rfz/fibsem-0.3.2a1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-27T01:40:52,194 adding 'fibsem/__init__.py' 2024-01-27T01:40:52,196 adding 'fibsem/_version.py' 2024-01-27T01:40:52,197 adding 'fibsem/acquire.py' 2024-01-27T01:40:52,200 adding 'fibsem/alignment.py' 2024-01-27T01:40:52,202 adding 'fibsem/calibration.py' 2024-01-27T01:40:52,203 adding 'fibsem/config.py' 2024-01-27T01:40:52,205 adding 'fibsem/configuration.py' 2024-01-27T01:40:52,206 adding 'fibsem/constants.py' 2024-01-27T01:40:52,208 adding 'fibsem/conversions.py' 2024-01-27T01:40:52,209 adding 'fibsem/gis.py' 2024-01-27T01:40:52,232 adding 'fibsem/microscope.py' 2024-01-27T01:40:52,235 adding 'fibsem/milling.py' 2024-01-27T01:40:52,237 adding 'fibsem/movement.py' 2024-01-27T01:40:52,240 adding 'fibsem/patterning.py' 2024-01-27T01:40:52,247 adding 'fibsem/structures.py' 2024-01-27T01:40:52,250 adding 'fibsem/utils.py' 2024-01-27T01:40:52,252 adding 'fibsem/validation.py' 2024-01-27T01:40:52,254 adding 'fibsem/chat/.gitignore' 2024-01-27T01:40:52,255 adding 'fibsem/chat/main.py' 2024-01-27T01:40:52,256 adding 'fibsem/chat/requirements.txt' 2024-01-27T01:40:52,258 adding 'fibsem/config/deposition.dbp' 2024-01-27T01:40:52,259 adding 'fibsem/config/microscope-configuration.yaml' 2024-01-27T01:40:52,261 adding 'fibsem/config/positions.yaml' 2024-01-27T01:40:52,262 adding 'fibsem/config/protocol.yaml' 2024-01-27T01:40:52,263 adding 'fibsem/config/system.yaml' 2024-01-27T01:40:52,265 adding 'fibsem/config/user-configurations.yaml' 2024-01-27T01:40:52,267 adding 'fibsem/db/app.py' 2024-01-27T01:40:52,268 adding 'fibsem/db/config.yaml' 2024-01-27T01:40:52,270 adding 'fibsem/db/notebook.ipynb' 2024-01-27T01:40:52,272 adding 'fibsem/db/util.py' 2024-01-27T01:40:52,274 adding 'fibsem/detection/__init__.py' 2024-01-27T01:40:52,275 adding 'fibsem/detection/config-autolamella-serial-liftout.yaml' 2024-01-27T01:40:52,276 adding 'fibsem/detection/config-autolamella-waffle.yml' 2024-01-27T01:40:52,278 adding 'fibsem/detection/config-autoliftout-dm-embryo.yml' 2024-01-27T01:40:52,283 adding 'fibsem/detection/detection.py' 2024-01-27T01:40:52,285 adding 'fibsem/detection/evaluation.py' 2024-01-27T01:40:52,287 adding 'fibsem/detection/run_evaluation.py' 2024-01-27T01:40:52,751 adding 'fibsem/detection/test_image.tif' 2024-01-27T01:40:52,762 adding 'fibsem/detection/utils.py' 2024-01-27T01:40:52,764 adding 'fibsem/detection/test_images/test_needle_mask.tif' 2024-01-27T01:40:52,766 adding 'fibsem/detection/test_images/test_needle_mask2.tif' 2024-01-27T01:40:52,768 adding 'fibsem/detection/test_images/test_needle_mask3.tif' 2024-01-27T01:40:52,771 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_00.tif' 2024-01-27T01:40:52,774 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_01.tif' 2024-01-27T01:40:52,776 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_02.tif' 2024-01-27T01:40:52,778 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_03.tif' 2024-01-27T01:40:52,781 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_04.tif' 2024-01-27T01:40:52,783 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_05.tif' 2024-01-27T01:40:52,785 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_06.tif' 2024-01-27T01:40:52,788 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_07.tif' 2024-01-27T01:40:52,790 adding 'fibsem/imaging/.gitkeep' 2024-01-27T01:40:52,791 adding 'fibsem/imaging/__init__.py' 2024-01-27T01:40:52,793 adding 'fibsem/imaging/_tile.py' 2024-01-27T01:40:52,795 adding 'fibsem/imaging/autogamma.py' 2024-01-27T01:40:52,796 adding 'fibsem/imaging/masks.py' 2024-01-27T01:40:52,798 adding 'fibsem/imaging/utils.py' 2024-01-27T01:40:52,800 adding 'fibsem/segmentation/README.md' 2024-01-27T01:40:52,801 adding 'fibsem/segmentation/__init__.py' 2024-01-27T01:40:52,804 adding 'fibsem/segmentation/_nnunet.py' 2024-01-27T01:40:52,805 adding 'fibsem/segmentation/augmentation.ipynb' 2024-01-27T01:40:52,806 adding 'fibsem/segmentation/config-autolamella-mega-v4-xl.yml' 2024-01-27T01:40:52,808 adding 'fibsem/segmentation/config-autolamella-mega-v4.yml' 2024-01-27T01:40:52,809 adding 'fibsem/segmentation/config-autolamella-mega-v5.yml' 2024-01-27T01:40:52,810 adding 'fibsem/segmentation/config-autolamella-serial-liftout-v1.yaml' 2024-01-27T01:40:52,811 adding 'fibsem/segmentation/config-autolamella-waffle4.yml' 2024-01-27T01:40:52,813 adding 'fibsem/segmentation/config.py' 2024-01-27T01:40:52,814 adding 'fibsem/segmentation/config.yml' 2024-01-27T01:40:52,816 adding 'fibsem/segmentation/dataset.py' 2024-01-27T01:40:52,827 adding 'fibsem/segmentation/example.ipynb' 2024-01-27T01:40:52,829 adding 'fibsem/segmentation/inference.py' 2024-01-27T01:40:52,830 adding 'fibsem/segmentation/model.py' 2024-01-27T01:40:52,832 adding 'fibsem/segmentation/nnunet_model.py' 2024-01-27T01:40:52,833 adding 'fibsem/segmentation/onnx_model.py' 2024-01-27T01:40:52,835 adding 'fibsem/segmentation/requirements.txt' 2024-01-27T01:40:52,836 adding 'fibsem/segmentation/sam_model.py' 2024-01-27T01:40:52,837 adding 'fibsem/segmentation/segmentation_config.yaml' 2024-01-27T01:40:52,989 adding 'fibsem/segmentation/test_image.tif' 2024-01-27T01:40:52,999 adding 'fibsem/segmentation/train.py' 2024-01-27T01:40:53,001 adding 'fibsem/segmentation/utils.py' 2024-01-27T01:40:53,364 adding 'fibsem/segmentation/docs/example_napari.png' 2024-01-27T01:40:53,529 adding 'fibsem/segmentation/docs/imgs/combined/combined.jpg' 2024-01-27T01:40:53,582 adding 'fibsem/segmentation/docs/imgs/labelled/label.tif' 2024-01-27T01:40:53,746 adding 'fibsem/segmentation/docs/imgs/raw/image.tif' 2024-01-27T01:40:53,756 adding 'fibsem/segmentation/models/.gitkeep' 2024-01-27T01:40:53,758 adding 'fibsem/tools/_parser.py' 2024-01-27T01:40:53,759 adding 'fibsem/tools/run_manipulator_calibration.py' 2024-01-27T01:40:53,761 adding 'fibsem/tools/run_split_dataset.py' 2024-01-27T01:40:53,762 adding 'fibsem/tools/telemetry.py' 2024-01-27T01:40:53,764 adding 'fibsem/ui/.gitkeep' 2024-01-27T01:40:53,766 adding 'fibsem/ui/FibsemAlignmentWidget.py' 2024-01-27T01:40:53,767 adding 'fibsem/ui/FibsemCryoDepositionWidget.py' 2024-01-27T01:40:53,769 adding 'fibsem/ui/FibsemCryoDepositionWidget_qt.py' 2024-01-27T01:40:53,770 adding 'fibsem/ui/FibsemDetectionUI.py' 2024-01-27T01:40:53,773 adding 'fibsem/ui/FibsemDetectionWidget.py' 2024-01-27T01:40:53,775 adding 'fibsem/ui/FibsemEmbeddedDetectionWidget.py' 2024-01-27T01:40:53,778 adding 'fibsem/ui/FibsemFeatureLabellingUI.py' 2024-01-27T01:40:53,779 adding 'fibsem/ui/FibsemGISWidget.py' 2024-01-27T01:40:53,783 adding 'fibsem/ui/FibsemImageSettingsWidget.py' 2024-01-27T01:40:53,785 adding 'fibsem/ui/FibsemImageViewer.py' 2024-01-27T01:40:53,787 adding 'fibsem/ui/FibsemLabellingUI.py' 2024-01-27T01:40:53,789 adding 'fibsem/ui/FibsemManipulatorWidget.py' 2024-01-27T01:40:53,792 adding 'fibsem/ui/FibsemMicroscopeConfigurationWidget.py' 2024-01-27T01:40:53,796 adding 'fibsem/ui/FibsemMillingWidget.py' 2024-01-27T01:40:53,800 adding 'fibsem/ui/FibsemMinimapWidget.py' 2024-01-27T01:40:53,801 adding 'fibsem/ui/FibsemModelTrainingWidget.py' 2024-01-27T01:40:53,804 adding 'fibsem/ui/FibsemMovementWidget.py' 2024-01-27T01:40:53,805 adding 'fibsem/ui/FibsemMultiChemWidget.py' 2024-01-27T01:40:53,806 adding 'fibsem/ui/FibsemPositionsWidget.py' 2024-01-27T01:40:53,808 adding 'fibsem/ui/FibsemSegmentationModelWidget.py' 2024-01-27T01:40:53,810 adding 'fibsem/ui/FibsemSystemSetupWidget.py' 2024-01-27T01:40:53,812 adding 'fibsem/ui/FibsemUI.py' 2024-01-27T01:40:53,813 adding 'fibsem/ui/__init__.py' 2024-01-27T01:40:53,814 adding 'fibsem/ui/_stylesheets.py' 2024-01-27T01:40:53,817 adding 'fibsem/ui/utils.py' 2024-01-27T01:40:53,819 adding 'fibsem/ui/windows.py' 2024-01-27T01:40:53,821 adding 'fibsem/ui/qtdesigner_files/CurrentAlignmentWidget.py' 2024-01-27T01:40:53,823 adding 'fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py' 2024-01-27T01:40:53,825 adding 'fibsem/ui/qtdesigner_files/FibsemDetectionWidget.py' 2024-01-27T01:40:53,826 adding 'fibsem/ui/qtdesigner_files/FibsemEmbeddedDetectionWidget.py' 2024-01-27T01:40:53,828 adding 'fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py' 2024-01-27T01:40:53,829 adding 'fibsem/ui/qtdesigner_files/FibsemGISWidget.py' 2024-01-27T01:40:53,831 adding 'fibsem/ui/qtdesigner_files/FibsemLabellingUI.py' 2024-01-27T01:40:53,832 adding 'fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py' 2024-01-27T01:40:53,836 adding 'fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py' 2024-01-27T01:40:53,838 adding 'fibsem/ui/qtdesigner_files/FibsemMillingWidget.py' 2024-01-27T01:40:53,840 adding 'fibsem/ui/qtdesigner_files/FibsemMinimapWidget.py' 2024-01-27T01:40:53,842 adding 'fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py' 2024-01-27T01:40:53,844 adding 'fibsem/ui/qtdesigner_files/FibsemMovementWidget.py' 2024-01-27T01:40:53,846 adding 'fibsem/ui/qtdesigner_files/FibsemMultiChemWidget.py' 2024-01-27T01:40:53,847 adding 'fibsem/ui/qtdesigner_files/FibsemPositionsWidget.py' 2024-01-27T01:40:53,848 adding 'fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py' 2024-01-27T01:40:53,850 adding 'fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py' 2024-01-27T01:40:53,851 adding 'fibsem/ui/qtdesigner_files/FibsemUI.py' 2024-01-27T01:40:53,853 adding 'fibsem/ui/qtdesigner_files/ImageSettingsWidget.py' 2024-01-27T01:40:53,855 adding 'fibsem/ui/qtdesigner_files/detection_dialog.py' 2024-01-27T01:40:53,857 adding 'fibsem/ui/qtdesigner_files/image_viewer.py' 2024-01-27T01:40:53,860 adding 'fibsem-0.3.2a1.dist-info/LICENSE' 2024-01-27T01:40:53,862 adding 'fibsem-0.3.2a1.dist-info/METADATA' 2024-01-27T01:40:53,863 adding 'fibsem-0.3.2a1.dist-info/WHEEL' 2024-01-27T01:40:53,864 adding 'fibsem-0.3.2a1.dist-info/entry_points.txt' 2024-01-27T01:40:53,866 adding 'fibsem-0.3.2a1.dist-info/top_level.txt' 2024-01-27T01:40:53,868 adding 'fibsem-0.3.2a1.dist-info/RECORD' 2024-01-27T01:40:53,971 removing build/bdist.linux-armv7l/wheel 2024-01-27T01:40:54,122 Building wheel for fibsem (setup.py): finished with status 'done' 2024-01-27T01:40:54,208 Created wheel for fibsem: filename=fibsem-0.3.2a1-py3-none-any.whl size=8438047 sha256=f5309995df9eadda9e861edc7dd4d07452210426b10d4c4da4c2b405eb8e2ac4 2024-01-27T01:40:54,209 Stored in directory: /tmp/pip-ephem-wheel-cache-_kmmv4h5/wheels/47/78/62/0a05d1d6c6f9c55b822eb821d2521188476262c1ccb8dbcc3e 2024-01-27T01:40:54,228 Successfully built fibsem 2024-01-27T01:40:54,447 Removed build tracker: '/tmp/pip-build-tracker-0mc6e1dk'