2024-02-01T11:46:34,845 Created temporary directory: /tmp/pip-build-tracker-p12eyliq 2024-02-01T11:46:34,847 Initialized build tracking at /tmp/pip-build-tracker-p12eyliq 2024-02-01T11:46:34,847 Created build tracker: /tmp/pip-build-tracker-p12eyliq 2024-02-01T11:46:34,847 Entered build tracker: /tmp/pip-build-tracker-p12eyliq 2024-02-01T11:46:34,848 Created temporary directory: /tmp/pip-wheel-hc_2604z 2024-02-01T11:46:34,851 Created temporary directory: /tmp/pip-ephem-wheel-cache-dqn0o_nb 2024-02-01T11:46:34,873 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-01T11:46:34,876 2 location(s) to search for versions of fibsem: 2024-02-01T11:46:34,876 * https://pypi.org/simple/fibsem/ 2024-02-01T11:46:34,876 * https://www.piwheels.org/simple/fibsem/ 2024-02-01T11:46:34,877 Fetching project page and analyzing links: https://pypi.org/simple/fibsem/ 2024-02-01T11:46:34,878 Getting page https://pypi.org/simple/fibsem/ 2024-02-01T11:46:34,880 Found index url https://pypi.org/simple/ 2024-02-01T11:46:35,095 Fetched page https://pypi.org/simple/fibsem/ as application/vnd.pypi.simple.v1+json 2024-02-01T11:46:35,100 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/4c/cf/0ed2a796e278cf9de3d52e287cc7d8d9892c21c0a00920a9ff30f5033a56/fibsem-0.2.1a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,100 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ad/73/b8cf8db0dba6e191be400b025e534b4f6d7d18c39d86428101720ee58e4e/fibsem-0.2.1a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,101 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/d7/30/b93e42954d23659272a1b8ac6f3dd60da6eff0df55fc4d31bb515f6934eb/fibsem-0.2.2a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,101 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/c8/8f/4bfbe20bfa2ca615b74ad68a1317c1b61df9a93f5f8c9df9e223c9b20623/fibsem-0.2.2a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,102 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/7c/63/681df259de02d04424d8e71530649f0949504d5b31aaf5086651b5804d0c/fibsem-0.2.3a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,103 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/36/98/67400e49fe61d7e9e58d04099a516c039d4493a9ce346276a2cb37774dcd/fibsem-0.2.3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,103 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/39/cc/5b8579067af3dc74509ceaba38d5117cde72f44a85ca8bcc56f5ebee7260/fibsem-0.2.4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,104 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/43/13/625dba2d4741c02a3e6c970399a725b644b9a058dadb2f5fea9e9420b4e3/fibsem-0.2.5-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,105 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/87/1d/1562b356490f6c485f927c52d4b36e774bd5b9588d7a8da4a3dc9432db01/fibsem-0.3.0a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,106 Found link https://files.pythonhosted.org/packages/ad/3e/400c07e0574bbab09f711951db2f6ad3f367a8feff8f6cbafa7af89fd67a/fibsem-0.3.0a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0a0 2024-02-01T11:46:35,106 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/df/fb/4bad22a49352a49befdb7d1513163de5d8d1a4cfb0e60fa3ac4c67f20482/fibsem-0.3.0a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,107 Found link https://files.pythonhosted.org/packages/4e/58/d870caa49f7754b016226db2b7f0ec101164622fc2e82511e7bae7f95af6/fibsem-0.3.0a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0a1 2024-02-01T11:46:35,108 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/05/51/0a0cc14778c2ae7f68a601aa26821327fc35e08bc81546ba6e3d10bc704f/fibsem-0.3.0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,109 Found link https://files.pythonhosted.org/packages/fc/2b/fea39a412194d35634c6d7f2e0768021aa0f024b880a17251a3f377e1c5c/fibsem-0.3.0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0 2024-02-01T11:46:35,109 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/32/8b/d53be8a146bfa866e850b13e6b80977d4c1bc527852fc4d0c0cfe0b6fc56/fibsem-0.3.1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,110 Found link https://files.pythonhosted.org/packages/52/84/03322d031fa283e8c468f6e706d59b3efe59dbb4e2341ffa012c5f68c127/fibsem-0.3.1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.1 2024-02-01T11:46:35,111 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/07/65/22b4f873c57c647b123c552214de8f533f12706e6ff2b419f08b02c6f421/fibsem-0.3.2a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,112 Found link https://files.pythonhosted.org/packages/78/de/5da6cf780c6ae414322a1fd3ae2f80223b2ab197b5045886658688b67986/fibsem-0.3.2a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.2a1 2024-02-01T11:46:35,112 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/f1/9d/ddd526104faf19ad44ad941b136dc14a30e289abdfdffba15bc11d34580d/fibsem-0.3.2-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,113 Found link https://files.pythonhosted.org/packages/ef/10/13c01c548f92955d5069ea9caebdd1023f876a338bc336ac42356f609ee3/fibsem-0.3.2.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.2 2024-02-01T11:46:35,114 Fetching project page and analyzing links: https://www.piwheels.org/simple/fibsem/ 2024-02-01T11:46:35,115 Getting page https://www.piwheels.org/simple/fibsem/ 2024-02-01T11:46:35,116 Found index url https://www.piwheels.org/simple/ 2024-02-01T11:46:35,269 Fetched page https://www.piwheels.org/simple/fibsem/ as text/html 2024-02-01T11:46:35,271 Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.3.2a1-py3-none-any.whl#sha256=f5309995df9eadda9e861edc7dd4d07452210426b10d4c4da4c2b405eb8e2ac4 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,272 Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.3.1-py3-none-any.whl#sha256=72ca906da40a31401ad7636438566ad77e6d6ef434c85d4517c7411645c41027 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,273 Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.3.0-py3-none-any.whl#sha256=61d366cbae13eecb465c904050eba503bb875f93c6e743eedcfae3ca9cf5e2ac (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,273 Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.3.0a1-py3-none-any.whl#sha256=21ae6ee6be3ad2f8832a6d457a20aea2627a25340a672d8a42f9f0488d8a710c (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,274 Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.3.0a0-py3-none-any.whl#sha256=4e29ec9054961edc9242d2cb332c01000bcb0574069ad23261e41ac7f1489a4f (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2024-02-01T11:46:35,275 Skipping link: not a file: https://www.piwheels.org/simple/fibsem/ 2024-02-01T11:46:35,275 Skipping link: not a file: https://pypi.org/simple/fibsem/ 2024-02-01T11:46:35,295 Given no hashes to check 1 links for project 'fibsem': discarding no candidates 2024-02-01T11:46:35,315 Collecting fibsem==0.3.2 2024-02-01T11:46:35,317 Created temporary directory: /tmp/pip-unpack-r_tcmolj 2024-02-01T11:46:35,803 Downloading fibsem-0.3.2.tar.gz (8.4 MB) 2024-02-01T11:46:38,600 Added fibsem==0.3.2 from https://files.pythonhosted.org/packages/ef/10/13c01c548f92955d5069ea9caebdd1023f876a338bc336ac42356f609ee3/fibsem-0.3.2.tar.gz to build tracker '/tmp/pip-build-tracker-p12eyliq' 2024-02-01T11:46:38,601 Running setup.py (path:/tmp/pip-wheel-hc_2604z/fibsem_dca05c182bf34154bda139318aee073d/setup.py) egg_info for package fibsem 2024-02-01T11:46:38,602 Created temporary directory: /tmp/pip-pip-egg-info-s9cw5ncy 2024-02-01T11:46:38,602 Preparing metadata (setup.py): started 2024-02-01T11:46:38,604 Running command python setup.py egg_info 2024-02-01T11:46:39,760 running egg_info 2024-02-01T11:46:39,761 creating /tmp/pip-pip-egg-info-s9cw5ncy/fibsem.egg-info 2024-02-01T11:46:39,795 writing /tmp/pip-pip-egg-info-s9cw5ncy/fibsem.egg-info/PKG-INFO 2024-02-01T11:46:39,799 writing dependency_links to /tmp/pip-pip-egg-info-s9cw5ncy/fibsem.egg-info/dependency_links.txt 2024-02-01T11:46:39,801 writing entry points to /tmp/pip-pip-egg-info-s9cw5ncy/fibsem.egg-info/entry_points.txt 2024-02-01T11:46:39,803 writing requirements to /tmp/pip-pip-egg-info-s9cw5ncy/fibsem.egg-info/requires.txt 2024-02-01T11:46:39,804 writing top-level names to /tmp/pip-pip-egg-info-s9cw5ncy/fibsem.egg-info/top_level.txt 2024-02-01T11:46:39,806 writing manifest file '/tmp/pip-pip-egg-info-s9cw5ncy/fibsem.egg-info/SOURCES.txt' 2024-02-01T11:46:39,920 reading manifest file '/tmp/pip-pip-egg-info-s9cw5ncy/fibsem.egg-info/SOURCES.txt' 2024-02-01T11:46:39,922 reading manifest template 'MANIFEST.in' 2024-02-01T11:46:39,923 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-02-01T11:46:39,924 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-02-01T11:46:39,925 warning: no previously-included files matching '*.ui' found under directory '*' 2024-02-01T11:46:39,926 adding license file 'LICENSE' 2024-02-01T11:46:39,929 writing manifest file '/tmp/pip-pip-egg-info-s9cw5ncy/fibsem.egg-info/SOURCES.txt' 2024-02-01T11:46:40,037 Preparing metadata (setup.py): finished with status 'done' 2024-02-01T11:46:40,041 Source in /tmp/pip-wheel-hc_2604z/fibsem_dca05c182bf34154bda139318aee073d has version 0.3.2, which satisfies requirement fibsem==0.3.2 from https://files.pythonhosted.org/packages/ef/10/13c01c548f92955d5069ea9caebdd1023f876a338bc336ac42356f609ee3/fibsem-0.3.2.tar.gz 2024-02-01T11:46:40,042 Removed fibsem==0.3.2 from https://files.pythonhosted.org/packages/ef/10/13c01c548f92955d5069ea9caebdd1023f876a338bc336ac42356f609ee3/fibsem-0.3.2.tar.gz from build tracker '/tmp/pip-build-tracker-p12eyliq' 2024-02-01T11:46:40,049 Created temporary directory: /tmp/pip-unpack-0ih9q63l 2024-02-01T11:46:40,050 Created temporary directory: /tmp/pip-unpack-5k9_8kkl 2024-02-01T11:46:40,078 Building wheels for collected packages: fibsem 2024-02-01T11:46:40,082 Created temporary directory: /tmp/pip-wheel-_rq7itkm 2024-02-01T11:46:40,083 Building wheel for fibsem (setup.py): started 2024-02-01T11:46:40,084 Destination directory: /tmp/pip-wheel-_rq7itkm 2024-02-01T11:46:40,085 Running command python setup.py bdist_wheel 2024-02-01T11:46:41,232 running bdist_wheel 2024-02-01T11:46:41,364 running build 2024-02-01T11:46:41,365 running build_py 2024-02-01T11:46:41,401 creating build 2024-02-01T11:46:41,401 creating build/lib 2024-02-01T11:46:41,402 creating build/lib/fibsem 2024-02-01T11:46:41,403 copying fibsem/config.py -> build/lib/fibsem 2024-02-01T11:46:41,406 copying fibsem/configuration.py -> build/lib/fibsem 2024-02-01T11:46:41,408 copying fibsem/conversions.py -> build/lib/fibsem 2024-02-01T11:46:41,410 copying fibsem/calibration.py -> build/lib/fibsem 2024-02-01T11:46:41,412 copying fibsem/movement.py -> build/lib/fibsem 2024-02-01T11:46:41,413 copying fibsem/alignment.py -> build/lib/fibsem 2024-02-01T11:46:41,416 copying fibsem/acquire.py -> build/lib/fibsem 2024-02-01T11:46:41,418 copying fibsem/gis.py -> build/lib/fibsem 2024-02-01T11:46:41,420 copying fibsem/structures.py -> build/lib/fibsem 2024-02-01T11:46:41,423 copying fibsem/microscope.py -> build/lib/fibsem 2024-02-01T11:46:41,428 copying fibsem/__init__.py -> build/lib/fibsem 2024-02-01T11:46:41,429 copying fibsem/validation.py -> build/lib/fibsem 2024-02-01T11:46:41,432 copying fibsem/milling.py -> build/lib/fibsem 2024-02-01T11:46:41,433 copying fibsem/utils.py -> build/lib/fibsem 2024-02-01T11:46:41,436 copying fibsem/constants.py -> build/lib/fibsem 2024-02-01T11:46:41,437 copying fibsem/_version.py -> build/lib/fibsem 2024-02-01T11:46:41,439 copying fibsem/patterning.py -> build/lib/fibsem 2024-02-01T11:46:41,442 creating build/lib/fibsem/segmentation 2024-02-01T11:46:41,443 copying fibsem/segmentation/config.py -> build/lib/fibsem/segmentation 2024-02-01T11:46:41,445 copying fibsem/segmentation/_nnunet.py -> build/lib/fibsem/segmentation 2024-02-01T11:46:41,447 copying fibsem/segmentation/dataset.py -> build/lib/fibsem/segmentation 2024-02-01T11:46:41,449 copying fibsem/segmentation/model.py -> build/lib/fibsem/segmentation 2024-02-01T11:46:41,451 copying fibsem/segmentation/__init__.py -> build/lib/fibsem/segmentation 2024-02-01T11:46:41,452 copying fibsem/segmentation/sam_model.py -> build/lib/fibsem/segmentation 2024-02-01T11:46:41,454 copying fibsem/segmentation/utils.py -> build/lib/fibsem/segmentation 2024-02-01T11:46:41,456 copying fibsem/segmentation/inference.py -> build/lib/fibsem/segmentation 2024-02-01T11:46:41,458 copying fibsem/segmentation/train.py -> build/lib/fibsem/segmentation 2024-02-01T11:46:41,460 copying fibsem/segmentation/onnx_model.py -> build/lib/fibsem/segmentation 2024-02-01T11:46:41,462 copying fibsem/segmentation/nnunet_model.py -> build/lib/fibsem/segmentation 2024-02-01T11:46:41,464 creating build/lib/fibsem/imaging 2024-02-01T11:46:41,465 copying fibsem/imaging/_tile.py -> build/lib/fibsem/imaging 2024-02-01T11:46:41,467 copying fibsem/imaging/masks.py -> build/lib/fibsem/imaging 2024-02-01T11:46:41,469 copying fibsem/imaging/autogamma.py -> build/lib/fibsem/imaging 2024-02-01T11:46:41,471 copying fibsem/imaging/__init__.py -> build/lib/fibsem/imaging 2024-02-01T11:46:41,472 copying fibsem/imaging/utils.py -> build/lib/fibsem/imaging 2024-02-01T11:46:41,475 creating build/lib/fibsem/ui 2024-02-01T11:46:41,476 copying fibsem/ui/FibsemLabellingUI.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,479 copying fibsem/ui/FibsemMultiChemWidget.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,481 copying fibsem/ui/FibsemAlignmentWidget.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,483 copying fibsem/ui/_stylesheets.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,485 copying fibsem/ui/FibsemFeatureLabellingUI.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,487 copying fibsem/ui/FibsemImageSettingsWidget.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,489 copying fibsem/ui/FibsemMillingWidget.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,492 copying fibsem/ui/FibsemCryoDepositionWidget.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,494 copying fibsem/ui/FibsemMovementWidget.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,496 copying fibsem/ui/windows.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,498 copying fibsem/ui/FibsemSystemSetupWidget.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,500 copying fibsem/ui/FibsemDetectionWidget.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,503 copying fibsem/ui/FibsemModelTrainingWidget.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,505 copying fibsem/ui/FibsemImageViewer.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,507 copying fibsem/ui/FibsemGISWidget.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,509 copying fibsem/ui/FibsemEmbeddedDetectionWidget.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,511 copying fibsem/ui/FibsemUI.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,513 copying fibsem/ui/__init__.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,515 copying fibsem/ui/FibsemDetectionUI.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,517 copying fibsem/ui/FibsemPositionsWidget.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,519 copying fibsem/ui/utils.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,521 copying fibsem/ui/FibsemMinimapWidget.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,524 copying fibsem/ui/FibsemCryoDepositionWidget_qt.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,526 copying fibsem/ui/FibsemSegmentationModelWidget.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,527 copying fibsem/ui/FibsemManipulatorWidget.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,530 copying fibsem/ui/FibsemMicroscopeConfigurationWidget.py -> build/lib/fibsem/ui 2024-02-01T11:46:41,532 creating build/lib/fibsem/detection 2024-02-01T11:46:41,533 copying fibsem/detection/evaluation.py -> build/lib/fibsem/detection 2024-02-01T11:46:41,536 copying fibsem/detection/detection.py -> build/lib/fibsem/detection 2024-02-01T11:46:41,538 copying fibsem/detection/__init__.py -> build/lib/fibsem/detection 2024-02-01T11:46:41,539 copying fibsem/detection/utils.py -> build/lib/fibsem/detection 2024-02-01T11:46:41,541 copying fibsem/detection/run_evaluation.py -> build/lib/fibsem/detection 2024-02-01T11:46:41,543 running egg_info 2024-02-01T11:46:41,620 writing fibsem.egg-info/PKG-INFO 2024-02-01T11:46:41,624 writing dependency_links to fibsem.egg-info/dependency_links.txt 2024-02-01T11:46:41,626 writing entry points to fibsem.egg-info/entry_points.txt 2024-02-01T11:46:41,627 writing requirements to fibsem.egg-info/requires.txt 2024-02-01T11:46:41,628 writing top-level names to fibsem.egg-info/top_level.txt 2024-02-01T11:46:41,674 reading manifest file 'fibsem.egg-info/SOURCES.txt' 2024-02-01T11:46:41,689 reading manifest template 'MANIFEST.in' 2024-02-01T11:46:41,691 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-02-01T11:46:41,692 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-02-01T11:46:41,693 warning: no previously-included files matching '*.ui' found under directory '*' 2024-02-01T11:46:41,694 adding license file 'LICENSE' 2024-02-01T11:46:41,700 writing manifest file 'fibsem.egg-info/SOURCES.txt' 2024-02-01T11:46:41,703 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.chat' is absent from the `packages` configuration. 2024-02-01T11:46:41,704 !! 2024-02-01T11:46:41,705 ******************************************************************************** 2024-02-01T11:46:41,705 ############################ 2024-02-01T11:46:41,706 # Package would be ignored # 2024-02-01T11:46:41,707 ############################ 2024-02-01T11:46:41,707 Python recognizes 'fibsem.chat' as an importable package[^1], 2024-02-01T11:46:41,708 but it is absent from setuptools' `packages` configuration. 2024-02-01T11:46:41,709 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T11:46:41,709 package, please make sure that 'fibsem.chat' is explicitly added 2024-02-01T11:46:41,710 to the `packages` configuration field. 2024-02-01T11:46:41,711 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T11:46:41,711 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T11:46:41,712 instead of `find_packages(...)`/`find:`). 2024-02-01T11:46:41,713 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T11:46:41,714 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T11:46:41,715 If you don't want 'fibsem.chat' to be distributed and are 2024-02-01T11:46:41,716 already explicitly excluding 'fibsem.chat' via 2024-02-01T11:46:41,716 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T11:46:41,717 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T11:46:41,717 combination with a more fine grained `package-data` configuration. 2024-02-01T11:46:41,718 You can read more about "package data files" on setuptools documentation page: 2024-02-01T11:46:41,719 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T11:46:41,720 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T11:46:41,721 even if it does not contain any `.py` files. 2024-02-01T11:46:41,721 On the other hand, currently there is no concept of package data 2024-02-01T11:46:41,721 directory, all directories are treated like packages. 2024-02-01T11:46:41,722 ******************************************************************************** 2024-02-01T11:46:41,723 !! 2024-02-01T11:46:41,723 check.warn(importable) 2024-02-01T11:46:41,724 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.config' is absent from the `packages` configuration. 2024-02-01T11:46:41,724 !! 2024-02-01T11:46:41,725 ******************************************************************************** 2024-02-01T11:46:41,725 ############################ 2024-02-01T11:46:41,726 # Package would be ignored # 2024-02-01T11:46:41,726 ############################ 2024-02-01T11:46:41,727 Python recognizes 'fibsem.config' as an importable package[^1], 2024-02-01T11:46:41,727 but it is absent from setuptools' `packages` configuration. 2024-02-01T11:46:41,728 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T11:46:41,729 package, please make sure that 'fibsem.config' is explicitly added 2024-02-01T11:46:41,729 to the `packages` configuration field. 2024-02-01T11:46:41,730 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T11:46:41,731 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T11:46:41,731 instead of `find_packages(...)`/`find:`). 2024-02-01T11:46:41,732 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T11:46:41,734 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T11:46:41,735 If you don't want 'fibsem.config' to be distributed and are 2024-02-01T11:46:41,735 already explicitly excluding 'fibsem.config' via 2024-02-01T11:46:41,736 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T11:46:41,736 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T11:46:41,736 combination with a more fine grained `package-data` configuration. 2024-02-01T11:46:41,737 You can read more about "package data files" on setuptools documentation page: 2024-02-01T11:46:41,739 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T11:46:41,740 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T11:46:41,741 even if it does not contain any `.py` files. 2024-02-01T11:46:41,741 On the other hand, currently there is no concept of package data 2024-02-01T11:46:41,742 directory, all directories are treated like packages. 2024-02-01T11:46:41,742 ******************************************************************************** 2024-02-01T11:46:41,743 !! 2024-02-01T11:46:41,744 check.warn(importable) 2024-02-01T11:46:41,744 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.db' is absent from the `packages` configuration. 2024-02-01T11:46:41,745 !! 2024-02-01T11:46:41,745 ******************************************************************************** 2024-02-01T11:46:41,746 ############################ 2024-02-01T11:46:41,746 # Package would be ignored # 2024-02-01T11:46:41,747 ############################ 2024-02-01T11:46:41,747 Python recognizes 'fibsem.db' as an importable package[^1], 2024-02-01T11:46:41,747 but it is absent from setuptools' `packages` configuration. 2024-02-01T11:46:41,748 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T11:46:41,749 package, please make sure that 'fibsem.db' is explicitly added 2024-02-01T11:46:41,749 to the `packages` configuration field. 2024-02-01T11:46:41,750 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T11:46:41,750 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T11:46:41,751 instead of `find_packages(...)`/`find:`). 2024-02-01T11:46:41,752 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T11:46:41,753 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T11:46:41,754 If you don't want 'fibsem.db' to be distributed and are 2024-02-01T11:46:41,754 already explicitly excluding 'fibsem.db' via 2024-02-01T11:46:41,755 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T11:46:41,756 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T11:46:41,756 combination with a more fine grained `package-data` configuration. 2024-02-01T11:46:41,757 You can read more about "package data files" on setuptools documentation page: 2024-02-01T11:46:41,758 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T11:46:41,760 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T11:46:41,760 even if it does not contain any `.py` files. 2024-02-01T11:46:41,761 On the other hand, currently there is no concept of package data 2024-02-01T11:46:41,761 directory, all directories are treated like packages. 2024-02-01T11:46:41,762 ******************************************************************************** 2024-02-01T11:46:41,763 !! 2024-02-01T11:46:41,763 check.warn(importable) 2024-02-01T11:46:41,764 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.detection.test_images' is absent from the `packages` configuration. 2024-02-01T11:46:41,764 !! 2024-02-01T11:46:41,765 ******************************************************************************** 2024-02-01T11:46:41,766 ############################ 2024-02-01T11:46:41,766 # Package would be ignored # 2024-02-01T11:46:41,767 ############################ 2024-02-01T11:46:41,767 Python recognizes 'fibsem.detection.test_images' as an importable package[^1], 2024-02-01T11:46:41,768 but it is absent from setuptools' `packages` configuration. 2024-02-01T11:46:41,769 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T11:46:41,769 package, please make sure that 'fibsem.detection.test_images' is explicitly added 2024-02-01T11:46:41,770 to the `packages` configuration field. 2024-02-01T11:46:41,771 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T11:46:41,771 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T11:46:41,772 instead of `find_packages(...)`/`find:`). 2024-02-01T11:46:41,773 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T11:46:41,774 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T11:46:41,774 If you don't want 'fibsem.detection.test_images' to be distributed and are 2024-02-01T11:46:41,775 already explicitly excluding 'fibsem.detection.test_images' via 2024-02-01T11:46:41,775 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T11:46:41,776 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T11:46:41,776 combination with a more fine grained `package-data` configuration. 2024-02-01T11:46:41,777 You can read more about "package data files" on setuptools documentation page: 2024-02-01T11:46:41,778 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T11:46:41,779 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T11:46:41,779 even if it does not contain any `.py` files. 2024-02-01T11:46:41,780 On the other hand, currently there is no concept of package data 2024-02-01T11:46:41,780 directory, all directories are treated like packages. 2024-02-01T11:46:41,781 ******************************************************************************** 2024-02-01T11:46:41,781 !! 2024-02-01T11:46:41,782 check.warn(importable) 2024-02-01T11:46:41,782 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.detection.test_images.serial' is absent from the `packages` configuration. 2024-02-01T11:46:41,783 !! 2024-02-01T11:46:41,784 ******************************************************************************** 2024-02-01T11:46:41,784 ############################ 2024-02-01T11:46:41,785 # Package would be ignored # 2024-02-01T11:46:41,785 ############################ 2024-02-01T11:46:41,785 Python recognizes 'fibsem.detection.test_images.serial' as an importable package[^1], 2024-02-01T11:46:41,786 but it is absent from setuptools' `packages` configuration. 2024-02-01T11:46:41,787 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T11:46:41,787 package, please make sure that 'fibsem.detection.test_images.serial' is explicitly added 2024-02-01T11:46:41,788 to the `packages` configuration field. 2024-02-01T11:46:41,789 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T11:46:41,790 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T11:46:41,790 instead of `find_packages(...)`/`find:`). 2024-02-01T11:46:41,791 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T11:46:41,792 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T11:46:41,793 If you don't want 'fibsem.detection.test_images.serial' to be distributed and are 2024-02-01T11:46:41,793 already explicitly excluding 'fibsem.detection.test_images.serial' via 2024-02-01T11:46:41,794 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T11:46:41,794 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T11:46:41,795 combination with a more fine grained `package-data` configuration. 2024-02-01T11:46:41,796 You can read more about "package data files" on setuptools documentation page: 2024-02-01T11:46:41,797 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T11:46:41,799 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T11:46:41,799 even if it does not contain any `.py` files. 2024-02-01T11:46:41,800 On the other hand, currently there is no concept of package data 2024-02-01T11:46:41,801 directory, all directories are treated like packages. 2024-02-01T11:46:41,802 ******************************************************************************** 2024-02-01T11:46:41,803 !! 2024-02-01T11:46:41,803 check.warn(importable) 2024-02-01T11:46:41,803 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.segmentation.docs' is absent from the `packages` configuration. 2024-02-01T11:46:41,804 !! 2024-02-01T11:46:41,805 ******************************************************************************** 2024-02-01T11:46:41,805 ############################ 2024-02-01T11:46:41,806 # Package would be ignored # 2024-02-01T11:46:41,806 ############################ 2024-02-01T11:46:41,807 Python recognizes 'fibsem.segmentation.docs' as an importable package[^1], 2024-02-01T11:46:41,807 but it is absent from setuptools' `packages` configuration. 2024-02-01T11:46:41,808 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T11:46:41,809 package, please make sure that 'fibsem.segmentation.docs' is explicitly added 2024-02-01T11:46:41,809 to the `packages` configuration field. 2024-02-01T11:46:41,810 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T11:46:41,811 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T11:46:41,812 instead of `find_packages(...)`/`find:`). 2024-02-01T11:46:41,813 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T11:46:41,814 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T11:46:41,815 If you don't want 'fibsem.segmentation.docs' to be distributed and are 2024-02-01T11:46:41,815 already explicitly excluding 'fibsem.segmentation.docs' via 2024-02-01T11:46:41,816 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T11:46:41,816 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T11:46:41,817 combination with a more fine grained `package-data` configuration. 2024-02-01T11:46:41,818 You can read more about "package data files" on setuptools documentation page: 2024-02-01T11:46:41,820 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T11:46:41,821 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T11:46:41,822 even if it does not contain any `.py` files. 2024-02-01T11:46:41,822 On the other hand, currently there is no concept of package data 2024-02-01T11:46:41,823 directory, all directories are treated like packages. 2024-02-01T11:46:41,824 ******************************************************************************** 2024-02-01T11:46:41,825 !! 2024-02-01T11:46:41,828 check.warn(importable) 2024-02-01T11:46:41,830 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.segmentation.docs.imgs.combined' is absent from the `packages` configuration. 2024-02-01T11:46:41,832 !! 2024-02-01T11:46:41,833 ******************************************************************************** 2024-02-01T11:46:41,834 ############################ 2024-02-01T11:46:41,834 # Package would be ignored # 2024-02-01T11:46:41,835 ############################ 2024-02-01T11:46:41,836 Python recognizes 'fibsem.segmentation.docs.imgs.combined' as an importable package[^1], 2024-02-01T11:46:41,837 but it is absent from setuptools' `packages` configuration. 2024-02-01T11:46:41,842 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T11:46:41,843 package, please make sure that 'fibsem.segmentation.docs.imgs.combined' is explicitly added 2024-02-01T11:46:41,844 to the `packages` configuration field. 2024-02-01T11:46:41,845 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T11:46:41,846 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T11:46:41,847 instead of `find_packages(...)`/`find:`). 2024-02-01T11:46:41,847 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T11:46:41,848 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T11:46:41,849 If you don't want 'fibsem.segmentation.docs.imgs.combined' to be distributed and are 2024-02-01T11:46:41,857 already explicitly excluding 'fibsem.segmentation.docs.imgs.combined' via 2024-02-01T11:46:41,870 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T11:46:41,881 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T11:46:41,883 combination with a more fine grained `package-data` configuration. 2024-02-01T11:46:41,884 You can read more about "package data files" on setuptools documentation page: 2024-02-01T11:46:41,885 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T11:46:41,888 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T11:46:41,889 even if it does not contain any `.py` files. 2024-02-01T11:46:41,889 On the other hand, currently there is no concept of package data 2024-02-01T11:46:41,890 directory, all directories are treated like packages. 2024-02-01T11:46:41,891 ******************************************************************************** 2024-02-01T11:46:41,901 !! 2024-02-01T11:46:41,907 check.warn(importable) 2024-02-01T11:46:41,908 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.segmentation.docs.imgs.labelled' is absent from the `packages` configuration. 2024-02-01T11:46:41,909 !! 2024-02-01T11:46:41,910 ******************************************************************************** 2024-02-01T11:46:41,910 ############################ 2024-02-01T11:46:41,911 # Package would be ignored # 2024-02-01T11:46:41,911 ############################ 2024-02-01T11:46:41,912 Python recognizes 'fibsem.segmentation.docs.imgs.labelled' as an importable package[^1], 2024-02-01T11:46:41,912 but it is absent from setuptools' `packages` configuration. 2024-02-01T11:46:41,914 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T11:46:41,914 package, please make sure that 'fibsem.segmentation.docs.imgs.labelled' is explicitly added 2024-02-01T11:46:41,915 to the `packages` configuration field. 2024-02-01T11:46:41,916 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T11:46:41,916 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T11:46:41,917 instead of `find_packages(...)`/`find:`). 2024-02-01T11:46:41,918 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T11:46:41,919 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T11:46:41,921 If you don't want 'fibsem.segmentation.docs.imgs.labelled' to be distributed and are 2024-02-01T11:46:41,922 already explicitly excluding 'fibsem.segmentation.docs.imgs.labelled' via 2024-02-01T11:46:41,923 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T11:46:41,926 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T11:46:41,931 combination with a more fine grained `package-data` configuration. 2024-02-01T11:46:41,939 You can read more about "package data files" on setuptools documentation page: 2024-02-01T11:46:41,940 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T11:46:41,941 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T11:46:41,942 even if it does not contain any `.py` files. 2024-02-01T11:46:41,942 On the other hand, currently there is no concept of package data 2024-02-01T11:46:41,943 directory, all directories are treated like packages. 2024-02-01T11:46:41,943 ******************************************************************************** 2024-02-01T11:46:41,944 !! 2024-02-01T11:46:41,945 check.warn(importable) 2024-02-01T11:46:41,945 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.segmentation.docs.imgs.raw' is absent from the `packages` configuration. 2024-02-01T11:46:41,945 !! 2024-02-01T11:46:41,946 ******************************************************************************** 2024-02-01T11:46:41,947 ############################ 2024-02-01T11:46:41,947 # Package would be ignored # 2024-02-01T11:46:41,948 ############################ 2024-02-01T11:46:41,948 Python recognizes 'fibsem.segmentation.docs.imgs.raw' as an importable package[^1], 2024-02-01T11:46:41,948 but it is absent from setuptools' `packages` configuration. 2024-02-01T11:46:41,955 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T11:46:41,957 package, please make sure that 'fibsem.segmentation.docs.imgs.raw' is explicitly added 2024-02-01T11:46:41,960 to the `packages` configuration field. 2024-02-01T11:46:41,965 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T11:46:41,965 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T11:46:41,966 instead of `find_packages(...)`/`find:`). 2024-02-01T11:46:41,967 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T11:46:41,968 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T11:46:41,969 If you don't want 'fibsem.segmentation.docs.imgs.raw' to be distributed and are 2024-02-01T11:46:41,969 already explicitly excluding 'fibsem.segmentation.docs.imgs.raw' via 2024-02-01T11:46:41,970 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T11:46:41,970 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T11:46:41,971 combination with a more fine grained `package-data` configuration. 2024-02-01T11:46:41,972 You can read more about "package data files" on setuptools documentation page: 2024-02-01T11:46:41,973 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T11:46:41,975 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T11:46:41,975 even if it does not contain any `.py` files. 2024-02-01T11:46:41,976 On the other hand, currently there is no concept of package data 2024-02-01T11:46:41,976 directory, all directories are treated like packages. 2024-02-01T11:46:41,977 ******************************************************************************** 2024-02-01T11:46:41,978 !! 2024-02-01T11:46:41,978 check.warn(importable) 2024-02-01T11:46:41,979 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.segmentation.models' is absent from the `packages` configuration. 2024-02-01T11:46:41,979 !! 2024-02-01T11:46:41,981 ******************************************************************************** 2024-02-01T11:46:41,981 ############################ 2024-02-01T11:46:41,982 # Package would be ignored # 2024-02-01T11:46:41,982 ############################ 2024-02-01T11:46:41,983 Python recognizes 'fibsem.segmentation.models' as an importable package[^1], 2024-02-01T11:46:41,983 but it is absent from setuptools' `packages` configuration. 2024-02-01T11:46:41,984 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T11:46:41,985 package, please make sure that 'fibsem.segmentation.models' is explicitly added 2024-02-01T11:46:41,985 to the `packages` configuration field. 2024-02-01T11:46:41,986 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T11:46:41,987 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T11:46:41,987 instead of `find_packages(...)`/`find:`). 2024-02-01T11:46:41,988 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T11:46:41,989 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T11:46:41,990 If you don't want 'fibsem.segmentation.models' to be distributed and are 2024-02-01T11:46:41,991 already explicitly excluding 'fibsem.segmentation.models' via 2024-02-01T11:46:41,991 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T11:46:41,992 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T11:46:41,992 combination with a more fine grained `package-data` configuration. 2024-02-01T11:46:41,993 You can read more about "package data files" on setuptools documentation page: 2024-02-01T11:46:41,994 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T11:46:41,996 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T11:46:41,996 even if it does not contain any `.py` files. 2024-02-01T11:46:41,997 On the other hand, currently there is no concept of package data 2024-02-01T11:46:41,997 directory, all directories are treated like packages. 2024-02-01T11:46:41,998 ******************************************************************************** 2024-02-01T11:46:41,999 !! 2024-02-01T11:46:42,000 check.warn(importable) 2024-02-01T11:46:42,000 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.tools' is absent from the `packages` configuration. 2024-02-01T11:46:42,001 !! 2024-02-01T11:46:42,002 ******************************************************************************** 2024-02-01T11:46:42,002 ############################ 2024-02-01T11:46:42,003 # Package would be ignored # 2024-02-01T11:46:42,003 ############################ 2024-02-01T11:46:42,004 Python recognizes 'fibsem.tools' as an importable package[^1], 2024-02-01T11:46:42,005 but it is absent from setuptools' `packages` configuration. 2024-02-01T11:46:42,006 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T11:46:42,006 package, please make sure that 'fibsem.tools' is explicitly added 2024-02-01T11:46:42,007 to the `packages` configuration field. 2024-02-01T11:46:42,008 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T11:46:42,008 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T11:46:42,009 instead of `find_packages(...)`/`find:`). 2024-02-01T11:46:42,010 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T11:46:42,011 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T11:46:42,012 If you don't want 'fibsem.tools' to be distributed and are 2024-02-01T11:46:42,013 already explicitly excluding 'fibsem.tools' via 2024-02-01T11:46:42,013 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T11:46:42,014 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T11:46:42,014 combination with a more fine grained `package-data` configuration. 2024-02-01T11:46:42,015 You can read more about "package data files" on setuptools documentation page: 2024-02-01T11:46:42,016 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T11:46:42,017 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T11:46:42,018 even if it does not contain any `.py` files. 2024-02-01T11:46:42,018 On the other hand, currently there is no concept of package data 2024-02-01T11:46:42,019 directory, all directories are treated like packages. 2024-02-01T11:46:42,019 ******************************************************************************** 2024-02-01T11:46:42,020 !! 2024-02-01T11:46:42,021 check.warn(importable) 2024-02-01T11:46:42,021 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.ui.qtdesigner_files' is absent from the `packages` configuration. 2024-02-01T11:46:42,022 !! 2024-02-01T11:46:42,023 ******************************************************************************** 2024-02-01T11:46:42,023 ############################ 2024-02-01T11:46:42,023 # Package would be ignored # 2024-02-01T11:46:42,024 ############################ 2024-02-01T11:46:42,025 Python recognizes 'fibsem.ui.qtdesigner_files' as an importable package[^1], 2024-02-01T11:46:42,025 but it is absent from setuptools' `packages` configuration. 2024-02-01T11:46:42,026 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-01T11:46:42,027 package, please make sure that 'fibsem.ui.qtdesigner_files' is explicitly added 2024-02-01T11:46:42,027 to the `packages` configuration field. 2024-02-01T11:46:42,028 Alternatively, you can also rely on setuptools' discovery methods 2024-02-01T11:46:42,029 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-01T11:46:42,029 instead of `find_packages(...)`/`find:`). 2024-02-01T11:46:42,030 You can read more about "package discovery" on setuptools documentation page: 2024-02-01T11:46:42,031 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-01T11:46:42,032 If you don't want 'fibsem.ui.qtdesigner_files' to be distributed and are 2024-02-01T11:46:42,033 already explicitly excluding 'fibsem.ui.qtdesigner_files' via 2024-02-01T11:46:42,034 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-01T11:46:42,034 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-01T11:46:42,035 combination with a more fine grained `package-data` configuration. 2024-02-01T11:46:42,036 You can read more about "package data files" on setuptools documentation page: 2024-02-01T11:46:42,037 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-01T11:46:42,038 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-01T11:46:42,039 even if it does not contain any `.py` files. 2024-02-01T11:46:42,039 On the other hand, currently there is no concept of package data 2024-02-01T11:46:42,040 directory, all directories are treated like packages. 2024-02-01T11:46:42,040 ******************************************************************************** 2024-02-01T11:46:42,042 !! 2024-02-01T11:46:42,042 check.warn(importable) 2024-02-01T11:46:42,043 creating build/lib/fibsem/chat 2024-02-01T11:46:42,043 copying fibsem/chat/.gitignore -> build/lib/fibsem/chat 2024-02-01T11:46:42,043 copying fibsem/chat/main.py -> build/lib/fibsem/chat 2024-02-01T11:46:42,044 copying fibsem/chat/requirements.txt -> build/lib/fibsem/chat 2024-02-01T11:46:42,044 creating build/lib/fibsem/config 2024-02-01T11:46:42,045 copying fibsem/config/deposition.dbp -> build/lib/fibsem/config 2024-02-01T11:46:42,045 copying fibsem/config/microscope-configuration.yaml -> build/lib/fibsem/config 2024-02-01T11:46:42,045 copying fibsem/config/positions.yaml -> build/lib/fibsem/config 2024-02-01T11:46:42,046 copying fibsem/config/protocol.yaml -> build/lib/fibsem/config 2024-02-01T11:46:42,046 copying fibsem/config/system.yaml -> build/lib/fibsem/config 2024-02-01T11:46:42,047 copying fibsem/config/user-configurations.yaml -> build/lib/fibsem/config 2024-02-01T11:46:42,047 creating build/lib/fibsem/db 2024-02-01T11:46:42,047 copying fibsem/db/app.py -> build/lib/fibsem/db 2024-02-01T11:46:42,048 copying fibsem/db/config.yaml -> build/lib/fibsem/db 2024-02-01T11:46:42,048 copying fibsem/db/notebook.ipynb -> build/lib/fibsem/db 2024-02-01T11:46:42,049 copying fibsem/db/util.py -> build/lib/fibsem/db 2024-02-01T11:46:42,049 creating build/lib/fibsem/tools 2024-02-01T11:46:42,050 copying fibsem/tools/_parser.py -> build/lib/fibsem/tools 2024-02-01T11:46:42,050 copying fibsem/tools/run_manipulator_calibration.py -> build/lib/fibsem/tools 2024-02-01T11:46:42,051 copying fibsem/tools/run_split_dataset.py -> build/lib/fibsem/tools 2024-02-01T11:46:42,051 copying fibsem/tools/telemetry.py -> build/lib/fibsem/tools 2024-02-01T11:46:42,051 copying fibsem/segmentation/README.md -> build/lib/fibsem/segmentation 2024-02-01T11:46:42,052 copying fibsem/segmentation/augmentation.ipynb -> build/lib/fibsem/segmentation 2024-02-01T11:46:42,053 copying fibsem/segmentation/config-autolamella-mega-v4-xl.yml -> build/lib/fibsem/segmentation 2024-02-01T11:46:42,053 copying fibsem/segmentation/config-autolamella-mega-v4.yml -> build/lib/fibsem/segmentation 2024-02-01T11:46:42,054 copying fibsem/segmentation/config-autolamella-mega-v5.yml -> build/lib/fibsem/segmentation 2024-02-01T11:46:42,055 copying fibsem/segmentation/config-autolamella-serial-liftout-v1.yaml -> build/lib/fibsem/segmentation 2024-02-01T11:46:42,056 copying fibsem/segmentation/config-autolamella-waffle4.yml -> build/lib/fibsem/segmentation 2024-02-01T11:46:42,059 copying fibsem/segmentation/config.yml -> build/lib/fibsem/segmentation 2024-02-01T11:46:42,061 copying fibsem/segmentation/example.ipynb -> build/lib/fibsem/segmentation 2024-02-01T11:46:42,066 copying fibsem/segmentation/requirements.txt -> build/lib/fibsem/segmentation 2024-02-01T11:46:42,071 copying fibsem/segmentation/segmentation_config.yaml -> build/lib/fibsem/segmentation 2024-02-01T11:46:42,072 copying fibsem/segmentation/test_image.tif -> build/lib/fibsem/segmentation 2024-02-01T11:46:42,072 creating build/lib/fibsem/segmentation/docs 2024-02-01T11:46:42,073 copying fibsem/segmentation/docs/example_napari.png -> build/lib/fibsem/segmentation/docs 2024-02-01T11:46:42,074 creating build/lib/fibsem/segmentation/docs/imgs 2024-02-01T11:46:42,074 creating build/lib/fibsem/segmentation/docs/imgs/combined 2024-02-01T11:46:42,075 copying fibsem/segmentation/docs/imgs/combined/combined.jpg -> build/lib/fibsem/segmentation/docs/imgs/combined 2024-02-01T11:46:42,075 creating build/lib/fibsem/segmentation/docs/imgs/labelled 2024-02-01T11:46:42,076 copying fibsem/segmentation/docs/imgs/labelled/label.tif -> build/lib/fibsem/segmentation/docs/imgs/labelled 2024-02-01T11:46:42,077 creating build/lib/fibsem/segmentation/docs/imgs/raw 2024-02-01T11:46:42,077 copying fibsem/segmentation/docs/imgs/raw/image.tif -> build/lib/fibsem/segmentation/docs/imgs/raw 2024-02-01T11:46:42,078 creating build/lib/fibsem/segmentation/models 2024-02-01T11:46:42,078 copying fibsem/segmentation/models/.gitkeep -> build/lib/fibsem/segmentation/models 2024-02-01T11:46:42,079 copying fibsem/imaging/.gitkeep -> build/lib/fibsem/imaging 2024-02-01T11:46:42,080 copying fibsem/ui/.gitkeep -> build/lib/fibsem/ui 2024-02-01T11:46:42,080 creating build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,081 copying fibsem/ui/qtdesigner_files/CurrentAlignmentWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,081 copying fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,082 copying fibsem/ui/qtdesigner_files/FibsemDetectionWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,082 copying fibsem/ui/qtdesigner_files/FibsemEmbeddedDetectionWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,083 copying fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,083 copying fibsem/ui/qtdesigner_files/FibsemGISWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,084 copying fibsem/ui/qtdesigner_files/FibsemLabellingUI.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,085 copying fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,085 copying fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,086 copying fibsem/ui/qtdesigner_files/FibsemMillingWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,086 copying fibsem/ui/qtdesigner_files/FibsemMinimapWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,087 copying fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,087 copying fibsem/ui/qtdesigner_files/FibsemMovementWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,087 copying fibsem/ui/qtdesigner_files/FibsemMultiChemWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,088 copying fibsem/ui/qtdesigner_files/FibsemPositionsWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,089 copying fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,089 copying fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,089 copying fibsem/ui/qtdesigner_files/FibsemUI.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,090 copying fibsem/ui/qtdesigner_files/ImageSettingsWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,091 copying fibsem/ui/qtdesigner_files/detection_dialog.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,091 copying fibsem/ui/qtdesigner_files/image_viewer.py -> build/lib/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,092 copying fibsem/detection/config-autolamella-liftout.yaml -> build/lib/fibsem/detection 2024-02-01T11:46:42,092 copying fibsem/detection/config-autolamella-serial-liftout.yaml -> build/lib/fibsem/detection 2024-02-01T11:46:42,093 copying fibsem/detection/config-autolamella-waffle-v2.yaml -> build/lib/fibsem/detection 2024-02-01T11:46:42,093 copying fibsem/detection/config-autolamella-waffle.yml -> build/lib/fibsem/detection 2024-02-01T11:46:42,094 copying fibsem/detection/config-autoliftout-dm-embryo.yml -> build/lib/fibsem/detection 2024-02-01T11:46:42,094 copying fibsem/detection/test_image.tif -> build/lib/fibsem/detection 2024-02-01T11:46:42,095 creating build/lib/fibsem/detection/test_images 2024-02-01T11:46:42,095 copying fibsem/detection/test_images/test_needle_mask.tif -> build/lib/fibsem/detection/test_images 2024-02-01T11:46:42,096 copying fibsem/detection/test_images/test_needle_mask2.tif -> build/lib/fibsem/detection/test_images 2024-02-01T11:46:42,096 copying fibsem/detection/test_images/test_needle_mask3.tif -> build/lib/fibsem/detection/test_images 2024-02-01T11:46:42,097 creating build/lib/fibsem/detection/test_images/serial 2024-02-01T11:46:42,098 copying fibsem/detection/test_images/serial/serial_liftout_mask_00.tif -> build/lib/fibsem/detection/test_images/serial 2024-02-01T11:46:42,098 copying fibsem/detection/test_images/serial/serial_liftout_mask_01.tif -> build/lib/fibsem/detection/test_images/serial 2024-02-01T11:46:42,099 copying fibsem/detection/test_images/serial/serial_liftout_mask_02.tif -> build/lib/fibsem/detection/test_images/serial 2024-02-01T11:46:42,099 copying fibsem/detection/test_images/serial/serial_liftout_mask_03.tif -> build/lib/fibsem/detection/test_images/serial 2024-02-01T11:46:42,100 copying fibsem/detection/test_images/serial/serial_liftout_mask_04.tif -> build/lib/fibsem/detection/test_images/serial 2024-02-01T11:46:42,100 copying fibsem/detection/test_images/serial/serial_liftout_mask_05.tif -> build/lib/fibsem/detection/test_images/serial 2024-02-01T11:46:42,101 copying fibsem/detection/test_images/serial/serial_liftout_mask_06.tif -> build/lib/fibsem/detection/test_images/serial 2024-02-01T11:46:42,104 copying fibsem/detection/test_images/serial/serial_liftout_mask_07.tif -> build/lib/fibsem/detection/test_images/serial 2024-02-01T11:46:42,143 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-02-01T11:46:42,144 !! 2024-02-01T11:46:42,146 ******************************************************************************** 2024-02-01T11:46:42,147 Please avoid running ``setup.py`` directly. 2024-02-01T11:46:42,149 Instead, use pypa/build, pypa/installer or other 2024-02-01T11:46:42,151 standards-based tools. 2024-02-01T11:46:42,152 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-02-01T11:46:42,153 ******************************************************************************** 2024-02-01T11:46:42,154 !! 2024-02-01T11:46:42,155 self.initialize_options() 2024-02-01T11:46:42,179 installing to build/bdist.linux-armv7l/wheel 2024-02-01T11:46:42,180 running install 2024-02-01T11:46:42,203 running install_lib 2024-02-01T11:46:42,237 creating build/bdist.linux-armv7l 2024-02-01T11:46:42,238 creating build/bdist.linux-armv7l/wheel 2024-02-01T11:46:42,240 creating build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,241 copying build/lib/fibsem/config.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,243 copying build/lib/fibsem/configuration.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,245 copying build/lib/fibsem/conversions.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,248 creating build/bdist.linux-armv7l/wheel/fibsem/chat 2024-02-01T11:46:42,249 copying build/lib/fibsem/chat/.gitignore -> build/bdist.linux-armv7l/wheel/fibsem/chat 2024-02-01T11:46:42,251 copying build/lib/fibsem/chat/main.py -> build/bdist.linux-armv7l/wheel/fibsem/chat 2024-02-01T11:46:42,253 copying build/lib/fibsem/chat/requirements.txt -> build/bdist.linux-armv7l/wheel/fibsem/chat 2024-02-01T11:46:42,254 copying build/lib/fibsem/calibration.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,257 copying build/lib/fibsem/movement.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,259 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,260 copying build/lib/fibsem/segmentation/config.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,262 copying build/lib/fibsem/segmentation/_nnunet.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,264 copying build/lib/fibsem/segmentation/config-autolamella-serial-liftout-v1.yaml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,266 copying build/lib/fibsem/segmentation/augmentation.ipynb -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,268 copying build/lib/fibsem/segmentation/config-autolamella-mega-v4-xl.yml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,271 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs 2024-02-01T11:46:42,272 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs 2024-02-01T11:46:42,273 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/labelled 2024-02-01T11:46:42,274 copying build/lib/fibsem/segmentation/docs/imgs/labelled/label.tif -> build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/labelled 2024-02-01T11:46:42,300 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/combined 2024-02-01T11:46:42,301 copying build/lib/fibsem/segmentation/docs/imgs/combined/combined.jpg -> build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/combined 2024-02-01T11:46:42,329 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/raw 2024-02-01T11:46:42,330 copying build/lib/fibsem/segmentation/docs/imgs/raw/image.tif -> build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/raw 2024-02-01T11:46:42,354 copying build/lib/fibsem/segmentation/docs/example_napari.png -> build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs 2024-02-01T11:46:42,399 copying build/lib/fibsem/segmentation/dataset.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,401 copying build/lib/fibsem/segmentation/segmentation_config.yaml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,402 copying build/lib/fibsem/segmentation/example.ipynb -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,405 copying build/lib/fibsem/segmentation/model.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,408 copying build/lib/fibsem/segmentation/config.yml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,409 copying build/lib/fibsem/segmentation/config-autolamella-waffle4.yml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,411 copying build/lib/fibsem/segmentation/config-autolamella-mega-v4.yml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,413 copying build/lib/fibsem/segmentation/README.md -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,416 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/models 2024-02-01T11:46:42,416 copying build/lib/fibsem/segmentation/models/.gitkeep -> build/bdist.linux-armv7l/wheel/fibsem/segmentation/models 2024-02-01T11:46:42,418 copying build/lib/fibsem/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,419 copying build/lib/fibsem/segmentation/sam_model.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,421 copying build/lib/fibsem/segmentation/config-autolamella-mega-v5.yml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,423 copying build/lib/fibsem/segmentation/utils.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,425 copying build/lib/fibsem/segmentation/inference.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,427 copying build/lib/fibsem/segmentation/train.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,429 copying build/lib/fibsem/segmentation/requirements.txt -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,431 copying build/lib/fibsem/segmentation/test_image.tif -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,453 copying build/lib/fibsem/segmentation/onnx_model.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,455 copying build/lib/fibsem/segmentation/nnunet_model.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation 2024-02-01T11:46:42,457 copying build/lib/fibsem/alignment.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,459 copying build/lib/fibsem/acquire.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,462 creating build/bdist.linux-armv7l/wheel/fibsem/db 2024-02-01T11:46:42,463 copying build/lib/fibsem/db/config.yaml -> build/bdist.linux-armv7l/wheel/fibsem/db 2024-02-01T11:46:42,464 copying build/lib/fibsem/db/util.py -> build/bdist.linux-armv7l/wheel/fibsem/db 2024-02-01T11:46:42,467 copying build/lib/fibsem/db/app.py -> build/bdist.linux-armv7l/wheel/fibsem/db 2024-02-01T11:46:42,469 copying build/lib/fibsem/db/notebook.ipynb -> build/bdist.linux-armv7l/wheel/fibsem/db 2024-02-01T11:46:42,471 copying build/lib/fibsem/gis.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,473 copying build/lib/fibsem/structures.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,476 copying build/lib/fibsem/microscope.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,482 copying build/lib/fibsem/__init__.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,484 creating build/bdist.linux-armv7l/wheel/fibsem/tools 2024-02-01T11:46:42,485 copying build/lib/fibsem/tools/run_manipulator_calibration.py -> build/bdist.linux-armv7l/wheel/fibsem/tools 2024-02-01T11:46:42,486 copying build/lib/fibsem/tools/_parser.py -> build/bdist.linux-armv7l/wheel/fibsem/tools 2024-02-01T11:46:42,488 copying build/lib/fibsem/tools/telemetry.py -> build/bdist.linux-armv7l/wheel/fibsem/tools 2024-02-01T11:46:42,490 copying build/lib/fibsem/tools/run_split_dataset.py -> build/bdist.linux-armv7l/wheel/fibsem/tools 2024-02-01T11:46:42,492 creating build/bdist.linux-armv7l/wheel/fibsem/imaging 2024-02-01T11:46:42,493 copying build/lib/fibsem/imaging/_tile.py -> build/bdist.linux-armv7l/wheel/fibsem/imaging 2024-02-01T11:46:42,496 copying build/lib/fibsem/imaging/masks.py -> build/bdist.linux-armv7l/wheel/fibsem/imaging 2024-02-01T11:46:42,498 copying build/lib/fibsem/imaging/.gitkeep -> build/bdist.linux-armv7l/wheel/fibsem/imaging 2024-02-01T11:46:42,499 copying build/lib/fibsem/imaging/autogamma.py -> build/bdist.linux-armv7l/wheel/fibsem/imaging 2024-02-01T11:46:42,501 copying build/lib/fibsem/imaging/__init__.py -> build/bdist.linux-armv7l/wheel/fibsem/imaging 2024-02-01T11:46:42,503 copying build/lib/fibsem/imaging/utils.py -> build/bdist.linux-armv7l/wheel/fibsem/imaging 2024-02-01T11:46:42,505 creating build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,506 copying build/lib/fibsem/ui/FibsemLabellingUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,509 copying build/lib/fibsem/ui/FibsemMultiChemWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,511 copying build/lib/fibsem/ui/FibsemAlignmentWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,513 copying build/lib/fibsem/ui/_stylesheets.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,515 copying build/lib/fibsem/ui/FibsemFeatureLabellingUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,517 copying build/lib/fibsem/ui/FibsemImageSettingsWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,520 copying build/lib/fibsem/ui/FibsemMillingWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,523 copying build/lib/fibsem/ui/FibsemCryoDepositionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,525 copying build/lib/fibsem/ui/FibsemMovementWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,527 copying build/lib/fibsem/ui/windows.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,530 copying build/lib/fibsem/ui/FibsemSystemSetupWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,532 copying build/lib/fibsem/ui/FibsemDetectionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,534 copying build/lib/fibsem/ui/FibsemModelTrainingWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,538 creating build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,539 copying build/lib/fibsem/ui/qtdesigner_files/FibsemLabellingUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,542 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMultiChemWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,544 copying build/lib/fibsem/ui/qtdesigner_files/detection_dialog.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,547 copying build/lib/fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,549 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMillingWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,552 copying build/lib/fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,555 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMovementWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,558 copying build/lib/fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,560 copying build/lib/fibsem/ui/qtdesigner_files/image_viewer.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,563 copying build/lib/fibsem/ui/qtdesigner_files/FibsemDetectionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,565 copying build/lib/fibsem/ui/qtdesigner_files/CurrentAlignmentWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,568 copying build/lib/fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,570 copying build/lib/fibsem/ui/qtdesigner_files/FibsemGISWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,573 copying build/lib/fibsem/ui/qtdesigner_files/FibsemEmbeddedDetectionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,575 copying build/lib/fibsem/ui/qtdesigner_files/FibsemUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,577 copying build/lib/fibsem/ui/qtdesigner_files/FibsemPositionsWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,580 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMinimapWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,583 copying build/lib/fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,585 copying build/lib/fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,588 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,591 copying build/lib/fibsem/ui/qtdesigner_files/ImageSettingsWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2024-02-01T11:46:42,595 copying build/lib/fibsem/ui/.gitkeep -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,596 copying build/lib/fibsem/ui/FibsemImageViewer.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,599 copying build/lib/fibsem/ui/FibsemGISWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,602 copying build/lib/fibsem/ui/FibsemEmbeddedDetectionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,605 copying build/lib/fibsem/ui/FibsemUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,607 copying build/lib/fibsem/ui/__init__.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,609 copying build/lib/fibsem/ui/FibsemDetectionUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,612 copying build/lib/fibsem/ui/FibsemPositionsWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,614 copying build/lib/fibsem/ui/utils.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,618 copying build/lib/fibsem/ui/FibsemMinimapWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,621 copying build/lib/fibsem/ui/FibsemCryoDepositionWidget_qt.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,623 copying build/lib/fibsem/ui/FibsemSegmentationModelWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,626 copying build/lib/fibsem/ui/FibsemManipulatorWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,628 copying build/lib/fibsem/ui/FibsemMicroscopeConfigurationWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui 2024-02-01T11:46:42,631 copying build/lib/fibsem/validation.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,634 copying build/lib/fibsem/milling.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,636 copying build/lib/fibsem/utils.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,639 creating build/bdist.linux-armv7l/wheel/fibsem/config 2024-02-01T11:46:42,640 copying build/lib/fibsem/config/system.yaml -> build/bdist.linux-armv7l/wheel/fibsem/config 2024-02-01T11:46:42,641 copying build/lib/fibsem/config/positions.yaml -> build/bdist.linux-armv7l/wheel/fibsem/config 2024-02-01T11:46:42,643 copying build/lib/fibsem/config/protocol.yaml -> build/bdist.linux-armv7l/wheel/fibsem/config 2024-02-01T11:46:42,645 copying build/lib/fibsem/config/user-configurations.yaml -> build/bdist.linux-armv7l/wheel/fibsem/config 2024-02-01T11:46:42,647 copying build/lib/fibsem/config/microscope-configuration.yaml -> build/bdist.linux-armv7l/wheel/fibsem/config 2024-02-01T11:46:42,649 copying build/lib/fibsem/config/deposition.dbp -> build/bdist.linux-armv7l/wheel/fibsem/config 2024-02-01T11:46:42,650 copying build/lib/fibsem/constants.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,652 copying build/lib/fibsem/_version.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,654 creating build/bdist.linux-armv7l/wheel/fibsem/detection 2024-02-01T11:46:42,655 copying build/lib/fibsem/detection/config-autolamella-liftout.yaml -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-02-01T11:46:42,657 copying build/lib/fibsem/detection/config-autolamella-serial-liftout.yaml -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-02-01T11:46:42,659 copying build/lib/fibsem/detection/config-autolamella-waffle.yml -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-02-01T11:46:42,660 copying build/lib/fibsem/detection/config-autolamella-waffle-v2.yaml -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-02-01T11:46:42,662 copying build/lib/fibsem/detection/config-autoliftout-dm-embryo.yml -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-02-01T11:46:42,664 copying build/lib/fibsem/detection/evaluation.py -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-02-01T11:46:42,666 copying build/lib/fibsem/detection/detection.py -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-02-01T11:46:42,669 copying build/lib/fibsem/detection/__init__.py -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-02-01T11:46:42,670 copying build/lib/fibsem/detection/utils.py -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-02-01T11:46:42,672 copying build/lib/fibsem/detection/run_evaluation.py -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-02-01T11:46:42,674 copying build/lib/fibsem/detection/test_image.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection 2024-02-01T11:46:42,703 creating build/bdist.linux-armv7l/wheel/fibsem/detection/test_images 2024-02-01T11:46:42,704 copying build/lib/fibsem/detection/test_images/test_needle_mask3.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images 2024-02-01T11:46:42,706 copying build/lib/fibsem/detection/test_images/test_needle_mask.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images 2024-02-01T11:46:42,709 copying build/lib/fibsem/detection/test_images/test_needle_mask2.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images 2024-02-01T11:46:42,711 creating build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-02-01T11:46:42,712 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_02.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-02-01T11:46:42,715 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_06.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-02-01T11:46:42,717 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_03.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-02-01T11:46:42,719 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_05.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-02-01T11:46:42,721 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_01.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-02-01T11:46:42,723 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_00.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-02-01T11:46:42,726 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_04.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-02-01T11:46:42,728 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_07.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2024-02-01T11:46:42,730 copying build/lib/fibsem/patterning.py -> build/bdist.linux-armv7l/wheel/fibsem 2024-02-01T11:46:42,733 running install_egg_info 2024-02-01T11:46:42,775 Copying fibsem.egg-info to build/bdist.linux-armv7l/wheel/fibsem-0.3.2-py3.11.egg-info 2024-02-01T11:46:42,787 running install_scripts 2024-02-01T11:46:42,807 creating build/bdist.linux-armv7l/wheel/fibsem-0.3.2.dist-info/WHEEL 2024-02-01T11:46:42,810 creating '/tmp/pip-wheel-_rq7itkm/fibsem-0.3.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-01T11:46:42,812 adding 'fibsem/__init__.py' 2024-02-01T11:46:42,813 adding 'fibsem/_version.py' 2024-02-01T11:46:42,815 adding 'fibsem/acquire.py' 2024-02-01T11:46:42,818 adding 'fibsem/alignment.py' 2024-02-01T11:46:42,820 adding 'fibsem/calibration.py' 2024-02-01T11:46:42,822 adding 'fibsem/config.py' 2024-02-01T11:46:42,823 adding 'fibsem/configuration.py' 2024-02-01T11:46:42,825 adding 'fibsem/constants.py' 2024-02-01T11:46:42,826 adding 'fibsem/conversions.py' 2024-02-01T11:46:42,827 adding 'fibsem/gis.py' 2024-02-01T11:46:42,851 adding 'fibsem/microscope.py' 2024-02-01T11:46:42,854 adding 'fibsem/milling.py' 2024-02-01T11:46:42,855 adding 'fibsem/movement.py' 2024-02-01T11:46:42,859 adding 'fibsem/patterning.py' 2024-02-01T11:46:42,865 adding 'fibsem/structures.py' 2024-02-01T11:46:42,868 adding 'fibsem/utils.py' 2024-02-01T11:46:42,870 adding 'fibsem/validation.py' 2024-02-01T11:46:42,872 adding 'fibsem/chat/.gitignore' 2024-02-01T11:46:42,873 adding 'fibsem/chat/main.py' 2024-02-01T11:46:42,874 adding 'fibsem/chat/requirements.txt' 2024-02-01T11:46:42,876 adding 'fibsem/config/deposition.dbp' 2024-02-01T11:46:42,878 adding 'fibsem/config/microscope-configuration.yaml' 2024-02-01T11:46:42,879 adding 'fibsem/config/positions.yaml' 2024-02-01T11:46:42,880 adding 'fibsem/config/protocol.yaml' 2024-02-01T11:46:42,882 adding 'fibsem/config/system.yaml' 2024-02-01T11:46:42,883 adding 'fibsem/config/user-configurations.yaml' 2024-02-01T11:46:42,885 adding 'fibsem/db/app.py' 2024-02-01T11:46:42,886 adding 'fibsem/db/config.yaml' 2024-02-01T11:46:42,888 adding 'fibsem/db/notebook.ipynb' 2024-02-01T11:46:42,890 adding 'fibsem/db/util.py' 2024-02-01T11:46:42,891 adding 'fibsem/detection/__init__.py' 2024-02-01T11:46:42,892 adding 'fibsem/detection/config-autolamella-liftout.yaml' 2024-02-01T11:46:42,894 adding 'fibsem/detection/config-autolamella-serial-liftout.yaml' 2024-02-01T11:46:42,895 adding 'fibsem/detection/config-autolamella-waffle-v2.yaml' 2024-02-01T11:46:42,896 adding 'fibsem/detection/config-autolamella-waffle.yml' 2024-02-01T11:46:42,897 adding 'fibsem/detection/config-autoliftout-dm-embryo.yml' 2024-02-01T11:46:42,902 adding 'fibsem/detection/detection.py' 2024-02-01T11:46:42,904 adding 'fibsem/detection/evaluation.py' 2024-02-01T11:46:42,905 adding 'fibsem/detection/run_evaluation.py' 2024-02-01T11:46:43,331 adding 'fibsem/detection/test_image.tif' 2024-02-01T11:46:43,342 adding 'fibsem/detection/utils.py' 2024-02-01T11:46:43,344 adding 'fibsem/detection/test_images/test_needle_mask.tif' 2024-02-01T11:46:43,346 adding 'fibsem/detection/test_images/test_needle_mask2.tif' 2024-02-01T11:46:43,347 adding 'fibsem/detection/test_images/test_needle_mask3.tif' 2024-02-01T11:46:43,350 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_00.tif' 2024-02-01T11:46:43,353 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_01.tif' 2024-02-01T11:46:43,355 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_02.tif' 2024-02-01T11:46:43,358 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_03.tif' 2024-02-01T11:46:43,360 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_04.tif' 2024-02-01T11:46:43,362 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_05.tif' 2024-02-01T11:46:43,364 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_06.tif' 2024-02-01T11:46:43,366 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_07.tif' 2024-02-01T11:46:43,368 adding 'fibsem/imaging/.gitkeep' 2024-02-01T11:46:43,369 adding 'fibsem/imaging/__init__.py' 2024-02-01T11:46:43,372 adding 'fibsem/imaging/_tile.py' 2024-02-01T11:46:43,373 adding 'fibsem/imaging/autogamma.py' 2024-02-01T11:46:43,375 adding 'fibsem/imaging/masks.py' 2024-02-01T11:46:43,376 adding 'fibsem/imaging/utils.py' 2024-02-01T11:46:43,379 adding 'fibsem/segmentation/README.md' 2024-02-01T11:46:43,380 adding 'fibsem/segmentation/__init__.py' 2024-02-01T11:46:43,382 adding 'fibsem/segmentation/_nnunet.py' 2024-02-01T11:46:43,384 adding 'fibsem/segmentation/augmentation.ipynb' 2024-02-01T11:46:43,385 adding 'fibsem/segmentation/config-autolamella-mega-v4-xl.yml' 2024-02-01T11:46:43,386 adding 'fibsem/segmentation/config-autolamella-mega-v4.yml' 2024-02-01T11:46:43,387 adding 'fibsem/segmentation/config-autolamella-mega-v5.yml' 2024-02-01T11:46:43,388 adding 'fibsem/segmentation/config-autolamella-serial-liftout-v1.yaml' 2024-02-01T11:46:43,390 adding 'fibsem/segmentation/config-autolamella-waffle4.yml' 2024-02-01T11:46:43,391 adding 'fibsem/segmentation/config.py' 2024-02-01T11:46:43,392 adding 'fibsem/segmentation/config.yml' 2024-02-01T11:46:43,394 adding 'fibsem/segmentation/dataset.py' 2024-02-01T11:46:43,405 adding 'fibsem/segmentation/example.ipynb' 2024-02-01T11:46:43,407 adding 'fibsem/segmentation/inference.py' 2024-02-01T11:46:43,408 adding 'fibsem/segmentation/model.py' 2024-02-01T11:46:43,410 adding 'fibsem/segmentation/nnunet_model.py' 2024-02-01T11:46:43,411 adding 'fibsem/segmentation/onnx_model.py' 2024-02-01T11:46:43,412 adding 'fibsem/segmentation/requirements.txt' 2024-02-01T11:46:43,414 adding 'fibsem/segmentation/sam_model.py' 2024-02-01T11:46:43,415 adding 'fibsem/segmentation/segmentation_config.yaml' 2024-02-01T11:46:43,567 adding 'fibsem/segmentation/test_image.tif' 2024-02-01T11:46:43,577 adding 'fibsem/segmentation/train.py' 2024-02-01T11:46:43,579 adding 'fibsem/segmentation/utils.py' 2024-02-01T11:46:43,941 adding 'fibsem/segmentation/docs/example_napari.png' 2024-02-01T11:46:44,103 adding 'fibsem/segmentation/docs/imgs/combined/combined.jpg' 2024-02-01T11:46:44,154 adding 'fibsem/segmentation/docs/imgs/labelled/label.tif' 2024-02-01T11:46:44,319 adding 'fibsem/segmentation/docs/imgs/raw/image.tif' 2024-02-01T11:46:44,329 adding 'fibsem/segmentation/models/.gitkeep' 2024-02-01T11:46:44,331 adding 'fibsem/tools/_parser.py' 2024-02-01T11:46:44,332 adding 'fibsem/tools/run_manipulator_calibration.py' 2024-02-01T11:46:44,333 adding 'fibsem/tools/run_split_dataset.py' 2024-02-01T11:46:44,334 adding 'fibsem/tools/telemetry.py' 2024-02-01T11:46:44,336 adding 'fibsem/ui/.gitkeep' 2024-02-01T11:46:44,338 adding 'fibsem/ui/FibsemAlignmentWidget.py' 2024-02-01T11:46:44,339 adding 'fibsem/ui/FibsemCryoDepositionWidget.py' 2024-02-01T11:46:44,340 adding 'fibsem/ui/FibsemCryoDepositionWidget_qt.py' 2024-02-01T11:46:44,342 adding 'fibsem/ui/FibsemDetectionUI.py' 2024-02-01T11:46:44,344 adding 'fibsem/ui/FibsemDetectionWidget.py' 2024-02-01T11:46:44,346 adding 'fibsem/ui/FibsemEmbeddedDetectionWidget.py' 2024-02-01T11:46:44,348 adding 'fibsem/ui/FibsemFeatureLabellingUI.py' 2024-02-01T11:46:44,350 adding 'fibsem/ui/FibsemGISWidget.py' 2024-02-01T11:46:44,353 adding 'fibsem/ui/FibsemImageSettingsWidget.py' 2024-02-01T11:46:44,355 adding 'fibsem/ui/FibsemImageViewer.py' 2024-02-01T11:46:44,357 adding 'fibsem/ui/FibsemLabellingUI.py' 2024-02-01T11:46:44,359 adding 'fibsem/ui/FibsemManipulatorWidget.py' 2024-02-01T11:46:44,361 adding 'fibsem/ui/FibsemMicroscopeConfigurationWidget.py' 2024-02-01T11:46:44,365 adding 'fibsem/ui/FibsemMillingWidget.py' 2024-02-01T11:46:44,369 adding 'fibsem/ui/FibsemMinimapWidget.py' 2024-02-01T11:46:44,370 adding 'fibsem/ui/FibsemModelTrainingWidget.py' 2024-02-01T11:46:44,373 adding 'fibsem/ui/FibsemMovementWidget.py' 2024-02-01T11:46:44,374 adding 'fibsem/ui/FibsemMultiChemWidget.py' 2024-02-01T11:46:44,376 adding 'fibsem/ui/FibsemPositionsWidget.py' 2024-02-01T11:46:44,377 adding 'fibsem/ui/FibsemSegmentationModelWidget.py' 2024-02-01T11:46:44,379 adding 'fibsem/ui/FibsemSystemSetupWidget.py' 2024-02-01T11:46:44,380 adding 'fibsem/ui/FibsemUI.py' 2024-02-01T11:46:44,381 adding 'fibsem/ui/__init__.py' 2024-02-01T11:46:44,383 adding 'fibsem/ui/_stylesheets.py' 2024-02-01T11:46:44,386 adding 'fibsem/ui/utils.py' 2024-02-01T11:46:44,388 adding 'fibsem/ui/windows.py' 2024-02-01T11:46:44,390 adding 'fibsem/ui/qtdesigner_files/CurrentAlignmentWidget.py' 2024-02-01T11:46:44,391 adding 'fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py' 2024-02-01T11:46:44,393 adding 'fibsem/ui/qtdesigner_files/FibsemDetectionWidget.py' 2024-02-01T11:46:44,394 adding 'fibsem/ui/qtdesigner_files/FibsemEmbeddedDetectionWidget.py' 2024-02-01T11:46:44,395 adding 'fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py' 2024-02-01T11:46:44,397 adding 'fibsem/ui/qtdesigner_files/FibsemGISWidget.py' 2024-02-01T11:46:44,398 adding 'fibsem/ui/qtdesigner_files/FibsemLabellingUI.py' 2024-02-01T11:46:44,400 adding 'fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py' 2024-02-01T11:46:44,403 adding 'fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py' 2024-02-01T11:46:44,405 adding 'fibsem/ui/qtdesigner_files/FibsemMillingWidget.py' 2024-02-01T11:46:44,407 adding 'fibsem/ui/qtdesigner_files/FibsemMinimapWidget.py' 2024-02-01T11:46:44,409 adding 'fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py' 2024-02-01T11:46:44,411 adding 'fibsem/ui/qtdesigner_files/FibsemMovementWidget.py' 2024-02-01T11:46:44,412 adding 'fibsem/ui/qtdesigner_files/FibsemMultiChemWidget.py' 2024-02-01T11:46:44,414 adding 'fibsem/ui/qtdesigner_files/FibsemPositionsWidget.py' 2024-02-01T11:46:44,415 adding 'fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py' 2024-02-01T11:46:44,416 adding 'fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py' 2024-02-01T11:46:44,417 adding 'fibsem/ui/qtdesigner_files/FibsemUI.py' 2024-02-01T11:46:44,420 adding 'fibsem/ui/qtdesigner_files/ImageSettingsWidget.py' 2024-02-01T11:46:44,421 adding 'fibsem/ui/qtdesigner_files/detection_dialog.py' 2024-02-01T11:46:44,424 adding 'fibsem/ui/qtdesigner_files/image_viewer.py' 2024-02-01T11:46:44,426 adding 'fibsem-0.3.2.dist-info/LICENSE' 2024-02-01T11:46:44,427 adding 'fibsem-0.3.2.dist-info/METADATA' 2024-02-01T11:46:44,428 adding 'fibsem-0.3.2.dist-info/WHEEL' 2024-02-01T11:46:44,429 adding 'fibsem-0.3.2.dist-info/entry_points.txt' 2024-02-01T11:46:44,430 adding 'fibsem-0.3.2.dist-info/top_level.txt' 2024-02-01T11:46:44,432 adding 'fibsem-0.3.2.dist-info/RECORD' 2024-02-01T11:46:44,546 removing build/bdist.linux-armv7l/wheel 2024-02-01T11:46:44,694 Building wheel for fibsem (setup.py): finished with status 'done' 2024-02-01T11:46:44,780 Created wheel for fibsem: filename=fibsem-0.3.2-py3-none-any.whl size=8439019 sha256=8dad9ff09be4720143e8d4a3866d6b17ed08c732b68f47dd110d400bfe2be28e 2024-02-01T11:46:44,781 Stored in directory: /tmp/pip-ephem-wheel-cache-dqn0o_nb/wheels/c9/2d/82/3e9805d3bb7ecadc695016d2ba8432e40dd4d6cf25876f8a68 2024-02-01T11:46:44,799 Successfully built fibsem 2024-02-01T11:46:44,993 Removed build tracker: '/tmp/pip-build-tracker-p12eyliq'