2024-02-14T12:02:55,504 Created temporary directory: /tmp/pip-build-tracker-7yhnwhbp 2024-02-14T12:02:55,505 Initialized build tracking at /tmp/pip-build-tracker-7yhnwhbp 2024-02-14T12:02:55,506 Created build tracker: /tmp/pip-build-tracker-7yhnwhbp 2024-02-14T12:02:55,506 Entered build tracker: /tmp/pip-build-tracker-7yhnwhbp 2024-02-14T12:02:55,507 Created temporary directory: /tmp/pip-wheel-7g61hs43 2024-02-14T12:02:55,510 Created temporary directory: /tmp/pip-ephem-wheel-cache-ske47reo 2024-02-14T12:02:55,532 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-14T12:02:55,536 2 location(s) to search for versions of cgexplore: 2024-02-14T12:02:55,536 * https://pypi.org/simple/cgexplore/ 2024-02-14T12:02:55,536 * https://www.piwheels.org/simple/cgexplore/ 2024-02-14T12:02:55,536 Fetching project page and analyzing links: https://pypi.org/simple/cgexplore/ 2024-02-14T12:02:55,537 Getting page https://pypi.org/simple/cgexplore/ 2024-02-14T12:02:55,539 Found index url https://pypi.org/simple/ 2024-02-14T12:02:55,757 Fetched page https://pypi.org/simple/cgexplore/ as application/vnd.pypi.simple.v1+json 2024-02-14T12:02:55,758 Skipping link: No binaries permitted for cgexplore: https://files.pythonhosted.org/packages/a6/68/4a68d4048597e98640b0d333a947b3e8dd1b9c9846fe337a766e328e37a7/cgexplore-2024.2.14.0-py3-none-any.whl (from https://pypi.org/simple/cgexplore/) (requires-python:>=3.11) 2024-02-14T12:02:55,759 Found link https://files.pythonhosted.org/packages/e3/19/c702a618dabe6f9186bd90df2d75b9af47505ba7f5aac5fef8c1339bb52f/cgexplore-2024.2.14.0.tar.gz (from https://pypi.org/simple/cgexplore/) (requires-python:>=3.11), version: 2024.2.14.0 2024-02-14T12:02:55,760 Fetching project page and analyzing links: https://www.piwheels.org/simple/cgexplore/ 2024-02-14T12:02:55,760 Getting page https://www.piwheels.org/simple/cgexplore/ 2024-02-14T12:02:55,762 Found index url https://www.piwheels.org/simple/ 2024-02-14T12:02:55,924 Fetched page https://www.piwheels.org/simple/cgexplore/ as text/html 2024-02-14T12:02:55,926 Skipping link: not a file: https://www.piwheels.org/simple/cgexplore/ 2024-02-14T12:02:55,926 Skipping link: not a file: https://pypi.org/simple/cgexplore/ 2024-02-14T12:02:55,944 Given no hashes to check 1 links for project 'cgexplore': discarding no candidates 2024-02-14T12:02:55,962 Collecting cgexplore==2024.2.14.0 2024-02-14T12:02:55,965 Created temporary directory: /tmp/pip-unpack-jhyax997 2024-02-14T12:02:56,214 Downloading cgexplore-2024.2.14.0.tar.gz (1.3 MB) 2024-02-14T12:02:57,262 Added cgexplore==2024.2.14.0 from https://files.pythonhosted.org/packages/e3/19/c702a618dabe6f9186bd90df2d75b9af47505ba7f5aac5fef8c1339bb52f/cgexplore-2024.2.14.0.tar.gz to build tracker '/tmp/pip-build-tracker-7yhnwhbp' 2024-02-14T12:02:57,268 Created temporary directory: /tmp/pip-build-env-9j4xilq8 2024-02-14T12:02:57,272 Installing build dependencies: started 2024-02-14T12:02:57,274 Running command pip subprocess to install build dependencies 2024-02-14T12:02:58,926 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-02-14T12:03:00,043 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-14T12:03:01,464 Collecting setuptools 2024-02-14T12:03:01,481 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.0-py3-none-any.whl (819 kB) 2024-02-14T12:03:01,783 Collecting setuptools-scm 2024-02-14T12:03:01,798 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB) 2024-02-14T12:03:02,132 Collecting packaging>=20 (from setuptools-scm) 2024-02-14T12:03:02,147 Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB) 2024-02-14T12:03:02,258 Collecting typing-extensions (from setuptools-scm) 2024-02-14T12:03:02,272 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.9.0-py3-none-any.whl (32 kB) 2024-02-14T12:03:04,733 Installing collected packages: typing-extensions, setuptools, packaging, setuptools-scm 2024-02-14T12:03:07,376 Successfully installed packaging-23.2 setuptools-69.1.0 setuptools-scm-8.0.4 typing-extensions-4.9.0 2024-02-14T12:03:07,657 [notice] A new release of pip is available: 23.3.1 -> 24.0 2024-02-14T12:03:07,658 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-14T12:03:07,937 Installing build dependencies: finished with status 'done' 2024-02-14T12:03:07,940 Getting requirements to build wheel: started 2024-02-14T12:03:07,941 Running command Getting requirements to build wheel 2024-02-14T12:03:08,776 running egg_info 2024-02-14T12:03:08,781 writing src/cgexplore.egg-info/PKG-INFO 2024-02-14T12:03:08,788 writing dependency_links to src/cgexplore.egg-info/dependency_links.txt 2024-02-14T12:03:08,792 writing requirements to src/cgexplore.egg-info/requires.txt 2024-02-14T12:03:08,794 writing top-level names to src/cgexplore.egg-info/top_level.txt 2024-02-14T12:03:08,831 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-02-14T12:03:08,835 reading manifest file 'src/cgexplore.egg-info/SOURCES.txt' 2024-02-14T12:03:08,848 adding license file 'LICENSE' 2024-02-14T12:03:08,852 writing manifest file 'src/cgexplore.egg-info/SOURCES.txt' 2024-02-14T12:03:08,969 Getting requirements to build wheel: finished with status 'done' 2024-02-14T12:03:08,980 Installing backend dependencies: started 2024-02-14T12:03:08,981 Running command pip subprocess to install backend dependencies 2024-02-14T12:03:10,122 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-02-14T12:03:10,649 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-14T12:03:11,131 Collecting wheel 2024-02-14T12:03:11,146 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-02-14T12:03:13,382 Installing collected packages: wheel 2024-02-14T12:03:13,605 Creating /tmp/pip-build-env-9j4xilq8/normal/local/bin 2024-02-14T12:03:13,608 changing mode of /tmp/pip-build-env-9j4xilq8/normal/local/bin/wheel to 755 2024-02-14T12:03:13,620 Successfully installed wheel-0.42.0 2024-02-14T12:03:13,898 [notice] A new release of pip is available: 23.3.1 -> 24.0 2024-02-14T12:03:13,899 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-14T12:03:14,127 Installing backend dependencies: finished with status 'done' 2024-02-14T12:03:14,129 Created temporary directory: /tmp/pip-modern-metadata-7rtubvph 2024-02-14T12:03:14,131 Preparing metadata (pyproject.toml): started 2024-02-14T12:03:14,132 Running command Preparing metadata (pyproject.toml) 2024-02-14T12:03:15,011 running dist_info 2024-02-14T12:03:15,017 creating /tmp/pip-modern-metadata-7rtubvph/cgexplore.egg-info 2024-02-14T12:03:15,023 writing /tmp/pip-modern-metadata-7rtubvph/cgexplore.egg-info/PKG-INFO 2024-02-14T12:03:15,030 writing dependency_links to /tmp/pip-modern-metadata-7rtubvph/cgexplore.egg-info/dependency_links.txt 2024-02-14T12:03:15,033 writing requirements to /tmp/pip-modern-metadata-7rtubvph/cgexplore.egg-info/requires.txt 2024-02-14T12:03:15,034 writing top-level names to /tmp/pip-modern-metadata-7rtubvph/cgexplore.egg-info/top_level.txt 2024-02-14T12:03:15,036 writing manifest file '/tmp/pip-modern-metadata-7rtubvph/cgexplore.egg-info/SOURCES.txt' 2024-02-14T12:03:15,076 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-02-14T12:03:15,079 reading manifest file '/tmp/pip-modern-metadata-7rtubvph/cgexplore.egg-info/SOURCES.txt' 2024-02-14T12:03:15,082 adding license file 'LICENSE' 2024-02-14T12:03:15,084 writing manifest file '/tmp/pip-modern-metadata-7rtubvph/cgexplore.egg-info/SOURCES.txt' 2024-02-14T12:03:15,085 creating '/tmp/pip-modern-metadata-7rtubvph/cgexplore-2024.2.14.0.dist-info' 2024-02-14T12:03:15,244 Preparing metadata (pyproject.toml): finished with status 'done' 2024-02-14T12:03:15,248 Source in /tmp/pip-wheel-7g61hs43/cgexplore_06dfecce62b64cbb945e08579bf13f80 has version 2024.2.14.0, which satisfies requirement cgexplore==2024.2.14.0 from https://files.pythonhosted.org/packages/e3/19/c702a618dabe6f9186bd90df2d75b9af47505ba7f5aac5fef8c1339bb52f/cgexplore-2024.2.14.0.tar.gz 2024-02-14T12:03:15,249 Removed cgexplore==2024.2.14.0 from https://files.pythonhosted.org/packages/e3/19/c702a618dabe6f9186bd90df2d75b9af47505ba7f5aac5fef8c1339bb52f/cgexplore-2024.2.14.0.tar.gz from build tracker '/tmp/pip-build-tracker-7yhnwhbp' 2024-02-14T12:03:15,255 Created temporary directory: /tmp/pip-unpack-qv6g_zb0 2024-02-14T12:03:15,256 Created temporary directory: /tmp/pip-unpack-o0ii1mor 2024-02-14T12:03:15,295 Building wheels for collected packages: cgexplore 2024-02-14T12:03:15,299 Created temporary directory: /tmp/pip-wheel-6f43zj4p 2024-02-14T12:03:15,300 Destination directory: /tmp/pip-wheel-6f43zj4p 2024-02-14T12:03:15,302 Building wheel for cgexplore (pyproject.toml): started 2024-02-14T12:03:15,303 Running command Building wheel for cgexplore (pyproject.toml) 2024-02-14T12:03:16,122 running bdist_wheel 2024-02-14T12:03:16,144 running build 2024-02-14T12:03:16,145 running build_py 2024-02-14T12:03:16,151 creating build 2024-02-14T12:03:16,151 creating build/lib 2024-02-14T12:03:16,152 creating build/lib/cgexplore 2024-02-14T12:03:16,153 copying src/cgexplore/angles.py -> build/lib/cgexplore 2024-02-14T12:03:16,156 copying src/cgexplore/geom.py -> build/lib/cgexplore 2024-02-14T12:03:16,158 copying src/cgexplore/_version.py -> build/lib/cgexplore 2024-02-14T12:03:16,159 copying src/cgexplore/utilities.py -> build/lib/cgexplore 2024-02-14T12:03:16,161 copying src/cgexplore/assigned_system.py -> build/lib/cgexplore 2024-02-14T12:03:16,163 copying src/cgexplore/shape.py -> build/lib/cgexplore 2024-02-14T12:03:16,166 copying src/cgexplore/torsions.py -> build/lib/cgexplore 2024-02-14T12:03:16,168 copying src/cgexplore/__init__.py -> build/lib/cgexplore 2024-02-14T12:03:16,170 copying src/cgexplore/beads.py -> build/lib/cgexplore 2024-02-14T12:03:16,172 copying src/cgexplore/forcefield.py -> build/lib/cgexplore 2024-02-14T12:03:16,174 copying src/cgexplore/molecule_construction.py -> build/lib/cgexplore 2024-02-14T12:03:16,177 copying src/cgexplore/generation_utilities.py -> build/lib/cgexplore 2024-02-14T12:03:16,179 copying src/cgexplore/nonbonded.py -> build/lib/cgexplore 2024-02-14T12:03:16,181 copying src/cgexplore/ensembles.py -> build/lib/cgexplore 2024-02-14T12:03:16,183 copying src/cgexplore/bonds.py -> build/lib/cgexplore 2024-02-14T12:03:16,185 copying src/cgexplore/martini.py -> build/lib/cgexplore 2024-02-14T12:03:16,187 copying src/cgexplore/visualisation.py -> build/lib/cgexplore 2024-02-14T12:03:16,189 copying src/cgexplore/errors.py -> build/lib/cgexplore 2024-02-14T12:03:16,190 copying src/cgexplore/databases.py -> build/lib/cgexplore 2024-02-14T12:03:16,192 copying src/cgexplore/openmm_optimizer.py -> build/lib/cgexplore 2024-02-14T12:03:16,195 running egg_info 2024-02-14T12:03:16,199 writing src/cgexplore.egg-info/PKG-INFO 2024-02-14T12:03:16,206 writing dependency_links to src/cgexplore.egg-info/dependency_links.txt 2024-02-14T12:03:16,209 writing requirements to src/cgexplore.egg-info/requires.txt 2024-02-14T12:03:16,210 writing top-level names to src/cgexplore.egg-info/top_level.txt 2024-02-14T12:03:16,237 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-02-14T12:03:16,240 reading manifest file 'src/cgexplore.egg-info/SOURCES.txt' 2024-02-14T12:03:16,253 adding license file 'LICENSE' 2024-02-14T12:03:16,258 writing manifest file 'src/cgexplore.egg-info/SOURCES.txt' 2024-02-14T12:03:16,262 creating build/lib/cgexplore/data 2024-02-14T12:03:16,263 copying src/cgexplore/data/martini_v3.0.0.itp -> build/lib/cgexplore/data 2024-02-14T12:03:16,503 installing to build/bdist.linux-armv7l/wheel 2024-02-14T12:03:16,504 running install 2024-02-14T12:03:16,527 running install_lib 2024-02-14T12:03:16,532 creating build/bdist.linux-armv7l 2024-02-14T12:03:16,533 creating build/bdist.linux-armv7l/wheel 2024-02-14T12:03:16,535 creating build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,536 copying build/lib/cgexplore/angles.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,538 copying build/lib/cgexplore/geom.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,540 copying build/lib/cgexplore/_version.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,542 copying build/lib/cgexplore/utilities.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,545 copying build/lib/cgexplore/assigned_system.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,547 copying build/lib/cgexplore/shape.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,550 copying build/lib/cgexplore/torsions.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,552 copying build/lib/cgexplore/__init__.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,554 copying build/lib/cgexplore/beads.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,556 copying build/lib/cgexplore/forcefield.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,559 copying build/lib/cgexplore/molecule_construction.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,561 copying build/lib/cgexplore/generation_utilities.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,564 copying build/lib/cgexplore/nonbonded.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,566 creating build/bdist.linux-armv7l/wheel/cgexplore/data 2024-02-14T12:03:16,567 copying build/lib/cgexplore/data/martini_v3.0.0.itp -> build/bdist.linux-armv7l/wheel/cgexplore/data 2024-02-14T12:03:16,803 copying build/lib/cgexplore/ensembles.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,807 copying build/lib/cgexplore/bonds.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,809 copying build/lib/cgexplore/martini.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,811 copying build/lib/cgexplore/visualisation.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,813 copying build/lib/cgexplore/errors.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,815 copying build/lib/cgexplore/databases.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,816 copying build/lib/cgexplore/openmm_optimizer.py -> build/bdist.linux-armv7l/wheel/cgexplore 2024-02-14T12:03:16,819 running install_egg_info 2024-02-14T12:03:16,824 Copying src/cgexplore.egg-info to build/bdist.linux-armv7l/wheel/cgexplore-2024.2.14.0-py3.11.egg-info 2024-02-14T12:03:16,833 running install_scripts 2024-02-14T12:03:16,848 creating build/bdist.linux-armv7l/wheel/cgexplore-2024.2.14.0.dist-info/WHEEL 2024-02-14T12:03:16,850 creating '/tmp/pip-wheel-6f43zj4p/.tmp-n1sl096d/cgexplore-2024.2.14.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-14T12:03:16,853 adding 'cgexplore/__init__.py' 2024-02-14T12:03:16,854 adding 'cgexplore/_version.py' 2024-02-14T12:03:16,856 adding 'cgexplore/angles.py' 2024-02-14T12:03:16,858 adding 'cgexplore/assigned_system.py' 2024-02-14T12:03:16,860 adding 'cgexplore/beads.py' 2024-02-14T12:03:16,861 adding 'cgexplore/bonds.py' 2024-02-14T12:03:16,863 adding 'cgexplore/databases.py' 2024-02-14T12:03:16,864 adding 'cgexplore/ensembles.py' 2024-02-14T12:03:16,866 adding 'cgexplore/errors.py' 2024-02-14T12:03:16,869 adding 'cgexplore/forcefield.py' 2024-02-14T12:03:16,871 adding 'cgexplore/generation_utilities.py' 2024-02-14T12:03:16,873 adding 'cgexplore/geom.py' 2024-02-14T12:03:16,874 adding 'cgexplore/martini.py' 2024-02-14T12:03:16,875 adding 'cgexplore/molecule_construction.py' 2024-02-14T12:03:16,877 adding 'cgexplore/nonbonded.py' 2024-02-14T12:03:16,879 adding 'cgexplore/openmm_optimizer.py' 2024-02-14T12:03:16,882 adding 'cgexplore/shape.py' 2024-02-14T12:03:16,884 adding 'cgexplore/torsions.py' 2024-02-14T12:03:16,886 adding 'cgexplore/utilities.py' 2024-02-14T12:03:16,887 adding 'cgexplore/visualisation.py' 2024-02-14T12:03:18,052 adding 'cgexplore/data/martini_v3.0.0.itp' 2024-02-14T12:03:18,152 adding 'cgexplore-2024.2.14.0.dist-info/LICENSE' 2024-02-14T12:03:18,153 adding 'cgexplore-2024.2.14.0.dist-info/METADATA' 2024-02-14T12:03:18,154 adding 'cgexplore-2024.2.14.0.dist-info/WHEEL' 2024-02-14T12:03:18,155 adding 'cgexplore-2024.2.14.0.dist-info/top_level.txt' 2024-02-14T12:03:18,156 adding 'cgexplore-2024.2.14.0.dist-info/RECORD' 2024-02-14T12:03:18,171 removing build/bdist.linux-armv7l/wheel 2024-02-14T12:03:18,310 Building wheel for cgexplore (pyproject.toml): finished with status 'done' 2024-02-14T12:03:18,346 Created wheel for cgexplore: filename=cgexplore-2024.2.14.0-py3-none-any.whl size=1387592 sha256=98574a0a1eb50fde9e008adabe3c971f4b8dee7b95ae02365001adb4a4b850dd 2024-02-14T12:03:18,347 Stored in directory: /tmp/pip-ephem-wheel-cache-ske47reo/wheels/87/e9/ed/538b55cafd658b007f60238329fc979fdac52147019f249f5b 2024-02-14T12:03:18,359 Successfully built cgexplore 2024-02-14T12:03:18,401 Removed build tracker: '/tmp/pip-build-tracker-7yhnwhbp'