2024-03-16T06:06:44,424 Created temporary directory: /tmp/pip-build-tracker-v6p15gsx
2024-03-16T06:06:44,426 Initialized build tracking at /tmp/pip-build-tracker-v6p15gsx
2024-03-16T06:06:44,427 Created build tracker: /tmp/pip-build-tracker-v6p15gsx
2024-03-16T06:06:44,427 Entered build tracker: /tmp/pip-build-tracker-v6p15gsx
2024-03-16T06:06:44,428 Created temporary directory: /tmp/pip-wheel-wf3njt59
2024-03-16T06:06:44,431 Created temporary directory: /tmp/pip-ephem-wheel-cache-_e8yetdx
2024-03-16T06:06:44,455 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-16T06:06:44,459 2 location(s) to search for versions of fibsem:
2024-03-16T06:06:44,459 * https://pypi.org/simple/fibsem/
2024-03-16T06:06:44,459 * https://www.piwheels.org/simple/fibsem/
2024-03-16T06:06:44,671 Fetching project page and analyzing links: https://pypi.org/simple/fibsem/
2024-03-16T06:06:44,672 Getting page https://pypi.org/simple/fibsem/
2024-03-16T06:06:44,673 Found index url https://pypi.org/simple/
2024-03-16T06:06:44,898 Fetched page https://pypi.org/simple/fibsem/ as application/vnd.pypi.simple.v1+json
2024-03-16T06:06:44,903   Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/4c/cf/0ed2a796e278cf9de3d52e287cc7d8d9892c21c0a00920a9ff30f5033a56/fibsem-0.2.1a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:44,904   Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ad/73/b8cf8db0dba6e191be400b025e534b4f6d7d18c39d86428101720ee58e4e/fibsem-0.2.1a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:44,904   Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/d7/30/b93e42954d23659272a1b8ac6f3dd60da6eff0df55fc4d31bb515f6934eb/fibsem-0.2.2a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:44,905   Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/c8/8f/4bfbe20bfa2ca615b74ad68a1317c1b61df9a93f5f8c9df9e223c9b20623/fibsem-0.2.2a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:44,906   Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/7c/63/681df259de02d04424d8e71530649f0949504d5b31aaf5086651b5804d0c/fibsem-0.2.3a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:44,906   Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/36/98/67400e49fe61d7e9e58d04099a516c039d4493a9ce346276a2cb37774dcd/fibsem-0.2.3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:44,907   Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/39/cc/5b8579067af3dc74509ceaba38d5117cde72f44a85ca8bcc56f5ebee7260/fibsem-0.2.4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:44,907   Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/43/13/625dba2d4741c02a3e6c970399a725b644b9a058dadb2f5fea9e9420b4e3/fibsem-0.2.5-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:44,908   Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/87/1d/1562b356490f6c485f927c52d4b36e774bd5b9588d7a8da4a3dc9432db01/fibsem-0.3.0a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:44,909   Found link https://files.pythonhosted.org/packages/ad/3e/400c07e0574bbab09f711951db2f6ad3f367a8feff8f6cbafa7af89fd67a/fibsem-0.3.0a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0a0
2024-03-16T06:06:44,910   Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/df/fb/4bad22a49352a49befdb7d1513163de5d8d1a4cfb0e60fa3ac4c67f20482/fibsem-0.3.0a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:44,911   Found link https://files.pythonhosted.org/packages/4e/58/d870caa49f7754b016226db2b7f0ec101164622fc2e82511e7bae7f95af6/fibsem-0.3.0a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0a1
2024-03-16T06:06:44,912   Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/05/51/0a0cc14778c2ae7f68a601aa26821327fc35e08bc81546ba6e3d10bc704f/fibsem-0.3.0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:44,913   Found link https://files.pythonhosted.org/packages/fc/2b/fea39a412194d35634c6d7f2e0768021aa0f024b880a17251a3f377e1c5c/fibsem-0.3.0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0
2024-03-16T06:06:44,914   Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/32/8b/d53be8a146bfa866e850b13e6b80977d4c1bc527852fc4d0c0cfe0b6fc56/fibsem-0.3.1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:44,915   Found link https://files.pythonhosted.org/packages/52/84/03322d031fa283e8c468f6e706d59b3efe59dbb4e2341ffa012c5f68c127/fibsem-0.3.1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.1
2024-03-16T06:06:44,915   Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/07/65/22b4f873c57c647b123c552214de8f533f12706e6ff2b419f08b02c6f421/fibsem-0.3.2a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:44,916   Found link https://files.pythonhosted.org/packages/78/de/5da6cf780c6ae414322a1fd3ae2f80223b2ab197b5045886658688b67986/fibsem-0.3.2a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.2a1
2024-03-16T06:06:44,917   Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/f1/9d/ddd526104faf19ad44ad941b136dc14a30e289abdfdffba15bc11d34580d/fibsem-0.3.2-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:44,917   Found link https://files.pythonhosted.org/packages/ef/10/13c01c548f92955d5069ea9caebdd1023f876a338bc336ac42356f609ee3/fibsem-0.3.2.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.2
2024-03-16T06:06:44,918   Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/11/d6/ca062c93720e61354700869b036fbf65a1c66d5ce32d7d6c4bc341aacc1b/fibsem-0.3.3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:44,919   Found link https://files.pythonhosted.org/packages/4e/ae/8048dff3e2eeb2c922176c5c412f1aed2346897e814bb76d175a9c1cd82e/fibsem-0.3.3.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.3
2024-03-16T06:06:44,920 Fetching project page and analyzing links: https://www.piwheels.org/simple/fibsem/
2024-03-16T06:06:44,921 Getting page https://www.piwheels.org/simple/fibsem/
2024-03-16T06:06:44,922 Found index url https://www.piwheels.org/simple/
2024-03-16T06:06:45,463 Fetched page https://www.piwheels.org/simple/fibsem/ as text/html
2024-03-16T06:06:45,466   Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.3.2-py3-none-any.whl#sha256=8dad9ff09be4720143e8d4a3866d6b17ed08c732b68f47dd110d400bfe2be28e (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:45,467   Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.3.2a1-py3-none-any.whl#sha256=f5309995df9eadda9e861edc7dd4d07452210426b10d4c4da4c2b405eb8e2ac4 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:45,468   Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.3.1-py3-none-any.whl#sha256=72ca906da40a31401ad7636438566ad77e6d6ef434c85d4517c7411645c41027 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:45,502   Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.3.0-py3-none-any.whl#sha256=61d366cbae13eecb465c904050eba503bb875f93c6e743eedcfae3ca9cf5e2ac (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:45,503   Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.3.0a1-py3-none-any.whl#sha256=21ae6ee6be3ad2f8832a6d457a20aea2627a25340a672d8a42f9f0488d8a710c (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:45,504   Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.3.0a0-py3-none-any.whl#sha256=4e29ec9054961edc9242d2cb332c01000bcb0574069ad23261e41ac7f1489a4f (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9)
2024-03-16T06:06:45,505 Skipping link: not a file: https://www.piwheels.org/simple/fibsem/
2024-03-16T06:06:45,505 Skipping link: not a file: https://pypi.org/simple/fibsem/
2024-03-16T06:06:45,525 Given no hashes to check 1 links for project 'fibsem': discarding no candidates
2024-03-16T06:06:45,545 Collecting fibsem==0.3.3
2024-03-16T06:06:45,549   Created temporary directory: /tmp/pip-unpack-m7llvnv3
2024-03-16T06:06:46,187   Downloading fibsem-0.3.3.tar.gz (9.7 MB)
2024-03-16T06:06:49,640   Added fibsem==0.3.3 from https://files.pythonhosted.org/packages/4e/ae/8048dff3e2eeb2c922176c5c412f1aed2346897e814bb76d175a9c1cd82e/fibsem-0.3.3.tar.gz to build tracker '/tmp/pip-build-tracker-v6p15gsx'
2024-03-16T06:06:49,642   Running setup.py (path:/tmp/pip-wheel-wf3njt59/fibsem_f01b14da98824a39b2166b7771819109/setup.py) egg_info for package fibsem
2024-03-16T06:06:49,643   Created temporary directory: /tmp/pip-pip-egg-info-eb6_e6hu
2024-03-16T06:06:49,643   Preparing metadata (setup.py): started
2024-03-16T06:06:49,644   Running command python setup.py egg_info
2024-03-16T06:06:50,826   running egg_info
2024-03-16T06:06:50,827   creating /tmp/pip-pip-egg-info-eb6_e6hu/fibsem.egg-info
2024-03-16T06:06:50,853   writing /tmp/pip-pip-egg-info-eb6_e6hu/fibsem.egg-info/PKG-INFO
2024-03-16T06:06:50,857   writing dependency_links to /tmp/pip-pip-egg-info-eb6_e6hu/fibsem.egg-info/dependency_links.txt
2024-03-16T06:06:50,859   writing entry points to /tmp/pip-pip-egg-info-eb6_e6hu/fibsem.egg-info/entry_points.txt
2024-03-16T06:06:50,861   writing requirements to /tmp/pip-pip-egg-info-eb6_e6hu/fibsem.egg-info/requires.txt
2024-03-16T06:06:50,862   writing top-level names to /tmp/pip-pip-egg-info-eb6_e6hu/fibsem.egg-info/top_level.txt
2024-03-16T06:06:50,864   writing manifest file '/tmp/pip-pip-egg-info-eb6_e6hu/fibsem.egg-info/SOURCES.txt'
2024-03-16T06:06:50,955   reading manifest file '/tmp/pip-pip-egg-info-eb6_e6hu/fibsem.egg-info/SOURCES.txt'
2024-03-16T06:06:50,956   reading manifest template 'MANIFEST.in'
2024-03-16T06:06:50,958   warning: no previously-included files matching '__pycache__' found under directory '*'
2024-03-16T06:06:50,959   warning: no previously-included files matching '*.py[co]' found under directory '*'
2024-03-16T06:06:50,959   warning: no previously-included files matching '*.ui' found under directory '*'
2024-03-16T06:06:50,960   adding license file 'LICENSE'
2024-03-16T06:06:50,963   writing manifest file '/tmp/pip-pip-egg-info-eb6_e6hu/fibsem.egg-info/SOURCES.txt'
2024-03-16T06:06:51,071   Preparing metadata (setup.py): finished with status 'done'
2024-03-16T06:06:51,075   Source in /tmp/pip-wheel-wf3njt59/fibsem_f01b14da98824a39b2166b7771819109 has version 0.3.3, which satisfies requirement fibsem==0.3.3 from https://files.pythonhosted.org/packages/4e/ae/8048dff3e2eeb2c922176c5c412f1aed2346897e814bb76d175a9c1cd82e/fibsem-0.3.3.tar.gz
2024-03-16T06:06:51,076   Removed fibsem==0.3.3 from https://files.pythonhosted.org/packages/4e/ae/8048dff3e2eeb2c922176c5c412f1aed2346897e814bb76d175a9c1cd82e/fibsem-0.3.3.tar.gz from build tracker '/tmp/pip-build-tracker-v6p15gsx'
2024-03-16T06:06:51,083 Created temporary directory: /tmp/pip-unpack-qz832jnn
2024-03-16T06:06:51,084 Created temporary directory: /tmp/pip-unpack-_8brpekv
2024-03-16T06:06:51,112 Building wheels for collected packages: fibsem
2024-03-16T06:06:51,117   Created temporary directory: /tmp/pip-wheel-fk5978c3
2024-03-16T06:06:51,118   Building wheel for fibsem (setup.py): started
2024-03-16T06:06:51,119   Destination directory: /tmp/pip-wheel-fk5978c3
2024-03-16T06:06:51,119   Running command python setup.py bdist_wheel
2024-03-16T06:06:52,480   running bdist_wheel
2024-03-16T06:06:52,583   running build
2024-03-16T06:06:52,584   running build_py
2024-03-16T06:06:52,613   creating build
2024-03-16T06:06:52,613   creating build/lib
2024-03-16T06:06:52,614   creating build/lib/fibsem
2024-03-16T06:06:52,616   copying fibsem/patterning.py -> build/lib/fibsem
2024-03-16T06:06:52,619   copying fibsem/__init__.py -> build/lib/fibsem
2024-03-16T06:06:52,622   copying fibsem/config.py -> build/lib/fibsem
2024-03-16T06:06:52,624   copying fibsem/gis.py -> build/lib/fibsem
2024-03-16T06:06:52,625   copying fibsem/_version.py -> build/lib/fibsem
2024-03-16T06:06:52,627   copying fibsem/calibration.py -> build/lib/fibsem
2024-03-16T06:06:52,630   copying fibsem/alignment.py -> build/lib/fibsem
2024-03-16T06:06:52,633   copying fibsem/microscope.py -> build/lib/fibsem
2024-03-16T06:06:52,642   copying fibsem/validation.py -> build/lib/fibsem
2024-03-16T06:06:52,644   copying fibsem/movement.py -> build/lib/fibsem
2024-03-16T06:06:52,646   copying fibsem/configuration.py -> build/lib/fibsem
2024-03-16T06:06:52,648   copying fibsem/constants.py -> build/lib/fibsem
2024-03-16T06:06:52,650   copying fibsem/acquire.py -> build/lib/fibsem
2024-03-16T06:06:52,652   copying fibsem/conversions.py -> build/lib/fibsem
2024-03-16T06:06:52,654   copying fibsem/utils.py -> build/lib/fibsem
2024-03-16T06:06:52,657   copying fibsem/milling.py -> build/lib/fibsem
2024-03-16T06:06:52,659   copying fibsem/structures.py -> build/lib/fibsem
2024-03-16T06:06:52,665   creating build/lib/fibsem/ui
2024-03-16T06:06:52,666   copying fibsem/ui/FibsemSegmentationModelWidget.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,668   copying fibsem/ui/__init__.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,669   copying fibsem/ui/FibsemMillingWidget.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,672   copying fibsem/ui/FibsemLabellingUI.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,675   copying fibsem/ui/FibsemCryoDepositionWidget_qt.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,677   copying fibsem/ui/FibsemManipulatorWidget.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,679   copying fibsem/ui/FibsemImageSettingsWidget.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,683   copying fibsem/ui/FibsemMicroscopeConfigurationWidgetBase.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,685   copying fibsem/ui/FibsemCryoDepositionWidget.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,687   copying fibsem/ui/FibsemMultiChemWidget.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,689   copying fibsem/ui/FibsemAlignmentWidget.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,691   copying fibsem/ui/FibsemGISWidget.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,694   copying fibsem/ui/windows.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,698   copying fibsem/ui/FibsemDetectionWidget.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,701   copying fibsem/ui/FibsemEmbeddedDetectionWidget.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,704   copying fibsem/ui/FibsemFeatureLabellingUI.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,706   copying fibsem/ui/FibsemUI.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,709   copying fibsem/ui/FibsemDetectionUI.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,712   copying fibsem/ui/FibsemMicroscopeConfigurationWidget.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,714   copying fibsem/ui/FibsemModelTrainingWidget.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,716   copying fibsem/ui/_stylesheets.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,718   copying fibsem/ui/FibsemMovementWidget.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,721   copying fibsem/ui/FibsemPositionsWidget.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,723   copying fibsem/ui/utils.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,726   copying fibsem/ui/FibsemSystemSetupWidget.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,728   copying fibsem/ui/FibsemMinimapWidget.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,731   copying fibsem/ui/FibsemImageViewer.py -> build/lib/fibsem/ui
2024-03-16T06:06:52,734   creating build/lib/fibsem/segmentation
2024-03-16T06:06:52,735   copying fibsem/segmentation/__init__.py -> build/lib/fibsem/segmentation
2024-03-16T06:06:52,737   copying fibsem/segmentation/model.py -> build/lib/fibsem/segmentation
2024-03-16T06:06:52,739   copying fibsem/segmentation/train.py -> build/lib/fibsem/segmentation
2024-03-16T06:06:52,742   copying fibsem/segmentation/config.py -> build/lib/fibsem/segmentation
2024-03-16T06:06:52,744   copying fibsem/segmentation/sam_model.py -> build/lib/fibsem/segmentation
2024-03-16T06:06:52,746   copying fibsem/segmentation/dataset.py -> build/lib/fibsem/segmentation
2024-03-16T06:06:52,749   copying fibsem/segmentation/inference.py -> build/lib/fibsem/segmentation
2024-03-16T06:06:52,752   copying fibsem/segmentation/_nnunet.py -> build/lib/fibsem/segmentation
2024-03-16T06:06:52,755   copying fibsem/segmentation/onnx_model.py -> build/lib/fibsem/segmentation
2024-03-16T06:06:52,757   copying fibsem/segmentation/nnunet_model.py -> build/lib/fibsem/segmentation
2024-03-16T06:06:52,759   copying fibsem/segmentation/utils.py -> build/lib/fibsem/segmentation
2024-03-16T06:06:52,763   creating build/lib/fibsem/detection
2024-03-16T06:06:52,764   copying fibsem/detection/__init__.py -> build/lib/fibsem/detection
2024-03-16T06:06:52,766   copying fibsem/detection/run_evaluation.py -> build/lib/fibsem/detection
2024-03-16T06:06:52,767   copying fibsem/detection/detection.py -> build/lib/fibsem/detection
2024-03-16T06:06:52,770   copying fibsem/detection/utils.py -> build/lib/fibsem/detection
2024-03-16T06:06:52,773   copying fibsem/detection/evaluation.py -> build/lib/fibsem/detection
2024-03-16T06:06:52,776   creating build/lib/fibsem/imaging
2024-03-16T06:06:52,777   copying fibsem/imaging/__init__.py -> build/lib/fibsem/imaging
2024-03-16T06:06:52,778   copying fibsem/imaging/autogamma.py -> build/lib/fibsem/imaging
2024-03-16T06:06:52,781   copying fibsem/imaging/_tile.py -> build/lib/fibsem/imaging
2024-03-16T06:06:52,784   copying fibsem/imaging/masks.py -> build/lib/fibsem/imaging
2024-03-16T06:06:52,786   copying fibsem/imaging/utils.py -> build/lib/fibsem/imaging
2024-03-16T06:06:52,788   running egg_info
2024-03-16T06:06:52,846   writing fibsem.egg-info/PKG-INFO
2024-03-16T06:06:52,850   writing dependency_links to fibsem.egg-info/dependency_links.txt
2024-03-16T06:06:52,852   writing entry points to fibsem.egg-info/entry_points.txt
2024-03-16T06:06:52,854   writing requirements to fibsem.egg-info/requires.txt
2024-03-16T06:06:52,856   writing top-level names to fibsem.egg-info/top_level.txt
2024-03-16T06:06:52,893   reading manifest file 'fibsem.egg-info/SOURCES.txt'
2024-03-16T06:06:52,912   reading manifest template 'MANIFEST.in'
2024-03-16T06:06:52,913   warning: no previously-included files matching '__pycache__' found under directory '*'
2024-03-16T06:06:52,915   warning: no previously-included files matching '*.py[co]' found under directory '*'
2024-03-16T06:06:52,916   warning: no previously-included files matching '*.ui' found under directory '*'
2024-03-16T06:06:52,916   adding license file 'LICENSE'
2024-03-16T06:06:52,924   writing manifest file 'fibsem.egg-info/SOURCES.txt'
2024-03-16T06:06:52,927   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.chat' is absent from the `packages` configuration.
2024-03-16T06:06:52,928   !!

2024-03-16T06:06:52,930           ********************************************************************************
2024-03-16T06:06:52,931           ############################
2024-03-16T06:06:52,931           # Package would be ignored #
2024-03-16T06:06:52,932           ############################
2024-03-16T06:06:52,933           Python recognizes 'fibsem.chat' as an importable package[^1],
2024-03-16T06:06:52,934           but it is absent from setuptools' `packages` configuration.

2024-03-16T06:06:52,935           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-16T06:06:52,935           package, please make sure that 'fibsem.chat' is explicitly added
2024-03-16T06:06:52,936           to the `packages` configuration field.

2024-03-16T06:06:52,937           Alternatively, you can also rely on setuptools' discovery methods
2024-03-16T06:06:52,937           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-16T06:06:52,938           instead of `find_packages(...)`/`find:`).

2024-03-16T06:06:52,939           You can read more about "package discovery" on setuptools documentation page:

2024-03-16T06:06:52,940           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-16T06:06:52,941           If you don't want 'fibsem.chat' to be distributed and are
2024-03-16T06:06:52,941           already explicitly excluding 'fibsem.chat' via
2024-03-16T06:06:52,942           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-16T06:06:52,942           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-16T06:06:52,943           combination with a more fine grained `package-data` configuration.

2024-03-16T06:06:52,944           You can read more about "package data files" on setuptools documentation page:

2024-03-16T06:06:52,944           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-16T06:06:52,946           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-16T06:06:52,946                 even if it does not contain any `.py` files.
2024-03-16T06:06:52,947                 On the other hand, currently there is no concept of package data
2024-03-16T06:06:52,948                 directory, all directories are treated like packages.
2024-03-16T06:06:52,948           ********************************************************************************

2024-03-16T06:06:52,949   !!
2024-03-16T06:06:52,950     check.warn(importable)
2024-03-16T06:06:52,951   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.config' is absent from the `packages` configuration.
2024-03-16T06:06:52,951   !!

2024-03-16T06:06:52,952           ********************************************************************************
2024-03-16T06:06:52,953           ############################
2024-03-16T06:06:52,953           # Package would be ignored #
2024-03-16T06:06:52,954           ############################
2024-03-16T06:06:52,954           Python recognizes 'fibsem.config' as an importable package[^1],
2024-03-16T06:06:52,955           but it is absent from setuptools' `packages` configuration.

2024-03-16T06:06:52,956           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-16T06:06:52,956           package, please make sure that 'fibsem.config' is explicitly added
2024-03-16T06:06:52,957           to the `packages` configuration field.

2024-03-16T06:06:52,958           Alternatively, you can also rely on setuptools' discovery methods
2024-03-16T06:06:52,959           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-16T06:06:52,959           instead of `find_packages(...)`/`find:`).

2024-03-16T06:06:52,961           You can read more about "package discovery" on setuptools documentation page:

2024-03-16T06:06:52,962           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-16T06:06:52,963           If you don't want 'fibsem.config' to be distributed and are
2024-03-16T06:06:52,964           already explicitly excluding 'fibsem.config' via
2024-03-16T06:06:52,964           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-16T06:06:52,965           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-16T06:06:52,965           combination with a more fine grained `package-data` configuration.

2024-03-16T06:06:52,967           You can read more about "package data files" on setuptools documentation page:

2024-03-16T06:06:52,967           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-16T06:06:52,969           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-16T06:06:52,969                 even if it does not contain any `.py` files.
2024-03-16T06:06:52,970                 On the other hand, currently there is no concept of package data
2024-03-16T06:06:52,970                 directory, all directories are treated like packages.
2024-03-16T06:06:52,971           ********************************************************************************

2024-03-16T06:06:52,972   !!
2024-03-16T06:06:52,972     check.warn(importable)
2024-03-16T06:06:52,972   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.db' is absent from the `packages` configuration.
2024-03-16T06:06:52,973   !!

2024-03-16T06:06:52,974           ********************************************************************************
2024-03-16T06:06:52,974           ############################
2024-03-16T06:06:52,975           # Package would be ignored #
2024-03-16T06:06:52,975           ############################
2024-03-16T06:06:52,976           Python recognizes 'fibsem.db' as an importable package[^1],
2024-03-16T06:06:52,977           but it is absent from setuptools' `packages` configuration.

2024-03-16T06:06:52,978           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-16T06:06:52,979           package, please make sure that 'fibsem.db' is explicitly added
2024-03-16T06:06:52,980           to the `packages` configuration field.

2024-03-16T06:06:52,981           Alternatively, you can also rely on setuptools' discovery methods
2024-03-16T06:06:52,982           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-16T06:06:52,982           instead of `find_packages(...)`/`find:`).

2024-03-16T06:06:52,983           You can read more about "package discovery" on setuptools documentation page:

2024-03-16T06:06:52,984           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-16T06:06:52,985           If you don't want 'fibsem.db' to be distributed and are
2024-03-16T06:06:52,986           already explicitly excluding 'fibsem.db' via
2024-03-16T06:06:52,986           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-16T06:06:52,987           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-16T06:06:52,987           combination with a more fine grained `package-data` configuration.

2024-03-16T06:06:52,988           You can read more about "package data files" on setuptools documentation page:

2024-03-16T06:06:52,990           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-16T06:06:52,991           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-16T06:06:52,992                 even if it does not contain any `.py` files.
2024-03-16T06:06:52,992                 On the other hand, currently there is no concept of package data
2024-03-16T06:06:52,993                 directory, all directories are treated like packages.
2024-03-16T06:06:52,996           ********************************************************************************

2024-03-16T06:06:52,997   !!
2024-03-16T06:06:52,997     check.warn(importable)
2024-03-16T06:06:52,998   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.detection.test_images' is absent from the `packages` configuration.
2024-03-16T06:06:52,999   !!

2024-03-16T06:06:53,000           ********************************************************************************
2024-03-16T06:06:53,000           ############################
2024-03-16T06:06:53,001           # Package would be ignored #
2024-03-16T06:06:53,001           ############################
2024-03-16T06:06:53,002           Python recognizes 'fibsem.detection.test_images' as an importable package[^1],
2024-03-16T06:06:53,002           but it is absent from setuptools' `packages` configuration.

2024-03-16T06:06:53,003           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-16T06:06:53,003           package, please make sure that 'fibsem.detection.test_images' is explicitly added
2024-03-16T06:06:53,004           to the `packages` configuration field.

2024-03-16T06:06:53,005           Alternatively, you can also rely on setuptools' discovery methods
2024-03-16T06:06:53,005           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-16T06:06:53,006           instead of `find_packages(...)`/`find:`).

2024-03-16T06:06:53,006           You can read more about "package discovery" on setuptools documentation page:

2024-03-16T06:06:53,007           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-16T06:06:53,008           If you don't want 'fibsem.detection.test_images' to be distributed and are
2024-03-16T06:06:53,009           already explicitly excluding 'fibsem.detection.test_images' via
2024-03-16T06:06:53,009           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-16T06:06:53,010           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-16T06:06:53,010           combination with a more fine grained `package-data` configuration.

2024-03-16T06:06:53,011           You can read more about "package data files" on setuptools documentation page:

2024-03-16T06:06:53,012           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-16T06:06:53,014           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-16T06:06:53,014                 even if it does not contain any `.py` files.
2024-03-16T06:06:53,014                 On the other hand, currently there is no concept of package data
2024-03-16T06:06:53,015                 directory, all directories are treated like packages.
2024-03-16T06:06:53,015           ********************************************************************************

2024-03-16T06:06:53,016   !!
2024-03-16T06:06:53,017     check.warn(importable)
2024-03-16T06:06:53,017   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.detection.test_images.serial' is absent from the `packages` configuration.
2024-03-16T06:06:53,018   !!

2024-03-16T06:06:53,019           ********************************************************************************
2024-03-16T06:06:53,019           ############################
2024-03-16T06:06:53,020           # Package would be ignored #
2024-03-16T06:06:53,020           ############################
2024-03-16T06:06:53,021           Python recognizes 'fibsem.detection.test_images.serial' as an importable package[^1],
2024-03-16T06:06:53,021           but it is absent from setuptools' `packages` configuration.

2024-03-16T06:06:53,022           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-16T06:06:53,023           package, please make sure that 'fibsem.detection.test_images.serial' is explicitly added
2024-03-16T06:06:53,023           to the `packages` configuration field.

2024-03-16T06:06:53,024           Alternatively, you can also rely on setuptools' discovery methods
2024-03-16T06:06:53,025           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-16T06:06:53,025           instead of `find_packages(...)`/`find:`).

2024-03-16T06:06:53,026           You can read more about "package discovery" on setuptools documentation page:

2024-03-16T06:06:53,027           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-16T06:06:53,029           If you don't want 'fibsem.detection.test_images.serial' to be distributed and are
2024-03-16T06:06:53,029           already explicitly excluding 'fibsem.detection.test_images.serial' via
2024-03-16T06:06:53,030           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-16T06:06:53,030           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-16T06:06:53,031           combination with a more fine grained `package-data` configuration.

2024-03-16T06:06:53,032           You can read more about "package data files" on setuptools documentation page:

2024-03-16T06:06:53,033           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-16T06:06:53,034           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-16T06:06:53,034                 even if it does not contain any `.py` files.
2024-03-16T06:06:53,035                 On the other hand, currently there is no concept of package data
2024-03-16T06:06:53,035                 directory, all directories are treated like packages.
2024-03-16T06:06:53,036           ********************************************************************************

2024-03-16T06:06:53,037   !!
2024-03-16T06:06:53,037     check.warn(importable)
2024-03-16T06:06:53,038   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.segmentation.docs' is absent from the `packages` configuration.
2024-03-16T06:06:53,038   !!

2024-03-16T06:06:53,039           ********************************************************************************
2024-03-16T06:06:53,040           ############################
2024-03-16T06:06:53,040           # Package would be ignored #
2024-03-16T06:06:53,041           ############################
2024-03-16T06:06:53,041           Python recognizes 'fibsem.segmentation.docs' as an importable package[^1],
2024-03-16T06:06:53,042           but it is absent from setuptools' `packages` configuration.

2024-03-16T06:06:53,043           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-16T06:06:53,043           package, please make sure that 'fibsem.segmentation.docs' is explicitly added
2024-03-16T06:06:53,044           to the `packages` configuration field.

2024-03-16T06:06:53,045           Alternatively, you can also rely on setuptools' discovery methods
2024-03-16T06:06:53,046           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-16T06:06:53,046           instead of `find_packages(...)`/`find:`).

2024-03-16T06:06:53,047           You can read more about "package discovery" on setuptools documentation page:

2024-03-16T06:06:53,048           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-16T06:06:53,049           If you don't want 'fibsem.segmentation.docs' to be distributed and are
2024-03-16T06:06:53,050           already explicitly excluding 'fibsem.segmentation.docs' via
2024-03-16T06:06:53,051           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-16T06:06:53,052           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-16T06:06:53,053           combination with a more fine grained `package-data` configuration.

2024-03-16T06:06:53,055           You can read more about "package data files" on setuptools documentation page:

2024-03-16T06:06:53,056           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-16T06:06:53,058           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-16T06:06:53,058                 even if it does not contain any `.py` files.
2024-03-16T06:06:53,059                 On the other hand, currently there is no concept of package data
2024-03-16T06:06:53,059                 directory, all directories are treated like packages.
2024-03-16T06:06:53,060           ********************************************************************************

2024-03-16T06:06:53,061   !!
2024-03-16T06:06:53,062     check.warn(importable)
2024-03-16T06:06:53,062   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.segmentation.docs.imgs.combined' is absent from the `packages` configuration.
2024-03-16T06:06:53,063   !!

2024-03-16T06:06:53,064           ********************************************************************************
2024-03-16T06:06:53,064           ############################
2024-03-16T06:06:53,064           # Package would be ignored #
2024-03-16T06:06:53,065           ############################
2024-03-16T06:06:53,065           Python recognizes 'fibsem.segmentation.docs.imgs.combined' as an importable package[^1],
2024-03-16T06:06:53,065           but it is absent from setuptools' `packages` configuration.

2024-03-16T06:06:53,066           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-16T06:06:53,067           package, please make sure that 'fibsem.segmentation.docs.imgs.combined' is explicitly added
2024-03-16T06:06:53,067           to the `packages` configuration field.

2024-03-16T06:06:53,068           Alternatively, you can also rely on setuptools' discovery methods
2024-03-16T06:06:53,068           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-16T06:06:53,069           instead of `find_packages(...)`/`find:`).

2024-03-16T06:06:53,069           You can read more about "package discovery" on setuptools documentation page:

2024-03-16T06:06:53,070           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-16T06:06:53,071           If you don't want 'fibsem.segmentation.docs.imgs.combined' to be distributed and are
2024-03-16T06:06:53,072           already explicitly excluding 'fibsem.segmentation.docs.imgs.combined' via
2024-03-16T06:06:53,072           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-16T06:06:53,073           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-16T06:06:53,073           combination with a more fine grained `package-data` configuration.

2024-03-16T06:06:53,074           You can read more about "package data files" on setuptools documentation page:

2024-03-16T06:06:53,075           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-16T06:06:53,077           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-16T06:06:53,077                 even if it does not contain any `.py` files.
2024-03-16T06:06:53,078                 On the other hand, currently there is no concept of package data
2024-03-16T06:06:53,078                 directory, all directories are treated like packages.
2024-03-16T06:06:53,079           ********************************************************************************

2024-03-16T06:06:53,080   !!
2024-03-16T06:06:53,081     check.warn(importable)
2024-03-16T06:06:53,082   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.segmentation.docs.imgs.labelled' is absent from the `packages` configuration.
2024-03-16T06:06:53,082   !!

2024-03-16T06:06:53,083           ********************************************************************************
2024-03-16T06:06:53,084           ############################
2024-03-16T06:06:53,084           # Package would be ignored #
2024-03-16T06:06:53,085           ############################
2024-03-16T06:06:53,086           Python recognizes 'fibsem.segmentation.docs.imgs.labelled' as an importable package[^1],
2024-03-16T06:06:53,087           but it is absent from setuptools' `packages` configuration.

2024-03-16T06:06:53,088           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-16T06:06:53,090           package, please make sure that 'fibsem.segmentation.docs.imgs.labelled' is explicitly added
2024-03-16T06:06:53,091           to the `packages` configuration field.

2024-03-16T06:06:53,094           Alternatively, you can also rely on setuptools' discovery methods
2024-03-16T06:06:53,094           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-16T06:06:53,094           instead of `find_packages(...)`/`find:`).

2024-03-16T06:06:53,095           You can read more about "package discovery" on setuptools documentation page:

2024-03-16T06:06:53,096           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-16T06:06:53,097           If you don't want 'fibsem.segmentation.docs.imgs.labelled' to be distributed and are
2024-03-16T06:06:53,098           already explicitly excluding 'fibsem.segmentation.docs.imgs.labelled' via
2024-03-16T06:06:53,098           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-16T06:06:53,099           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-16T06:06:53,099           combination with a more fine grained `package-data` configuration.

2024-03-16T06:06:53,100           You can read more about "package data files" on setuptools documentation page:

2024-03-16T06:06:53,101           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-16T06:06:53,103           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-16T06:06:53,104                 even if it does not contain any `.py` files.
2024-03-16T06:06:53,104                 On the other hand, currently there is no concept of package data
2024-03-16T06:06:53,105                 directory, all directories are treated like packages.
2024-03-16T06:06:53,106           ********************************************************************************

2024-03-16T06:06:53,106   !!
2024-03-16T06:06:53,107     check.warn(importable)
2024-03-16T06:06:53,108   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.segmentation.docs.imgs.raw' is absent from the `packages` configuration.
2024-03-16T06:06:53,108   !!

2024-03-16T06:06:53,110           ********************************************************************************
2024-03-16T06:06:53,111           ############################
2024-03-16T06:06:53,111           # Package would be ignored #
2024-03-16T06:06:53,112           ############################
2024-03-16T06:06:53,112           Python recognizes 'fibsem.segmentation.docs.imgs.raw' as an importable package[^1],
2024-03-16T06:06:53,113           but it is absent from setuptools' `packages` configuration.

2024-03-16T06:06:53,114           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-16T06:06:53,115           package, please make sure that 'fibsem.segmentation.docs.imgs.raw' is explicitly added
2024-03-16T06:06:53,116           to the `packages` configuration field.

2024-03-16T06:06:53,117           Alternatively, you can also rely on setuptools' discovery methods
2024-03-16T06:06:53,117           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-16T06:06:53,119           instead of `find_packages(...)`/`find:`).

2024-03-16T06:06:53,120           You can read more about "package discovery" on setuptools documentation page:

2024-03-16T06:06:53,121           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-16T06:06:53,122           If you don't want 'fibsem.segmentation.docs.imgs.raw' to be distributed and are
2024-03-16T06:06:53,123           already explicitly excluding 'fibsem.segmentation.docs.imgs.raw' via
2024-03-16T06:06:53,124           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-16T06:06:53,124           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-16T06:06:53,125           combination with a more fine grained `package-data` configuration.

2024-03-16T06:06:53,126           You can read more about "package data files" on setuptools documentation page:

2024-03-16T06:06:53,127           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-16T06:06:53,129           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-16T06:06:53,129                 even if it does not contain any `.py` files.
2024-03-16T06:06:53,130                 On the other hand, currently there is no concept of package data
2024-03-16T06:06:53,130                 directory, all directories are treated like packages.
2024-03-16T06:06:53,131           ********************************************************************************

2024-03-16T06:06:53,152   !!
2024-03-16T06:06:53,168     check.warn(importable)
2024-03-16T06:06:53,168   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.segmentation.models' is absent from the `packages` configuration.
2024-03-16T06:06:53,169   !!

2024-03-16T06:06:53,170           ********************************************************************************
2024-03-16T06:06:53,171           ############################
2024-03-16T06:06:53,171           # Package would be ignored #
2024-03-16T06:06:53,172           ############################
2024-03-16T06:06:53,172           Python recognizes 'fibsem.segmentation.models' as an importable package[^1],
2024-03-16T06:06:53,173           but it is absent from setuptools' `packages` configuration.

2024-03-16T06:06:53,174           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-16T06:06:53,174           package, please make sure that 'fibsem.segmentation.models' is explicitly added
2024-03-16T06:06:53,175           to the `packages` configuration field.

2024-03-16T06:06:53,176           Alternatively, you can also rely on setuptools' discovery methods
2024-03-16T06:06:53,176           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-16T06:06:53,177           instead of `find_packages(...)`/`find:`).

2024-03-16T06:06:53,178           You can read more about "package discovery" on setuptools documentation page:

2024-03-16T06:06:53,179           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-16T06:06:53,180           If you don't want 'fibsem.segmentation.models' to be distributed and are
2024-03-16T06:06:53,180           already explicitly excluding 'fibsem.segmentation.models' via
2024-03-16T06:06:53,181           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-16T06:06:53,182           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-16T06:06:53,182           combination with a more fine grained `package-data` configuration.

2024-03-16T06:06:53,183           You can read more about "package data files" on setuptools documentation page:

2024-03-16T06:06:53,185           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-16T06:06:53,295           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-16T06:06:53,335                 even if it does not contain any `.py` files.
2024-03-16T06:06:53,338                 On the other hand, currently there is no concept of package data
2024-03-16T06:06:53,338                 directory, all directories are treated like packages.
2024-03-16T06:06:53,339           ********************************************************************************

2024-03-16T06:06:53,341   !!
2024-03-16T06:06:53,342     check.warn(importable)
2024-03-16T06:06:53,342   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.tools' is absent from the `packages` configuration.
2024-03-16T06:06:53,343   !!

2024-03-16T06:06:53,345           ********************************************************************************
2024-03-16T06:06:53,346           ############################
2024-03-16T06:06:53,347           # Package would be ignored #
2024-03-16T06:06:53,347           ############################
2024-03-16T06:06:53,348           Python recognizes 'fibsem.tools' as an importable package[^1],
2024-03-16T06:06:53,349           but it is absent from setuptools' `packages` configuration.

2024-03-16T06:06:53,351           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-16T06:06:53,352           package, please make sure that 'fibsem.tools' is explicitly added
2024-03-16T06:06:53,353           to the `packages` configuration field.

2024-03-16T06:06:53,360           Alternatively, you can also rely on setuptools' discovery methods
2024-03-16T06:06:53,371           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-16T06:06:53,378           instead of `find_packages(...)`/`find:`).

2024-03-16T06:06:53,379           You can read more about "package discovery" on setuptools documentation page:

2024-03-16T06:06:53,380           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-16T06:06:53,381           If you don't want 'fibsem.tools' to be distributed and are
2024-03-16T06:06:53,382           already explicitly excluding 'fibsem.tools' via
2024-03-16T06:06:53,382           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-16T06:06:53,383           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-16T06:06:53,383           combination with a more fine grained `package-data` configuration.

2024-03-16T06:06:53,384           You can read more about "package data files" on setuptools documentation page:

2024-03-16T06:06:53,386           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-16T06:06:53,388           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-16T06:06:53,388                 even if it does not contain any `.py` files.
2024-03-16T06:06:53,389                 On the other hand, currently there is no concept of package data
2024-03-16T06:06:53,390                 directory, all directories are treated like packages.
2024-03-16T06:06:53,391           ********************************************************************************

2024-03-16T06:06:53,403   !!
2024-03-16T06:06:53,417     check.warn(importable)
2024-03-16T06:06:53,430   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'fibsem.ui.qtdesigner_files' is absent from the `packages` configuration.
2024-03-16T06:06:53,431   !!

2024-03-16T06:06:53,433           ********************************************************************************
2024-03-16T06:06:53,434           ############################
2024-03-16T06:06:53,435           # Package would be ignored #
2024-03-16T06:06:53,435           ############################
2024-03-16T06:06:53,436           Python recognizes 'fibsem.ui.qtdesigner_files' as an importable package[^1],
2024-03-16T06:06:53,437           but it is absent from setuptools' `packages` configuration.

2024-03-16T06:06:53,438           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-16T06:06:53,439           package, please make sure that 'fibsem.ui.qtdesigner_files' is explicitly added
2024-03-16T06:06:53,441           to the `packages` configuration field.

2024-03-16T06:06:53,442           Alternatively, you can also rely on setuptools' discovery methods
2024-03-16T06:06:53,443           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-16T06:06:53,444           instead of `find_packages(...)`/`find:`).

2024-03-16T06:06:53,445           You can read more about "package discovery" on setuptools documentation page:

2024-03-16T06:06:53,447           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-16T06:06:53,454           If you don't want 'fibsem.ui.qtdesigner_files' to be distributed and are
2024-03-16T06:06:53,519           already explicitly excluding 'fibsem.ui.qtdesigner_files' via
2024-03-16T06:06:53,546           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-16T06:06:53,547           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-16T06:06:53,548           combination with a more fine grained `package-data` configuration.

2024-03-16T06:06:53,550           You can read more about "package data files" on setuptools documentation page:

2024-03-16T06:06:53,551           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-16T06:06:53,552           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-16T06:06:53,553                 even if it does not contain any `.py` files.
2024-03-16T06:06:53,553                 On the other hand, currently there is no concept of package data
2024-03-16T06:06:53,554                 directory, all directories are treated like packages.
2024-03-16T06:06:53,555           ********************************************************************************

2024-03-16T06:06:53,556   !!
2024-03-16T06:06:53,556     check.warn(importable)
2024-03-16T06:06:53,557   creating build/lib/fibsem/chat
2024-03-16T06:06:53,557   copying fibsem/chat/.gitignore -> build/lib/fibsem/chat
2024-03-16T06:06:53,558   copying fibsem/chat/main.py -> build/lib/fibsem/chat
2024-03-16T06:06:53,559   copying fibsem/chat/requirements.txt -> build/lib/fibsem/chat
2024-03-16T06:06:53,559   creating build/lib/fibsem/config
2024-03-16T06:06:53,560   copying fibsem/config/deposition.dbp -> build/lib/fibsem/config
2024-03-16T06:06:53,560   copying fibsem/config/microscope-configuration.yaml -> build/lib/fibsem/config
2024-03-16T06:06:53,561   copying fibsem/config/positions.yaml -> build/lib/fibsem/config
2024-03-16T06:06:53,562   copying fibsem/config/protocol.yaml -> build/lib/fibsem/config
2024-03-16T06:06:53,562   copying fibsem/config/tescan_manipulator.yaml -> build/lib/fibsem/config
2024-03-16T06:06:53,563   copying fibsem/config/user-configurations.yaml -> build/lib/fibsem/config
2024-03-16T06:06:53,563   creating build/lib/fibsem/db
2024-03-16T06:06:53,564   copying fibsem/db/app.py -> build/lib/fibsem/db
2024-03-16T06:06:53,565   copying fibsem/db/config.yaml -> build/lib/fibsem/db
2024-03-16T06:06:53,565   copying fibsem/db/notebook.ipynb -> build/lib/fibsem/db
2024-03-16T06:06:53,566   copying fibsem/db/util.py -> build/lib/fibsem/db
2024-03-16T06:06:53,566   creating build/lib/fibsem/tools
2024-03-16T06:06:53,567   copying fibsem/tools/_parser.py -> build/lib/fibsem/tools
2024-03-16T06:06:53,568   copying fibsem/tools/run_manipulator_calibration.py -> build/lib/fibsem/tools
2024-03-16T06:06:53,568   copying fibsem/tools/run_split_dataset.py -> build/lib/fibsem/tools
2024-03-16T06:06:53,569   copying fibsem/tools/telemetry.py -> build/lib/fibsem/tools
2024-03-16T06:06:53,570   copying fibsem/ui/.gitkeep -> build/lib/fibsem/ui
2024-03-16T06:06:53,570   creating build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,571   copying fibsem/ui/qtdesigner_files/CurrentAlignmentWidget.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,572   copying fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,573   copying fibsem/ui/qtdesigner_files/FibsemDetectionWidget.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,573   copying fibsem/ui/qtdesigner_files/FibsemEmbeddedDetectionWidget.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,574   copying fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,575   copying fibsem/ui/qtdesigner_files/FibsemGISWidget.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,576   copying fibsem/ui/qtdesigner_files/FibsemLabellingUI.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,576   copying fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,577   copying fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,578   copying fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidgetBase.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,579   copying fibsem/ui/qtdesigner_files/FibsemMillingWidget.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,580   copying fibsem/ui/qtdesigner_files/FibsemMinimapWidget.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,581   copying fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,581   copying fibsem/ui/qtdesigner_files/FibsemMovementWidget.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,582   copying fibsem/ui/qtdesigner_files/FibsemMultiChemWidget.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,583   copying fibsem/ui/qtdesigner_files/FibsemPositionsWidget.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,583   copying fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,584   copying fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,585   copying fibsem/ui/qtdesigner_files/FibsemUI.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,590   copying fibsem/ui/qtdesigner_files/ImageSettingsWidget.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,607   copying fibsem/ui/qtdesigner_files/detection_dialog.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,621   copying fibsem/ui/qtdesigner_files/image_viewer.py -> build/lib/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,621   copying fibsem/segmentation/README.md -> build/lib/fibsem/segmentation
2024-03-16T06:06:53,622   copying fibsem/segmentation/augmentation.ipynb -> build/lib/fibsem/segmentation
2024-03-16T06:06:53,623   copying fibsem/segmentation/config-autolamella-mega-v4-xl.yml -> build/lib/fibsem/segmentation
2024-03-16T06:06:53,623   copying fibsem/segmentation/config-autolamella-mega-v4.yml -> build/lib/fibsem/segmentation
2024-03-16T06:06:53,624   copying fibsem/segmentation/config-autolamella-mega-v5.yml -> build/lib/fibsem/segmentation
2024-03-16T06:06:53,624   copying fibsem/segmentation/config-autolamella-serial-liftout-v1.yaml -> build/lib/fibsem/segmentation
2024-03-16T06:06:53,625   copying fibsem/segmentation/config-autolamella-waffle4.yml -> build/lib/fibsem/segmentation
2024-03-16T06:06:53,626   copying fibsem/segmentation/config.yml -> build/lib/fibsem/segmentation
2024-03-16T06:06:53,626   copying fibsem/segmentation/example.ipynb -> build/lib/fibsem/segmentation
2024-03-16T06:06:53,627   copying fibsem/segmentation/requirements.txt -> build/lib/fibsem/segmentation
2024-03-16T06:06:53,628   copying fibsem/segmentation/segmentation_config.yaml -> build/lib/fibsem/segmentation
2024-03-16T06:06:53,628   copying fibsem/segmentation/spacetomo_config.yaml -> build/lib/fibsem/segmentation
2024-03-16T06:06:53,629   copying fibsem/segmentation/test_image.tif -> build/lib/fibsem/segmentation
2024-03-16T06:06:53,630   creating build/lib/fibsem/segmentation/docs
2024-03-16T06:06:53,630   copying fibsem/segmentation/docs/example_napari.png -> build/lib/fibsem/segmentation/docs
2024-03-16T06:06:53,631   creating build/lib/fibsem/segmentation/docs/imgs
2024-03-16T06:06:53,631   creating build/lib/fibsem/segmentation/docs/imgs/combined
2024-03-16T06:06:53,632   copying fibsem/segmentation/docs/imgs/combined/combined.jpg -> build/lib/fibsem/segmentation/docs/imgs/combined
2024-03-16T06:06:53,634   creating build/lib/fibsem/segmentation/docs/imgs/labelled
2024-03-16T06:06:53,640   copying fibsem/segmentation/docs/imgs/labelled/label.tif -> build/lib/fibsem/segmentation/docs/imgs/labelled
2024-03-16T06:06:53,655   creating build/lib/fibsem/segmentation/docs/imgs/raw
2024-03-16T06:06:53,661   copying fibsem/segmentation/docs/imgs/raw/image.tif -> build/lib/fibsem/segmentation/docs/imgs/raw
2024-03-16T06:06:53,662   creating build/lib/fibsem/segmentation/models
2024-03-16T06:06:53,663   copying fibsem/segmentation/models/.gitkeep -> build/lib/fibsem/segmentation/models
2024-03-16T06:06:53,663   copying fibsem/detection/config-autolamella-liftout.yaml -> build/lib/fibsem/detection
2024-03-16T06:06:53,664   copying fibsem/detection/config-autolamella-serial-liftout.yaml -> build/lib/fibsem/detection
2024-03-16T06:06:53,665   copying fibsem/detection/config-autolamella-waffle-v2.yaml -> build/lib/fibsem/detection
2024-03-16T06:06:53,665   copying fibsem/detection/config-autolamella-waffle.yml -> build/lib/fibsem/detection
2024-03-16T06:06:53,666   copying fibsem/detection/config-autoliftout-dm-embryo.yml -> build/lib/fibsem/detection
2024-03-16T06:06:53,666   copying fibsem/detection/test_image.tif -> build/lib/fibsem/detection
2024-03-16T06:06:53,667   copying fibsem/detection/test_image_2.tif -> build/lib/fibsem/detection
2024-03-16T06:06:53,668   creating build/lib/fibsem/detection/test_images
2024-03-16T06:06:53,668   copying fibsem/detection/test_images/test_needle_mask.tif -> build/lib/fibsem/detection/test_images
2024-03-16T06:06:53,669   copying fibsem/detection/test_images/test_needle_mask2.tif -> build/lib/fibsem/detection/test_images
2024-03-16T06:06:53,672   copying fibsem/detection/test_images/test_needle_mask3.tif -> build/lib/fibsem/detection/test_images
2024-03-16T06:06:53,676   creating build/lib/fibsem/detection/test_images/serial
2024-03-16T06:06:53,677   copying fibsem/detection/test_images/serial/serial_liftout_mask_00.tif -> build/lib/fibsem/detection/test_images/serial
2024-03-16T06:06:53,680   copying fibsem/detection/test_images/serial/serial_liftout_mask_01.tif -> build/lib/fibsem/detection/test_images/serial
2024-03-16T06:06:53,683   copying fibsem/detection/test_images/serial/serial_liftout_mask_02.tif -> build/lib/fibsem/detection/test_images/serial
2024-03-16T06:06:53,685   copying fibsem/detection/test_images/serial/serial_liftout_mask_03.tif -> build/lib/fibsem/detection/test_images/serial
2024-03-16T06:06:53,688   copying fibsem/detection/test_images/serial/serial_liftout_mask_04.tif -> build/lib/fibsem/detection/test_images/serial
2024-03-16T06:06:53,692   copying fibsem/detection/test_images/serial/serial_liftout_mask_05.tif -> build/lib/fibsem/detection/test_images/serial
2024-03-16T06:06:53,695   copying fibsem/detection/test_images/serial/serial_liftout_mask_06.tif -> build/lib/fibsem/detection/test_images/serial
2024-03-16T06:06:53,698   copying fibsem/detection/test_images/serial/serial_liftout_mask_07.tif -> build/lib/fibsem/detection/test_images/serial
2024-03-16T06:06:53,703   copying fibsem/imaging/.gitkeep -> build/lib/fibsem/imaging
2024-03-16T06:06:53,738   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-03-16T06:06:53,739   !!

2024-03-16T06:06:53,740           ********************************************************************************
2024-03-16T06:06:53,741           Please avoid running ``setup.py`` directly.
2024-03-16T06:06:53,742           Instead, use pypa/build, pypa/installer or other
2024-03-16T06:06:53,743           standards-based tools.

2024-03-16T06:06:53,744           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-03-16T06:06:53,745           ********************************************************************************

2024-03-16T06:06:53,746   !!
2024-03-16T06:06:53,747     self.initialize_options()
2024-03-16T06:06:53,768   installing to build/bdist.linux-armv7l/wheel
2024-03-16T06:06:53,768   running install
2024-03-16T06:06:53,792   running install_lib
2024-03-16T06:06:53,818   creating build/bdist.linux-armv7l
2024-03-16T06:06:53,819   creating build/bdist.linux-armv7l/wheel
2024-03-16T06:06:53,821   creating build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:53,822   copying build/lib/fibsem/patterning.py -> build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:53,826   copying build/lib/fibsem/__init__.py -> build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:53,828   copying build/lib/fibsem/config.py -> build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:53,830   copying build/lib/fibsem/gis.py -> build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:53,832   copying build/lib/fibsem/_version.py -> build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:53,834   copying build/lib/fibsem/calibration.py -> build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:53,837   creating build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,838   copying build/lib/fibsem/ui/FibsemSegmentationModelWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,841   creating build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,842   copying build/lib/fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,849   copying build/lib/fibsem/ui/qtdesigner_files/detection_dialog.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,851   copying build/lib/fibsem/ui/qtdesigner_files/FibsemMillingWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,854   copying build/lib/fibsem/ui/qtdesigner_files/FibsemLabellingUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,856   copying build/lib/fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,859   copying build/lib/fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidgetBase.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,863   copying build/lib/fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,866   copying build/lib/fibsem/ui/qtdesigner_files/FibsemMultiChemWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,868   copying build/lib/fibsem/ui/qtdesigner_files/ImageSettingsWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,871   copying build/lib/fibsem/ui/qtdesigner_files/FibsemGISWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,873   copying build/lib/fibsem/ui/qtdesigner_files/FibsemDetectionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,876   copying build/lib/fibsem/ui/qtdesigner_files/FibsemEmbeddedDetectionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,878   copying build/lib/fibsem/ui/qtdesigner_files/FibsemUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,880   copying build/lib/fibsem/ui/qtdesigner_files/image_viewer.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,883   copying build/lib/fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,885   copying build/lib/fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,888   copying build/lib/fibsem/ui/qtdesigner_files/FibsemMovementWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,891   copying build/lib/fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,893   copying build/lib/fibsem/ui/qtdesigner_files/FibsemPositionsWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,896   copying build/lib/fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,898   copying build/lib/fibsem/ui/qtdesigner_files/FibsemMinimapWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,901   copying build/lib/fibsem/ui/qtdesigner_files/CurrentAlignmentWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files
2024-03-16T06:06:53,903   copying build/lib/fibsem/ui/__init__.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,905   copying build/lib/fibsem/ui/FibsemMillingWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,908   copying build/lib/fibsem/ui/FibsemLabellingUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,911   copying build/lib/fibsem/ui/FibsemCryoDepositionWidget_qt.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,913   copying build/lib/fibsem/ui/FibsemManipulatorWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,916   copying build/lib/fibsem/ui/FibsemImageSettingsWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,918   copying build/lib/fibsem/ui/FibsemMicroscopeConfigurationWidgetBase.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,921   copying build/lib/fibsem/ui/FibsemCryoDepositionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,923   copying build/lib/fibsem/ui/FibsemMultiChemWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,925   copying build/lib/fibsem/ui/FibsemAlignmentWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,928   copying build/lib/fibsem/ui/FibsemGISWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,930   copying build/lib/fibsem/ui/windows.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,932   copying build/lib/fibsem/ui/FibsemDetectionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,935   copying build/lib/fibsem/ui/FibsemEmbeddedDetectionWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,938   copying build/lib/fibsem/ui/FibsemFeatureLabellingUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,941   copying build/lib/fibsem/ui/FibsemUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,944   copying build/lib/fibsem/ui/FibsemDetectionUI.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,946   copying build/lib/fibsem/ui/FibsemMicroscopeConfigurationWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,948   copying build/lib/fibsem/ui/.gitkeep -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,951   copying build/lib/fibsem/ui/FibsemModelTrainingWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,954   copying build/lib/fibsem/ui/_stylesheets.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,956   copying build/lib/fibsem/ui/FibsemMovementWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,959   copying build/lib/fibsem/ui/FibsemPositionsWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,962   copying build/lib/fibsem/ui/utils.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,965   copying build/lib/fibsem/ui/FibsemSystemSetupWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,968   copying build/lib/fibsem/ui/FibsemMinimapWidget.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,971   copying build/lib/fibsem/ui/FibsemImageViewer.py -> build/bdist.linux-armv7l/wheel/fibsem/ui
2024-03-16T06:06:53,974   creating build/bdist.linux-armv7l/wheel/fibsem/db
2024-03-16T06:06:53,976   copying build/lib/fibsem/db/notebook.ipynb -> build/bdist.linux-armv7l/wheel/fibsem/db
2024-03-16T06:06:53,979   copying build/lib/fibsem/db/util.py -> build/bdist.linux-armv7l/wheel/fibsem/db
2024-03-16T06:06:53,981   copying build/lib/fibsem/db/config.yaml -> build/bdist.linux-armv7l/wheel/fibsem/db
2024-03-16T06:06:53,983   copying build/lib/fibsem/db/app.py -> build/bdist.linux-armv7l/wheel/fibsem/db
2024-03-16T06:06:53,986   copying build/lib/fibsem/alignment.py -> build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:53,990   creating build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:53,991   copying build/lib/fibsem/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:53,993   copying build/lib/fibsem/segmentation/model.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:53,995   copying build/lib/fibsem/segmentation/config-autolamella-mega-v4.yml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:53,997   copying build/lib/fibsem/segmentation/train.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:53,999   copying build/lib/fibsem/segmentation/config.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,001   copying build/lib/fibsem/segmentation/spacetomo_config.yaml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,003   copying build/lib/fibsem/segmentation/test_image.tif -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,038   copying build/lib/fibsem/segmentation/sam_model.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,040   copying build/lib/fibsem/segmentation/augmentation.ipynb -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,042   copying build/lib/fibsem/segmentation/dataset.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,044   copying build/lib/fibsem/segmentation/requirements.txt -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,051   copying build/lib/fibsem/segmentation/config-autolamella-mega-v4-xl.yml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,053   copying build/lib/fibsem/segmentation/example.ipynb -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,057   copying build/lib/fibsem/segmentation/inference.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,058   copying build/lib/fibsem/segmentation/config-autolamella-waffle4.yml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,060   copying build/lib/fibsem/segmentation/_nnunet.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,063   creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/models
2024-03-16T06:06:54,064   copying build/lib/fibsem/segmentation/models/.gitkeep -> build/bdist.linux-armv7l/wheel/fibsem/segmentation/models
2024-03-16T06:06:54,066   copying build/lib/fibsem/segmentation/config-autolamella-mega-v5.yml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,068   creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs
2024-03-16T06:06:54,069   creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs
2024-03-16T06:06:54,071   creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/raw
2024-03-16T06:06:54,072   copying build/lib/fibsem/segmentation/docs/imgs/raw/image.tif -> build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/raw
2024-03-16T06:06:54,119   creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/combined
2024-03-16T06:06:54,121   copying build/lib/fibsem/segmentation/docs/imgs/combined/combined.jpg -> build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/combined
2024-03-16T06:06:54,152   creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/labelled
2024-03-16T06:06:54,153   copying build/lib/fibsem/segmentation/docs/imgs/labelled/label.tif -> build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/labelled
2024-03-16T06:06:54,234   copying build/lib/fibsem/segmentation/docs/example_napari.png -> build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs
2024-03-16T06:06:54,350   copying build/lib/fibsem/segmentation/config-autolamella-serial-liftout-v1.yaml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,352   copying build/lib/fibsem/segmentation/segmentation_config.yaml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,354   copying build/lib/fibsem/segmentation/onnx_model.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,357   copying build/lib/fibsem/segmentation/nnunet_model.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,359   copying build/lib/fibsem/segmentation/utils.py -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,362   copying build/lib/fibsem/segmentation/README.md -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,364   copying build/lib/fibsem/segmentation/config.yml -> build/bdist.linux-armv7l/wheel/fibsem/segmentation
2024-03-16T06:06:54,366   copying build/lib/fibsem/microscope.py -> build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:54,375   copying build/lib/fibsem/validation.py -> build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:54,378   copying build/lib/fibsem/movement.py -> build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:54,381   creating build/bdist.linux-armv7l/wheel/fibsem/chat
2024-03-16T06:06:54,382   copying build/lib/fibsem/chat/requirements.txt -> build/bdist.linux-armv7l/wheel/fibsem/chat
2024-03-16T06:06:54,385   copying build/lib/fibsem/chat/main.py -> build/bdist.linux-armv7l/wheel/fibsem/chat
2024-03-16T06:06:54,387   copying build/lib/fibsem/chat/.gitignore -> build/bdist.linux-armv7l/wheel/fibsem/chat
2024-03-16T06:06:54,389   copying build/lib/fibsem/configuration.py -> build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:54,392   creating build/bdist.linux-armv7l/wheel/fibsem/config
2024-03-16T06:06:54,393   copying build/lib/fibsem/config/user-configurations.yaml -> build/bdist.linux-armv7l/wheel/fibsem/config
2024-03-16T06:06:54,396   copying build/lib/fibsem/config/microscope-configuration.yaml -> build/bdist.linux-armv7l/wheel/fibsem/config
2024-03-16T06:06:54,399   copying build/lib/fibsem/config/protocol.yaml -> build/bdist.linux-armv7l/wheel/fibsem/config
2024-03-16T06:06:54,401   copying build/lib/fibsem/config/positions.yaml -> build/bdist.linux-armv7l/wheel/fibsem/config
2024-03-16T06:06:54,404   copying build/lib/fibsem/config/tescan_manipulator.yaml -> build/bdist.linux-armv7l/wheel/fibsem/config
2024-03-16T06:06:54,406   copying build/lib/fibsem/config/deposition.dbp -> build/bdist.linux-armv7l/wheel/fibsem/config
2024-03-16T06:06:54,408   copying build/lib/fibsem/constants.py -> build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:54,411   copying build/lib/fibsem/acquire.py -> build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:54,413   copying build/lib/fibsem/conversions.py -> build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:54,416   copying build/lib/fibsem/utils.py -> build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:54,420   creating build/bdist.linux-armv7l/wheel/fibsem/detection
2024-03-16T06:06:54,422   copying build/lib/fibsem/detection/config-autolamella-waffle.yml -> build/bdist.linux-armv7l/wheel/fibsem/detection
2024-03-16T06:06:54,424   copying build/lib/fibsem/detection/__init__.py -> build/bdist.linux-armv7l/wheel/fibsem/detection
2024-03-16T06:06:54,427   creating build/bdist.linux-armv7l/wheel/fibsem/detection/test_images
2024-03-16T06:06:54,428   copying build/lib/fibsem/detection/test_images/test_needle_mask3.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images
2024-03-16T06:06:54,431   copying build/lib/fibsem/detection/test_images/test_needle_mask2.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images
2024-03-16T06:06:54,435   copying build/lib/fibsem/detection/test_images/test_needle_mask.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images
2024-03-16T06:06:54,439   creating build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial
2024-03-16T06:06:54,440   copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_02.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial
2024-03-16T06:06:54,444   copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_00.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial
2024-03-16T06:06:54,447   copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_03.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial
2024-03-16T06:06:54,450   copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_05.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial
2024-03-16T06:06:54,453   copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_04.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial
2024-03-16T06:06:54,456   copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_01.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial
2024-03-16T06:06:54,459   copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_06.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial
2024-03-16T06:06:54,463   copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_07.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial
2024-03-16T06:06:54,466   copying build/lib/fibsem/detection/run_evaluation.py -> build/bdist.linux-armv7l/wheel/fibsem/detection
2024-03-16T06:06:54,468   copying build/lib/fibsem/detection/test_image.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection
2024-03-16T06:06:54,520   copying build/lib/fibsem/detection/config-autolamella-waffle-v2.yaml -> build/bdist.linux-armv7l/wheel/fibsem/detection
2024-03-16T06:06:54,523   copying build/lib/fibsem/detection/config-autoliftout-dm-embryo.yml -> build/bdist.linux-armv7l/wheel/fibsem/detection
2024-03-16T06:06:54,525   copying build/lib/fibsem/detection/detection.py -> build/bdist.linux-armv7l/wheel/fibsem/detection
2024-03-16T06:06:54,529   copying build/lib/fibsem/detection/config-autolamella-liftout.yaml -> build/bdist.linux-armv7l/wheel/fibsem/detection
2024-03-16T06:06:54,532   copying build/lib/fibsem/detection/config-autolamella-serial-liftout.yaml -> build/bdist.linux-armv7l/wheel/fibsem/detection
2024-03-16T06:06:54,534   copying build/lib/fibsem/detection/test_image_2.tif -> build/bdist.linux-armv7l/wheel/fibsem/detection
2024-03-16T06:06:54,586   copying build/lib/fibsem/detection/utils.py -> build/bdist.linux-armv7l/wheel/fibsem/detection
2024-03-16T06:06:54,802   copying build/lib/fibsem/detection/evaluation.py -> build/bdist.linux-armv7l/wheel/fibsem/detection
2024-03-16T06:06:54,806   copying build/lib/fibsem/milling.py -> build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:54,811   creating build/bdist.linux-armv7l/wheel/fibsem/tools
2024-03-16T06:06:54,813   copying build/lib/fibsem/tools/run_manipulator_calibration.py -> build/bdist.linux-armv7l/wheel/fibsem/tools
2024-03-16T06:06:54,816   copying build/lib/fibsem/tools/telemetry.py -> build/bdist.linux-armv7l/wheel/fibsem/tools
2024-03-16T06:06:54,820   copying build/lib/fibsem/tools/run_split_dataset.py -> build/bdist.linux-armv7l/wheel/fibsem/tools
2024-03-16T06:06:54,824   copying build/lib/fibsem/tools/_parser.py -> build/bdist.linux-armv7l/wheel/fibsem/tools
2024-03-16T06:06:54,827   copying build/lib/fibsem/structures.py -> build/bdist.linux-armv7l/wheel/fibsem
2024-03-16T06:06:54,835   creating build/bdist.linux-armv7l/wheel/fibsem/imaging
2024-03-16T06:06:54,836   copying build/lib/fibsem/imaging/__init__.py -> build/bdist.linux-armv7l/wheel/fibsem/imaging
2024-03-16T06:06:54,839   copying build/lib/fibsem/imaging/autogamma.py -> build/bdist.linux-armv7l/wheel/fibsem/imaging
2024-03-16T06:06:54,842   copying build/lib/fibsem/imaging/_tile.py -> build/bdist.linux-armv7l/wheel/fibsem/imaging
2024-03-16T06:06:54,846   copying build/lib/fibsem/imaging/masks.py -> build/bdist.linux-armv7l/wheel/fibsem/imaging
2024-03-16T06:06:54,850   copying build/lib/fibsem/imaging/.gitkeep -> build/bdist.linux-armv7l/wheel/fibsem/imaging
2024-03-16T06:06:54,852   copying build/lib/fibsem/imaging/utils.py -> build/bdist.linux-armv7l/wheel/fibsem/imaging
2024-03-16T06:06:54,855   running install_egg_info
2024-03-16T06:06:54,910   Copying fibsem.egg-info to build/bdist.linux-armv7l/wheel/fibsem-0.3.3-py3.11.egg-info
2024-03-16T06:06:54,928   running install_scripts
2024-03-16T06:06:54,953   creating build/bdist.linux-armv7l/wheel/fibsem-0.3.3.dist-info/WHEEL
2024-03-16T06:06:54,955   creating '/tmp/pip-wheel-fk5978c3/fibsem-0.3.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-03-16T06:06:54,958   adding 'fibsem/__init__.py'
2024-03-16T06:06:54,959   adding 'fibsem/_version.py'
2024-03-16T06:06:54,961   adding 'fibsem/acquire.py'
2024-03-16T06:06:54,965   adding 'fibsem/alignment.py'
2024-03-16T06:06:54,967   adding 'fibsem/calibration.py'
2024-03-16T06:06:54,969   adding 'fibsem/config.py'
2024-03-16T06:06:54,971   adding 'fibsem/configuration.py'
2024-03-16T06:06:54,972   adding 'fibsem/constants.py'
2024-03-16T06:06:54,974   adding 'fibsem/conversions.py'
2024-03-16T06:06:54,975   adding 'fibsem/gis.py'
2024-03-16T06:06:54,999   adding 'fibsem/microscope.py'
2024-03-16T06:06:55,002   adding 'fibsem/milling.py'
2024-03-16T06:06:55,003   adding 'fibsem/movement.py'
2024-03-16T06:06:55,007   adding 'fibsem/patterning.py'
2024-03-16T06:06:55,014   adding 'fibsem/structures.py'
2024-03-16T06:06:55,017   adding 'fibsem/utils.py'
2024-03-16T06:06:55,019   adding 'fibsem/validation.py'
2024-03-16T06:06:55,021   adding 'fibsem/chat/.gitignore'
2024-03-16T06:06:55,022   adding 'fibsem/chat/main.py'
2024-03-16T06:06:55,023   adding 'fibsem/chat/requirements.txt'
2024-03-16T06:06:55,025   adding 'fibsem/config/deposition.dbp'
2024-03-16T06:06:55,027   adding 'fibsem/config/microscope-configuration.yaml'
2024-03-16T06:06:55,028   adding 'fibsem/config/positions.yaml'
2024-03-16T06:06:55,030   adding 'fibsem/config/protocol.yaml'
2024-03-16T06:06:55,031   adding 'fibsem/config/tescan_manipulator.yaml'
2024-03-16T06:06:55,032   adding 'fibsem/config/user-configurations.yaml'
2024-03-16T06:06:55,034   adding 'fibsem/db/app.py'
2024-03-16T06:06:55,036   adding 'fibsem/db/config.yaml'
2024-03-16T06:06:55,037   adding 'fibsem/db/notebook.ipynb'
2024-03-16T06:06:55,039   adding 'fibsem/db/util.py'
2024-03-16T06:06:55,041   adding 'fibsem/detection/__init__.py'
2024-03-16T06:06:55,042   adding 'fibsem/detection/config-autolamella-liftout.yaml'
2024-03-16T06:06:55,044   adding 'fibsem/detection/config-autolamella-serial-liftout.yaml'
2024-03-16T06:06:55,045   adding 'fibsem/detection/config-autolamella-waffle-v2.yaml'
2024-03-16T06:06:55,046   adding 'fibsem/detection/config-autolamella-waffle.yml'
2024-03-16T06:06:55,050   adding 'fibsem/detection/config-autoliftout-dm-embryo.yml'
2024-03-16T06:06:55,056   adding 'fibsem/detection/detection.py'
2024-03-16T06:06:55,058   adding 'fibsem/detection/evaluation.py'
2024-03-16T06:06:55,060   adding 'fibsem/detection/run_evaluation.py'
2024-03-16T06:06:55,483   adding 'fibsem/detection/test_image.tif'
2024-03-16T06:06:55,777   adding 'fibsem/detection/test_image_2.tif'
2024-03-16T06:06:55,789   adding 'fibsem/detection/utils.py'
2024-03-16T06:06:55,791   adding 'fibsem/detection/test_images/test_needle_mask.tif'
2024-03-16T06:06:55,793   adding 'fibsem/detection/test_images/test_needle_mask2.tif'
2024-03-16T06:06:55,794   adding 'fibsem/detection/test_images/test_needle_mask3.tif'
2024-03-16T06:06:55,798   adding 'fibsem/detection/test_images/serial/serial_liftout_mask_00.tif'
2024-03-16T06:06:55,801   adding 'fibsem/detection/test_images/serial/serial_liftout_mask_01.tif'
2024-03-16T06:06:55,803   adding 'fibsem/detection/test_images/serial/serial_liftout_mask_02.tif'
2024-03-16T06:06:55,806   adding 'fibsem/detection/test_images/serial/serial_liftout_mask_03.tif'
2024-03-16T06:06:55,808   adding 'fibsem/detection/test_images/serial/serial_liftout_mask_04.tif'
2024-03-16T06:06:55,812   adding 'fibsem/detection/test_images/serial/serial_liftout_mask_05.tif'
2024-03-16T06:06:55,815   adding 'fibsem/detection/test_images/serial/serial_liftout_mask_06.tif'
2024-03-16T06:06:55,818   adding 'fibsem/detection/test_images/serial/serial_liftout_mask_07.tif'
2024-03-16T06:06:55,892   adding 'fibsem/imaging/.gitkeep'
2024-03-16T06:06:55,893   adding 'fibsem/imaging/__init__.py'
2024-03-16T06:06:55,895   adding 'fibsem/imaging/_tile.py'
2024-03-16T06:06:55,897   adding 'fibsem/imaging/autogamma.py'
2024-03-16T06:06:55,899   adding 'fibsem/imaging/masks.py'
2024-03-16T06:06:55,900   adding 'fibsem/imaging/utils.py'
2024-03-16T06:06:55,903   adding 'fibsem/segmentation/README.md'
2024-03-16T06:06:55,905   adding 'fibsem/segmentation/__init__.py'
2024-03-16T06:06:55,907   adding 'fibsem/segmentation/_nnunet.py'
2024-03-16T06:06:55,908   adding 'fibsem/segmentation/augmentation.ipynb'
2024-03-16T06:06:55,910   adding 'fibsem/segmentation/config-autolamella-mega-v4-xl.yml'
2024-03-16T06:06:55,912   adding 'fibsem/segmentation/config-autolamella-mega-v4.yml'
2024-03-16T06:06:55,913   adding 'fibsem/segmentation/config-autolamella-mega-v5.yml'
2024-03-16T06:06:55,914   adding 'fibsem/segmentation/config-autolamella-serial-liftout-v1.yaml'
2024-03-16T06:06:55,916   adding 'fibsem/segmentation/config-autolamella-waffle4.yml'
2024-03-16T06:06:55,917   adding 'fibsem/segmentation/config.py'
2024-03-16T06:06:55,919   adding 'fibsem/segmentation/config.yml'
2024-03-16T06:06:55,921   adding 'fibsem/segmentation/dataset.py'
2024-03-16T06:06:55,933   adding 'fibsem/segmentation/example.ipynb'
2024-03-16T06:06:55,935   adding 'fibsem/segmentation/inference.py'
2024-03-16T06:06:55,936   adding 'fibsem/segmentation/model.py'
2024-03-16T06:06:55,938   adding 'fibsem/segmentation/nnunet_model.py'
2024-03-16T06:06:55,939   adding 'fibsem/segmentation/onnx_model.py'
2024-03-16T06:06:55,940   adding 'fibsem/segmentation/requirements.txt'
2024-03-16T06:06:55,942   adding 'fibsem/segmentation/sam_model.py'
2024-03-16T06:06:55,943   adding 'fibsem/segmentation/segmentation_config.yaml'
2024-03-16T06:06:55,944   adding 'fibsem/segmentation/spacetomo_config.yaml'
2024-03-16T06:06:56,095   adding 'fibsem/segmentation/test_image.tif'
2024-03-16T06:06:56,105   adding 'fibsem/segmentation/train.py'
2024-03-16T06:06:56,107   adding 'fibsem/segmentation/utils.py'
2024-03-16T06:06:56,468   adding 'fibsem/segmentation/docs/example_napari.png'
2024-03-16T06:06:56,629   adding 'fibsem/segmentation/docs/imgs/combined/combined.jpg'
2024-03-16T06:06:56,681   adding 'fibsem/segmentation/docs/imgs/labelled/label.tif'
2024-03-16T06:06:56,845   adding 'fibsem/segmentation/docs/imgs/raw/image.tif'
2024-03-16T06:06:56,855   adding 'fibsem/segmentation/models/.gitkeep'
2024-03-16T06:06:56,857   adding 'fibsem/tools/_parser.py'
2024-03-16T06:06:56,858   adding 'fibsem/tools/run_manipulator_calibration.py'
2024-03-16T06:06:56,859   adding 'fibsem/tools/run_split_dataset.py'
2024-03-16T06:06:56,861   adding 'fibsem/tools/telemetry.py'
2024-03-16T06:06:56,864   adding 'fibsem/ui/.gitkeep'
2024-03-16T06:06:56,865   adding 'fibsem/ui/FibsemAlignmentWidget.py'
2024-03-16T06:06:56,867   adding 'fibsem/ui/FibsemCryoDepositionWidget.py'
2024-03-16T06:06:56,868   adding 'fibsem/ui/FibsemCryoDepositionWidget_qt.py'
2024-03-16T06:06:56,870   adding 'fibsem/ui/FibsemDetectionUI.py'
2024-03-16T06:06:56,872   adding 'fibsem/ui/FibsemDetectionWidget.py'
2024-03-16T06:06:56,875   adding 'fibsem/ui/FibsemEmbeddedDetectionWidget.py'
2024-03-16T06:06:56,877   adding 'fibsem/ui/FibsemFeatureLabellingUI.py'
2024-03-16T06:06:56,879   adding 'fibsem/ui/FibsemGISWidget.py'
2024-03-16T06:06:56,882   adding 'fibsem/ui/FibsemImageSettingsWidget.py'
2024-03-16T06:06:56,884   adding 'fibsem/ui/FibsemImageViewer.py'
2024-03-16T06:06:56,887   adding 'fibsem/ui/FibsemLabellingUI.py'
2024-03-16T06:06:56,889   adding 'fibsem/ui/FibsemManipulatorWidget.py'
2024-03-16T06:06:56,890   adding 'fibsem/ui/FibsemMicroscopeConfigurationWidget.py'
2024-03-16T06:06:56,892   adding 'fibsem/ui/FibsemMicroscopeConfigurationWidgetBase.py'
2024-03-16T06:06:56,897   adding 'fibsem/ui/FibsemMillingWidget.py'
2024-03-16T06:06:56,901   adding 'fibsem/ui/FibsemMinimapWidget.py'
2024-03-16T06:06:56,902   adding 'fibsem/ui/FibsemModelTrainingWidget.py'
2024-03-16T06:06:56,905   adding 'fibsem/ui/FibsemMovementWidget.py'
2024-03-16T06:06:56,906   adding 'fibsem/ui/FibsemMultiChemWidget.py'
2024-03-16T06:06:56,908   adding 'fibsem/ui/FibsemPositionsWidget.py'
2024-03-16T06:06:56,909   adding 'fibsem/ui/FibsemSegmentationModelWidget.py'
2024-03-16T06:06:56,911   adding 'fibsem/ui/FibsemSystemSetupWidget.py'
2024-03-16T06:06:56,913   adding 'fibsem/ui/FibsemUI.py'
2024-03-16T06:06:56,914   adding 'fibsem/ui/__init__.py'
2024-03-16T06:06:56,915   adding 'fibsem/ui/_stylesheets.py'
2024-03-16T06:06:56,918   adding 'fibsem/ui/utils.py'
2024-03-16T06:06:56,920   adding 'fibsem/ui/windows.py'
2024-03-16T06:06:56,922   adding 'fibsem/ui/qtdesigner_files/CurrentAlignmentWidget.py'
2024-03-16T06:06:56,924   adding 'fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py'
2024-03-16T06:06:56,925   adding 'fibsem/ui/qtdesigner_files/FibsemDetectionWidget.py'
2024-03-16T06:06:56,927   adding 'fibsem/ui/qtdesigner_files/FibsemEmbeddedDetectionWidget.py'
2024-03-16T06:06:56,928   adding 'fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py'
2024-03-16T06:06:56,929   adding 'fibsem/ui/qtdesigner_files/FibsemGISWidget.py'
2024-03-16T06:06:56,931   adding 'fibsem/ui/qtdesigner_files/FibsemLabellingUI.py'
2024-03-16T06:06:56,932   adding 'fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py'
2024-03-16T06:06:56,934   adding 'fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py'
2024-03-16T06:06:56,937   adding 'fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidgetBase.py'
2024-03-16T06:06:56,939   adding 'fibsem/ui/qtdesigner_files/FibsemMillingWidget.py'
2024-03-16T06:06:56,942   adding 'fibsem/ui/qtdesigner_files/FibsemMinimapWidget.py'
2024-03-16T06:06:56,943   adding 'fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py'
2024-03-16T06:06:56,945   adding 'fibsem/ui/qtdesigner_files/FibsemMovementWidget.py'
2024-03-16T06:06:56,946   adding 'fibsem/ui/qtdesigner_files/FibsemMultiChemWidget.py'
2024-03-16T06:06:56,947   adding 'fibsem/ui/qtdesigner_files/FibsemPositionsWidget.py'
2024-03-16T06:06:56,949   adding 'fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py'
2024-03-16T06:06:56,950   adding 'fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py'
2024-03-16T06:06:56,951   adding 'fibsem/ui/qtdesigner_files/FibsemUI.py'
2024-03-16T06:06:56,954   adding 'fibsem/ui/qtdesigner_files/ImageSettingsWidget.py'
2024-03-16T06:06:56,955   adding 'fibsem/ui/qtdesigner_files/detection_dialog.py'
2024-03-16T06:06:56,957   adding 'fibsem/ui/qtdesigner_files/image_viewer.py'
2024-03-16T06:06:56,959   adding 'fibsem-0.3.3.dist-info/LICENSE'
2024-03-16T06:06:56,961   adding 'fibsem-0.3.3.dist-info/METADATA'
2024-03-16T06:06:56,962   adding 'fibsem-0.3.3.dist-info/WHEEL'
2024-03-16T06:06:56,963   adding 'fibsem-0.3.3.dist-info/entry_points.txt'
2024-03-16T06:06:56,964   adding 'fibsem-0.3.3.dist-info/top_level.txt'
2024-03-16T06:06:56,966   adding 'fibsem-0.3.3.dist-info/RECORD'
2024-03-16T06:06:57,169   removing build/bdist.linux-armv7l/wheel
2024-03-16T06:06:57,341   Building wheel for fibsem (setup.py): finished with status 'done'
2024-03-16T06:06:57,438   Created wheel for fibsem: filename=fibsem-0.3.3-py3-none-any.whl size=9688617 sha256=a7b254be73ea431bbe9eba8b7fd7b425ad830568cfbf5ec0b574b350178d2e76
2024-03-16T06:06:57,440   Stored in directory: /tmp/pip-ephem-wheel-cache-_e8yetdx/wheels/97/23/7b/4ab7ec41239626002d7b64c2137e580aa678c807e31e20a0d2
2024-03-16T06:06:57,463 Successfully built fibsem
2024-03-16T06:06:58,081 Removed build tracker: '/tmp/pip-build-tracker-v6p15gsx'