2024-03-27T05:54:43,347 Created temporary directory: /tmp/pip-build-tracker-t48id2d4 2024-03-27T05:54:43,349 Initialized build tracking at /tmp/pip-build-tracker-t48id2d4 2024-03-27T05:54:43,349 Created build tracker: /tmp/pip-build-tracker-t48id2d4 2024-03-27T05:54:43,350 Entered build tracker: /tmp/pip-build-tracker-t48id2d4 2024-03-27T05:54:43,351 Created temporary directory: /tmp/pip-wheel-4dgnizad 2024-03-27T05:54:43,353 Created temporary directory: /tmp/pip-ephem-wheel-cache-ou834ear 2024-03-27T05:54:43,380 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-27T05:54:43,384 2 location(s) to search for versions of countess: 2024-03-27T05:54:43,384 * https://pypi.org/simple/countess/ 2024-03-27T05:54:43,384 * https://www.piwheels.org/simple/countess/ 2024-03-27T05:54:43,385 Fetching project page and analyzing links: https://pypi.org/simple/countess/ 2024-03-27T05:54:43,385 Getting page https://pypi.org/simple/countess/ 2024-03-27T05:54:43,387 Found index url https://pypi.org/simple/ 2024-03-27T05:54:43,598 Fetched page https://pypi.org/simple/countess/ as application/vnd.pypi.simple.v1+json 2024-03-27T05:54:43,613 Skipping link: No binaries permitted for countess: https://files.pythonhosted.org/packages/2c/48/cdcd019adf49257900b95630fccc2518c49cc0c0b29f28ee87c7ab89be5e/CountESS-0.0.1-py3-none-any.whl (from https://pypi.org/simple/countess/) 2024-03-27T05:54:43,614 Found link https://files.pythonhosted.org/packages/33/d0/0193515e115e35f0aa72c78bdcedde201476e679fddc4b2fa0c3ac26a6a0/CountESS-0.0.1.tar.gz (from https://pypi.org/simple/countess/), version: 0.0.1 2024-03-27T05:54:43,615 Skipping link: No binaries permitted for countess: https://files.pythonhosted.org/packages/1c/9e/c64409bbe682bf31a8e58d3036a59a89ef55dd3fa8ba2f79eb1dafbb362a/countess-0.0.1-py3-none-any.whl (from https://pypi.org/simple/countess/) 2024-03-27T05:54:43,615 Skipping link: No binaries permitted for countess: 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2024-03-27T05:54:43,623 Found link https://files.pythonhosted.org/packages/f2/71/db949054575e6e985902ad79224ddffe47da7ab15a4140f6d9db3407d4de/countess-0.0.17.tar.gz (from https://pypi.org/simple/countess/) (requires-python:>=3.10), version: 0.0.17 2024-03-27T05:54:43,624 Skipping link: No binaries permitted for countess: https://files.pythonhosted.org/packages/ad/9d/d4d28c00758a7e7ecfb13f169c531b0e97d71e4f4d584534ae51721eba37/countess-0.0.18-py3-none-any.whl (from https://pypi.org/simple/countess/) (requires-python:>=3.10) 2024-03-27T05:54:43,626 Found link https://files.pythonhosted.org/packages/c9/6c/041367ecb6af01319f44e954c7ec244337e22c8842ce9ab25b706bfa9f03/countess-0.0.18.tar.gz (from https://pypi.org/simple/countess/) (requires-python:>=3.10), version: 0.0.18 2024-03-27T05:54:43,627 Skipping link: No binaries permitted for countess: https://files.pythonhosted.org/packages/8b/3f/67aef039297d875e2b6e1e6a193934e75011d7b065da494e4baa392511b2/countess-0.0.19-py3-none-any.whl (from 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2024-03-27T05:54:43,636 Skipping link: No binaries permitted for countess: https://files.pythonhosted.org/packages/41/64/8f86d36d1dbb931711c15ab857a21d9e7c36dc34d44bc469fa5c828d0e24/countess-0.0.24-py3-none-any.whl (from https://pypi.org/simple/countess/) (requires-python:>=3.10) 2024-03-27T05:54:43,637 Found link https://files.pythonhosted.org/packages/26/46/d67e9547436223d37f712f91a82512baaf5c183e0467464aaa1e793f0345/countess-0.0.24.tar.gz (from https://pypi.org/simple/countess/) (requires-python:>=3.10), version: 0.0.24 2024-03-27T05:54:43,638 Skipping link: No binaries permitted for countess: https://files.pythonhosted.org/packages/02/fc/8ed510b3cc8991de3397241b12bb7bb23748c89c0b5dffd2ece563e1eba8/countess-0.0.25-py3-none-any.whl (from https://pypi.org/simple/countess/) (requires-python:>=3.10) 2024-03-27T05:54:43,640 Found link https://files.pythonhosted.org/packages/43/ce/65c0804e63b877918a6c138ba9ec3cd8203677d7ed3e0c6d91fd833633ed/countess-0.0.25.tar.gz (from 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2024-03-27T05:54:43,895 Skipping link: No binaries permitted for countess: https://files.pythonhosted.org/packages/3c/5e/bcfb488cdc0663fa0089f92e6ed557eedc46f98e593d0f1a87db6689c585/countess-0.0.42-py3-none-any.whl (from https://pypi.org/simple/countess/) (requires-python:>=3.9) 2024-03-27T05:54:43,897 Found link https://files.pythonhosted.org/packages/8a/01/f0f917f31d1480564e1eb0355f779e0978644ff8b4ec36cff382c0a8442f/countess-0.0.42.tar.gz (from https://pypi.org/simple/countess/) (requires-python:>=3.9), version: 0.0.42 2024-03-27T05:54:43,897 Skipping link: No binaries permitted for countess: https://files.pythonhosted.org/packages/d7/3d/670df528a0c1b009bbfdbcd9b17da1c59d558821ff8cba793d2f6cef4d7d/countess-0.0.44-py3-none-any.whl (from https://pypi.org/simple/countess/) (requires-python:>=3.9) 2024-03-27T05:54:43,898 Found link https://files.pythonhosted.org/packages/b0/db/023bf0e8f79771589bc814c2a64cd0e7499167d98bb2346a80b5b83e41c7/countess-0.0.44.tar.gz (from 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https://files.pythonhosted.org/packages/1b/55/24818c99b5b7a869c9e13d32bb651890c82adeed67dfea3cfb41f8c07005/countess-0.0.46.tar.gz (from https://pypi.org/simple/countess/) (requires-python:>=3.9), version: 0.0.46 2024-03-27T05:54:43,903 Skipping link: No binaries permitted for countess: https://files.pythonhosted.org/packages/6c/39/d4f216c4ad4bd84eed1e14150988dd358f8abe1d59526007eb037c89567f/countess-0.0.47-py3-none-any.whl (from https://pypi.org/simple/countess/) (requires-python:>=3.9) 2024-03-27T05:54:43,904 Found link https://files.pythonhosted.org/packages/09/3c/d38b98166f46c68689b4e2e0f4d9caa0c3f9c1bf0053aaca83dd802c4895/countess-0.0.47.tar.gz (from https://pypi.org/simple/countess/) (requires-python:>=3.9), version: 0.0.47 2024-03-27T05:54:43,905 Skipping link: No binaries permitted for countess: https://files.pythonhosted.org/packages/6f/f8/fc13a049fa2d1e179305992c34bb3bb23cb8e3418907c49f25d83184ec90/countess-0.0.48-py3-none-any.whl (from https://pypi.org/simple/countess/) (requires-python:>=3.9) 2024-03-27T05:54:43,906 Found link https://files.pythonhosted.org/packages/b9/c3/341b4c3228fbfd8aaece36125318cdf15fde83883c4d44082247c929df9a/countess-0.0.48.tar.gz (from https://pypi.org/simple/countess/) (requires-python:>=3.9), version: 0.0.48 2024-03-27T05:54:43,907 Skipping link: No binaries permitted for countess: https://files.pythonhosted.org/packages/c8/4f/e5c517928281a5f0617f0d5c03e01ff66ec5ca0ca891cd397897b9f3e41c/countess-0.0.49-py3-none-any.whl (from https://pypi.org/simple/countess/) (requires-python:>=3.9) 2024-03-27T05:54:43,908 Found link https://files.pythonhosted.org/packages/fe/14/67e1c4aa03704b9d6f8204ae8dcb976aeae01e47e35637a8ea5b66d05e9f/countess-0.0.49.tar.gz (from https://pypi.org/simple/countess/) (requires-python:>=3.9), version: 0.0.49 2024-03-27T05:54:43,910 Skipping link: No binaries permitted for countess: 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2024-03-27T05:54:43,915 Skipping link: No binaries permitted for countess: https://files.pythonhosted.org/packages/ba/f4/9c068fe5e7bdb947dbc7afb6e3ff895bc82937ca7ac1233c01eba324e3d9/countess-0.0.52-py3-none-any.whl (from https://pypi.org/simple/countess/) (requires-python:>=3.9) 2024-03-27T05:54:43,916 Found link https://files.pythonhosted.org/packages/47/68/e02a93f9ea3f890f51c9d889273838a8c06fb3f41214ba24695ed2042203/countess-0.0.52.tar.gz (from https://pypi.org/simple/countess/) (requires-python:>=3.9), version: 0.0.52 2024-03-27T05:54:43,918 Skipping link: No binaries permitted for countess: https://files.pythonhosted.org/packages/f4/0e/d83043c87b4d5247dac87d2d504ba0268dad069190aca76700ee79a6f9cf/countess-0.0.53-py3-none-any.whl (from https://pypi.org/simple/countess/) (requires-python:>=3.9) 2024-03-27T05:54:43,919 Found link https://files.pythonhosted.org/packages/80/51/44ab0ba5afbb9a48440d3b1986b14b685d0045e1c029a2acd2f7a731fb6b/countess-0.0.53.tar.gz (from https://pypi.org/simple/countess/) (requires-python:>=3.9), version: 0.0.53 2024-03-27T05:54:43,920 Fetching project page and analyzing links: https://www.piwheels.org/simple/countess/ 2024-03-27T05:54:43,921 Getting page https://www.piwheels.org/simple/countess/ 2024-03-27T05:54:43,923 Found index url https://www.piwheels.org/simple/ 2024-03-27T05:54:44,137 Fetched page https://www.piwheels.org/simple/countess/ as text/html 2024-03-27T05:54:44,146 Skipping link: No binaries permitted for countess: https://www.piwheels.org/simple/countess/countess-0.0.52-py3-none-any.whl#sha256=ed44a1539db7dc18125a474425238ba2a863cf92b217c00c4c6f9ec05affc6b6 (from https://www.piwheels.org/simple/countess/) (requires-python:>=3.9) 2024-03-27T05:54:44,147 Skipping link: No binaries permitted for countess: https://www.piwheels.org/simple/countess/countess-0.0.51-py3-none-any.whl#sha256=96e4aad16be0b451c02a869cf4fa1df740379117fa74b791a2d248991922197a (from https://www.piwheels.org/simple/countess/) (requires-python:>=3.9) 2024-03-27T05:54:44,148 Skipping link: No binaries permitted for countess: https://www.piwheels.org/simple/countess/countess-0.0.50-py3-none-any.whl#sha256=709cbe8b6de6d170559623bb13ef4e3960ba7a991ac8fe652155abd42c250df0 (from https://www.piwheels.org/simple/countess/) (requires-python:>=3.9) 2024-03-27T05:54:44,148 Skipping link: No binaries permitted for countess: https://www.piwheels.org/simple/countess/countess-0.0.49-py3-none-any.whl#sha256=78d9a1360336d09d524d2d7cb803da4398354fc07c04fe63994d3c7a4a6dbb18 (from https://www.piwheels.org/simple/countess/) (requires-python:>=3.9) 2024-03-27T05:54:44,149 Skipping link: No binaries permitted for countess: https://www.piwheels.org/simple/countess/countess-0.0.48-py3-none-any.whl#sha256=252671e2339925bd0a854da1e34d8bdc33eab9e635a34702af4a0a1f6e531f82 (from https://www.piwheels.org/simple/countess/) (requires-python:>=3.9) 2024-03-27T05:54:44,150 Skipping link: No binaries permitted for countess: 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https://www.piwheels.org/simple/countess/countess-0.0.11-py3-none-any.whl#sha256=ad5b90dc0b5a2de655f72590dfdcf4fe90c4465151e178f1629a4ec08ad7537b (from https://www.piwheels.org/simple/countess/) 2024-03-27T05:54:44,164 Skipping link: No binaries permitted for countess: https://www.piwheels.org/simple/countess/CountESS-0.0.1-py3-none-any.whl#sha256=951497cf5ac116d98dc3064cb52680af1c2516b71ca1b764178761f85bb61986 (from https://www.piwheels.org/simple/countess/) 2024-03-27T05:54:44,164 Skipping link: not a file: https://www.piwheels.org/simple/countess/ 2024-03-27T05:54:44,165 Skipping link: not a file: https://pypi.org/simple/countess/ 2024-03-27T05:54:44,188 Given no hashes to check 1 links for project 'countess': discarding no candidates 2024-03-27T05:54:44,206 Collecting countess==0.0.53 2024-03-27T05:54:44,208 Created temporary directory: /tmp/pip-unpack-u9kvi01i 2024-03-27T05:54:44,417 Downloading countess-0.0.53.tar.gz (61 kB) 2024-03-27T05:54:44,609 Added countess==0.0.53 from https://files.pythonhosted.org/packages/80/51/44ab0ba5afbb9a48440d3b1986b14b685d0045e1c029a2acd2f7a731fb6b/countess-0.0.53.tar.gz to build tracker '/tmp/pip-build-tracker-t48id2d4' 2024-03-27T05:54:44,615 Created temporary directory: /tmp/pip-build-env-an51o8hx 2024-03-27T05:54:44,619 Installing build dependencies: started 2024-03-27T05:54:44,620 Running command pip subprocess to install build dependencies 2024-03-27T05:54:45,788 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-27T05:54:46,326 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-27T05:54:48,194 Collecting setuptools>=40.8.0 2024-03-27T05:54:48,210 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB) 2024-03-27T05:54:50,899 Installing collected packages: setuptools 2024-03-27T05:54:56,945 Successfully installed setuptools-69.2.0 2024-03-27T05:54:57,524 Installing build dependencies: finished with status 'done' 2024-03-27T05:54:57,527 Getting requirements to build wheel: started 2024-03-27T05:54:57,528 Running command Getting requirements to build wheel 2024-03-27T05:54:58,338 running egg_info 2024-03-27T05:54:58,342 writing countess.egg-info/PKG-INFO 2024-03-27T05:54:58,350 writing dependency_links to countess.egg-info/dependency_links.txt 2024-03-27T05:54:58,353 writing entry points to countess.egg-info/entry_points.txt 2024-03-27T05:54:58,357 writing requirements to countess.egg-info/requires.txt 2024-03-27T05:54:58,359 writing top-level names to countess.egg-info/top_level.txt 2024-03-27T05:54:58,383 reading manifest file 'countess.egg-info/SOURCES.txt' 2024-03-27T05:54:58,387 reading manifest template 'MANIFEST.in' 2024-03-27T05:54:58,389 adding license file 'LICENSE.txt' 2024-03-27T05:54:58,393 writing manifest file 'countess.egg-info/SOURCES.txt' 2024-03-27T05:54:58,507 Getting requirements to build wheel: finished with status 'done' 2024-03-27T05:54:58,515 Installing backend dependencies: started 2024-03-27T05:54:58,516 Running command pip subprocess to install backend dependencies 2024-03-27T05:54:59,675 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-27T05:55:00,203 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-27T05:55:00,735 Collecting wheel 2024-03-27T05:55:00,750 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-03-27T05:55:03,025 Installing collected packages: wheel 2024-03-27T05:55:03,274 Creating /tmp/pip-build-env-an51o8hx/normal/local/bin 2024-03-27T05:55:03,276 changing mode of /tmp/pip-build-env-an51o8hx/normal/local/bin/wheel to 755 2024-03-27T05:55:03,289 Successfully installed wheel-0.43.0 2024-03-27T05:55:04,836 Installing backend dependencies: finished with status 'done' 2024-03-27T05:55:04,838 Created temporary directory: /tmp/pip-modern-metadata-8s2fx32s 2024-03-27T05:55:04,841 Preparing metadata (pyproject.toml): started 2024-03-27T05:55:04,842 Running command Preparing metadata (pyproject.toml) 2024-03-27T05:55:07,320 running dist_info 2024-03-27T05:55:07,540 creating /tmp/pip-modern-metadata-8s2fx32s/countess.egg-info 2024-03-27T05:55:07,546 writing /tmp/pip-modern-metadata-8s2fx32s/countess.egg-info/PKG-INFO 2024-03-27T05:55:07,556 writing dependency_links to /tmp/pip-modern-metadata-8s2fx32s/countess.egg-info/dependency_links.txt 2024-03-27T05:55:07,561 writing entry points to /tmp/pip-modern-metadata-8s2fx32s/countess.egg-info/entry_points.txt 2024-03-27T05:55:07,783 writing requirements to /tmp/pip-modern-metadata-8s2fx32s/countess.egg-info/requires.txt 2024-03-27T05:55:07,789 writing top-level names to /tmp/pip-modern-metadata-8s2fx32s/countess.egg-info/top_level.txt 2024-03-27T05:55:07,791 writing manifest file '/tmp/pip-modern-metadata-8s2fx32s/countess.egg-info/SOURCES.txt' 2024-03-27T05:55:07,823 reading manifest file '/tmp/pip-modern-metadata-8s2fx32s/countess.egg-info/SOURCES.txt' 2024-03-27T05:55:07,825 reading manifest template 'MANIFEST.in' 2024-03-27T05:55:07,829 adding license file 'LICENSE.txt' 2024-03-27T05:55:07,832 writing manifest file '/tmp/pip-modern-metadata-8s2fx32s/countess.egg-info/SOURCES.txt' 2024-03-27T05:55:07,834 creating '/tmp/pip-modern-metadata-8s2fx32s/countess-0.0.53.dist-info' 2024-03-27T05:55:07,997 Preparing metadata (pyproject.toml): finished with status 'done' 2024-03-27T05:55:08,002 Source in /tmp/pip-wheel-4dgnizad/countess_f3316259f6b244df88bc9b9d86b16e01 has version 0.0.53, which satisfies requirement countess==0.0.53 from https://files.pythonhosted.org/packages/80/51/44ab0ba5afbb9a48440d3b1986b14b685d0045e1c029a2acd2f7a731fb6b/countess-0.0.53.tar.gz 2024-03-27T05:55:08,003 Removed countess==0.0.53 from https://files.pythonhosted.org/packages/80/51/44ab0ba5afbb9a48440d3b1986b14b685d0045e1c029a2acd2f7a731fb6b/countess-0.0.53.tar.gz from build tracker '/tmp/pip-build-tracker-t48id2d4' 2024-03-27T05:55:08,008 Created temporary directory: /tmp/pip-unpack-vkb9it2t 2024-03-27T05:55:08,009 Created temporary directory: /tmp/pip-unpack-cu0hjf5l 2024-03-27T05:55:08,052 Building wheels for collected packages: countess 2024-03-27T05:55:08,058 Created temporary directory: /tmp/pip-wheel-pbarv0ur 2024-03-27T05:55:08,058 Destination directory: /tmp/pip-wheel-pbarv0ur 2024-03-27T05:55:08,061 Building wheel for countess (pyproject.toml): started 2024-03-27T05:55:08,062 Running command Building wheel for countess (pyproject.toml) 2024-03-27T05:55:08,841 running bdist_wheel 2024-03-27T05:55:08,862 running build 2024-03-27T05:55:08,862 running build_py 2024-03-27T05:55:08,868 creating build 2024-03-27T05:55:08,868 creating build/lib 2024-03-27T05:55:08,869 creating build/lib/countess 2024-03-27T05:55:08,870 copying countess/__init__.py -> build/lib/countess 2024-03-27T05:55:08,872 creating build/lib/countess/core 2024-03-27T05:55:08,873 copying countess/core/cmd.py -> build/lib/countess/core 2024-03-27T05:55:08,875 copying countess/core/parameters.py -> build/lib/countess/core 2024-03-27T05:55:08,878 copying countess/core/plugins.py -> build/lib/countess/core 2024-03-27T05:55:08,882 copying countess/core/config.py -> build/lib/countess/core 2024-03-27T05:55:08,885 copying countess/core/__init__.py -> build/lib/countess/core 2024-03-27T05:55:08,887 copying countess/core/logger.py -> build/lib/countess/core 2024-03-27T05:55:08,889 copying countess/core/pipeline.py -> build/lib/countess/core 2024-03-27T05:55:08,892 creating build/lib/countess/gui 2024-03-27T05:55:08,893 copying countess/gui/config.py -> build/lib/countess/gui 2024-03-27T05:55:08,895 copying countess/gui/main.py -> build/lib/countess/gui 2024-03-27T05:55:08,898 copying countess/gui/tabular.py -> build/lib/countess/gui 2024-03-27T05:55:08,901 copying countess/gui/__init__.py -> build/lib/countess/gui 2024-03-27T05:55:08,902 copying countess/gui/mini_browser.py -> build/lib/countess/gui 2024-03-27T05:55:08,904 copying countess/gui/logger.py -> build/lib/countess/gui 2024-03-27T05:55:08,906 copying countess/gui/tree.py -> build/lib/countess/gui 2024-03-27T05:55:08,909 copying countess/gui/widgets.py -> build/lib/countess/gui 2024-03-27T05:55:08,912 creating build/lib/countess/plugins 2024-03-27T05:55:08,912 copying countess/plugins/column.py -> build/lib/countess/plugins 2024-03-27T05:55:08,914 copying countess/plugins/correlation.py -> build/lib/countess/plugins 2024-03-27T05:55:08,916 copying countess/plugins/pivot.py -> build/lib/countess/plugins 2024-03-27T05:55:08,918 copying countess/plugins/fastq.py -> build/lib/countess/plugins 2024-03-27T05:55:08,920 copying countess/plugins/regex.py -> build/lib/countess/plugins 2024-03-27T05:55:08,922 copying countess/plugins/__init__.py -> build/lib/countess/plugins 2024-03-27T05:55:08,924 copying countess/plugins/sequence.py -> build/lib/countess/plugins 2024-03-27T05:55:08,926 copying countess/plugins/expression.py -> build/lib/countess/plugins 2024-03-27T05:55:08,928 copying countess/plugins/hgvs_parser.py -> build/lib/countess/plugins 2024-03-27T05:55:08,930 copying countess/plugins/mutagenize.py -> build/lib/countess/plugins 2024-03-27T05:55:08,932 copying countess/plugins/group_by.py -> build/lib/countess/plugins 2024-03-27T05:55:08,934 copying countess/plugins/csv.py -> build/lib/countess/plugins 2024-03-27T05:55:08,937 copying countess/plugins/collate.py -> build/lib/countess/plugins 2024-03-27T05:55:08,939 copying countess/plugins/python.py -> build/lib/countess/plugins 2024-03-27T05:55:08,941 copying countess/plugins/join.py -> build/lib/countess/plugins 2024-03-27T05:55:08,943 copying countess/plugins/data_table.py -> build/lib/countess/plugins 2024-03-27T05:55:08,945 copying countess/plugins/variant.py -> build/lib/countess/plugins 2024-03-27T05:55:08,948 creating build/lib/countess/utils 2024-03-27T05:55:08,949 copying countess/utils/parallel.py -> build/lib/countess/utils 2024-03-27T05:55:08,951 copying countess/utils/__init__.py -> build/lib/countess/utils 2024-03-27T05:55:08,952 copying countess/utils/pandas.py -> build/lib/countess/utils 2024-03-27T05:55:08,954 copying countess/utils/variant.py -> build/lib/countess/utils 2024-03-27T05:55:08,956 running egg_info 2024-03-27T05:55:08,961 writing countess.egg-info/PKG-INFO 2024-03-27T05:55:08,968 writing dependency_links to countess.egg-info/dependency_links.txt 2024-03-27T05:55:08,971 writing entry points to countess.egg-info/entry_points.txt 2024-03-27T05:55:08,974 writing requirements to countess.egg-info/requires.txt 2024-03-27T05:55:08,975 writing top-level names to countess.egg-info/top_level.txt 2024-03-27T05:55:08,987 reading manifest file 'countess.egg-info/SOURCES.txt' 2024-03-27T05:55:08,990 reading manifest template 'MANIFEST.in' 2024-03-27T05:55:08,992 adding license file 'LICENSE.txt' 2024-03-27T05:55:08,996 writing manifest file 'countess.egg-info/SOURCES.txt' 2024-03-27T05:55:08,998 /tmp/pip-build-env-an51o8hx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'countess.gui.icons' is absent from the `packages` configuration. 2024-03-27T05:55:08,999 !! 2024-03-27T05:55:09,000 ******************************************************************************** 2024-03-27T05:55:09,001 ############################ 2024-03-27T05:55:09,001 # Package would be ignored # 2024-03-27T05:55:09,002 ############################ 2024-03-27T05:55:09,002 Python recognizes 'countess.gui.icons' as an importable package[^1], 2024-03-27T05:55:09,003 but it is absent from setuptools' `packages` configuration. 2024-03-27T05:55:09,004 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-27T05:55:09,004 package, please make sure that 'countess.gui.icons' is explicitly added 2024-03-27T05:55:09,005 to the `packages` configuration field. 2024-03-27T05:55:09,006 Alternatively, you can also rely on setuptools' discovery methods 2024-03-27T05:55:09,006 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-27T05:55:09,007 instead of `find_packages(...)`/`find:`). 2024-03-27T05:55:09,008 You can read more about "package discovery" on setuptools documentation page: 2024-03-27T05:55:09,009 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-27T05:55:09,010 If you don't want 'countess.gui.icons' to be distributed and are 2024-03-27T05:55:09,010 already explicitly excluding 'countess.gui.icons' via 2024-03-27T05:55:09,011 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-27T05:55:09,011 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-27T05:55:09,012 combination with a more fine grained `package-data` configuration. 2024-03-27T05:55:09,013 You can read more about "package data files" on setuptools documentation page: 2024-03-27T05:55:09,014 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-27T05:55:09,016 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-27T05:55:09,016 even if it does not contain any `.py` files. 2024-03-27T05:55:09,017 On the other hand, currently there is no concept of package data 2024-03-27T05:55:09,017 directory, all directories are treated like packages. 2024-03-27T05:55:09,018 ******************************************************************************** 2024-03-27T05:55:09,019 !! 2024-03-27T05:55:09,020 check.warn(importable) 2024-03-27T05:55:09,020 copying countess/py.typed -> build/lib/countess 2024-03-27T05:55:09,021 creating build/lib/countess/gui/icons 2024-03-27T05:55:09,021 copying countess/gui/icons/add.gif -> build/lib/countess/gui/icons 2024-03-27T05:55:09,021 copying countess/gui/icons/check.gif -> build/lib/countess/gui/icons 2024-03-27T05:55:09,022 copying countess/gui/icons/del.gif -> build/lib/countess/gui/icons 2024-03-27T05:55:09,022 copying countess/gui/icons/info.gif -> build/lib/countess/gui/icons 2024-03-27T05:55:09,023 copying countess/gui/icons/sort_dn.gif -> build/lib/countess/gui/icons 2024-03-27T05:55:09,023 copying countess/gui/icons/sort_un.gif -> build/lib/countess/gui/icons 2024-03-27T05:55:09,024 copying countess/gui/icons/sort_up.gif -> build/lib/countess/gui/icons 2024-03-27T05:55:09,025 copying countess/gui/icons/uncheck.gif -> build/lib/countess/gui/icons 2024-03-27T05:55:09,038 installing to build/bdist.linux-armv7l/wheel 2024-03-27T05:55:09,039 running install 2024-03-27T05:55:09,063 running install_lib 2024-03-27T05:55:09,068 creating build/bdist.linux-armv7l 2024-03-27T05:55:09,069 creating build/bdist.linux-armv7l/wheel 2024-03-27T05:55:09,071 creating build/bdist.linux-armv7l/wheel/countess 2024-03-27T05:55:09,072 creating build/bdist.linux-armv7l/wheel/countess/utils 2024-03-27T05:55:09,073 copying build/lib/countess/utils/parallel.py -> build/bdist.linux-armv7l/wheel/countess/utils 2024-03-27T05:55:09,075 copying build/lib/countess/utils/__init__.py -> build/bdist.linux-armv7l/wheel/countess/utils 2024-03-27T05:55:09,077 copying build/lib/countess/utils/pandas.py -> build/bdist.linux-armv7l/wheel/countess/utils 2024-03-27T05:55:09,079 copying build/lib/countess/utils/variant.py -> build/bdist.linux-armv7l/wheel/countess/utils 2024-03-27T05:55:09,083 creating build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,084 copying build/lib/countess/plugins/column.py -> build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,086 copying build/lib/countess/plugins/correlation.py -> build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,088 copying build/lib/countess/plugins/pivot.py -> build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,090 copying build/lib/countess/plugins/fastq.py -> build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,092 copying build/lib/countess/plugins/regex.py -> build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,095 copying build/lib/countess/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,096 copying build/lib/countess/plugins/sequence.py -> build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,099 copying build/lib/countess/plugins/expression.py -> build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,101 copying build/lib/countess/plugins/hgvs_parser.py -> build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,103 copying build/lib/countess/plugins/mutagenize.py -> build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,105 copying build/lib/countess/plugins/group_by.py -> build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,107 copying build/lib/countess/plugins/csv.py -> build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,110 copying build/lib/countess/plugins/collate.py -> build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,112 copying build/lib/countess/plugins/python.py -> build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,114 copying build/lib/countess/plugins/join.py -> build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,117 copying build/lib/countess/plugins/data_table.py -> build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,120 copying build/lib/countess/plugins/variant.py -> build/bdist.linux-armv7l/wheel/countess/plugins 2024-03-27T05:55:09,122 copying build/lib/countess/__init__.py -> build/bdist.linux-armv7l/wheel/countess 2024-03-27T05:55:09,125 creating build/bdist.linux-armv7l/wheel/countess/gui 2024-03-27T05:55:09,125 copying build/lib/countess/gui/config.py -> build/bdist.linux-armv7l/wheel/countess/gui 2024-03-27T05:55:09,129 copying build/lib/countess/gui/main.py -> build/bdist.linux-armv7l/wheel/countess/gui 2024-03-27T05:55:09,131 copying build/lib/countess/gui/tabular.py -> build/bdist.linux-armv7l/wheel/countess/gui 2024-03-27T05:55:09,134 copying build/lib/countess/gui/__init__.py -> build/bdist.linux-armv7l/wheel/countess/gui 2024-03-27T05:55:09,135 copying build/lib/countess/gui/mini_browser.py -> build/bdist.linux-armv7l/wheel/countess/gui 2024-03-27T05:55:09,137 copying build/lib/countess/gui/logger.py -> build/bdist.linux-armv7l/wheel/countess/gui 2024-03-27T05:55:09,139 copying build/lib/countess/gui/tree.py -> build/bdist.linux-armv7l/wheel/countess/gui 2024-03-27T05:55:09,143 creating build/bdist.linux-armv7l/wheel/countess/gui/icons 2024-03-27T05:55:09,144 copying build/lib/countess/gui/icons/sort_dn.gif -> build/bdist.linux-armv7l/wheel/countess/gui/icons 2024-03-27T05:55:09,146 copying build/lib/countess/gui/icons/add.gif -> build/bdist.linux-armv7l/wheel/countess/gui/icons 2024-03-27T05:55:09,147 copying build/lib/countess/gui/icons/sort_up.gif -> build/bdist.linux-armv7l/wheel/countess/gui/icons 2024-03-27T05:55:09,149 copying build/lib/countess/gui/icons/sort_un.gif -> build/bdist.linux-armv7l/wheel/countess/gui/icons 2024-03-27T05:55:09,151 copying build/lib/countess/gui/icons/check.gif -> build/bdist.linux-armv7l/wheel/countess/gui/icons 2024-03-27T05:55:09,153 copying build/lib/countess/gui/icons/info.gif -> build/bdist.linux-armv7l/wheel/countess/gui/icons 2024-03-27T05:55:09,155 copying build/lib/countess/gui/icons/uncheck.gif -> build/bdist.linux-armv7l/wheel/countess/gui/icons 2024-03-27T05:55:09,157 copying build/lib/countess/gui/icons/del.gif -> build/bdist.linux-armv7l/wheel/countess/gui/icons 2024-03-27T05:55:09,159 copying build/lib/countess/gui/widgets.py -> build/bdist.linux-armv7l/wheel/countess/gui 2024-03-27T05:55:09,162 creating build/bdist.linux-armv7l/wheel/countess/core 2024-03-27T05:55:09,163 copying build/lib/countess/core/cmd.py -> build/bdist.linux-armv7l/wheel/countess/core 2024-03-27T05:55:09,165 copying build/lib/countess/core/parameters.py -> build/bdist.linux-armv7l/wheel/countess/core 2024-03-27T05:55:09,168 copying build/lib/countess/core/plugins.py -> build/bdist.linux-armv7l/wheel/countess/core 2024-03-27T05:55:09,172 copying build/lib/countess/core/config.py -> build/bdist.linux-armv7l/wheel/countess/core 2024-03-27T05:55:09,174 copying build/lib/countess/core/__init__.py -> build/bdist.linux-armv7l/wheel/countess/core 2024-03-27T05:55:09,176 copying build/lib/countess/core/logger.py -> build/bdist.linux-armv7l/wheel/countess/core 2024-03-27T05:55:09,179 copying build/lib/countess/core/pipeline.py -> build/bdist.linux-armv7l/wheel/countess/core 2024-03-27T05:55:09,181 copying build/lib/countess/py.typed -> build/bdist.linux-armv7l/wheel/countess 2024-03-27T05:55:09,183 running install_egg_info 2024-03-27T05:55:09,188 Copying countess.egg-info to build/bdist.linux-armv7l/wheel/countess-0.0.53-py3.11.egg-info 2024-03-27T05:55:09,202 running install_scripts 2024-03-27T05:55:09,223 creating build/bdist.linux-armv7l/wheel/countess-0.0.53.dist-info/WHEEL 2024-03-27T05:55:09,226 creating '/tmp/pip-wheel-pbarv0ur/.tmp-q4ex1ge1/countess-0.0.53-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-27T05:55:09,229 adding 'countess/__init__.py' 2024-03-27T05:55:09,230 adding 'countess/py.typed' 2024-03-27T05:55:09,232 adding 'countess/core/__init__.py' 2024-03-27T05:55:09,234 adding 'countess/core/cmd.py' 2024-03-27T05:55:09,235 adding 'countess/core/config.py' 2024-03-27T05:55:09,237 adding 'countess/core/logger.py' 2024-03-27T05:55:09,240 adding 'countess/core/parameters.py' 2024-03-27T05:55:09,242 adding 'countess/core/pipeline.py' 2024-03-27T05:55:09,245 adding 'countess/core/plugins.py' 2024-03-27T05:55:09,247 adding 'countess/gui/__init__.py' 2024-03-27T05:55:09,250 adding 'countess/gui/config.py' 2024-03-27T05:55:09,251 adding 'countess/gui/logger.py' 2024-03-27T05:55:09,254 adding 'countess/gui/main.py' 2024-03-27T05:55:09,255 adding 'countess/gui/mini_browser.py' 2024-03-27T05:55:09,258 adding 'countess/gui/tabular.py' 2024-03-27T05:55:09,260 adding 'countess/gui/tree.py' 2024-03-27T05:55:09,262 adding 'countess/gui/widgets.py' 2024-03-27T05:55:09,263 adding 'countess/gui/icons/add.gif' 2024-03-27T05:55:09,264 adding 'countess/gui/icons/check.gif' 2024-03-27T05:55:09,266 adding 'countess/gui/icons/del.gif' 2024-03-27T05:55:09,267 adding 'countess/gui/icons/info.gif' 2024-03-27T05:55:09,268 adding 'countess/gui/icons/sort_dn.gif' 2024-03-27T05:55:09,269 adding 'countess/gui/icons/sort_un.gif' 2024-03-27T05:55:09,270 adding 'countess/gui/icons/sort_up.gif' 2024-03-27T05:55:09,271 adding 'countess/gui/icons/uncheck.gif' 2024-03-27T05:55:09,273 adding 'countess/plugins/__init__.py' 2024-03-27T05:55:09,274 adding 'countess/plugins/collate.py' 2024-03-27T05:55:09,276 adding 'countess/plugins/column.py' 2024-03-27T05:55:09,277 adding 'countess/plugins/correlation.py' 2024-03-27T05:55:09,279 adding 'countess/plugins/csv.py' 2024-03-27T05:55:09,280 adding 'countess/plugins/data_table.py' 2024-03-27T05:55:09,281 adding 'countess/plugins/expression.py' 2024-03-27T05:55:09,283 adding 'countess/plugins/fastq.py' 2024-03-27T05:55:09,284 adding 'countess/plugins/group_by.py' 2024-03-27T05:55:09,285 adding 'countess/plugins/hgvs_parser.py' 2024-03-27T05:55:09,287 adding 'countess/plugins/join.py' 2024-03-27T05:55:09,289 adding 'countess/plugins/mutagenize.py' 2024-03-27T05:55:09,290 adding 'countess/plugins/pivot.py' 2024-03-27T05:55:09,291 adding 'countess/plugins/python.py' 2024-03-27T05:55:09,293 adding 'countess/plugins/regex.py' 2024-03-27T05:55:09,294 adding 'countess/plugins/sequence.py' 2024-03-27T05:55:09,296 adding 'countess/plugins/variant.py' 2024-03-27T05:55:09,298 adding 'countess/utils/__init__.py' 2024-03-27T05:55:09,299 adding 'countess/utils/pandas.py' 2024-03-27T05:55:09,300 adding 'countess/utils/parallel.py' 2024-03-27T05:55:09,303 adding 'countess/utils/variant.py' 2024-03-27T05:55:09,305 adding 'countess-0.0.53.dist-info/LICENSE.txt' 2024-03-27T05:55:09,306 adding 'countess-0.0.53.dist-info/METADATA' 2024-03-27T05:55:09,308 adding 'countess-0.0.53.dist-info/WHEEL' 2024-03-27T05:55:09,309 adding 'countess-0.0.53.dist-info/entry_points.txt' 2024-03-27T05:55:09,310 adding 'countess-0.0.53.dist-info/top_level.txt' 2024-03-27T05:55:09,311 adding 'countess-0.0.53.dist-info/RECORD' 2024-03-27T05:55:09,314 removing build/bdist.linux-armv7l/wheel 2024-03-27T05:55:09,448 Building wheel for countess (pyproject.toml): finished with status 'done' 2024-03-27T05:55:09,455 Created wheel for countess: filename=countess-0.0.53-py3-none-any.whl size=75302 sha256=b49e7c02f39d9331b9dc5b0a80ef59302d97bbd2f2bd3b5236ef98f6ef0eadce 2024-03-27T05:55:09,456 Stored in directory: /tmp/pip-ephem-wheel-cache-ou834ear/wheels/d7/5a/f5/0083bf5e1b383abcd81785e98eefafae9ebe5fad061975de49 2024-03-27T05:55:09,469 Successfully built countess 2024-03-27T05:55:09,475 Removed build tracker: '/tmp/pip-build-tracker-t48id2d4'