2024-04-12T19:48:12,432 Created temporary directory: /tmp/pip-build-tracker-gtzp3pp7 2024-04-12T19:48:12,433 Initialized build tracking at /tmp/pip-build-tracker-gtzp3pp7 2024-04-12T19:48:12,434 Created build tracker: /tmp/pip-build-tracker-gtzp3pp7 2024-04-12T19:48:12,434 Entered build tracker: /tmp/pip-build-tracker-gtzp3pp7 2024-04-12T19:48:12,436 Created temporary directory: /tmp/pip-wheel-jh1od826 2024-04-12T19:48:12,439 Created temporary directory: /tmp/pip-ephem-wheel-cache-vqxintyz 2024-04-12T19:48:12,461 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-12T19:48:12,465 2 location(s) to search for versions of simbio: 2024-04-12T19:48:12,465 * https://pypi.org/simple/simbio/ 2024-04-12T19:48:12,465 * https://www.piwheels.org/simple/simbio/ 2024-04-12T19:48:12,466 Fetching project page and analyzing links: https://pypi.org/simple/simbio/ 2024-04-12T19:48:12,467 Getting page https://pypi.org/simple/simbio/ 2024-04-12T19:48:12,468 Found index url https://pypi.org/simple/ 2024-04-12T19:48:12,687 Fetched page https://pypi.org/simple/simbio/ as application/vnd.pypi.simple.v1+json 2024-04-12T19:48:12,691 Skipping link: No binaries permitted for simbio: https://files.pythonhosted.org/packages/ce/04/a5799d8efa770e77df0e46d1d2b371569d8e51c2d47f1c26a2c4af7c8743/SimBio-0.1.0-py3-none-any.whl (from https://pypi.org/simple/simbio/) (requires-python:>=3.7) 2024-04-12T19:48:12,692 Found link https://files.pythonhosted.org/packages/7d/d1/3f550deb1d612266c606557c360a7b0fcede712c34e155f55d353191333e/SimBio-0.1.0.tar.gz (from https://pypi.org/simple/simbio/) (requires-python:>=3.7), version: 0.1.0 2024-04-12T19:48:12,693 Skipping link: No binaries permitted for simbio: https://files.pythonhosted.org/packages/0c/db/4ea33d2dda7662fcb3629fd1f34381e091184eff104e3d96549444f1b9aa/SimBio-0.1.1-py3-none-any.whl (from https://pypi.org/simple/simbio/) (requires-python:>=3.7) 2024-04-12T19:48:12,694 Found link https://files.pythonhosted.org/packages/7e/21/de6de3430913e79cde0d02130d0be1078b6c0ebe438c79af0c73f3dc2949/SimBio-0.1.1.tar.gz (from https://pypi.org/simple/simbio/) (requires-python:>=3.7), version: 0.1.1 2024-04-12T19:48:12,695 Skipping link: No binaries permitted for simbio: https://files.pythonhosted.org/packages/5a/4b/53116e4a05e5d28966de9f8ba316acd2eae8895089d062463b608a6bc014/SimBio-0.2.0-py3-none-any.whl (from https://pypi.org/simple/simbio/) (requires-python:>=3.10) 2024-04-12T19:48:12,696 Found link https://files.pythonhosted.org/packages/7f/cd/ada42bdb6c877f771169e853041da9c550018db740f4ee132dfff0779a0a/SimBio-0.2.0.tar.gz (from https://pypi.org/simple/simbio/) (requires-python:>=3.10), version: 0.2.0 2024-04-12T19:48:12,696 Skipping link: No binaries permitted for simbio: https://files.pythonhosted.org/packages/6e/6e/edbe68001ce89e580251025e8db1e748a8c68ef7d54a085423fa1db7f46c/SimBio-0.2.1-py3-none-any.whl (from https://pypi.org/simple/simbio/) (requires-python:>=3.10) 2024-04-12T19:48:12,697 Found link https://files.pythonhosted.org/packages/fa/43/78b338da8a44f9bb2ced7495aa849956b564498de300d01aa67428cad85d/SimBio-0.2.1.tar.gz (from https://pypi.org/simple/simbio/) (requires-python:>=3.10), version: 0.2.1 2024-04-12T19:48:12,698 Skipping link: No binaries permitted for simbio: https://files.pythonhosted.org/packages/15/f9/39fa5460af3b3746db693b448e00727879007fc8a688b72bb3759e873c28/SimBio-0.2.2-py3-none-any.whl (from https://pypi.org/simple/simbio/) (requires-python:>=3.10) 2024-04-12T19:48:12,699 Found link https://files.pythonhosted.org/packages/bd/e5/79e1af3a39eb3e10a55a1860b9a127fa0c3af42007912ea244f5aaf6d9df/SimBio-0.2.2.tar.gz (from https://pypi.org/simple/simbio/) (requires-python:>=3.10), version: 0.2.2 2024-04-12T19:48:12,700 Skipping link: No binaries permitted for simbio: https://files.pythonhosted.org/packages/7b/ac/f146c85aa9a31ebcc107ed257813db0502f9b9a751787a61de9307c74ad8/SimBio-0.2.3-py3-none-any.whl (from https://pypi.org/simple/simbio/) (requires-python:>=3.10) 2024-04-12T19:48:12,701 Found link https://files.pythonhosted.org/packages/06/70/e68dcf530277688e369e123dd5344cee79720df715cf0ffea62d5f45bc87/SimBio-0.2.3.tar.gz (from https://pypi.org/simple/simbio/) (requires-python:>=3.10), version: 0.2.3 2024-04-12T19:48:12,702 Skipping link: No binaries permitted for simbio: https://files.pythonhosted.org/packages/c0/b2/dce699d4f69f740d81bd7d85c2e33b1990759bea93b805220d62e5d5b629/SimBio-0.3.0-py3-none-any.whl (from https://pypi.org/simple/simbio/) (requires-python:>=3.10) 2024-04-12T19:48:12,703 Found link https://files.pythonhosted.org/packages/39/ab/a79d9c98bcfa3484962107633edbbe8b9f8fd5207cf0ff2eef969a9e1a97/SimBio-0.3.0.tar.gz (from https://pypi.org/simple/simbio/) (requires-python:>=3.10), version: 0.3.0 2024-04-12T19:48:12,704 Skipping link: No binaries permitted for simbio: https://files.pythonhosted.org/packages/5c/ef/5e443f386bc9b155ead89253700de395d08e5d825006bd7f33c7d85df94c/SimBio-0.3.1-py3-none-any.whl (from https://pypi.org/simple/simbio/) (requires-python:>=3.10) 2024-04-12T19:48:12,704 Found link https://files.pythonhosted.org/packages/17/cf/439a51fd7606ad7af44c2b5ecccaf4533712c16a8838f7321428dcfa4845/SimBio-0.3.1.tar.gz (from https://pypi.org/simple/simbio/) (requires-python:>=3.10), version: 0.3.1 2024-04-12T19:48:12,705 Skipping link: No binaries permitted for simbio: https://files.pythonhosted.org/packages/13/c1/daeb539ee9410244143bf830d56e5dc2f79c48e39ee80400d015a2ed0bae/SimBio-0.3.2-py3-none-any.whl (from https://pypi.org/simple/simbio/) (requires-python:>=3.10) 2024-04-12T19:48:12,706 Found link https://files.pythonhosted.org/packages/e2/eb/78af65f59760b1426659b16c0e843d96d2802946d459d4414fb5403e31e1/SimBio-0.3.2.tar.gz (from https://pypi.org/simple/simbio/) (requires-python:>=3.10), version: 0.3.2 2024-04-12T19:48:12,706 Skipping link: No binaries permitted for simbio: https://files.pythonhosted.org/packages/8c/6f/8702ef324cf2e176949384522005af9d8ba9a2a198e3d0fa7f5c45559fa7/SimBio-0.4.0-py3-none-any.whl (from https://pypi.org/simple/simbio/) (requires-python:>=3.10) 2024-04-12T19:48:12,707 Found link https://files.pythonhosted.org/packages/f4/e1/0699a58f39f10dfa2f2e715ebbfb0d32fe603895ddb557a3db919e195025/simbio-0.4.tar.gz (from https://pypi.org/simple/simbio/) (requires-python:>=3.10), version: 0.4 2024-04-12T19:48:12,708 Fetching project page and analyzing links: https://www.piwheels.org/simple/simbio/ 2024-04-12T19:48:12,709 Getting page https://www.piwheels.org/simple/simbio/ 2024-04-12T19:48:12,710 Found index url https://www.piwheels.org/simple/ 2024-04-12T19:48:13,549 Fetched page https://www.piwheels.org/simple/simbio/ as text/html 2024-04-12T19:48:13,557 Skipping link: No binaries permitted for simbio: https://www.piwheels.org/simple/simbio/SimBio-0.3.2-py3-none-any.whl#sha256=a88fcae9c8d8b9d1d295b7a7f7cdcaf3240a91d5a6adc5193cf1c65d8d2dc230 (from https://www.piwheels.org/simple/simbio/) (requires-python:>=3.10) 2024-04-12T19:48:13,558 Skipping link: No binaries permitted for simbio: https://www.piwheels.org/simple/simbio/SimBio-0.3.1-py3-none-any.whl#sha256=6d75d8855b08c5e99adb6956ae9569de7d14cea49110c8c5e17422fa676016c2 (from https://www.piwheels.org/simple/simbio/) (requires-python:>=3.10) 2024-04-12T19:48:13,559 Skipping link: No binaries permitted for simbio: https://www.piwheels.org/simple/simbio/SimBio-0.3.0-py3-none-any.whl#sha256=050ae27f0837964d14260d11b412133bb21a7cfa09ebd21a8051f7284ecddb40 (from https://www.piwheels.org/simple/simbio/) (requires-python:>=3.10) 2024-04-12T19:48:13,560 Skipping link: No binaries permitted for simbio: https://www.piwheels.org/simple/simbio/SimBio-0.2.3-py3-none-any.whl#sha256=0d218be26977a711fba9cfd823c53c898d0bb241497a6efb6753399a408a0ed8 (from https://www.piwheels.org/simple/simbio/) (requires-python:>=3.10) 2024-04-12T19:48:13,561 Skipping link: No binaries permitted for simbio: https://www.piwheels.org/simple/simbio/SimBio-0.2.2-py3-none-any.whl#sha256=c6aaa20bd5f6dea08d14712ce18ffeb58b52116cde1a42689403dc7029a03e22 (from https://www.piwheels.org/simple/simbio/) (requires-python:>=3.10) 2024-04-12T19:48:13,561 Skipping link: No binaries permitted for simbio: https://www.piwheels.org/simple/simbio/SimBio-0.2.1-py3-none-any.whl#sha256=d688b5e17917486a350fd0c6abbef66a4773e5d87b6dfcc6372da20b43298716 (from https://www.piwheels.org/simple/simbio/) (requires-python:>=3.10) 2024-04-12T19:48:13,562 Skipping link: No binaries permitted for simbio: https://www.piwheels.org/simple/simbio/SimBio-0.2.0-py3-none-any.whl#sha256=5f22ee3b8aa95c591f35506ba9fb24a3b5100aec8364fef9e5306dc1bbe07ab4 (from https://www.piwheels.org/simple/simbio/) (requires-python:>=3.10) 2024-04-12T19:48:13,564 Skipping link: No binaries permitted for simbio: https://www.piwheels.org/simple/simbio/SimBio-0.1.1-py3-none-any.whl#sha256=705dc3e27dbe0d5ff44a4f7b79fcf3b2ee40d348ac8435052f2f9a83296df483 (from https://www.piwheels.org/simple/simbio/) (requires-python:>=3.7) 2024-04-12T19:48:13,565 Skipping link: No binaries permitted for simbio: https://www.piwheels.org/simple/simbio/SimBio-0.1.0-py3-none-any.whl#sha256=362bc012c5696704451393707ad222a32b7ebd37aeca463bb4e5ba998c722e3c (from https://www.piwheels.org/simple/simbio/) (requires-python:>=3.7) 2024-04-12T19:48:13,566 Skipping link: not a file: https://www.piwheels.org/simple/simbio/ 2024-04-12T19:48:13,566 Skipping link: not a file: https://pypi.org/simple/simbio/ 2024-04-12T19:48:13,607 Given no hashes to check 1 links for project 'simbio': discarding no candidates 2024-04-12T19:48:13,631 Collecting simbio==0.4.0 2024-04-12T19:48:13,634 Created temporary directory: /tmp/pip-unpack-vfvgize1 2024-04-12T19:48:13,847 Downloading simbio-0.4.tar.gz (40 kB) 2024-04-12T19:48:14,021 Added simbio==0.4.0 from https://files.pythonhosted.org/packages/f4/e1/0699a58f39f10dfa2f2e715ebbfb0d32fe603895ddb557a3db919e195025/simbio-0.4.tar.gz to build tracker '/tmp/pip-build-tracker-gtzp3pp7' 2024-04-12T19:48:14,027 Created temporary directory: /tmp/pip-build-env-ae8hz46n 2024-04-12T19:48:14,032 Installing build dependencies: started 2024-04-12T19:48:14,033 Running command pip subprocess to install build dependencies 2024-04-12T19:48:15,252 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-04-12T19:48:16,044 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-12T19:48:17,506 Collecting setuptools 2024-04-12T19:48:17,557 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.4.0-py3-none-any.whl (823 kB) 2024-04-12T19:48:18,049 Collecting setuptools-scm 2024-04-12T19:48:18,065 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB) 2024-04-12T19:48:18,872 Collecting packaging>=20 (from setuptools-scm) 2024-04-12T19:48:18,888 Using cached https://www.piwheels.org/simple/packaging/packaging-24.0-py3-none-any.whl (53 kB) 2024-04-12T19:48:19,018 Collecting typing-extensions (from setuptools-scm) 2024-04-12T19:48:19,033 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.11.0-py3-none-any.whl (34 kB) 2024-04-12T19:48:21,564 Installing collected packages: typing-extensions, setuptools, packaging, setuptools-scm 2024-04-12T19:48:24,619 Successfully installed packaging-24.0 setuptools-69.4.0 setuptools-scm-8.0.4 typing-extensions-4.11.0 2024-04-12T19:48:25,212 Installing build dependencies: finished with status 'done' 2024-04-12T19:48:25,216 Getting requirements to build wheel: started 2024-04-12T19:48:25,217 Running command Getting requirements to build wheel 2024-04-12T19:48:26,120 /tmp/pip-build-env-ae8hz46n/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:133: SetuptoolsWarning: File '/tmp/pip-wheel-jh1od826/simbio_903b7deb89c74b0281d11bcc87450bc1/LICENSE' cannot be found 2024-04-12T19:48:26,120 return '\n'.join( 2024-04-12T19:48:26,384 running egg_info 2024-04-12T19:48:26,390 writing src/SimBio.egg-info/PKG-INFO 2024-04-12T19:48:26,397 writing dependency_links to src/SimBio.egg-info/dependency_links.txt 2024-04-12T19:48:26,401 writing requirements to src/SimBio.egg-info/requires.txt 2024-04-12T19:48:26,402 writing top-level names to src/SimBio.egg-info/top_level.txt 2024-04-12T19:48:26,444 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-04-12T19:48:26,447 reading manifest file 'src/SimBio.egg-info/SOURCES.txt' 2024-04-12T19:48:26,457 writing manifest file 'src/SimBio.egg-info/SOURCES.txt' 2024-04-12T19:48:26,574 Getting requirements to build wheel: finished with status 'done' 2024-04-12T19:48:26,587 Installing backend dependencies: started 2024-04-12T19:48:26,588 Running command pip subprocess to install backend dependencies 2024-04-12T19:48:28,029 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-04-12T19:48:28,565 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-12T19:48:29,666 Collecting wheel 2024-04-12T19:48:29,679 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-04-12T19:48:31,944 Installing collected packages: wheel 2024-04-12T19:48:32,216 Creating /tmp/pip-build-env-ae8hz46n/normal/local/bin 2024-04-12T19:48:32,218 changing mode of /tmp/pip-build-env-ae8hz46n/normal/local/bin/wheel to 755 2024-04-12T19:48:32,230 Successfully installed wheel-0.43.0 2024-04-12T19:48:32,764 Installing backend dependencies: finished with status 'done' 2024-04-12T19:48:32,766 Created temporary directory: /tmp/pip-modern-metadata-ct33pbdo 2024-04-12T19:48:32,768 Preparing metadata (pyproject.toml): started 2024-04-12T19:48:32,769 Running command Preparing metadata (pyproject.toml) 2024-04-12T19:48:33,377 /tmp/pip-build-env-ae8hz46n/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:133: SetuptoolsWarning: File '/tmp/pip-wheel-jh1od826/simbio_903b7deb89c74b0281d11bcc87450bc1/LICENSE' cannot be found 2024-04-12T19:48:33,377 return '\n'.join( 2024-04-12T19:48:33,900 running dist_info 2024-04-12T19:48:33,906 creating /tmp/pip-modern-metadata-ct33pbdo/SimBio.egg-info 2024-04-12T19:48:33,911 writing /tmp/pip-modern-metadata-ct33pbdo/SimBio.egg-info/PKG-INFO 2024-04-12T19:48:33,919 writing dependency_links to /tmp/pip-modern-metadata-ct33pbdo/SimBio.egg-info/dependency_links.txt 2024-04-12T19:48:33,923 writing requirements to /tmp/pip-modern-metadata-ct33pbdo/SimBio.egg-info/requires.txt 2024-04-12T19:48:33,924 writing top-level names to /tmp/pip-modern-metadata-ct33pbdo/SimBio.egg-info/top_level.txt 2024-04-12T19:48:33,926 writing manifest file '/tmp/pip-modern-metadata-ct33pbdo/SimBio.egg-info/SOURCES.txt' 2024-04-12T19:48:33,968 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-04-12T19:48:33,971 reading manifest file '/tmp/pip-modern-metadata-ct33pbdo/SimBio.egg-info/SOURCES.txt' 2024-04-12T19:48:33,976 writing manifest file '/tmp/pip-modern-metadata-ct33pbdo/SimBio.egg-info/SOURCES.txt' 2024-04-12T19:48:33,977 creating '/tmp/pip-modern-metadata-ct33pbdo/SimBio-0.4.0.dist-info' 2024-04-12T19:48:34,132 Preparing metadata (pyproject.toml): finished with status 'done' 2024-04-12T19:48:34,137 Source in /tmp/pip-wheel-jh1od826/simbio_903b7deb89c74b0281d11bcc87450bc1 has version 0.4.0, which satisfies requirement simbio==0.4.0 from https://files.pythonhosted.org/packages/f4/e1/0699a58f39f10dfa2f2e715ebbfb0d32fe603895ddb557a3db919e195025/simbio-0.4.tar.gz 2024-04-12T19:48:34,138 Removed simbio==0.4.0 from https://files.pythonhosted.org/packages/f4/e1/0699a58f39f10dfa2f2e715ebbfb0d32fe603895ddb557a3db919e195025/simbio-0.4.tar.gz from build tracker '/tmp/pip-build-tracker-gtzp3pp7' 2024-04-12T19:48:34,144 Created temporary directory: /tmp/pip-unpack-ayiqfsrb 2024-04-12T19:48:34,145 Created temporary directory: /tmp/pip-unpack-go8gf351 2024-04-12T19:48:34,178 Building wheels for collected packages: simbio 2024-04-12T19:48:34,182 Created temporary directory: /tmp/pip-wheel-mviyos1k 2024-04-12T19:48:34,183 Destination directory: /tmp/pip-wheel-mviyos1k 2024-04-12T19:48:34,185 Building wheel for simbio (pyproject.toml): started 2024-04-12T19:48:34,186 Running command Building wheel for simbio (pyproject.toml) 2024-04-12T19:48:34,733 /tmp/pip-build-env-ae8hz46n/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:133: SetuptoolsWarning: File '/tmp/pip-wheel-jh1od826/simbio_903b7deb89c74b0281d11bcc87450bc1/LICENSE' cannot be found 2024-04-12T19:48:34,733 return '\n'.join( 2024-04-12T19:48:35,011 running bdist_wheel 2024-04-12T19:48:35,035 running build 2024-04-12T19:48:35,036 running build_py 2024-04-12T19:48:35,042 creating build 2024-04-12T19:48:35,043 creating build/lib 2024-04-12T19:48:35,044 creating build/lib/simbio 2024-04-12T19:48:35,046 copying src/simbio/__init__.py -> build/lib/simbio 2024-04-12T19:48:35,050 copying src/simbio/core.py -> build/lib/simbio 2024-04-12T19:48:35,056 copying src/simbio/test_core.py -> build/lib/simbio 2024-04-12T19:48:35,058 creating build/lib/simbio/io 2024-04-12T19:48:35,059 copying src/simbio/io/biomodels.py -> build/lib/simbio/io 2024-04-12T19:48:35,062 creating build/lib/simbio/reactions 2024-04-12T19:48:35,062 copying src/simbio/reactions/test_reactions.py -> build/lib/simbio/reactions 2024-04-12T19:48:35,064 copying src/simbio/reactions/enzymatic.py -> build/lib/simbio/reactions 2024-04-12T19:48:35,066 copying src/simbio/reactions/__init__.py -> build/lib/simbio/reactions 2024-04-12T19:48:35,067 copying src/simbio/reactions/single.py -> build/lib/simbio/reactions 2024-04-12T19:48:35,069 copying src/simbio/reactions/compound.py -> build/lib/simbio/reactions 2024-04-12T19:48:35,072 creating build/lib/simbio/io/sbml 2024-04-12T19:48:35,072 copying src/simbio/io/sbml/types.py -> build/lib/simbio/io/sbml 2024-04-12T19:48:35,075 copying src/simbio/io/sbml/__init__.py -> build/lib/simbio/io/sbml 2024-04-12T19:48:35,076 copying src/simbio/io/sbml/from_libsbml.py -> build/lib/simbio/io/sbml 2024-04-12T19:48:35,079 copying src/simbio/io/sbml/test_importer.py -> build/lib/simbio/io/sbml 2024-04-12T19:48:35,082 copying src/simbio/io/sbml/importer.py -> build/lib/simbio/io/sbml 2024-04-12T19:48:35,086 creating build/lib/simbio/io/mathML 2024-04-12T19:48:35,087 copying src/simbio/io/mathML/exporter.py -> build/lib/simbio/io/mathML 2024-04-12T19:48:35,091 copying src/simbio/io/mathML/test_mathML.py -> build/lib/simbio/io/mathML 2024-04-12T19:48:35,094 copying src/simbio/io/mathML/to_symbolite.py -> build/lib/simbio/io/mathML 2024-04-12T19:48:35,096 copying src/simbio/io/mathML/__init__.py -> build/lib/simbio/io/mathML 2024-04-12T19:48:35,099 copying src/simbio/io/mathML/importer.py -> build/lib/simbio/io/mathML 2024-04-12T19:48:35,102 copying src/simbio/io/mathML/symbol.py -> build/lib/simbio/io/mathML 2024-04-12T19:48:35,104 creating build/lib/simbio/io/sbml/tests 2024-04-12T19:48:35,105 copying src/simbio/io/sbml/tests/test_sbml_test_suite.py -> build/lib/simbio/io/sbml/tests 2024-04-12T19:48:35,108 running egg_info 2024-04-12T19:48:35,113 writing src/SimBio.egg-info/PKG-INFO 2024-04-12T19:48:35,119 writing dependency_links to src/SimBio.egg-info/dependency_links.txt 2024-04-12T19:48:35,122 writing requirements to src/SimBio.egg-info/requires.txt 2024-04-12T19:48:35,123 writing top-level names to src/SimBio.egg-info/top_level.txt 2024-04-12T19:48:35,152 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-04-12T19:48:35,155 reading manifest file 'src/SimBio.egg-info/SOURCES.txt' 2024-04-12T19:48:35,164 writing manifest file 'src/SimBio.egg-info/SOURCES.txt' 2024-04-12T19:48:35,169 copying src/simbio/io/sbml/tests/atol_factor.csv -> build/lib/simbio/io/sbml/tests 2024-04-12T19:48:35,183 installing to build/bdist.linux-armv7l/wheel 2024-04-12T19:48:35,183 running install 2024-04-12T19:48:35,207 running install_lib 2024-04-12T19:48:35,212 creating build/bdist.linux-armv7l 2024-04-12T19:48:35,213 creating build/bdist.linux-armv7l/wheel 2024-04-12T19:48:35,215 creating build/bdist.linux-armv7l/wheel/simbio 2024-04-12T19:48:35,216 copying build/lib/simbio/__init__.py -> build/bdist.linux-armv7l/wheel/simbio 2024-04-12T19:48:35,218 creating build/bdist.linux-armv7l/wheel/simbio/io 2024-04-12T19:48:35,220 creating build/bdist.linux-armv7l/wheel/simbio/io/sbml 2024-04-12T19:48:35,221 copying build/lib/simbio/io/sbml/types.py -> build/bdist.linux-armv7l/wheel/simbio/io/sbml 2024-04-12T19:48:35,223 creating build/bdist.linux-armv7l/wheel/simbio/io/sbml/tests 2024-04-12T19:48:35,224 copying build/lib/simbio/io/sbml/tests/test_sbml_test_suite.py -> build/bdist.linux-armv7l/wheel/simbio/io/sbml/tests 2024-04-12T19:48:35,227 copying build/lib/simbio/io/sbml/tests/atol_factor.csv -> build/bdist.linux-armv7l/wheel/simbio/io/sbml/tests 2024-04-12T19:48:35,228 copying build/lib/simbio/io/sbml/__init__.py -> build/bdist.linux-armv7l/wheel/simbio/io/sbml 2024-04-12T19:48:35,230 copying build/lib/simbio/io/sbml/from_libsbml.py -> build/bdist.linux-armv7l/wheel/simbio/io/sbml 2024-04-12T19:48:35,233 copying build/lib/simbio/io/sbml/test_importer.py -> build/bdist.linux-armv7l/wheel/simbio/io/sbml 2024-04-12T19:48:35,235 copying build/lib/simbio/io/sbml/importer.py -> build/bdist.linux-armv7l/wheel/simbio/io/sbml 2024-04-12T19:48:35,239 creating build/bdist.linux-armv7l/wheel/simbio/io/mathML 2024-04-12T19:48:35,240 copying build/lib/simbio/io/mathML/exporter.py -> build/bdist.linux-armv7l/wheel/simbio/io/mathML 2024-04-12T19:48:35,243 copying build/lib/simbio/io/mathML/test_mathML.py -> build/bdist.linux-armv7l/wheel/simbio/io/mathML 2024-04-12T19:48:35,244 copying build/lib/simbio/io/mathML/to_symbolite.py -> build/bdist.linux-armv7l/wheel/simbio/io/mathML 2024-04-12T19:48:35,246 copying build/lib/simbio/io/mathML/__init__.py -> build/bdist.linux-armv7l/wheel/simbio/io/mathML 2024-04-12T19:48:35,248 copying build/lib/simbio/io/mathML/importer.py -> build/bdist.linux-armv7l/wheel/simbio/io/mathML 2024-04-12T19:48:35,250 copying build/lib/simbio/io/mathML/symbol.py -> build/bdist.linux-armv7l/wheel/simbio/io/mathML 2024-04-12T19:48:35,252 copying build/lib/simbio/io/biomodels.py -> build/bdist.linux-armv7l/wheel/simbio/io 2024-04-12T19:48:35,253 copying build/lib/simbio/core.py -> build/bdist.linux-armv7l/wheel/simbio 2024-04-12T19:48:35,255 copying build/lib/simbio/test_core.py -> build/bdist.linux-armv7l/wheel/simbio 2024-04-12T19:48:35,258 creating build/bdist.linux-armv7l/wheel/simbio/reactions 2024-04-12T19:48:35,259 copying build/lib/simbio/reactions/test_reactions.py -> build/bdist.linux-armv7l/wheel/simbio/reactions 2024-04-12T19:48:35,261 copying build/lib/simbio/reactions/enzymatic.py -> build/bdist.linux-armv7l/wheel/simbio/reactions 2024-04-12T19:48:35,263 copying build/lib/simbio/reactions/__init__.py -> build/bdist.linux-armv7l/wheel/simbio/reactions 2024-04-12T19:48:35,265 copying build/lib/simbio/reactions/single.py -> build/bdist.linux-armv7l/wheel/simbio/reactions 2024-04-12T19:48:35,267 copying build/lib/simbio/reactions/compound.py -> build/bdist.linux-armv7l/wheel/simbio/reactions 2024-04-12T19:48:35,268 running install_egg_info 2024-04-12T19:48:35,273 Copying src/SimBio.egg-info to build/bdist.linux-armv7l/wheel/SimBio-0.4.0-py3.11.egg-info 2024-04-12T19:48:35,284 running install_scripts 2024-04-12T19:48:35,298 creating build/bdist.linux-armv7l/wheel/SimBio-0.4.0.dist-info/WHEEL 2024-04-12T19:48:35,300 creating '/tmp/pip-wheel-mviyos1k/.tmp-b8o0ksur/SimBio-0.4.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-12T19:48:35,303 adding 'simbio/__init__.py' 2024-04-12T19:48:35,305 adding 'simbio/core.py' 2024-04-12T19:48:35,307 adding 'simbio/test_core.py' 2024-04-12T19:48:35,309 adding 'simbio/io/biomodels.py' 2024-04-12T19:48:35,311 adding 'simbio/io/mathML/__init__.py' 2024-04-12T19:48:35,312 adding 'simbio/io/mathML/exporter.py' 2024-04-12T19:48:35,314 adding 'simbio/io/mathML/importer.py' 2024-04-12T19:48:35,316 adding 'simbio/io/mathML/symbol.py' 2024-04-12T19:48:35,317 adding 'simbio/io/mathML/test_mathML.py' 2024-04-12T19:48:35,318 adding 'simbio/io/mathML/to_symbolite.py' 2024-04-12T19:48:35,320 adding 'simbio/io/sbml/__init__.py' 2024-04-12T19:48:35,322 adding 'simbio/io/sbml/from_libsbml.py' 2024-04-12T19:48:35,324 adding 'simbio/io/sbml/importer.py' 2024-04-12T19:48:35,326 adding 'simbio/io/sbml/test_importer.py' 2024-04-12T19:48:35,327 adding 'simbio/io/sbml/types.py' 2024-04-12T19:48:35,329 adding 'simbio/io/sbml/tests/atol_factor.csv' 2024-04-12T19:48:35,331 adding 'simbio/io/sbml/tests/test_sbml_test_suite.py' 2024-04-12T19:48:35,332 adding 'simbio/reactions/__init__.py' 2024-04-12T19:48:35,334 adding 'simbio/reactions/compound.py' 2024-04-12T19:48:35,335 adding 'simbio/reactions/enzymatic.py' 2024-04-12T19:48:35,336 adding 'simbio/reactions/single.py' 2024-04-12T19:48:35,338 adding 'simbio/reactions/test_reactions.py' 2024-04-12T19:48:35,339 adding 'SimBio-0.4.0.dist-info/METADATA' 2024-04-12T19:48:35,340 adding 'SimBio-0.4.0.dist-info/WHEEL' 2024-04-12T19:48:35,341 adding 'SimBio-0.4.0.dist-info/top_level.txt' 2024-04-12T19:48:35,342 adding 'SimBio-0.4.0.dist-info/RECORD' 2024-04-12T19:48:35,344 removing build/bdist.linux-armv7l/wheel 2024-04-12T19:48:35,496 Building wheel for simbio (pyproject.toml): finished with status 'done' 2024-04-12T19:48:35,501 Created wheel for simbio: filename=SimBio-0.4.0-py3-none-any.whl size=29021 sha256=b9d65c48ea4f9bc81a755d467aa74089d8804171ddfaf739327fc456c1f068e6 2024-04-12T19:48:35,502 Stored in directory: /tmp/pip-ephem-wheel-cache-vqxintyz/wheels/86/34/02/9e15201e0eb3d459be5969b2f7ac6af61a3e436a283d09c93b 2024-04-12T19:48:35,513 Successfully built simbio 2024-04-12T19:48:35,517 Removed build tracker: '/tmp/pip-build-tracker-gtzp3pp7'