2024-05-07T17:05:12,843 Created temporary directory: /tmp/pip-build-tracker-p0mbil5_ 2024-05-07T17:05:12,844 Initialized build tracking at /tmp/pip-build-tracker-p0mbil5_ 2024-05-07T17:05:12,845 Created build tracker: /tmp/pip-build-tracker-p0mbil5_ 2024-05-07T17:05:12,845 Entered build tracker: /tmp/pip-build-tracker-p0mbil5_ 2024-05-07T17:05:12,846 Created temporary directory: /tmp/pip-wheel-7gosg722 2024-05-07T17:05:12,849 Created temporary directory: /tmp/pip-ephem-wheel-cache-xyzw953_ 2024-05-07T17:05:12,871 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-07T17:05:12,875 2 location(s) to search for versions of syntheseus: 2024-05-07T17:05:12,875 * https://pypi.org/simple/syntheseus/ 2024-05-07T17:05:12,875 * https://www.piwheels.org/simple/syntheseus/ 2024-05-07T17:05:12,875 Fetching project page and analyzing links: https://pypi.org/simple/syntheseus/ 2024-05-07T17:05:12,876 Getting page https://pypi.org/simple/syntheseus/ 2024-05-07T17:05:12,878 Found index url https://pypi.org/simple/ 2024-05-07T17:05:13,097 Fetched page https://pypi.org/simple/syntheseus/ as application/vnd.pypi.simple.v1+json 2024-05-07T17:05:13,099 Skipping link: No binaries permitted for syntheseus: https://files.pythonhosted.org/packages/72/25/d38f1b08e3113fcfc912158350c8d7b0150b98a3e1ab1ae2a4754e7c0d39/syntheseus-0.3.0-py3-none-any.whl (from https://pypi.org/simple/syntheseus/) (requires-python:>=3.7) 2024-05-07T17:05:13,100 Found link https://files.pythonhosted.org/packages/6f/05/55f01918e2c389864c5182d1452293afe24211549dab3bdca9525bdce9d2/syntheseus-0.3.0.tar.gz (from https://pypi.org/simple/syntheseus/) (requires-python:>=3.7), version: 0.3.0 2024-05-07T17:05:13,101 Skipping link: No binaries permitted for syntheseus: https://files.pythonhosted.org/packages/59/73/d46b461214805bbcef8956abf7e120f56cea7bd425a7c8c263c760c11cc8/syntheseus-0.4.0-py3-none-any.whl (from https://pypi.org/simple/syntheseus/) (requires-python:>=3.7) 2024-05-07T17:05:13,102 Found link https://files.pythonhosted.org/packages/da/a2/4a9d7050cd6fd16615e88a344da4c8e09996d14702f14d0ea62918413490/syntheseus-0.4.0.tar.gz (from https://pypi.org/simple/syntheseus/) (requires-python:>=3.7), version: 0.4.0 2024-05-07T17:05:13,102 Skipping link: No binaries permitted for syntheseus: https://files.pythonhosted.org/packages/1f/94/45da2ca1c67a45496077bbec9cd57e165460a5c29883a581fa2fe7f8de00/syntheseus-0.4.1-py3-none-any.whl (from https://pypi.org/simple/syntheseus/) (requires-python:>=3.7) 2024-05-07T17:05:13,103 Found link https://files.pythonhosted.org/packages/1a/fa/d4c1b199fc160a84de167ae31879d20679a47d5987f56daa2459522c3a1b/syntheseus-0.4.1.tar.gz (from https://pypi.org/simple/syntheseus/) (requires-python:>=3.7), version: 0.4.1 2024-05-07T17:05:13,104 Fetching project page and analyzing links: https://www.piwheels.org/simple/syntheseus/ 2024-05-07T17:05:13,105 Getting page https://www.piwheels.org/simple/syntheseus/ 2024-05-07T17:05:13,106 Found index url https://www.piwheels.org/simple/ 2024-05-07T17:05:13,590 Fetched page https://www.piwheels.org/simple/syntheseus/ as text/html 2024-05-07T17:05:13,592 Skipping link: No binaries permitted for syntheseus: https://www.piwheels.org/simple/syntheseus/syntheseus-0.4.0-py3-none-any.whl#sha256=463ded202c9836004fe3f88bc395278cedfb1aa557dee025729f5dd5b076c505 (from https://www.piwheels.org/simple/syntheseus/) (requires-python:>=3.7) 2024-05-07T17:05:13,592 Skipping link: No binaries permitted for syntheseus: https://www.piwheels.org/simple/syntheseus/syntheseus-0.3.0-py3-none-any.whl#sha256=c0c2da6149b6a4eb5d4d573ba649a047aefbaf78a1842a7ab2c7a2978d5e9541 (from https://www.piwheels.org/simple/syntheseus/) (requires-python:>=3.7) 2024-05-07T17:05:13,593 Skipping link: not a file: https://www.piwheels.org/simple/syntheseus/ 2024-05-07T17:05:13,594 Skipping link: not a file: https://pypi.org/simple/syntheseus/ 2024-05-07T17:05:13,612 Given no hashes to check 1 links for project 'syntheseus': discarding no candidates 2024-05-07T17:05:13,637 Collecting syntheseus==0.4.1 2024-05-07T17:05:13,641 Created temporary directory: /tmp/pip-unpack-138vj50l 2024-05-07T17:05:14,039 Downloading syntheseus-0.4.1.tar.gz (258 kB) 2024-05-07T17:05:14,441 Added syntheseus==0.4.1 from https://files.pythonhosted.org/packages/1a/fa/d4c1b199fc160a84de167ae31879d20679a47d5987f56daa2459522c3a1b/syntheseus-0.4.1.tar.gz to build tracker '/tmp/pip-build-tracker-p0mbil5_' 2024-05-07T17:05:14,452 Created temporary directory: /tmp/pip-build-env-ec23kd4k 2024-05-07T17:05:14,458 Installing build dependencies: started 2024-05-07T17:05:14,460 Running command pip subprocess to install build dependencies 2024-05-07T17:05:15,609 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-07T17:05:16,110 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-07T17:05:17,941 Collecting setuptools>=45 2024-05-07T17:05:17,956 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-05-07T17:05:18,268 Collecting setuptools_scm>=6.2 (from setuptools_scm[toml]>=6.2) 2024-05-07T17:05:18,292 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.1.0-py3-none-any.whl (43 kB) 2024-05-07T17:05:18,637 Collecting packaging>=20 (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-05-07T17:05:18,653 Using cached https://www.piwheels.org/simple/packaging/packaging-24.0-py3-none-any.whl (53 kB) 2024-05-07T17:05:21,231 Installing collected packages: setuptools, packaging, setuptools_scm 2024-05-07T17:05:24,283 Successfully installed packaging-24.0 setuptools-69.5.1 setuptools_scm-8.1.0 2024-05-07T17:05:24,846 Installing build dependencies: finished with status 'done' 2024-05-07T17:05:24,849 Getting requirements to build wheel: started 2024-05-07T17:05:24,850 Running command Getting requirements to build wheel 2024-05-07T17:05:25,737 running egg_info 2024-05-07T17:05:25,742 writing syntheseus.egg-info/PKG-INFO 2024-05-07T17:05:25,751 writing dependency_links to syntheseus.egg-info/dependency_links.txt 2024-05-07T17:05:25,753 writing entry points to syntheseus.egg-info/entry_points.txt 2024-05-07T17:05:25,758 writing requirements to syntheseus.egg-info/requires.txt 2024-05-07T17:05:25,759 writing top-level names to syntheseus.egg-info/top_level.txt 2024-05-07T17:05:25,815 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-07T17:05:25,819 reading manifest file 'syntheseus.egg-info/SOURCES.txt' 2024-05-07T17:05:25,833 adding license file 'LICENSE' 2024-05-07T17:05:25,840 writing manifest file 'syntheseus.egg-info/SOURCES.txt' 2024-05-07T17:05:25,961 Getting requirements to build wheel: finished with status 'done' 2024-05-07T17:05:25,971 Installing backend dependencies: started 2024-05-07T17:05:25,973 Running command pip subprocess to install backend dependencies 2024-05-07T17:05:27,110 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-07T17:05:27,611 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-07T17:05:28,210 Collecting wheel 2024-05-07T17:05:28,241 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-07T17:05:30,543 Installing collected packages: wheel 2024-05-07T17:05:30,766 Creating /tmp/pip-build-env-ec23kd4k/normal/local/bin 2024-05-07T17:05:30,768 changing mode of /tmp/pip-build-env-ec23kd4k/normal/local/bin/wheel to 755 2024-05-07T17:05:30,780 Successfully installed wheel-0.43.0 2024-05-07T17:05:31,292 Installing backend dependencies: finished with status 'done' 2024-05-07T17:05:31,294 Created temporary directory: /tmp/pip-modern-metadata-s2jdynkv 2024-05-07T17:05:31,297 Preparing metadata (pyproject.toml): started 2024-05-07T17:05:31,298 Running command Preparing metadata (pyproject.toml) 2024-05-07T17:05:32,202 running dist_info 2024-05-07T17:05:32,208 creating /tmp/pip-modern-metadata-s2jdynkv/syntheseus.egg-info 2024-05-07T17:05:32,213 writing /tmp/pip-modern-metadata-s2jdynkv/syntheseus.egg-info/PKG-INFO 2024-05-07T17:05:32,222 writing dependency_links to /tmp/pip-modern-metadata-s2jdynkv/syntheseus.egg-info/dependency_links.txt 2024-05-07T17:05:32,224 writing entry points to /tmp/pip-modern-metadata-s2jdynkv/syntheseus.egg-info/entry_points.txt 2024-05-07T17:05:32,229 writing requirements to /tmp/pip-modern-metadata-s2jdynkv/syntheseus.egg-info/requires.txt 2024-05-07T17:05:32,230 writing top-level names to /tmp/pip-modern-metadata-s2jdynkv/syntheseus.egg-info/top_level.txt 2024-05-07T17:05:32,231 writing manifest file '/tmp/pip-modern-metadata-s2jdynkv/syntheseus.egg-info/SOURCES.txt' 2024-05-07T17:05:32,293 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-07T17:05:32,296 reading manifest file '/tmp/pip-modern-metadata-s2jdynkv/syntheseus.egg-info/SOURCES.txt' 2024-05-07T17:05:32,298 adding license file 'LICENSE' 2024-05-07T17:05:32,302 writing manifest file '/tmp/pip-modern-metadata-s2jdynkv/syntheseus.egg-info/SOURCES.txt' 2024-05-07T17:05:32,303 creating '/tmp/pip-modern-metadata-s2jdynkv/syntheseus-0.4.1.dist-info' 2024-05-07T17:05:32,471 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-07T17:05:32,476 Source in /tmp/pip-wheel-7gosg722/syntheseus_34da60a19bea4d2294158be7918248d8 has version 0.4.1, which satisfies requirement syntheseus==0.4.1 from https://files.pythonhosted.org/packages/1a/fa/d4c1b199fc160a84de167ae31879d20679a47d5987f56daa2459522c3a1b/syntheseus-0.4.1.tar.gz 2024-05-07T17:05:32,477 Removed syntheseus==0.4.1 from https://files.pythonhosted.org/packages/1a/fa/d4c1b199fc160a84de167ae31879d20679a47d5987f56daa2459522c3a1b/syntheseus-0.4.1.tar.gz from build tracker '/tmp/pip-build-tracker-p0mbil5_' 2024-05-07T17:05:32,484 Created temporary directory: /tmp/pip-unpack-v7ll57gr 2024-05-07T17:05:32,485 Created temporary directory: /tmp/pip-unpack-54xr3xeb 2024-05-07T17:05:32,540 Building wheels for collected packages: syntheseus 2024-05-07T17:05:32,544 Created temporary directory: /tmp/pip-wheel-_oq2jq4m 2024-05-07T17:05:32,544 Destination directory: /tmp/pip-wheel-_oq2jq4m 2024-05-07T17:05:32,547 Building wheel for syntheseus (pyproject.toml): started 2024-05-07T17:05:32,548 Running command Building wheel for syntheseus (pyproject.toml) 2024-05-07T17:05:33,385 running bdist_wheel 2024-05-07T17:05:33,407 running build 2024-05-07T17:05:33,408 running build_py 2024-05-07T17:05:33,413 creating build 2024-05-07T17:05:33,414 creating build/lib 2024-05-07T17:05:33,415 creating build/lib/syntheseus 2024-05-07T17:05:33,416 copying syntheseus/__init__.py -> build/lib/syntheseus 2024-05-07T17:05:33,419 creating build/lib/syntheseus/interface 2024-05-07T17:05:33,420 copying syntheseus/interface/__init__.py -> build/lib/syntheseus/interface 2024-05-07T17:05:33,423 copying syntheseus/interface/typed_dict.py -> build/lib/syntheseus/interface 2024-05-07T17:05:33,426 copying syntheseus/interface/molecule.py -> build/lib/syntheseus/interface 2024-05-07T17:05:33,428 copying syntheseus/interface/reaction.py -> build/lib/syntheseus/interface 2024-05-07T17:05:33,431 copying syntheseus/interface/bag.py -> build/lib/syntheseus/interface 2024-05-07T17:05:33,433 copying syntheseus/interface/models.py -> build/lib/syntheseus/interface 2024-05-07T17:05:33,436 creating build/lib/syntheseus/search 2024-05-07T17:05:33,437 copying syntheseus/search/__init__.py -> build/lib/syntheseus/search 2024-05-07T17:05:33,439 copying syntheseus/search/mol_inventory.py -> build/lib/syntheseus/search 2024-05-07T17:05:33,442 copying syntheseus/search/visualization.py -> build/lib/syntheseus/search 2024-05-07T17:05:33,444 creating build/lib/syntheseus/reaction_prediction 2024-05-07T17:05:33,445 copying syntheseus/reaction_prediction/__init__.py -> build/lib/syntheseus/reaction_prediction 2024-05-07T17:05:33,448 creating build/lib/syntheseus/cli 2024-05-07T17:05:33,449 copying syntheseus/cli/__init__.py -> build/lib/syntheseus/cli 2024-05-07T17:05:33,450 copying syntheseus/cli/search.py -> build/lib/syntheseus/cli 2024-05-07T17:05:33,453 copying syntheseus/cli/eval_single_step.py -> build/lib/syntheseus/cli 2024-05-07T17:05:33,456 copying syntheseus/cli/main.py -> build/lib/syntheseus/cli 2024-05-07T17:05:33,458 creating build/lib/syntheseus/search/graph 2024-05-07T17:05:33,459 copying syntheseus/search/graph/__init__.py -> build/lib/syntheseus/search/graph 2024-05-07T17:05:33,461 copying syntheseus/search/graph/standardization.py -> build/lib/syntheseus/search/graph 2024-05-07T17:05:33,463 copying syntheseus/search/graph/base_graph.py -> build/lib/syntheseus/search/graph 2024-05-07T17:05:33,466 copying syntheseus/search/graph/molset.py -> build/lib/syntheseus/search/graph 2024-05-07T17:05:33,468 copying syntheseus/search/graph/and_or.py -> build/lib/syntheseus/search/graph 2024-05-07T17:05:33,471 copying syntheseus/search/graph/route.py -> build/lib/syntheseus/search/graph 2024-05-07T17:05:33,473 copying syntheseus/search/graph/node.py -> build/lib/syntheseus/search/graph 2024-05-07T17:05:33,475 creating build/lib/syntheseus/search/node_evaluation 2024-05-07T17:05:33,477 copying syntheseus/search/node_evaluation/__init__.py -> build/lib/syntheseus/search/node_evaluation 2024-05-07T17:05:33,479 copying syntheseus/search/node_evaluation/common.py -> build/lib/syntheseus/search/node_evaluation 2024-05-07T17:05:33,481 copying syntheseus/search/node_evaluation/base.py -> build/lib/syntheseus/search/node_evaluation 2024-05-07T17:05:33,483 creating build/lib/syntheseus/search/utils 2024-05-07T17:05:33,485 copying syntheseus/search/utils/__init__.py -> build/lib/syntheseus/search/utils 2024-05-07T17:05:33,487 copying syntheseus/search/utils/misc.py -> build/lib/syntheseus/search/utils 2024-05-07T17:05:33,489 creating build/lib/syntheseus/search/algorithms 2024-05-07T17:05:33,491 copying syntheseus/search/algorithms/__init__.py -> build/lib/syntheseus/search/algorithms 2024-05-07T17:05:33,492 copying syntheseus/search/algorithms/pdvn.py -> build/lib/syntheseus/search/algorithms 2024-05-07T17:05:33,495 copying syntheseus/search/algorithms/random.py -> build/lib/syntheseus/search/algorithms 2024-05-07T17:05:33,497 copying syntheseus/search/algorithms/breadth_first.py -> build/lib/syntheseus/search/algorithms 2024-05-07T17:05:33,499 copying syntheseus/search/algorithms/base.py -> build/lib/syntheseus/search/algorithms 2024-05-07T17:05:33,502 copying syntheseus/search/algorithms/mixins.py -> build/lib/syntheseus/search/algorithms 2024-05-07T17:05:33,504 creating build/lib/syntheseus/search/analysis 2024-05-07T17:05:33,506 copying syntheseus/search/analysis/__init__.py -> build/lib/syntheseus/search/analysis 2024-05-07T17:05:33,507 copying syntheseus/search/analysis/solution_time.py -> build/lib/syntheseus/search/analysis 2024-05-07T17:05:33,510 copying syntheseus/search/analysis/diversity.py -> build/lib/syntheseus/search/analysis 2024-05-07T17:05:33,512 copying syntheseus/search/analysis/route_extraction.py -> build/lib/syntheseus/search/analysis 2024-05-07T17:05:33,515 creating build/lib/syntheseus/search/graph/message_passing 2024-05-07T17:05:33,516 copying syntheseus/search/graph/message_passing/__init__.py -> build/lib/syntheseus/search/graph/message_passing 2024-05-07T17:05:33,518 copying syntheseus/search/graph/message_passing/run.py -> build/lib/syntheseus/search/graph/message_passing 2024-05-07T17:05:33,521 copying syntheseus/search/graph/message_passing/update_functions.py -> build/lib/syntheseus/search/graph/message_passing 2024-05-07T17:05:33,523 creating build/lib/syntheseus/search/algorithms/mcts 2024-05-07T17:05:33,525 copying syntheseus/search/algorithms/mcts/__init__.py -> build/lib/syntheseus/search/algorithms/mcts 2024-05-07T17:05:33,527 copying syntheseus/search/algorithms/mcts/molset.py -> build/lib/syntheseus/search/algorithms/mcts 2024-05-07T17:05:33,529 copying syntheseus/search/algorithms/mcts/base.py -> build/lib/syntheseus/search/algorithms/mcts 2024-05-07T17:05:33,532 creating build/lib/syntheseus/search/algorithms/best_first 2024-05-07T17:05:33,533 copying syntheseus/search/algorithms/best_first/__init__.py -> build/lib/syntheseus/search/algorithms/best_first 2024-05-07T17:05:33,535 copying syntheseus/search/algorithms/best_first/retro_star.py -> build/lib/syntheseus/search/algorithms/best_first 2024-05-07T17:05:33,538 copying syntheseus/search/algorithms/best_first/base.py -> build/lib/syntheseus/search/algorithms/best_first 2024-05-07T17:05:33,541 creating build/lib/syntheseus/reaction_prediction/data 2024-05-07T17:05:33,542 copying syntheseus/reaction_prediction/data/__init__.py -> build/lib/syntheseus/reaction_prediction/data 2024-05-07T17:05:33,544 copying syntheseus/reaction_prediction/data/reaction_sample.py -> build/lib/syntheseus/reaction_prediction/data 2024-05-07T17:05:33,546 copying syntheseus/reaction_prediction/data/dataset.py -> build/lib/syntheseus/reaction_prediction/data 2024-05-07T17:05:33,549 creating build/lib/syntheseus/reaction_prediction/utils 2024-05-07T17:05:33,550 copying syntheseus/reaction_prediction/utils/__init__.py -> build/lib/syntheseus/reaction_prediction/utils 2024-05-07T17:05:33,552 copying syntheseus/reaction_prediction/utils/downloading.py -> build/lib/syntheseus/reaction_prediction/utils 2024-05-07T17:05:33,553 copying syntheseus/reaction_prediction/utils/config.py -> build/lib/syntheseus/reaction_prediction/utils 2024-05-07T17:05:33,555 copying syntheseus/reaction_prediction/utils/testing.py -> build/lib/syntheseus/reaction_prediction/utils 2024-05-07T17:05:33,557 copying syntheseus/reaction_prediction/utils/misc.py -> build/lib/syntheseus/reaction_prediction/utils 2024-05-07T17:05:33,559 copying syntheseus/reaction_prediction/utils/inference.py -> build/lib/syntheseus/reaction_prediction/utils 2024-05-07T17:05:33,561 copying syntheseus/reaction_prediction/utils/parallel.py -> build/lib/syntheseus/reaction_prediction/utils 2024-05-07T17:05:33,563 copying syntheseus/reaction_prediction/utils/model_loading.py -> build/lib/syntheseus/reaction_prediction/utils 2024-05-07T17:05:33,566 copying syntheseus/reaction_prediction/utils/metrics.py -> build/lib/syntheseus/reaction_prediction/utils 2024-05-07T17:05:33,568 creating build/lib/syntheseus/reaction_prediction/cli 2024-05-07T17:05:33,569 copying syntheseus/reaction_prediction/cli/__init__.py -> build/lib/syntheseus/reaction_prediction/cli 2024-05-07T17:05:33,572 creating build/lib/syntheseus/reaction_prediction/inference 2024-05-07T17:05:33,573 copying syntheseus/reaction_prediction/inference/__init__.py -> build/lib/syntheseus/reaction_prediction/inference 2024-05-07T17:05:33,575 copying syntheseus/reaction_prediction/inference/config.py -> build/lib/syntheseus/reaction_prediction/inference 2024-05-07T17:05:33,577 copying syntheseus/reaction_prediction/inference/graph2edits.py -> build/lib/syntheseus/reaction_prediction/inference 2024-05-07T17:05:33,579 copying syntheseus/reaction_prediction/inference/mhnreact.py -> build/lib/syntheseus/reaction_prediction/inference 2024-05-07T17:05:33,582 copying syntheseus/reaction_prediction/inference/toy_models.py -> build/lib/syntheseus/reaction_prediction/inference 2024-05-07T17:05:33,584 copying syntheseus/reaction_prediction/inference/root_aligned.py -> build/lib/syntheseus/reaction_prediction/inference 2024-05-07T17:05:33,586 copying syntheseus/reaction_prediction/inference/chemformer.py -> build/lib/syntheseus/reaction_prediction/inference 2024-05-07T17:05:33,589 copying syntheseus/reaction_prediction/inference/megan.py -> build/lib/syntheseus/reaction_prediction/inference 2024-05-07T17:05:33,591 copying syntheseus/reaction_prediction/inference/local_retro.py -> build/lib/syntheseus/reaction_prediction/inference 2024-05-07T17:05:33,593 copying syntheseus/reaction_prediction/inference/base.py -> build/lib/syntheseus/reaction_prediction/inference 2024-05-07T17:05:33,595 copying syntheseus/reaction_prediction/inference/retro_knn.py -> build/lib/syntheseus/reaction_prediction/inference 2024-05-07T17:05:33,598 copying syntheseus/reaction_prediction/inference/gln.py -> build/lib/syntheseus/reaction_prediction/inference 2024-05-07T17:05:33,600 creating build/lib/syntheseus/reaction_prediction/models 2024-05-07T17:05:33,602 copying syntheseus/reaction_prediction/models/__init__.py -> build/lib/syntheseus/reaction_prediction/models 2024-05-07T17:05:33,604 copying syntheseus/reaction_prediction/models/retro_knn.py -> build/lib/syntheseus/reaction_prediction/models 2024-05-07T17:05:33,606 creating build/lib/syntheseus/reaction_prediction/chem 2024-05-07T17:05:33,607 copying syntheseus/reaction_prediction/chem/__init__.py -> build/lib/syntheseus/reaction_prediction/chem 2024-05-07T17:05:33,609 copying syntheseus/reaction_prediction/chem/utils.py -> build/lib/syntheseus/reaction_prediction/chem 2024-05-07T17:05:33,611 running egg_info 2024-05-07T17:05:33,616 writing syntheseus.egg-info/PKG-INFO 2024-05-07T17:05:33,624 writing dependency_links to syntheseus.egg-info/dependency_links.txt 2024-05-07T17:05:33,626 writing entry points to syntheseus.egg-info/entry_points.txt 2024-05-07T17:05:33,631 writing requirements to syntheseus.egg-info/requires.txt 2024-05-07T17:05:33,633 writing top-level names to syntheseus.egg-info/top_level.txt 2024-05-07T17:05:33,676 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-07T17:05:33,680 reading manifest file 'syntheseus.egg-info/SOURCES.txt' 2024-05-07T17:05:33,692 adding license file 'LICENSE' 2024-05-07T17:05:33,699 writing manifest file 'syntheseus.egg-info/SOURCES.txt' 2024-05-07T17:05:33,703 /tmp/pip-build-env-ec23kd4k/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'syntheseus.reaction_prediction.environment_gln' is absent from the `packages` configuration. 2024-05-07T17:05:33,703 !! 2024-05-07T17:05:33,704 ******************************************************************************** 2024-05-07T17:05:33,705 ############################ 2024-05-07T17:05:33,706 # Package would be ignored # 2024-05-07T17:05:33,706 ############################ 2024-05-07T17:05:33,707 Python recognizes 'syntheseus.reaction_prediction.environment_gln' as an importable package[^1], 2024-05-07T17:05:33,708 but it is absent from setuptools' `packages` configuration. 2024-05-07T17:05:33,709 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-07T17:05:33,709 package, please make sure that 'syntheseus.reaction_prediction.environment_gln' is explicitly added 2024-05-07T17:05:33,710 to the `packages` configuration field. 2024-05-07T17:05:33,711 Alternatively, you can also rely on setuptools' discovery methods 2024-05-07T17:05:33,712 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-07T17:05:33,713 instead of `find_packages(...)`/`find:`). 2024-05-07T17:05:33,714 You can read more about "package discovery" on setuptools documentation page: 2024-05-07T17:05:33,715 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-07T17:05:33,716 If you don't want 'syntheseus.reaction_prediction.environment_gln' to be distributed and are 2024-05-07T17:05:33,717 already explicitly excluding 'syntheseus.reaction_prediction.environment_gln' via 2024-05-07T17:05:33,717 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-07T17:05:33,718 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-07T17:05:33,718 combination with a more fine grained `package-data` configuration. 2024-05-07T17:05:33,719 You can read more about "package data files" on setuptools documentation page: 2024-05-07T17:05:33,720 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-07T17:05:33,722 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-07T17:05:33,723 even if it does not contain any `.py` files. 2024-05-07T17:05:33,724 On the other hand, currently there is no concept of package data 2024-05-07T17:05:33,724 directory, all directories are treated like packages. 2024-05-07T17:05:33,725 ******************************************************************************** 2024-05-07T17:05:33,726 !! 2024-05-07T17:05:33,726 check.warn(importable) 2024-05-07T17:05:33,727 /tmp/pip-build-env-ec23kd4k/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'syntheseus.tests' is absent from the `packages` configuration. 2024-05-07T17:05:33,727 !! 2024-05-07T17:05:33,728 ******************************************************************************** 2024-05-07T17:05:33,729 ############################ 2024-05-07T17:05:33,729 # Package would be ignored # 2024-05-07T17:05:33,729 ############################ 2024-05-07T17:05:33,730 Python recognizes 'syntheseus.tests' as an importable package[^1], 2024-05-07T17:05:33,730 but it is absent from setuptools' `packages` configuration. 2024-05-07T17:05:33,731 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-07T17:05:33,731 package, please make sure that 'syntheseus.tests' is explicitly added 2024-05-07T17:05:33,732 to the `packages` configuration field. 2024-05-07T17:05:33,733 Alternatively, you can also rely on setuptools' discovery methods 2024-05-07T17:05:33,733 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-07T17:05:33,734 instead of `find_packages(...)`/`find:`). 2024-05-07T17:05:33,735 You can read more about "package discovery" on setuptools documentation page: 2024-05-07T17:05:33,736 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-07T17:05:33,737 If you don't want 'syntheseus.tests' to be distributed and are 2024-05-07T17:05:33,737 already explicitly excluding 'syntheseus.tests' via 2024-05-07T17:05:33,738 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-07T17:05:33,738 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-07T17:05:33,739 combination with a more fine grained `package-data` configuration. 2024-05-07T17:05:33,740 You can read more about "package data files" on setuptools documentation page: 2024-05-07T17:05:33,741 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-07T17:05:33,742 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-07T17:05:33,743 even if it does not contain any `.py` files. 2024-05-07T17:05:33,743 On the other hand, currently there is no concept of package data 2024-05-07T17:05:33,744 directory, all directories are treated like packages. 2024-05-07T17:05:33,744 ******************************************************************************** 2024-05-07T17:05:33,745 !! 2024-05-07T17:05:33,746 check.warn(importable) 2024-05-07T17:05:33,748 /tmp/pip-build-env-ec23kd4k/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'syntheseus.tests.cli' is absent from the `packages` configuration. 2024-05-07T17:05:33,749 !! 2024-05-07T17:05:33,751 ******************************************************************************** 2024-05-07T17:05:33,752 ############################ 2024-05-07T17:05:33,752 # Package would be ignored # 2024-05-07T17:05:33,753 ############################ 2024-05-07T17:05:33,754 Python recognizes 'syntheseus.tests.cli' as an importable package[^1], 2024-05-07T17:05:33,754 but it is absent from setuptools' `packages` configuration. 2024-05-07T17:05:33,756 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-07T17:05:33,756 package, please make sure that 'syntheseus.tests.cli' is explicitly added 2024-05-07T17:05:33,757 to the `packages` configuration field. 2024-05-07T17:05:33,758 Alternatively, you can also rely on setuptools' discovery methods 2024-05-07T17:05:33,758 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-07T17:05:33,759 instead of `find_packages(...)`/`find:`). 2024-05-07T17:05:33,760 You can read more about "package discovery" on setuptools documentation page: 2024-05-07T17:05:33,761 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-07T17:05:33,762 If you don't want 'syntheseus.tests.cli' to be distributed and are 2024-05-07T17:05:33,762 already explicitly excluding 'syntheseus.tests.cli' via 2024-05-07T17:05:33,763 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-07T17:05:33,763 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-07T17:05:33,764 combination with a more fine grained `package-data` configuration. 2024-05-07T17:05:33,765 You can read more about "package data files" on setuptools documentation page: 2024-05-07T17:05:33,766 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-07T17:05:33,768 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-07T17:05:33,769 even if it does not contain any `.py` files. 2024-05-07T17:05:33,769 On the other hand, currently there is no concept of package data 2024-05-07T17:05:33,770 directory, all directories are treated like packages. 2024-05-07T17:05:33,771 ******************************************************************************** 2024-05-07T17:05:33,772 !! 2024-05-07T17:05:33,773 check.warn(importable) 2024-05-07T17:05:33,774 /tmp/pip-build-env-ec23kd4k/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'syntheseus.tests.interface' is absent from the `packages` configuration. 2024-05-07T17:05:33,774 !! 2024-05-07T17:05:33,776 ******************************************************************************** 2024-05-07T17:05:33,777 ############################ 2024-05-07T17:05:33,777 # Package would be ignored # 2024-05-07T17:05:33,778 ############################ 2024-05-07T17:05:33,779 Python recognizes 'syntheseus.tests.interface' as an importable package[^1], 2024-05-07T17:05:33,779 but it is absent from setuptools' `packages` configuration. 2024-05-07T17:05:33,781 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-07T17:05:33,781 package, please make sure that 'syntheseus.tests.interface' is explicitly added 2024-05-07T17:05:33,782 to the `packages` configuration field. 2024-05-07T17:05:33,784 Alternatively, you can also rely on setuptools' discovery methods 2024-05-07T17:05:33,784 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-07T17:05:33,785 instead of `find_packages(...)`/`find:`). 2024-05-07T17:05:33,787 You can read more about "package discovery" on setuptools documentation page: 2024-05-07T17:05:33,788 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-07T17:05:33,789 If you don't want 'syntheseus.tests.interface' to be distributed and are 2024-05-07T17:05:33,790 already explicitly excluding 'syntheseus.tests.interface' via 2024-05-07T17:05:33,791 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-07T17:05:33,791 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-07T17:05:33,792 combination with a more fine grained `package-data` configuration. 2024-05-07T17:05:33,794 You can read more about "package data files" on setuptools documentation page: 2024-05-07T17:05:33,795 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-07T17:05:33,796 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-07T17:05:33,797 even if it does not contain any `.py` files. 2024-05-07T17:05:33,797 On the other hand, currently there is no concept of package data 2024-05-07T17:05:33,798 directory, all directories are treated like packages. 2024-05-07T17:05:33,798 ******************************************************************************** 2024-05-07T17:05:33,799 !! 2024-05-07T17:05:33,799 check.warn(importable) 2024-05-07T17:05:33,800 /tmp/pip-build-env-ec23kd4k/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'syntheseus.tests.reaction_prediction' is absent from the `packages` configuration. 2024-05-07T17:05:33,800 !! 2024-05-07T17:05:33,801 ******************************************************************************** 2024-05-07T17:05:33,802 ############################ 2024-05-07T17:05:33,802 # Package would be ignored # 2024-05-07T17:05:33,803 ############################ 2024-05-07T17:05:33,803 Python recognizes 'syntheseus.tests.reaction_prediction' as an importable package[^1], 2024-05-07T17:05:33,803 but it is absent from setuptools' `packages` configuration. 2024-05-07T17:05:33,804 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-07T17:05:33,805 package, please make sure that 'syntheseus.tests.reaction_prediction' is explicitly added 2024-05-07T17:05:33,805 to the `packages` configuration field. 2024-05-07T17:05:33,806 Alternatively, you can also rely on setuptools' discovery methods 2024-05-07T17:05:33,807 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-07T17:05:33,808 instead of `find_packages(...)`/`find:`). 2024-05-07T17:05:33,808 You can read more about "package discovery" on setuptools documentation page: 2024-05-07T17:05:33,809 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-07T17:05:33,810 If you don't want 'syntheseus.tests.reaction_prediction' to be distributed and are 2024-05-07T17:05:33,811 already explicitly excluding 'syntheseus.tests.reaction_prediction' via 2024-05-07T17:05:33,811 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-07T17:05:33,812 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-07T17:05:33,812 combination with a more fine grained `package-data` configuration. 2024-05-07T17:05:33,813 You can read more about "package data files" on setuptools documentation page: 2024-05-07T17:05:33,815 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-07T17:05:33,816 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-07T17:05:33,817 even if it does not contain any `.py` files. 2024-05-07T17:05:33,817 On the other hand, currently there is no concept of package data 2024-05-07T17:05:33,818 directory, all directories are treated like packages. 2024-05-07T17:05:33,819 ******************************************************************************** 2024-05-07T17:05:33,820 !! 2024-05-07T17:05:33,820 check.warn(importable) 2024-05-07T17:05:33,821 /tmp/pip-build-env-ec23kd4k/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'syntheseus.tests.reaction_prediction.chem' is absent from the `packages` configuration. 2024-05-07T17:05:33,821 !! 2024-05-07T17:05:33,823 ******************************************************************************** 2024-05-07T17:05:33,823 ############################ 2024-05-07T17:05:33,823 # Package would be ignored # 2024-05-07T17:05:33,824 ############################ 2024-05-07T17:05:33,824 Python recognizes 'syntheseus.tests.reaction_prediction.chem' as an importable package[^1], 2024-05-07T17:05:33,825 but it is absent from setuptools' `packages` configuration. 2024-05-07T17:05:33,826 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-07T17:05:33,826 package, please make sure that 'syntheseus.tests.reaction_prediction.chem' is explicitly added 2024-05-07T17:05:33,827 to the `packages` configuration field. 2024-05-07T17:05:33,828 Alternatively, you can also rely on setuptools' discovery methods 2024-05-07T17:05:33,828 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-07T17:05:33,829 instead of `find_packages(...)`/`find:`). 2024-05-07T17:05:33,830 You can read more about "package discovery" on setuptools documentation page: 2024-05-07T17:05:33,831 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-07T17:05:33,832 If you don't want 'syntheseus.tests.reaction_prediction.chem' to be distributed and are 2024-05-07T17:05:33,832 already explicitly excluding 'syntheseus.tests.reaction_prediction.chem' via 2024-05-07T17:05:33,833 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-07T17:05:33,833 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-07T17:05:33,834 combination with a more fine grained `package-data` configuration. 2024-05-07T17:05:33,835 You can read more about "package data files" on setuptools documentation page: 2024-05-07T17:05:33,836 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-07T17:05:33,837 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-07T17:05:33,838 even if it does not contain any `.py` files. 2024-05-07T17:05:33,838 On the other hand, currently there is no concept of package data 2024-05-07T17:05:33,839 directory, all directories are treated like packages. 2024-05-07T17:05:33,839 ******************************************************************************** 2024-05-07T17:05:33,840 !! 2024-05-07T17:05:33,841 check.warn(importable) 2024-05-07T17:05:33,841 /tmp/pip-build-env-ec23kd4k/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'syntheseus.tests.reaction_prediction.data' is absent from the `packages` configuration. 2024-05-07T17:05:33,842 !! 2024-05-07T17:05:33,843 ******************************************************************************** 2024-05-07T17:05:33,843 ############################ 2024-05-07T17:05:33,844 # Package would be ignored # 2024-05-07T17:05:33,844 ############################ 2024-05-07T17:05:33,845 Python recognizes 'syntheseus.tests.reaction_prediction.data' as an importable package[^1], 2024-05-07T17:05:33,845 but it is absent from setuptools' `packages` configuration. 2024-05-07T17:05:33,846 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-07T17:05:33,847 package, please make sure that 'syntheseus.tests.reaction_prediction.data' is explicitly added 2024-05-07T17:05:33,847 to the `packages` configuration field. 2024-05-07T17:05:33,848 Alternatively, you can also rely on setuptools' discovery methods 2024-05-07T17:05:33,849 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-07T17:05:33,849 instead of `find_packages(...)`/`find:`). 2024-05-07T17:05:33,850 You can read more about "package discovery" on setuptools documentation page: 2024-05-07T17:05:33,851 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-07T17:05:33,852 If you don't want 'syntheseus.tests.reaction_prediction.data' to be distributed and are 2024-05-07T17:05:33,853 already explicitly excluding 'syntheseus.tests.reaction_prediction.data' via 2024-05-07T17:05:33,853 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-07T17:05:33,853 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-07T17:05:33,854 combination with a more fine grained `package-data` configuration. 2024-05-07T17:05:33,855 You can read more about "package data files" on setuptools documentation page: 2024-05-07T17:05:33,856 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-07T17:05:33,857 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-07T17:05:33,857 even if it does not contain any `.py` files. 2024-05-07T17:05:33,858 On the other hand, currently there is no concept of package data 2024-05-07T17:05:33,858 directory, all directories are treated like packages. 2024-05-07T17:05:33,859 ******************************************************************************** 2024-05-07T17:05:33,859 !! 2024-05-07T17:05:33,860 check.warn(importable) 2024-05-07T17:05:33,860 /tmp/pip-build-env-ec23kd4k/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'syntheseus.tests.reaction_prediction.inference' is absent from the `packages` configuration. 2024-05-07T17:05:33,861 !! 2024-05-07T17:05:33,862 ******************************************************************************** 2024-05-07T17:05:33,862 ############################ 2024-05-07T17:05:33,863 # Package would be ignored # 2024-05-07T17:05:33,863 ############################ 2024-05-07T17:05:33,863 Python recognizes 'syntheseus.tests.reaction_prediction.inference' as an importable package[^1], 2024-05-07T17:05:33,864 but it is absent from setuptools' `packages` configuration. 2024-05-07T17:05:33,865 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-07T17:05:33,865 package, please make sure that 'syntheseus.tests.reaction_prediction.inference' is explicitly added 2024-05-07T17:05:33,866 to the `packages` configuration field. 2024-05-07T17:05:33,867 Alternatively, you can also rely on setuptools' discovery methods 2024-05-07T17:05:33,867 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-07T17:05:33,868 instead of `find_packages(...)`/`find:`). 2024-05-07T17:05:33,869 You can read more about "package discovery" on setuptools documentation page: 2024-05-07T17:05:33,870 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-07T17:05:33,871 If you don't want 'syntheseus.tests.reaction_prediction.inference' to be distributed and are 2024-05-07T17:05:33,871 already explicitly excluding 'syntheseus.tests.reaction_prediction.inference' via 2024-05-07T17:05:33,872 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-07T17:05:33,872 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-07T17:05:33,873 combination with a more fine grained `package-data` configuration. 2024-05-07T17:05:33,874 You can read more about "package data files" on setuptools documentation page: 2024-05-07T17:05:33,875 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-07T17:05:33,876 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-07T17:05:33,877 even if it does not contain any `.py` files. 2024-05-07T17:05:33,877 On the other hand, currently there is no concept of package data 2024-05-07T17:05:33,878 directory, all directories are treated like packages. 2024-05-07T17:05:33,878 ******************************************************************************** 2024-05-07T17:05:33,879 !! 2024-05-07T17:05:33,879 check.warn(importable) 2024-05-07T17:05:33,880 /tmp/pip-build-env-ec23kd4k/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'syntheseus.tests.reaction_prediction.utils' is absent from the `packages` configuration. 2024-05-07T17:05:33,880 !! 2024-05-07T17:05:33,881 ******************************************************************************** 2024-05-07T17:05:33,881 ############################ 2024-05-07T17:05:33,882 # Package would be ignored # 2024-05-07T17:05:33,882 ############################ 2024-05-07T17:05:33,883 Python recognizes 'syntheseus.tests.reaction_prediction.utils' as an importable package[^1], 2024-05-07T17:05:33,883 but it is absent from setuptools' `packages` configuration. 2024-05-07T17:05:33,884 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-07T17:05:33,884 package, please make sure that 'syntheseus.tests.reaction_prediction.utils' is explicitly added 2024-05-07T17:05:33,885 to the `packages` configuration field. 2024-05-07T17:05:33,886 Alternatively, you can also rely on setuptools' discovery methods 2024-05-07T17:05:33,886 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-07T17:05:33,887 instead of `find_packages(...)`/`find:`). 2024-05-07T17:05:33,888 You can read more about "package discovery" on setuptools documentation page: 2024-05-07T17:05:33,889 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-07T17:05:33,890 If you don't want 'syntheseus.tests.reaction_prediction.utils' to be distributed and are 2024-05-07T17:05:33,890 already explicitly excluding 'syntheseus.tests.reaction_prediction.utils' via 2024-05-07T17:05:33,891 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-07T17:05:33,891 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-07T17:05:33,892 combination with a more fine grained `package-data` configuration. 2024-05-07T17:05:33,893 You can read more about "package data files" on setuptools documentation page: 2024-05-07T17:05:33,894 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-07T17:05:33,895 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-07T17:05:33,896 even if it does not contain any `.py` files. 2024-05-07T17:05:33,896 On the other hand, currently there is no concept of package data 2024-05-07T17:05:33,897 directory, all directories are treated like packages. 2024-05-07T17:05:33,897 ******************************************************************************** 2024-05-07T17:05:33,898 !! 2024-05-07T17:05:33,899 check.warn(importable) 2024-05-07T17:05:33,899 /tmp/pip-build-env-ec23kd4k/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'syntheseus.tests.search' is absent from the `packages` configuration. 2024-05-07T17:05:33,900 !! 2024-05-07T17:05:33,901 ******************************************************************************** 2024-05-07T17:05:33,902 ############################ 2024-05-07T17:05:33,902 # Package would be ignored # 2024-05-07T17:05:33,903 ############################ 2024-05-07T17:05:33,903 Python recognizes 'syntheseus.tests.search' as an importable package[^1], 2024-05-07T17:05:33,904 but it is absent from setuptools' `packages` configuration. 2024-05-07T17:05:33,905 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-07T17:05:33,905 package, please make sure that 'syntheseus.tests.search' is explicitly added 2024-05-07T17:05:33,906 to the `packages` configuration field. 2024-05-07T17:05:33,907 Alternatively, you can also rely on setuptools' discovery methods 2024-05-07T17:05:33,907 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-07T17:05:33,907 instead of `find_packages(...)`/`find:`). 2024-05-07T17:05:33,908 You can read more about "package discovery" on setuptools documentation page: 2024-05-07T17:05:33,909 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-07T17:05:33,910 If you don't want 'syntheseus.tests.search' to be distributed and are 2024-05-07T17:05:33,910 already explicitly excluding 'syntheseus.tests.search' via 2024-05-07T17:05:33,911 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-07T17:05:33,911 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-07T17:05:33,912 combination with a more fine grained `package-data` configuration. 2024-05-07T17:05:33,912 You can read more about "package data files" on setuptools documentation page: 2024-05-07T17:05:33,913 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-07T17:05:33,915 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-07T17:05:33,916 even if it does not contain any `.py` files. 2024-05-07T17:05:33,916 On the other hand, currently there is no concept of package data 2024-05-07T17:05:33,917 directory, all directories are treated like packages. 2024-05-07T17:05:33,917 ******************************************************************************** 2024-05-07T17:05:33,918 !! 2024-05-07T17:05:33,919 check.warn(importable) 2024-05-07T17:05:33,920 /tmp/pip-build-env-ec23kd4k/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'syntheseus.tests.search.algorithms' is absent from the `packages` configuration. 2024-05-07T17:05:33,920 !! 2024-05-07T17:05:33,922 ******************************************************************************** 2024-05-07T17:05:33,922 ############################ 2024-05-07T17:05:33,923 # Package would be ignored # 2024-05-07T17:05:33,923 ############################ 2024-05-07T17:05:33,924 Python recognizes 'syntheseus.tests.search.algorithms' as an importable package[^1], 2024-05-07T17:05:33,925 but it is absent from setuptools' `packages` configuration. 2024-05-07T17:05:33,925 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-07T17:05:33,926 package, please make sure that 'syntheseus.tests.search.algorithms' is explicitly added 2024-05-07T17:05:33,927 to the `packages` configuration field. 2024-05-07T17:05:33,928 Alternatively, you can also rely on setuptools' discovery methods 2024-05-07T17:05:33,928 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-07T17:05:33,929 instead of `find_packages(...)`/`find:`). 2024-05-07T17:05:33,930 You can read more about "package discovery" on setuptools documentation page: 2024-05-07T17:05:33,931 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-07T17:05:33,932 If you don't want 'syntheseus.tests.search.algorithms' to be distributed and are 2024-05-07T17:05:33,933 already explicitly excluding 'syntheseus.tests.search.algorithms' via 2024-05-07T17:05:33,933 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-07T17:05:33,934 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-07T17:05:33,935 combination with a more fine grained `package-data` configuration. 2024-05-07T17:05:33,936 You can read more about "package data files" on setuptools documentation page: 2024-05-07T17:05:33,936 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-07T17:05:33,937 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-07T17:05:33,938 even if it does not contain any `.py` files. 2024-05-07T17:05:33,938 On the other hand, currently there is no concept of package data 2024-05-07T17:05:33,939 directory, all directories are treated like packages. 2024-05-07T17:05:33,939 ******************************************************************************** 2024-05-07T17:05:33,940 !! 2024-05-07T17:05:33,940 check.warn(importable) 2024-05-07T17:05:33,940 /tmp/pip-build-env-ec23kd4k/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'syntheseus.tests.search.analysis' is absent from the `packages` configuration. 2024-05-07T17:05:33,941 !! 2024-05-07T17:05:33,942 ******************************************************************************** 2024-05-07T17:05:33,942 ############################ 2024-05-07T17:05:33,943 # Package would be ignored # 2024-05-07T17:05:33,943 ############################ 2024-05-07T17:05:33,943 Python recognizes 'syntheseus.tests.search.analysis' as an importable package[^1], 2024-05-07T17:05:33,944 but it is absent from setuptools' `packages` configuration. 2024-05-07T17:05:33,945 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-07T17:05:33,946 package, please make sure that 'syntheseus.tests.search.analysis' is explicitly added 2024-05-07T17:05:33,946 to the `packages` configuration field. 2024-05-07T17:05:33,948 Alternatively, you can also rely on setuptools' discovery methods 2024-05-07T17:05:33,948 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-07T17:05:33,949 instead of `find_packages(...)`/`find:`). 2024-05-07T17:05:33,950 You can read more about "package discovery" on setuptools documentation page: 2024-05-07T17:05:33,951 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-07T17:05:33,952 If you don't want 'syntheseus.tests.search.analysis' to be distributed and are 2024-05-07T17:05:33,953 already explicitly excluding 'syntheseus.tests.search.analysis' via 2024-05-07T17:05:33,953 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-07T17:05:33,954 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-07T17:05:33,954 combination with a more fine grained `package-data` configuration. 2024-05-07T17:05:33,955 You can read more about "package data files" on setuptools documentation page: 2024-05-07T17:05:33,957 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-07T17:05:33,958 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-07T17:05:33,959 even if it does not contain any `.py` files. 2024-05-07T17:05:33,959 On the other hand, currently there is no concept of package data 2024-05-07T17:05:33,960 directory, all directories are treated like packages. 2024-05-07T17:05:33,960 ******************************************************************************** 2024-05-07T17:05:33,961 !! 2024-05-07T17:05:33,962 check.warn(importable) 2024-05-07T17:05:33,963 /tmp/pip-build-env-ec23kd4k/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'syntheseus.tests.search.graph' is absent from the `packages` configuration. 2024-05-07T17:05:33,963 !! 2024-05-07T17:05:33,964 ******************************************************************************** 2024-05-07T17:05:33,965 ############################ 2024-05-07T17:05:33,965 # Package would be ignored # 2024-05-07T17:05:33,965 ############################ 2024-05-07T17:05:33,966 Python recognizes 'syntheseus.tests.search.graph' as an importable package[^1], 2024-05-07T17:05:33,966 but it is absent from setuptools' `packages` configuration. 2024-05-07T17:05:33,967 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-07T17:05:33,967 package, please make sure that 'syntheseus.tests.search.graph' is explicitly added 2024-05-07T17:05:33,968 to the `packages` configuration field. 2024-05-07T17:05:33,969 Alternatively, you can also rely on setuptools' discovery methods 2024-05-07T17:05:33,969 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-07T17:05:33,969 instead of `find_packages(...)`/`find:`). 2024-05-07T17:05:33,970 You can read more about "package discovery" on setuptools documentation page: 2024-05-07T17:05:33,971 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-07T17:05:33,972 If you don't want 'syntheseus.tests.search.graph' to be distributed and are 2024-05-07T17:05:33,972 already explicitly excluding 'syntheseus.tests.search.graph' via 2024-05-07T17:05:33,973 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-07T17:05:33,973 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-07T17:05:33,974 combination with a more fine grained `package-data` configuration. 2024-05-07T17:05:33,975 You can read more about "package data files" on setuptools documentation page: 2024-05-07T17:05:33,976 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-07T17:05:33,977 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-07T17:05:33,978 even if it does not contain any `.py` files. 2024-05-07T17:05:33,978 On the other hand, currently there is no concept of package data 2024-05-07T17:05:33,979 directory, all directories are treated like packages. 2024-05-07T17:05:33,979 ******************************************************************************** 2024-05-07T17:05:33,980 !! 2024-05-07T17:05:33,981 check.warn(importable) 2024-05-07T17:05:33,981 /tmp/pip-build-env-ec23kd4k/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'syntheseus.tests.search.node_evaluation' is absent from the `packages` configuration. 2024-05-07T17:05:33,982 !! 2024-05-07T17:05:33,983 ******************************************************************************** 2024-05-07T17:05:33,983 ############################ 2024-05-07T17:05:33,984 # Package would be ignored # 2024-05-07T17:05:33,984 ############################ 2024-05-07T17:05:33,985 Python recognizes 'syntheseus.tests.search.node_evaluation' as an importable package[^1], 2024-05-07T17:05:33,986 but it is absent from setuptools' `packages` configuration. 2024-05-07T17:05:33,987 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-07T17:05:33,987 package, please make sure that 'syntheseus.tests.search.node_evaluation' is explicitly added 2024-05-07T17:05:33,988 to the `packages` configuration field. 2024-05-07T17:05:33,989 Alternatively, you can also rely on setuptools' discovery methods 2024-05-07T17:05:33,989 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-07T17:05:33,990 instead of `find_packages(...)`/`find:`). 2024-05-07T17:05:33,991 You can read more about "package discovery" on setuptools documentation page: 2024-05-07T17:05:33,992 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-07T17:05:33,992 If you don't want 'syntheseus.tests.search.node_evaluation' to be distributed and are 2024-05-07T17:05:33,993 already explicitly excluding 'syntheseus.tests.search.node_evaluation' via 2024-05-07T17:05:33,993 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-07T17:05:33,994 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-07T17:05:33,994 combination with a more fine grained `package-data` configuration. 2024-05-07T17:05:33,995 You can read more about "package data files" on setuptools documentation page: 2024-05-07T17:05:33,996 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-07T17:05:33,998 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-07T17:05:33,998 even if it does not contain any `.py` files. 2024-05-07T17:05:33,999 On the other hand, currently there is no concept of package data 2024-05-07T17:05:33,999 directory, all directories are treated like packages. 2024-05-07T17:05:33,999 ******************************************************************************** 2024-05-07T17:05:34,000 !! 2024-05-07T17:05:34,001 check.warn(importable) 2024-05-07T17:05:34,001 copying syntheseus/py.typed -> build/lib/syntheseus 2024-05-07T17:05:34,002 creating build/lib/syntheseus/tests 2024-05-07T17:05:34,002 copying syntheseus/tests/__init__.py -> build/lib/syntheseus/tests 2024-05-07T17:05:34,003 copying syntheseus/tests/conftest.py -> build/lib/syntheseus/tests 2024-05-07T17:05:34,003 creating build/lib/syntheseus/tests/cli 2024-05-07T17:05:34,004 copying syntheseus/tests/cli/__init__.py -> build/lib/syntheseus/tests/cli 2024-05-07T17:05:34,004 copying syntheseus/tests/cli/test_cli.py -> build/lib/syntheseus/tests/cli 2024-05-07T17:05:34,005 copying syntheseus/tests/cli/test_eval_single_step.py -> build/lib/syntheseus/tests/cli 2024-05-07T17:05:34,005 creating build/lib/syntheseus/tests/interface 2024-05-07T17:05:34,006 copying syntheseus/tests/interface/__init__.py -> build/lib/syntheseus/tests/interface 2024-05-07T17:05:34,006 copying syntheseus/tests/interface/test_bag.py -> build/lib/syntheseus/tests/interface 2024-05-07T17:05:34,007 copying syntheseus/tests/interface/test_models.py -> build/lib/syntheseus/tests/interface 2024-05-07T17:05:34,007 copying syntheseus/tests/interface/test_molecule.py -> build/lib/syntheseus/tests/interface 2024-05-07T17:05:34,008 copying syntheseus/tests/interface/test_reaction.py -> build/lib/syntheseus/tests/interface 2024-05-07T17:05:34,008 copying syntheseus/tests/interface/test_toy_models.py -> build/lib/syntheseus/tests/interface 2024-05-07T17:05:34,009 creating build/lib/syntheseus/tests/reaction_prediction 2024-05-07T17:05:34,009 copying syntheseus/tests/reaction_prediction/__init__.py -> build/lib/syntheseus/tests/reaction_prediction 2024-05-07T17:05:34,010 creating build/lib/syntheseus/tests/reaction_prediction/chem 2024-05-07T17:05:34,010 copying syntheseus/tests/reaction_prediction/chem/__init__.py -> build/lib/syntheseus/tests/reaction_prediction/chem 2024-05-07T17:05:34,011 copying syntheseus/tests/reaction_prediction/chem/test_utils.py -> build/lib/syntheseus/tests/reaction_prediction/chem 2024-05-07T17:05:34,011 creating build/lib/syntheseus/tests/reaction_prediction/data 2024-05-07T17:05:34,012 copying syntheseus/tests/reaction_prediction/data/__init__.py -> build/lib/syntheseus/tests/reaction_prediction/data 2024-05-07T17:05:34,012 copying syntheseus/tests/reaction_prediction/data/test_dataset.py -> build/lib/syntheseus/tests/reaction_prediction/data 2024-05-07T17:05:34,013 creating build/lib/syntheseus/tests/reaction_prediction/inference 2024-05-07T17:05:34,014 copying syntheseus/tests/reaction_prediction/inference/__init__.py -> build/lib/syntheseus/tests/reaction_prediction/inference 2024-05-07T17:05:34,014 copying syntheseus/tests/reaction_prediction/inference/test_models.py -> build/lib/syntheseus/tests/reaction_prediction/inference 2024-05-07T17:05:34,015 creating build/lib/syntheseus/tests/reaction_prediction/utils 2024-05-07T17:05:34,015 copying syntheseus/tests/reaction_prediction/utils/__init__.py -> build/lib/syntheseus/tests/reaction_prediction/utils 2024-05-07T17:05:34,015 copying syntheseus/tests/reaction_prediction/utils/test_misc.py -> build/lib/syntheseus/tests/reaction_prediction/utils 2024-05-07T17:05:34,016 creating build/lib/syntheseus/tests/search 2024-05-07T17:05:34,016 copying syntheseus/tests/search/__init__.py -> build/lib/syntheseus/tests/search 2024-05-07T17:05:34,017 copying syntheseus/tests/search/conftest.py -> build/lib/syntheseus/tests/search 2024-05-07T17:05:34,017 copying syntheseus/tests/search/test_mol_inventory.py -> build/lib/syntheseus/tests/search 2024-05-07T17:05:34,017 copying syntheseus/tests/search/test_visualization.py -> build/lib/syntheseus/tests/search 2024-05-07T17:05:34,018 creating build/lib/syntheseus/tests/search/algorithms 2024-05-07T17:05:34,018 copying syntheseus/tests/search/algorithms/__init__.py -> build/lib/syntheseus/tests/search/algorithms 2024-05-07T17:05:34,019 copying syntheseus/tests/search/algorithms/test_base.py -> build/lib/syntheseus/tests/search/algorithms 2024-05-07T17:05:34,020 copying syntheseus/tests/search/algorithms/test_best_first.py -> build/lib/syntheseus/tests/search/algorithms 2024-05-07T17:05:34,021 copying syntheseus/tests/search/algorithms/test_breadth_first.py -> build/lib/syntheseus/tests/search/algorithms 2024-05-07T17:05:34,021 copying syntheseus/tests/search/algorithms/test_mcts.py -> build/lib/syntheseus/tests/search/algorithms 2024-05-07T17:05:34,022 copying syntheseus/tests/search/algorithms/test_pdvn.py -> build/lib/syntheseus/tests/search/algorithms 2024-05-07T17:05:34,023 copying syntheseus/tests/search/algorithms/test_random.py -> build/lib/syntheseus/tests/search/algorithms 2024-05-07T17:05:34,023 creating build/lib/syntheseus/tests/search/analysis 2024-05-07T17:05:34,024 copying syntheseus/tests/search/analysis/__init__.py -> build/lib/syntheseus/tests/search/analysis 2024-05-07T17:05:34,024 copying syntheseus/tests/search/analysis/conftest.py -> build/lib/syntheseus/tests/search/analysis 2024-05-07T17:05:34,024 copying syntheseus/tests/search/analysis/test_diversity.py -> build/lib/syntheseus/tests/search/analysis 2024-05-07T17:05:34,025 copying syntheseus/tests/search/analysis/test_route_extraction.py -> build/lib/syntheseus/tests/search/analysis 2024-05-07T17:05:34,025 copying syntheseus/tests/search/analysis/test_solution_time.py -> build/lib/syntheseus/tests/search/analysis 2024-05-07T17:05:34,026 creating build/lib/syntheseus/tests/search/graph 2024-05-07T17:05:34,026 copying syntheseus/tests/search/graph/__init__.py -> build/lib/syntheseus/tests/search/graph 2024-05-07T17:05:34,027 copying syntheseus/tests/search/graph/test_andor.py -> build/lib/syntheseus/tests/search/graph 2024-05-07T17:05:34,028 copying syntheseus/tests/search/graph/test_base.py -> build/lib/syntheseus/tests/search/graph 2024-05-07T17:05:34,028 copying syntheseus/tests/search/graph/test_message_passing.py -> build/lib/syntheseus/tests/search/graph 2024-05-07T17:05:34,029 copying syntheseus/tests/search/graph/test_molset.py -> build/lib/syntheseus/tests/search/graph 2024-05-07T17:05:34,029 copying syntheseus/tests/search/graph/test_route.py -> build/lib/syntheseus/tests/search/graph 2024-05-07T17:05:34,030 copying syntheseus/tests/search/graph/test_standardization.py -> build/lib/syntheseus/tests/search/graph 2024-05-07T17:05:34,030 creating build/lib/syntheseus/tests/search/node_evaluation 2024-05-07T17:05:34,031 copying syntheseus/tests/search/node_evaluation/__init__.py -> build/lib/syntheseus/tests/search/node_evaluation 2024-05-07T17:05:34,032 copying syntheseus/tests/search/node_evaluation/test_common.py -> build/lib/syntheseus/tests/search/node_evaluation 2024-05-07T17:05:34,032 creating build/lib/syntheseus/reaction_prediction/environment_gln 2024-05-07T17:05:34,032 copying syntheseus/reaction_prediction/environment_gln/Dockerfile -> build/lib/syntheseus/reaction_prediction/environment_gln 2024-05-07T17:05:34,033 copying syntheseus/reaction_prediction/environment_gln/environment.yml -> build/lib/syntheseus/reaction_prediction/environment_gln 2024-05-07T17:05:34,033 copying syntheseus/cli/search_config.yml -> build/lib/syntheseus/cli 2024-05-07T17:05:34,034 copying syntheseus/reaction_prediction/inference/default_checkpoint_links.yml -> build/lib/syntheseus/reaction_prediction/inference 2024-05-07T17:05:34,034 installing to build/bdist.linux-armv7l/wheel 2024-05-07T17:05:34,035 running install 2024-05-07T17:05:34,035 running install_lib 2024-05-07T17:05:34,036 creating build/bdist.linux-armv7l 2024-05-07T17:05:34,036 creating build/bdist.linux-armv7l/wheel 2024-05-07T17:05:34,037 creating build/bdist.linux-armv7l/wheel/syntheseus 2024-05-07T17:05:34,037 creating build/bdist.linux-armv7l/wheel/syntheseus/tests 2024-05-07T17:05:34,038 copying build/lib/syntheseus/tests/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests 2024-05-07T17:05:34,038 creating build/bdist.linux-armv7l/wheel/syntheseus/tests/interface 2024-05-07T17:05:34,039 copying build/lib/syntheseus/tests/interface/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/interface 2024-05-07T17:05:34,039 copying build/lib/syntheseus/tests/interface/test_molecule.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/interface 2024-05-07T17:05:34,040 copying build/lib/syntheseus/tests/interface/test_models.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/interface 2024-05-07T17:05:34,040 copying build/lib/syntheseus/tests/interface/test_bag.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/interface 2024-05-07T17:05:34,041 copying build/lib/syntheseus/tests/interface/test_toy_models.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/interface 2024-05-07T17:05:34,041 copying build/lib/syntheseus/tests/interface/test_reaction.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/interface 2024-05-07T17:05:34,042 creating build/bdist.linux-armv7l/wheel/syntheseus/tests/search 2024-05-07T17:05:34,042 copying build/lib/syntheseus/tests/search/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search 2024-05-07T17:05:34,043 creating build/bdist.linux-armv7l/wheel/syntheseus/tests/search/graph 2024-05-07T17:05:34,044 copying build/lib/syntheseus/tests/search/graph/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/graph 2024-05-07T17:05:34,044 copying build/lib/syntheseus/tests/search/graph/test_molset.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/graph 2024-05-07T17:05:34,045 copying build/lib/syntheseus/tests/search/graph/test_standardization.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/graph 2024-05-07T17:05:34,045 copying build/lib/syntheseus/tests/search/graph/test_andor.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/graph 2024-05-07T17:05:34,046 copying build/lib/syntheseus/tests/search/graph/test_base.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/graph 2024-05-07T17:05:34,046 copying build/lib/syntheseus/tests/search/graph/test_message_passing.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/graph 2024-05-07T17:05:34,047 copying build/lib/syntheseus/tests/search/graph/test_route.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/graph 2024-05-07T17:05:34,047 creating build/bdist.linux-armv7l/wheel/syntheseus/tests/search/node_evaluation 2024-05-07T17:05:34,048 copying build/lib/syntheseus/tests/search/node_evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/node_evaluation 2024-05-07T17:05:34,048 copying build/lib/syntheseus/tests/search/node_evaluation/test_common.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/node_evaluation 2024-05-07T17:05:34,049 copying build/lib/syntheseus/tests/search/test_mol_inventory.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search 2024-05-07T17:05:34,050 creating build/bdist.linux-armv7l/wheel/syntheseus/tests/search/algorithms 2024-05-07T17:05:34,050 copying build/lib/syntheseus/tests/search/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/algorithms 2024-05-07T17:05:34,050 copying build/lib/syntheseus/tests/search/algorithms/test_breadth_first.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/algorithms 2024-05-07T17:05:34,051 copying build/lib/syntheseus/tests/search/algorithms/test_random.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/algorithms 2024-05-07T17:05:34,051 copying build/lib/syntheseus/tests/search/algorithms/test_base.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/algorithms 2024-05-07T17:05:34,052 copying build/lib/syntheseus/tests/search/algorithms/test_best_first.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/algorithms 2024-05-07T17:05:34,052 copying build/lib/syntheseus/tests/search/algorithms/test_mcts.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/algorithms 2024-05-07T17:05:34,053 copying build/lib/syntheseus/tests/search/algorithms/test_pdvn.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/algorithms 2024-05-07T17:05:34,054 creating build/bdist.linux-armv7l/wheel/syntheseus/tests/search/analysis 2024-05-07T17:05:34,054 copying build/lib/syntheseus/tests/search/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/analysis 2024-05-07T17:05:34,055 copying build/lib/syntheseus/tests/search/analysis/test_solution_time.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/analysis 2024-05-07T17:05:34,055 copying build/lib/syntheseus/tests/search/analysis/test_diversity.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/analysis 2024-05-07T17:05:34,056 copying build/lib/syntheseus/tests/search/analysis/conftest.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/analysis 2024-05-07T17:05:34,056 copying build/lib/syntheseus/tests/search/analysis/test_route_extraction.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search/analysis 2024-05-07T17:05:34,057 copying build/lib/syntheseus/tests/search/test_visualization.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search 2024-05-07T17:05:34,057 copying build/lib/syntheseus/tests/search/conftest.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/search 2024-05-07T17:05:34,058 creating build/bdist.linux-armv7l/wheel/syntheseus/tests/reaction_prediction 2024-05-07T17:05:34,059 copying build/lib/syntheseus/tests/reaction_prediction/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/reaction_prediction 2024-05-07T17:05:34,060 creating build/bdist.linux-armv7l/wheel/syntheseus/tests/reaction_prediction/data 2024-05-07T17:05:34,061 copying build/lib/syntheseus/tests/reaction_prediction/data/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/reaction_prediction/data 2024-05-07T17:05:34,063 copying build/lib/syntheseus/tests/reaction_prediction/data/test_dataset.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/reaction_prediction/data 2024-05-07T17:05:34,066 creating build/bdist.linux-armv7l/wheel/syntheseus/tests/reaction_prediction/utils 2024-05-07T17:05:34,067 copying build/lib/syntheseus/tests/reaction_prediction/utils/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/reaction_prediction/utils 2024-05-07T17:05:34,068 copying build/lib/syntheseus/tests/reaction_prediction/utils/test_misc.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/reaction_prediction/utils 2024-05-07T17:05:34,071 creating build/bdist.linux-armv7l/wheel/syntheseus/tests/reaction_prediction/inference 2024-05-07T17:05:34,071 copying build/lib/syntheseus/tests/reaction_prediction/inference/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/reaction_prediction/inference 2024-05-07T17:05:34,073 copying build/lib/syntheseus/tests/reaction_prediction/inference/test_models.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/reaction_prediction/inference 2024-05-07T17:05:34,075 creating build/bdist.linux-armv7l/wheel/syntheseus/tests/reaction_prediction/chem 2024-05-07T17:05:34,076 copying build/lib/syntheseus/tests/reaction_prediction/chem/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/reaction_prediction/chem 2024-05-07T17:05:34,078 copying build/lib/syntheseus/tests/reaction_prediction/chem/test_utils.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/reaction_prediction/chem 2024-05-07T17:05:34,080 creating build/bdist.linux-armv7l/wheel/syntheseus/tests/cli 2024-05-07T17:05:34,081 copying build/lib/syntheseus/tests/cli/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/cli 2024-05-07T17:05:34,082 copying build/lib/syntheseus/tests/cli/test_eval_single_step.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/cli 2024-05-07T17:05:34,085 copying build/lib/syntheseus/tests/cli/test_cli.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests/cli 2024-05-07T17:05:34,087 copying build/lib/syntheseus/tests/conftest.py -> build/bdist.linux-armv7l/wheel/syntheseus/tests 2024-05-07T17:05:34,088 copying build/lib/syntheseus/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus 2024-05-07T17:05:34,091 creating build/bdist.linux-armv7l/wheel/syntheseus/interface 2024-05-07T17:05:34,091 copying build/lib/syntheseus/interface/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/interface 2024-05-07T17:05:34,093 copying build/lib/syntheseus/interface/typed_dict.py -> build/bdist.linux-armv7l/wheel/syntheseus/interface 2024-05-07T17:05:34,095 copying build/lib/syntheseus/interface/molecule.py -> build/bdist.linux-armv7l/wheel/syntheseus/interface 2024-05-07T17:05:34,097 copying build/lib/syntheseus/interface/reaction.py -> build/bdist.linux-armv7l/wheel/syntheseus/interface 2024-05-07T17:05:34,098 copying build/lib/syntheseus/interface/bag.py -> build/bdist.linux-armv7l/wheel/syntheseus/interface 2024-05-07T17:05:34,100 copying build/lib/syntheseus/interface/models.py -> build/bdist.linux-armv7l/wheel/syntheseus/interface 2024-05-07T17:05:34,103 creating build/bdist.linux-armv7l/wheel/syntheseus/search 2024-05-07T17:05:34,103 copying build/lib/syntheseus/search/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/search 2024-05-07T17:05:34,106 creating build/bdist.linux-armv7l/wheel/syntheseus/search/graph 2024-05-07T17:05:34,107 copying build/lib/syntheseus/search/graph/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/graph 2024-05-07T17:05:34,108 copying build/lib/syntheseus/search/graph/standardization.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/graph 2024-05-07T17:05:34,111 copying build/lib/syntheseus/search/graph/base_graph.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/graph 2024-05-07T17:05:34,113 creating build/bdist.linux-armv7l/wheel/syntheseus/search/graph/message_passing 2024-05-07T17:05:34,114 copying build/lib/syntheseus/search/graph/message_passing/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/graph/message_passing 2024-05-07T17:05:34,116 copying build/lib/syntheseus/search/graph/message_passing/run.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/graph/message_passing 2024-05-07T17:05:34,118 copying build/lib/syntheseus/search/graph/message_passing/update_functions.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/graph/message_passing 2024-05-07T17:05:34,121 copying build/lib/syntheseus/search/graph/molset.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/graph 2024-05-07T17:05:34,123 copying build/lib/syntheseus/search/graph/and_or.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/graph 2024-05-07T17:05:34,125 copying build/lib/syntheseus/search/graph/route.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/graph 2024-05-07T17:05:34,127 copying build/lib/syntheseus/search/graph/node.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/graph 2024-05-07T17:05:34,130 creating build/bdist.linux-armv7l/wheel/syntheseus/search/node_evaluation 2024-05-07T17:05:34,131 copying build/lib/syntheseus/search/node_evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/node_evaluation 2024-05-07T17:05:34,132 copying build/lib/syntheseus/search/node_evaluation/common.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/node_evaluation 2024-05-07T17:05:34,134 copying build/lib/syntheseus/search/node_evaluation/base.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/node_evaluation 2024-05-07T17:05:34,137 creating build/bdist.linux-armv7l/wheel/syntheseus/search/utils 2024-05-07T17:05:34,138 copying build/lib/syntheseus/search/utils/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/utils 2024-05-07T17:05:34,139 copying build/lib/syntheseus/search/utils/misc.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/utils 2024-05-07T17:05:34,141 copying build/lib/syntheseus/search/mol_inventory.py -> build/bdist.linux-armv7l/wheel/syntheseus/search 2024-05-07T17:05:34,143 creating build/bdist.linux-armv7l/wheel/syntheseus/search/algorithms 2024-05-07T17:05:34,144 copying build/lib/syntheseus/search/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/algorithms 2024-05-07T17:05:34,146 copying build/lib/syntheseus/search/algorithms/pdvn.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/algorithms 2024-05-07T17:05:34,149 creating build/bdist.linux-armv7l/wheel/syntheseus/search/algorithms/mcts 2024-05-07T17:05:34,149 copying build/lib/syntheseus/search/algorithms/mcts/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/algorithms/mcts 2024-05-07T17:05:34,151 copying build/lib/syntheseus/search/algorithms/mcts/molset.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/algorithms/mcts 2024-05-07T17:05:34,153 copying build/lib/syntheseus/search/algorithms/mcts/base.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/algorithms/mcts 2024-05-07T17:05:34,155 copying build/lib/syntheseus/search/algorithms/random.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/algorithms 2024-05-07T17:05:34,157 copying build/lib/syntheseus/search/algorithms/breadth_first.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/algorithms 2024-05-07T17:05:34,159 creating build/bdist.linux-armv7l/wheel/syntheseus/search/algorithms/best_first 2024-05-07T17:05:34,160 copying build/lib/syntheseus/search/algorithms/best_first/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/algorithms/best_first 2024-05-07T17:05:34,162 copying build/lib/syntheseus/search/algorithms/best_first/retro_star.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/algorithms/best_first 2024-05-07T17:05:34,164 copying build/lib/syntheseus/search/algorithms/best_first/base.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/algorithms/best_first 2024-05-07T17:05:34,167 copying build/lib/syntheseus/search/algorithms/base.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/algorithms 2024-05-07T17:05:34,169 copying build/lib/syntheseus/search/algorithms/mixins.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/algorithms 2024-05-07T17:05:34,171 creating build/bdist.linux-armv7l/wheel/syntheseus/search/analysis 2024-05-07T17:05:34,172 copying build/lib/syntheseus/search/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/analysis 2024-05-07T17:05:34,174 copying build/lib/syntheseus/search/analysis/solution_time.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/analysis 2024-05-07T17:05:34,176 copying build/lib/syntheseus/search/analysis/diversity.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/analysis 2024-05-07T17:05:34,178 copying build/lib/syntheseus/search/analysis/route_extraction.py -> build/bdist.linux-armv7l/wheel/syntheseus/search/analysis 2024-05-07T17:05:34,180 copying build/lib/syntheseus/search/visualization.py -> build/bdist.linux-armv7l/wheel/syntheseus/search 2024-05-07T17:05:34,183 creating build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction 2024-05-07T17:05:34,184 copying build/lib/syntheseus/reaction_prediction/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction 2024-05-07T17:05:34,186 creating build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/data 2024-05-07T17:05:34,187 copying build/lib/syntheseus/reaction_prediction/data/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/data 2024-05-07T17:05:34,189 copying build/lib/syntheseus/reaction_prediction/data/reaction_sample.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/data 2024-05-07T17:05:34,191 copying build/lib/syntheseus/reaction_prediction/data/dataset.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/data 2024-05-07T17:05:34,193 creating build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/utils 2024-05-07T17:05:34,194 copying build/lib/syntheseus/reaction_prediction/utils/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/utils 2024-05-07T17:05:34,196 copying build/lib/syntheseus/reaction_prediction/utils/downloading.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/utils 2024-05-07T17:05:34,198 copying build/lib/syntheseus/reaction_prediction/utils/config.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/utils 2024-05-07T17:05:34,199 copying build/lib/syntheseus/reaction_prediction/utils/testing.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/utils 2024-05-07T17:05:34,201 copying build/lib/syntheseus/reaction_prediction/utils/misc.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/utils 2024-05-07T17:05:34,203 copying build/lib/syntheseus/reaction_prediction/utils/inference.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/utils 2024-05-07T17:05:34,205 copying build/lib/syntheseus/reaction_prediction/utils/parallel.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/utils 2024-05-07T17:05:34,207 copying build/lib/syntheseus/reaction_prediction/utils/model_loading.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/utils 2024-05-07T17:05:34,209 copying build/lib/syntheseus/reaction_prediction/utils/metrics.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/utils 2024-05-07T17:05:34,211 creating build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/cli 2024-05-07T17:05:34,212 copying build/lib/syntheseus/reaction_prediction/cli/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/cli 2024-05-07T17:05:34,215 creating build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/inference 2024-05-07T17:05:34,216 copying build/lib/syntheseus/reaction_prediction/inference/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/inference 2024-05-07T17:05:34,218 copying build/lib/syntheseus/reaction_prediction/inference/config.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/inference 2024-05-07T17:05:34,219 copying build/lib/syntheseus/reaction_prediction/inference/graph2edits.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/inference 2024-05-07T17:05:34,222 copying build/lib/syntheseus/reaction_prediction/inference/default_checkpoint_links.yml -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/inference 2024-05-07T17:05:34,223 copying build/lib/syntheseus/reaction_prediction/inference/mhnreact.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/inference 2024-05-07T17:05:34,226 copying build/lib/syntheseus/reaction_prediction/inference/toy_models.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/inference 2024-05-07T17:05:34,228 copying build/lib/syntheseus/reaction_prediction/inference/root_aligned.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/inference 2024-05-07T17:05:34,230 copying build/lib/syntheseus/reaction_prediction/inference/chemformer.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/inference 2024-05-07T17:05:34,232 copying build/lib/syntheseus/reaction_prediction/inference/megan.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/inference 2024-05-07T17:05:34,234 copying build/lib/syntheseus/reaction_prediction/inference/local_retro.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/inference 2024-05-07T17:05:34,236 copying build/lib/syntheseus/reaction_prediction/inference/base.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/inference 2024-05-07T17:05:34,238 copying build/lib/syntheseus/reaction_prediction/inference/retro_knn.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/inference 2024-05-07T17:05:34,240 copying build/lib/syntheseus/reaction_prediction/inference/gln.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/inference 2024-05-07T17:05:34,242 creating build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/models 2024-05-07T17:05:34,243 copying build/lib/syntheseus/reaction_prediction/models/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/models 2024-05-07T17:05:34,244 copying build/lib/syntheseus/reaction_prediction/models/retro_knn.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/models 2024-05-07T17:05:34,247 creating build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/chem 2024-05-07T17:05:34,248 copying build/lib/syntheseus/reaction_prediction/chem/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/chem 2024-05-07T17:05:34,249 copying build/lib/syntheseus/reaction_prediction/chem/utils.py -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/chem 2024-05-07T17:05:34,251 creating build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/environment_gln 2024-05-07T17:05:34,252 copying build/lib/syntheseus/reaction_prediction/environment_gln/Dockerfile -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/environment_gln 2024-05-07T17:05:34,254 copying build/lib/syntheseus/reaction_prediction/environment_gln/environment.yml -> build/bdist.linux-armv7l/wheel/syntheseus/reaction_prediction/environment_gln 2024-05-07T17:05:34,257 creating build/bdist.linux-armv7l/wheel/syntheseus/cli 2024-05-07T17:05:34,258 copying build/lib/syntheseus/cli/search_config.yml -> build/bdist.linux-armv7l/wheel/syntheseus/cli 2024-05-07T17:05:34,259 copying build/lib/syntheseus/cli/__init__.py -> build/bdist.linux-armv7l/wheel/syntheseus/cli 2024-05-07T17:05:34,261 copying build/lib/syntheseus/cli/search.py -> build/bdist.linux-armv7l/wheel/syntheseus/cli 2024-05-07T17:05:34,264 copying build/lib/syntheseus/cli/eval_single_step.py -> build/bdist.linux-armv7l/wheel/syntheseus/cli 2024-05-07T17:05:34,267 copying build/lib/syntheseus/cli/main.py -> build/bdist.linux-armv7l/wheel/syntheseus/cli 2024-05-07T17:05:34,268 copying build/lib/syntheseus/py.typed -> build/bdist.linux-armv7l/wheel/syntheseus 2024-05-07T17:05:34,270 running install_egg_info 2024-05-07T17:05:34,275 Copying syntheseus.egg-info to build/bdist.linux-armv7l/wheel/syntheseus-0.4.1-py3.11.egg-info 2024-05-07T17:05:34,286 running install_scripts 2024-05-07T17:05:34,307 creating build/bdist.linux-armv7l/wheel/syntheseus-0.4.1.dist-info/WHEEL 2024-05-07T17:05:34,310 creating '/tmp/pip-wheel-_oq2jq4m/.tmp-jf2zejou/syntheseus-0.4.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-07T17:05:34,312 adding 'syntheseus/__init__.py' 2024-05-07T17:05:34,313 adding 'syntheseus/py.typed' 2024-05-07T17:05:34,315 adding 'syntheseus/cli/__init__.py' 2024-05-07T17:05:34,318 adding 'syntheseus/cli/eval_single_step.py' 2024-05-07T17:05:34,320 adding 'syntheseus/cli/main.py' 2024-05-07T17:05:34,322 adding 'syntheseus/cli/search.py' 2024-05-07T17:05:34,324 adding 'syntheseus/cli/search_config.yml' 2024-05-07T17:05:34,325 adding 'syntheseus/interface/__init__.py' 2024-05-07T17:05:34,326 adding 'syntheseus/interface/bag.py' 2024-05-07T17:05:34,328 adding 'syntheseus/interface/models.py' 2024-05-07T17:05:34,330 adding 'syntheseus/interface/molecule.py' 2024-05-07T17:05:34,331 adding 'syntheseus/interface/reaction.py' 2024-05-07T17:05:34,332 adding 'syntheseus/interface/typed_dict.py' 2024-05-07T17:05:34,334 adding 'syntheseus/reaction_prediction/__init__.py' 2024-05-07T17:05:34,335 adding 'syntheseus/reaction_prediction/chem/__init__.py' 2024-05-07T17:05:34,336 adding 'syntheseus/reaction_prediction/chem/utils.py' 2024-05-07T17:05:34,338 adding 'syntheseus/reaction_prediction/cli/__init__.py' 2024-05-07T17:05:34,339 adding 'syntheseus/reaction_prediction/data/__init__.py' 2024-05-07T17:05:34,341 adding 'syntheseus/reaction_prediction/data/dataset.py' 2024-05-07T17:05:34,342 adding 'syntheseus/reaction_prediction/data/reaction_sample.py' 2024-05-07T17:05:34,343 adding 'syntheseus/reaction_prediction/environment_gln/Dockerfile' 2024-05-07T17:05:34,345 adding 'syntheseus/reaction_prediction/environment_gln/environment.yml' 2024-05-07T17:05:34,347 adding 'syntheseus/reaction_prediction/inference/__init__.py' 2024-05-07T17:05:34,348 adding 'syntheseus/reaction_prediction/inference/base.py' 2024-05-07T17:05:34,349 adding 'syntheseus/reaction_prediction/inference/chemformer.py' 2024-05-07T17:05:34,350 adding 'syntheseus/reaction_prediction/inference/config.py' 2024-05-07T17:05:34,352 adding 'syntheseus/reaction_prediction/inference/default_checkpoint_links.yml' 2024-05-07T17:05:34,353 adding 'syntheseus/reaction_prediction/inference/gln.py' 2024-05-07T17:05:34,355 adding 'syntheseus/reaction_prediction/inference/graph2edits.py' 2024-05-07T17:05:34,356 adding 'syntheseus/reaction_prediction/inference/local_retro.py' 2024-05-07T17:05:34,358 adding 'syntheseus/reaction_prediction/inference/megan.py' 2024-05-07T17:05:34,360 adding 'syntheseus/reaction_prediction/inference/mhnreact.py' 2024-05-07T17:05:34,361 adding 'syntheseus/reaction_prediction/inference/retro_knn.py' 2024-05-07T17:05:34,364 adding 'syntheseus/reaction_prediction/inference/root_aligned.py' 2024-05-07T17:05:34,365 adding 'syntheseus/reaction_prediction/inference/toy_models.py' 2024-05-07T17:05:34,367 adding 'syntheseus/reaction_prediction/models/__init__.py' 2024-05-07T17:05:34,368 adding 'syntheseus/reaction_prediction/models/retro_knn.py' 2024-05-07T17:05:34,370 adding 'syntheseus/reaction_prediction/utils/__init__.py' 2024-05-07T17:05:34,371 adding 'syntheseus/reaction_prediction/utils/config.py' 2024-05-07T17:05:34,372 adding 'syntheseus/reaction_prediction/utils/downloading.py' 2024-05-07T17:05:34,374 adding 'syntheseus/reaction_prediction/utils/inference.py' 2024-05-07T17:05:34,375 adding 'syntheseus/reaction_prediction/utils/metrics.py' 2024-05-07T17:05:34,376 adding 'syntheseus/reaction_prediction/utils/misc.py' 2024-05-07T17:05:34,378 adding 'syntheseus/reaction_prediction/utils/model_loading.py' 2024-05-07T17:05:34,379 adding 'syntheseus/reaction_prediction/utils/parallel.py' 2024-05-07T17:05:34,380 adding 'syntheseus/reaction_prediction/utils/testing.py' 2024-05-07T17:05:34,382 adding 'syntheseus/search/__init__.py' 2024-05-07T17:05:34,383 adding 'syntheseus/search/mol_inventory.py' 2024-05-07T17:05:34,385 adding 'syntheseus/search/visualization.py' 2024-05-07T17:05:34,386 adding 'syntheseus/search/algorithms/__init__.py' 2024-05-07T17:05:34,389 adding 'syntheseus/search/algorithms/base.py' 2024-05-07T17:05:34,390 adding 'syntheseus/search/algorithms/breadth_first.py' 2024-05-07T17:05:34,391 adding 'syntheseus/search/algorithms/mixins.py' 2024-05-07T17:05:34,394 adding 'syntheseus/search/algorithms/pdvn.py' 2024-05-07T17:05:34,395 adding 'syntheseus/search/algorithms/random.py' 2024-05-07T17:05:34,397 adding 'syntheseus/search/algorithms/best_first/__init__.py' 2024-05-07T17:05:34,399 adding 'syntheseus/search/algorithms/best_first/base.py' 2024-05-07T17:05:34,401 adding 'syntheseus/search/algorithms/best_first/retro_star.py' 2024-05-07T17:05:34,402 adding 'syntheseus/search/algorithms/mcts/__init__.py' 2024-05-07T17:05:34,404 adding 'syntheseus/search/algorithms/mcts/base.py' 2024-05-07T17:05:34,405 adding 'syntheseus/search/algorithms/mcts/molset.py' 2024-05-07T17:05:34,407 adding 'syntheseus/search/analysis/__init__.py' 2024-05-07T17:05:34,409 adding 'syntheseus/search/analysis/diversity.py' 2024-05-07T17:05:34,410 adding 'syntheseus/search/analysis/route_extraction.py' 2024-05-07T17:05:34,412 adding 'syntheseus/search/analysis/solution_time.py' 2024-05-07T17:05:34,413 adding 'syntheseus/search/graph/__init__.py' 2024-05-07T17:05:34,415 adding 'syntheseus/search/graph/and_or.py' 2024-05-07T17:05:34,416 adding 'syntheseus/search/graph/base_graph.py' 2024-05-07T17:05:34,418 adding 'syntheseus/search/graph/molset.py' 2024-05-07T17:05:34,420 adding 'syntheseus/search/graph/node.py' 2024-05-07T17:05:34,421 adding 'syntheseus/search/graph/route.py' 2024-05-07T17:05:34,423 adding 'syntheseus/search/graph/standardization.py' 2024-05-07T17:05:34,424 adding 'syntheseus/search/graph/message_passing/__init__.py' 2024-05-07T17:05:34,426 adding 'syntheseus/search/graph/message_passing/run.py' 2024-05-07T17:05:34,427 adding 'syntheseus/search/graph/message_passing/update_functions.py' 2024-05-07T17:05:34,429 adding 'syntheseus/search/node_evaluation/__init__.py' 2024-05-07T17:05:34,430 adding 'syntheseus/search/node_evaluation/base.py' 2024-05-07T17:05:34,431 adding 'syntheseus/search/node_evaluation/common.py' 2024-05-07T17:05:34,433 adding 'syntheseus/search/utils/__init__.py' 2024-05-07T17:05:34,434 adding 'syntheseus/search/utils/misc.py' 2024-05-07T17:05:34,436 adding 'syntheseus/tests/__init__.py' 2024-05-07T17:05:34,437 adding 'syntheseus/tests/conftest.py' 2024-05-07T17:05:34,439 adding 'syntheseus/tests/cli/__init__.py' 2024-05-07T17:05:34,440 adding 'syntheseus/tests/cli/test_cli.py' 2024-05-07T17:05:34,442 adding 'syntheseus/tests/cli/test_eval_single_step.py' 2024-05-07T17:05:34,443 adding 'syntheseus/tests/interface/__init__.py' 2024-05-07T17:05:34,445 adding 'syntheseus/tests/interface/test_bag.py' 2024-05-07T17:05:34,446 adding 'syntheseus/tests/interface/test_models.py' 2024-05-07T17:05:34,448 adding 'syntheseus/tests/interface/test_molecule.py' 2024-05-07T17:05:34,449 adding 'syntheseus/tests/interface/test_reaction.py' 2024-05-07T17:05:34,450 adding 'syntheseus/tests/interface/test_toy_models.py' 2024-05-07T17:05:34,452 adding 'syntheseus/tests/reaction_prediction/__init__.py' 2024-05-07T17:05:34,453 adding 'syntheseus/tests/reaction_prediction/chem/__init__.py' 2024-05-07T17:05:34,455 adding 'syntheseus/tests/reaction_prediction/chem/test_utils.py' 2024-05-07T17:05:34,456 adding 'syntheseus/tests/reaction_prediction/data/__init__.py' 2024-05-07T17:05:34,458 adding 'syntheseus/tests/reaction_prediction/data/test_dataset.py' 2024-05-07T17:05:34,460 adding 'syntheseus/tests/reaction_prediction/inference/__init__.py' 2024-05-07T17:05:34,461 adding 'syntheseus/tests/reaction_prediction/inference/test_models.py' 2024-05-07T17:05:34,463 adding 'syntheseus/tests/reaction_prediction/utils/__init__.py' 2024-05-07T17:05:34,464 adding 'syntheseus/tests/reaction_prediction/utils/test_misc.py' 2024-05-07T17:05:34,466 adding 'syntheseus/tests/search/__init__.py' 2024-05-07T17:05:34,468 adding 'syntheseus/tests/search/conftest.py' 2024-05-07T17:05:34,469 adding 'syntheseus/tests/search/test_mol_inventory.py' 2024-05-07T17:05:34,471 adding 'syntheseus/tests/search/test_visualization.py' 2024-05-07T17:05:34,473 adding 'syntheseus/tests/search/algorithms/__init__.py' 2024-05-07T17:05:34,476 adding 'syntheseus/tests/search/algorithms/test_base.py' 2024-05-07T17:05:34,478 adding 'syntheseus/tests/search/algorithms/test_best_first.py' 2024-05-07T17:05:34,480 adding 'syntheseus/tests/search/algorithms/test_breadth_first.py' 2024-05-07T17:05:34,482 adding 'syntheseus/tests/search/algorithms/test_mcts.py' 2024-05-07T17:05:34,484 adding 'syntheseus/tests/search/algorithms/test_pdvn.py' 2024-05-07T17:05:34,485 adding 'syntheseus/tests/search/algorithms/test_random.py' 2024-05-07T17:05:34,487 adding 'syntheseus/tests/search/analysis/__init__.py' 2024-05-07T17:05:34,488 adding 'syntheseus/tests/search/analysis/conftest.py' 2024-05-07T17:05:34,489 adding 'syntheseus/tests/search/analysis/test_diversity.py' 2024-05-07T17:05:34,491 adding 'syntheseus/tests/search/analysis/test_route_extraction.py' 2024-05-07T17:05:34,492 adding 'syntheseus/tests/search/analysis/test_solution_time.py' 2024-05-07T17:05:34,494 adding 'syntheseus/tests/search/graph/__init__.py' 2024-05-07T17:05:34,495 adding 'syntheseus/tests/search/graph/test_andor.py' 2024-05-07T17:05:34,497 adding 'syntheseus/tests/search/graph/test_base.py' 2024-05-07T17:05:34,498 adding 'syntheseus/tests/search/graph/test_message_passing.py' 2024-05-07T17:05:34,499 adding 'syntheseus/tests/search/graph/test_molset.py' 2024-05-07T17:05:34,501 adding 'syntheseus/tests/search/graph/test_route.py' 2024-05-07T17:05:34,502 adding 'syntheseus/tests/search/graph/test_standardization.py' 2024-05-07T17:05:34,503 adding 'syntheseus/tests/search/node_evaluation/__init__.py' 2024-05-07T17:05:34,505 adding 'syntheseus/tests/search/node_evaluation/test_common.py' 2024-05-07T17:05:34,507 adding 'syntheseus-0.4.1.dist-info/LICENSE' 2024-05-07T17:05:34,508 adding 'syntheseus-0.4.1.dist-info/METADATA' 2024-05-07T17:05:34,509 adding 'syntheseus-0.4.1.dist-info/WHEEL' 2024-05-07T17:05:34,510 adding 'syntheseus-0.4.1.dist-info/entry_points.txt' 2024-05-07T17:05:34,511 adding 'syntheseus-0.4.1.dist-info/top_level.txt' 2024-05-07T17:05:34,513 adding 'syntheseus-0.4.1.dist-info/RECORD' 2024-05-07T17:05:34,518 removing build/bdist.linux-armv7l/wheel 2024-05-07T17:05:34,688 Building wheel for syntheseus (pyproject.toml): finished with status 'done' 2024-05-07T17:05:34,696 Created wheel for syntheseus: filename=syntheseus-0.4.1-py3-none-any.whl size=165945 sha256=2168e2822758cbd6eb20ea6a5eb78ba06f50c01702c8ca0ed24c250e1d0a5c8c 2024-05-07T17:05:34,698 Stored in directory: /tmp/pip-ephem-wheel-cache-xyzw953_/wheels/ab/a2/69/2e6a330d3e68a2f8204d145952c165317fac861bcff666e1b0 2024-05-07T17:05:34,713 Successfully built syntheseus 2024-05-07T17:05:34,722 Removed build tracker: '/tmp/pip-build-tracker-p0mbil5_'