2024-06-07T04:28:25,727 Created temporary directory: /tmp/pip-build-tracker-pflnedgv
2024-06-07T04:28:25,728 Initialized build tracking at /tmp/pip-build-tracker-pflnedgv
2024-06-07T04:28:25,728 Created build tracker: /tmp/pip-build-tracker-pflnedgv
2024-06-07T04:28:25,729 Entered build tracker: /tmp/pip-build-tracker-pflnedgv
2024-06-07T04:28:25,730 Created temporary directory: /tmp/pip-wheel-cd0m1u7o
2024-06-07T04:28:25,733 Created temporary directory: /tmp/pip-ephem-wheel-cache-azx4bhjl
2024-06-07T04:28:25,755 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-06-07T04:28:25,758 2 location(s) to search for versions of mitywgs:
2024-06-07T04:28:25,758 * https://pypi.org/simple/mitywgs/
2024-06-07T04:28:25,758 * https://www.piwheels.org/simple/mitywgs/
2024-06-07T04:28:25,759 Fetching project page and analyzing links: https://pypi.org/simple/mitywgs/
2024-06-07T04:28:25,760 Getting page https://pypi.org/simple/mitywgs/
2024-06-07T04:28:25,761 Found index url https://pypi.org/simple/
2024-06-07T04:28:25,974 Fetched page https://pypi.org/simple/mitywgs/ as application/vnd.pypi.simple.v1+json
2024-06-07T04:28:25,978   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/95/5f/0fba9bf0dc8952226a3f354f63799ffc90c6316bd29655a65af24a4eb38a/mitywgs-0.1.0-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2024-06-07T04:28:25,979   Found link https://files.pythonhosted.org/packages/86/fc/4260dd9cae80420e003f605e31b54e73af7fb685625664d1ccf0435ac64e/mitywgs-0.1.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.1.0
2024-06-07T04:28:25,980   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/4f/5e/b43206082ca61da3e83d9e5c1e143c3de55f32c04146c81a70281726522a/mitywgs-0.1.1-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2024-06-07T04:28:25,981   Found link https://files.pythonhosted.org/packages/9b/c5/77f664847f6788589008debb792b3c5436e4b496a030cb90e2062aaa1086/mitywgs-0.1.1.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.1.1
2024-06-07T04:28:25,981   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/e5/b4/1512000bcbc0c4187fb9078309af272f45133fd51123b493a487b4712d3d/mitywgs-0.1.2-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2024-06-07T04:28:25,982   Found link https://files.pythonhosted.org/packages/9a/17/bd154ed0992c1dfe18326afd02587f9acc83c7f06d0d10c7b1953b4dbd26/mitywgs-0.1.2.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.1.2
2024-06-07T04:28:25,983   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/40/b3/d2199c137c3893b5935b31a46b771ca9cb02e01ea169646a124bc8b19bde/mitywgs-0.1.3-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2024-06-07T04:28:25,984   Found link https://files.pythonhosted.org/packages/09/89/ec808bf6dd1fb7095eda564ef732a03d2146981fa599f862b3d0ed07a687/mitywgs-0.1.3.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.1.3
2024-06-07T04:28:25,985   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/c7/ab/17446e81990597f0ede16c0426ba76037f02b440dc5d51a6b8dc9a208881/mitywgs-0.2.0-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2024-06-07T04:28:25,985   Found link https://files.pythonhosted.org/packages/c9/ab/7de2568d5ed11e067b0390fd31fa1d30eb099bce133b55cb0afed11c1986/mitywgs-0.2.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.2.0
2024-06-07T04:28:25,986   Found link https://files.pythonhosted.org/packages/1d/42/c1c72c18c8e20c698dde0e058896655b177d48e46693afd5f25a4820a8d0/mitywgs-0.2.1.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 0.2.1
2024-06-07T04:28:25,987   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/70/65/149da0fc3c6b39d585afe30be8e565acd57c30ab061098b91d24e4bf3b28/mitywgs-0.3.0-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4)
2024-06-07T04:28:25,988   Found link https://files.pythonhosted.org/packages/85/f2/da170c825d1453e9c350e288bd19018b54d9df4dc1c1d1fcb7332bbc67d2/mitywgs-0.3.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 0.3.0
2024-06-07T04:28:25,989   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/29/f0/3e335d7958a5d6d3dcf1dfba93594eec77bcf0aa9adde9d0978c0ff444bb/mitywgs-0.3.1-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4)
2024-06-07T04:28:25,990   Found link https://files.pythonhosted.org/packages/93/a8/845e11c50e4bf8459685b1fe4a3123c2495d573056c3e56a17c6e84d35c5/mitywgs-0.3.1.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 0.3.1
2024-06-07T04:28:25,990   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/1b/9e/ca91734f30aaf35c1b27ac388e8b333de771694b23c20559ab3c7469abe3/mitywgs-0.4.0-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4)
2024-06-07T04:28:25,991   Found link https://files.pythonhosted.org/packages/11/3e/0afdf01d6c7065637962c87ace18a33bfdd4c33a0685f255459a73c29662/mitywgs-0.4.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 0.4.0
2024-06-07T04:28:25,992   Found link https://files.pythonhosted.org/packages/27/00/b37d3d18ec330c45f5922187afc37eaa805a6182d8fa29954c29652068a7/mitywgs-1.0.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 1.0.0
2024-06-07T04:28:25,993   Found link https://files.pythonhosted.org/packages/8b/07/911f1a30fcd360a0861a2f6bb887f87a39b2d4cb788123cfbc3856e7f4de/mitywgs-1.1.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 1.1.0
2024-06-07T04:28:25,994 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitywgs/
2024-06-07T04:28:25,994 Getting page https://www.piwheels.org/simple/mitywgs/
2024-06-07T04:28:25,996 Found index url https://www.piwheels.org/simple/
2024-06-07T04:28:26,168 Fetched page https://www.piwheels.org/simple/mitywgs/ as text/html
2024-06-07T04:28:26,172   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-1.0.0-py3-none-any.whl#sha256=b347af79edf93d63124288c6875a3f9b20eb1e9c0386a990c7222166f8af2461 (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.4)
2024-06-07T04:28:26,173   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-0.4.0-py3-none-any.whl#sha256=f8865542ccd554aba04ac95d9728beee6034f5c1de378ccf783d530a0d4db8f9 (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.4)
2024-06-07T04:28:26,173   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-0.3.1-py3-none-any.whl#sha256=bd4183a43f9f7e27c073f03cb6d76dbb1e81448b2712bf4d2247c205bd0a5572 (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.4)
2024-06-07T04:28:26,174   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-0.3.0-py3-none-any.whl#sha256=0e8c010b09481b6c8a42d1cc2a56d0406491b1b3bd937d4b122d905315bb968f (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.4)
2024-06-07T04:28:26,175   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-0.2.1-py3-none-any.whl#sha256=b0e58845f593a26d29938af561d632fa6174a7428a90b1f2b49cf5cd8e1a3950 (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.4)
2024-06-07T04:28:26,175   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-0.2.0-py3-none-any.whl#sha256=59db3a95242366e4220ca17e0d453c893e0e0ac128f0ce98c494ad7ce76cf7d7 (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.3)
2024-06-07T04:28:26,176   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-0.1.3-py3-none-any.whl#sha256=0a374d9c6a2f3332d7807769be46d2afa345326c4820f6bc0997ca0aeb6f5f36 (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.3)
2024-06-07T04:28:26,177   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-0.1.2-py3-none-any.whl#sha256=a69913d9779386126f0b05545efd39978dfab19c637cd2a9536c436bd0b54d51 (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.3)
2024-06-07T04:28:26,177   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-0.1.1-py3-none-any.whl#sha256=a48d78fdf8a9fb6409720d417602a7e690c2b28aeff99462182df4d6fb9acf27 (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.3)
2024-06-07T04:28:26,177   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-0.1.0-py3-none-any.whl#sha256=90e433721fea608ae7c7843812b355412ebe36937935f260e72a87ab21f6aefd (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.3)
2024-06-07T04:28:26,178 Skipping link: not a file: https://www.piwheels.org/simple/mitywgs/
2024-06-07T04:28:26,178 Skipping link: not a file: https://pypi.org/simple/mitywgs/
2024-06-07T04:28:26,199 Given no hashes to check 1 links for project 'mitywgs': discarding no candidates
2024-06-07T04:28:26,219 Collecting mitywgs==1.1.0
2024-06-07T04:28:26,221   Created temporary directory: /tmp/pip-unpack-o034ixwq
2024-06-07T04:28:26,466   Downloading mitywgs-1.1.0.tar.gz (904 kB)
2024-06-07T04:28:26,808   Added mitywgs==1.1.0 from https://files.pythonhosted.org/packages/8b/07/911f1a30fcd360a0861a2f6bb887f87a39b2d4cb788123cfbc3856e7f4de/mitywgs-1.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-pflnedgv'
2024-06-07T04:28:26,810   Running setup.py (path:/tmp/pip-wheel-cd0m1u7o/mitywgs_a95036f512934a059fac240e667dcfba/setup.py) egg_info for package mitywgs
2024-06-07T04:28:26,811   Created temporary directory: /tmp/pip-pip-egg-info-bvurh8o3
2024-06-07T04:28:26,811   Preparing metadata (setup.py): started
2024-06-07T04:28:26,813   Running command python setup.py egg_info
2024-06-07T04:28:27,758   running egg_info
2024-06-07T04:28:27,759   creating /tmp/pip-pip-egg-info-bvurh8o3/mitywgs.egg-info
2024-06-07T04:28:27,786   writing /tmp/pip-pip-egg-info-bvurh8o3/mitywgs.egg-info/PKG-INFO
2024-06-07T04:28:27,789   writing dependency_links to /tmp/pip-pip-egg-info-bvurh8o3/mitywgs.egg-info/dependency_links.txt
2024-06-07T04:28:27,791   writing requirements to /tmp/pip-pip-egg-info-bvurh8o3/mitywgs.egg-info/requires.txt
2024-06-07T04:28:27,793   writing top-level names to /tmp/pip-pip-egg-info-bvurh8o3/mitywgs.egg-info/top_level.txt
2024-06-07T04:28:27,794   writing manifest file '/tmp/pip-pip-egg-info-bvurh8o3/mitywgs.egg-info/SOURCES.txt'
2024-06-07T04:28:27,913   reading manifest file '/tmp/pip-pip-egg-info-bvurh8o3/mitywgs.egg-info/SOURCES.txt'
2024-06-07T04:28:27,915   adding license file 'LICENSE.txt'
2024-06-07T04:28:27,919   writing manifest file '/tmp/pip-pip-egg-info-bvurh8o3/mitywgs.egg-info/SOURCES.txt'
2024-06-07T04:28:28,027   Preparing metadata (setup.py): finished with status 'done'
2024-06-07T04:28:28,032   Source in /tmp/pip-wheel-cd0m1u7o/mitywgs_a95036f512934a059fac240e667dcfba has version 1.1.0, which satisfies requirement mitywgs==1.1.0 from https://files.pythonhosted.org/packages/8b/07/911f1a30fcd360a0861a2f6bb887f87a39b2d4cb788123cfbc3856e7f4de/mitywgs-1.1.0.tar.gz
2024-06-07T04:28:28,033   Removed mitywgs==1.1.0 from https://files.pythonhosted.org/packages/8b/07/911f1a30fcd360a0861a2f6bb887f87a39b2d4cb788123cfbc3856e7f4de/mitywgs-1.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-pflnedgv'
2024-06-07T04:28:28,039 Created temporary directory: /tmp/pip-unpack-tqnnspct
2024-06-07T04:28:28,040 Created temporary directory: /tmp/pip-unpack-jj5e5q27
2024-06-07T04:28:28,049 Building wheels for collected packages: mitywgs
2024-06-07T04:28:28,053   Created temporary directory: /tmp/pip-wheel-zca4w7pe
2024-06-07T04:28:28,054   Building wheel for mitywgs (setup.py): started
2024-06-07T04:28:28,055   Destination directory: /tmp/pip-wheel-zca4w7pe
2024-06-07T04:28:28,056   Running command python setup.py bdist_wheel
2024-06-07T04:28:28,916   running bdist_wheel
2024-06-07T04:28:29,048   running build
2024-06-07T04:28:29,049   running build_py
2024-06-07T04:28:29,077   creating build
2024-06-07T04:28:29,077   creating build/lib
2024-06-07T04:28:29,078   creating build/lib/mitylib
2024-06-07T04:28:29,079   copying mitylib/report.py -> build/lib/mitylib
2024-06-07T04:28:29,082   copying mitylib/normalise.py -> build/lib/mitylib
2024-06-07T04:28:29,084   copying mitylib/merge.py -> build/lib/mitylib
2024-06-07T04:28:29,086   copying mitylib/_version.py -> build/lib/mitylib
2024-06-07T04:28:29,088   copying mitylib/call.py -> build/lib/mitylib
2024-06-07T04:28:29,090   copying mitylib/commands.py -> build/lib/mitylib
2024-06-07T04:28:29,093   copying mitylib/__init__.py -> build/lib/mitylib
2024-06-07T04:28:29,094   copying mitylib/util.py -> build/lib/mitylib
2024-06-07T04:28:29,096   running egg_info
2024-06-07T04:28:29,121   writing mitywgs.egg-info/PKG-INFO
2024-06-07T04:28:29,124   writing dependency_links to mitywgs.egg-info/dependency_links.txt
2024-06-07T04:28:29,126   writing requirements to mitywgs.egg-info/requires.txt
2024-06-07T04:28:29,127   writing top-level names to mitywgs.egg-info/top_level.txt
2024-06-07T04:28:29,163   reading manifest file 'mitywgs.egg-info/SOURCES.txt'
2024-06-07T04:28:29,166   adding license file 'LICENSE.txt'
2024-06-07T04:28:29,169   writing manifest file 'mitywgs.egg-info/SOURCES.txt'
2024-06-07T04:28:29,172   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mitylib.annot_chrm' is absent from the `packages` configuration.
2024-06-07T04:28:29,172   !!

2024-06-07T04:28:29,174           ********************************************************************************
2024-06-07T04:28:29,174           ############################
2024-06-07T04:28:29,175           # Package would be ignored #
2024-06-07T04:28:29,176           ############################
2024-06-07T04:28:29,176           Python recognizes 'mitylib.annot_chrm' as an importable package[^1],
2024-06-07T04:28:29,177           but it is absent from setuptools' `packages` configuration.

2024-06-07T04:28:29,178           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-07T04:28:29,179           package, please make sure that 'mitylib.annot_chrm' is explicitly added
2024-06-07T04:28:29,179           to the `packages` configuration field.

2024-06-07T04:28:29,180           Alternatively, you can also rely on setuptools' discovery methods
2024-06-07T04:28:29,181           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-07T04:28:29,182           instead of `find_packages(...)`/`find:`).

2024-06-07T04:28:29,183           You can read more about "package discovery" on setuptools documentation page:

2024-06-07T04:28:29,183           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-07T04:28:29,184           If you don't want 'mitylib.annot_chrm' to be distributed and are
2024-06-07T04:28:29,185           already explicitly excluding 'mitylib.annot_chrm' via
2024-06-07T04:28:29,186           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-07T04:28:29,186           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-07T04:28:29,187           combination with a more fine grained `package-data` configuration.

2024-06-07T04:28:29,188           You can read more about "package data files" on setuptools documentation page:

2024-06-07T04:28:29,189           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-07T04:28:29,190           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-07T04:28:29,191                 even if it does not contain any `.py` files.
2024-06-07T04:28:29,191                 On the other hand, currently there is no concept of package data
2024-06-07T04:28:29,192                 directory, all directories are treated like packages.
2024-06-07T04:28:29,192           ********************************************************************************

2024-06-07T04:28:29,194   !!
2024-06-07T04:28:29,195     check.warn(importable)
2024-06-07T04:28:29,195   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mitylib.annot_mt' is absent from the `packages` configuration.
2024-06-07T04:28:29,196   !!

2024-06-07T04:28:29,196           ********************************************************************************
2024-06-07T04:28:29,197           ############################
2024-06-07T04:28:29,197           # Package would be ignored #
2024-06-07T04:28:29,198           ############################
2024-06-07T04:28:29,198           Python recognizes 'mitylib.annot_mt' as an importable package[^1],
2024-06-07T04:28:29,199           but it is absent from setuptools' `packages` configuration.

2024-06-07T04:28:29,199           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-07T04:28:29,200           package, please make sure that 'mitylib.annot_mt' is explicitly added
2024-06-07T04:28:29,201           to the `packages` configuration field.

2024-06-07T04:28:29,202           Alternatively, you can also rely on setuptools' discovery methods
2024-06-07T04:28:29,202           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-07T04:28:29,202           instead of `find_packages(...)`/`find:`).

2024-06-07T04:28:29,203           You can read more about "package discovery" on setuptools documentation page:

2024-06-07T04:28:29,204           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-07T04:28:29,205           If you don't want 'mitylib.annot_mt' to be distributed and are
2024-06-07T04:28:29,206           already explicitly excluding 'mitylib.annot_mt' via
2024-06-07T04:28:29,206           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-07T04:28:29,207           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-07T04:28:29,207           combination with a more fine grained `package-data` configuration.

2024-06-07T04:28:29,208           You can read more about "package data files" on setuptools documentation page:

2024-06-07T04:28:29,209           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-07T04:28:29,211           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-07T04:28:29,211                 even if it does not contain any `.py` files.
2024-06-07T04:28:29,212                 On the other hand, currently there is no concept of package data
2024-06-07T04:28:29,212                 directory, all directories are treated like packages.
2024-06-07T04:28:29,213           ********************************************************************************

2024-06-07T04:28:29,215   !!
2024-06-07T04:28:29,215     check.warn(importable)
2024-06-07T04:28:29,216   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mitylib.config' is absent from the `packages` configuration.
2024-06-07T04:28:29,216   !!

2024-06-07T04:28:29,217           ********************************************************************************
2024-06-07T04:28:29,218           ############################
2024-06-07T04:28:29,218           # Package would be ignored #
2024-06-07T04:28:29,219           ############################
2024-06-07T04:28:29,220           Python recognizes 'mitylib.config' as an importable package[^1],
2024-06-07T04:28:29,220           but it is absent from setuptools' `packages` configuration.

2024-06-07T04:28:29,222           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-07T04:28:29,223           package, please make sure that 'mitylib.config' is explicitly added
2024-06-07T04:28:29,224           to the `packages` configuration field.

2024-06-07T04:28:29,229           Alternatively, you can also rely on setuptools' discovery methods
2024-06-07T04:28:29,229           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-07T04:28:29,230           instead of `find_packages(...)`/`find:`).

2024-06-07T04:28:29,231           You can read more about "package discovery" on setuptools documentation page:

2024-06-07T04:28:29,231           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-07T04:28:29,232           If you don't want 'mitylib.config' to be distributed and are
2024-06-07T04:28:29,232           already explicitly excluding 'mitylib.config' via
2024-06-07T04:28:29,233           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-07T04:28:29,233           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-07T04:28:29,234           combination with a more fine grained `package-data` configuration.

2024-06-07T04:28:29,235           You can read more about "package data files" on setuptools documentation page:

2024-06-07T04:28:29,236           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-07T04:28:29,237           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-07T04:28:29,238                 even if it does not contain any `.py` files.
2024-06-07T04:28:29,238                 On the other hand, currently there is no concept of package data
2024-06-07T04:28:29,238                 directory, all directories are treated like packages.
2024-06-07T04:28:29,239           ********************************************************************************

2024-06-07T04:28:29,240   !!
2024-06-07T04:28:29,240     check.warn(importable)
2024-06-07T04:28:29,241   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mitylib.reference' is absent from the `packages` configuration.
2024-06-07T04:28:29,241   !!

2024-06-07T04:28:29,242           ********************************************************************************
2024-06-07T04:28:29,242           ############################
2024-06-07T04:28:29,243           # Package would be ignored #
2024-06-07T04:28:29,243           ############################
2024-06-07T04:28:29,244           Python recognizes 'mitylib.reference' as an importable package[^1],
2024-06-07T04:28:29,244           but it is absent from setuptools' `packages` configuration.

2024-06-07T04:28:29,245           This leads to an ambiguous overall configuration. If you want to distribute this
2024-06-07T04:28:29,246           package, please make sure that 'mitylib.reference' is explicitly added
2024-06-07T04:28:29,246           to the `packages` configuration field.

2024-06-07T04:28:29,248           Alternatively, you can also rely on setuptools' discovery methods
2024-06-07T04:28:29,249           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-06-07T04:28:29,249           instead of `find_packages(...)`/`find:`).

2024-06-07T04:28:29,250           You can read more about "package discovery" on setuptools documentation page:

2024-06-07T04:28:29,251           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-06-07T04:28:29,252           If you don't want 'mitylib.reference' to be distributed and are
2024-06-07T04:28:29,253           already explicitly excluding 'mitylib.reference' via
2024-06-07T04:28:29,254           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-06-07T04:28:29,254           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-06-07T04:28:29,255           combination with a more fine grained `package-data` configuration.

2024-06-07T04:28:29,256           You can read more about "package data files" on setuptools documentation page:

2024-06-07T04:28:29,257           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-06-07T04:28:29,259           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-06-07T04:28:29,259                 even if it does not contain any `.py` files.
2024-06-07T04:28:29,260                 On the other hand, currently there is no concept of package data
2024-06-07T04:28:29,260                 directory, all directories are treated like packages.
2024-06-07T04:28:29,261           ********************************************************************************

2024-06-07T04:28:29,262   !!
2024-06-07T04:28:29,262     check.warn(importable)
2024-06-07T04:28:29,262   copying mitylib/mity -> build/lib/mitylib
2024-06-07T04:28:29,263   creating build/lib/mitylib/annot_chrm
2024-06-07T04:28:29,263   copying mitylib/annot_chrm/chrm_anticodon_positions.bed.gz -> build/lib/mitylib/annot_chrm
2024-06-07T04:28:29,264   copying mitylib/annot_chrm/chrm_anticodon_positions.bed.gz.tbi -> build/lib/mitylib/annot_chrm
2024-06-07T04:28:29,264   copying mitylib/annot_chrm/chrm_gtf_annotations.bed.gz -> build/lib/mitylib/annot_chrm
2024-06-07T04:28:29,265   copying mitylib/annot_chrm/chrm_gtf_annotations.bed.gz.tbi -> build/lib/mitylib/annot_chrm
2024-06-07T04:28:29,265   copying mitylib/annot_chrm/chrm_haplotype_data.vcf.gz -> build/lib/mitylib/annot_chrm
2024-06-07T04:28:29,266   copying mitylib/annot_chrm/chrm_haplotype_data.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2024-06-07T04:28:29,267   copying mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz -> build/lib/mitylib/annot_chrm
2024-06-07T04:28:29,268   copying mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2024-06-07T04:28:29,268   copying mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz -> build/lib/mitylib/annot_chrm
2024-06-07T04:28:29,269   copying mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz.tbi -> build/lib/mitylib/annot_chrm
2024-06-07T04:28:29,269   copying mitylib/annot_chrm/chrm_mitomap_panel_annotations.vcf.gz -> build/lib/mitylib/annot_chrm
2024-06-07T04:28:29,269   copying mitylib/annot_chrm/chrm_mitomap_panel_annotations.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2024-06-07T04:28:29,270   copying mitylib/annot_chrm/chrm_mitotip_score_fixed_del.vcf.gz -> build/lib/mitylib/annot_chrm
2024-06-07T04:28:29,270   copying mitylib/annot_chrm/chrm_mitotip_score_fixed_del.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2024-06-07T04:28:29,271   creating build/lib/mitylib/annot_mt
2024-06-07T04:28:29,271   copying mitylib/annot_mt/anticodon_positions.bed.gz -> build/lib/mitylib/annot_mt
2024-06-07T04:28:29,272   copying mitylib/annot_mt/anticodon_positions.bed.gz.tbi -> build/lib/mitylib/annot_mt
2024-06-07T04:28:29,273   copying mitylib/annot_mt/gtf_annotations.bed.gz -> build/lib/mitylib/annot_mt
2024-06-07T04:28:29,274   copying mitylib/annot_mt/gtf_annotations.bed.gz.tbi -> build/lib/mitylib/annot_mt
2024-06-07T04:28:29,275   copying mitylib/annot_mt/haplotype_data.vcf.gz -> build/lib/mitylib/annot_mt
2024-06-07T04:28:29,276   copying mitylib/annot_mt/haplotype_data.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2024-06-07T04:28:29,276   copying mitylib/annot_mt/mgrb_variants.vcf.gz -> build/lib/mitylib/annot_mt
2024-06-07T04:28:29,277   copying mitylib/annot_mt/mgrb_variants.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2024-06-07T04:28:29,277   copying mitylib/annot_mt/mito_dna_func_loc.bed.gz -> build/lib/mitylib/annot_mt
2024-06-07T04:28:29,278   copying mitylib/annot_mt/mito_dna_func_loc.bed.gz.tbi -> build/lib/mitylib/annot_mt
2024-06-07T04:28:29,279   copying mitylib/annot_mt/mitomap_panel_annotations.vcf.gz -> build/lib/mitylib/annot_mt
2024-06-07T04:28:29,279   copying mitylib/annot_mt/mitomap_panel_annotations.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2024-06-07T04:28:29,280   copying mitylib/annot_mt/mitotip_score_fixed_del.vcf.gz -> build/lib/mitylib/annot_mt
2024-06-07T04:28:29,284   copying mitylib/annot_mt/mitotip_score_fixed_del.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2024-06-07T04:28:29,286   creating build/lib/mitylib/config
2024-06-07T04:28:29,287   copying mitylib/config/report-config.yaml -> build/lib/mitylib/config
2024-06-07T04:28:29,289   copying mitylib/config/vcfanno-config-chrm.toml -> build/lib/mitylib/config
2024-06-07T04:28:29,291   copying mitylib/config/vcfanno-config-mt.toml -> build/lib/mitylib/config
2024-06-07T04:28:29,293   creating build/lib/mitylib/reference
2024-06-07T04:28:29,294   copying mitylib/reference/hg19.chrM.fa -> build/lib/mitylib/reference
2024-06-07T04:28:29,297   copying mitylib/reference/hg19.chrM.fa.fai -> build/lib/mitylib/reference
2024-06-07T04:28:29,298   copying mitylib/reference/hg19.dict -> build/lib/mitylib/reference
2024-06-07T04:28:29,301   copying mitylib/reference/hg19.genome -> build/lib/mitylib/reference
2024-06-07T04:28:29,303   copying mitylib/reference/hg38.chrM.fa -> build/lib/mitylib/reference
2024-06-07T04:28:29,306   copying mitylib/reference/hg38.chrM.fa.fai -> build/lib/mitylib/reference
2024-06-07T04:28:29,307   copying mitylib/reference/hg38.dict -> build/lib/mitylib/reference
2024-06-07T04:28:29,321   copying mitylib/reference/hg38.genome -> build/lib/mitylib/reference
2024-06-07T04:28:29,325   copying mitylib/reference/hs37d5.MT.fa -> build/lib/mitylib/reference
2024-06-07T04:28:29,328   copying mitylib/reference/hs37d5.MT.fa.fai -> build/lib/mitylib/reference
2024-06-07T04:28:29,330   copying mitylib/reference/hs37d5.dict -> build/lib/mitylib/reference
2024-06-07T04:28:29,332   copying mitylib/reference/hs37d5.genome -> build/lib/mitylib/reference
2024-06-07T04:28:29,334   copying mitylib/reference/mm10.chrM.fa -> build/lib/mitylib/reference
2024-06-07T04:28:29,337   copying mitylib/reference/mm10.chrM.fa.fai -> build/lib/mitylib/reference
2024-06-07T04:28:29,340   copying mitylib/reference/mm10.genome -> build/lib/mitylib/reference
2024-06-07T04:28:29,343   running build_scripts
2024-06-07T04:28:29,343   creating build/scripts-3.11
2024-06-07T04:28:29,344   copying and adjusting mitylib/mity -> build/scripts-3.11
2024-06-07T04:28:29,345   changing mode of build/scripts-3.11/mity from 644 to 755
2024-06-07T04:28:29,371   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-06-07T04:28:29,371   !!

2024-06-07T04:28:29,372           ********************************************************************************
2024-06-07T04:28:29,373           Please avoid running ``setup.py`` directly.
2024-06-07T04:28:29,373           Instead, use pypa/build, pypa/installer or other
2024-06-07T04:28:29,374           standards-based tools.

2024-06-07T04:28:29,375           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-06-07T04:28:29,376           ********************************************************************************

2024-06-07T04:28:29,377   !!
2024-06-07T04:28:29,377     self.initialize_options()
2024-06-07T04:28:29,398   installing to build/bdist.linux-armv7l/wheel
2024-06-07T04:28:29,399   running install
2024-06-07T04:28:29,423   running install_lib
2024-06-07T04:28:29,449   creating build/bdist.linux-armv7l
2024-06-07T04:28:29,449   creating build/bdist.linux-armv7l/wheel
2024-06-07T04:28:29,451   creating build/bdist.linux-armv7l/wheel/mitylib
2024-06-07T04:28:29,452   copying build/lib/mitylib/report.py -> build/bdist.linux-armv7l/wheel/mitylib
2024-06-07T04:28:29,455   creating build/bdist.linux-armv7l/wheel/mitylib/annot_chrm
2024-06-07T04:28:29,456   copying build/lib/mitylib/annot_chrm/chrm_mitomap_panel_annotations.vcf.gz -> build/bdist.linux-armv7l/wheel/mitylib/annot_chrm
2024-06-07T04:28:29,467   copying build/lib/mitylib/annot_chrm/chrm_haplotype_data.vcf.gz -> build/bdist.linux-armv7l/wheel/mitylib/annot_chrm
2024-06-07T04:28:29,470   copying build/lib/mitylib/annot_chrm/chrm_mitotip_score_fixed_del.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/mitylib/annot_chrm
2024-06-07T04:28:29,472   copying build/lib/mitylib/annot_chrm/chrm_anticodon_positions.bed.gz -> build/bdist.linux-armv7l/wheel/mitylib/annot_chrm
2024-06-07T04:28:29,474   copying build/lib/mitylib/annot_chrm/chrm_gtf_annotations.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/mitylib/annot_chrm
2024-06-07T04:28:29,475   copying build/lib/mitylib/annot_chrm/chrm_mitotip_score_fixed_del.vcf.gz -> build/bdist.linux-armv7l/wheel/mitylib/annot_chrm
2024-06-07T04:28:29,481   copying build/lib/mitylib/annot_chrm/chrm_haplotype_data.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/mitylib/annot_chrm
2024-06-07T04:28:29,486   copying build/lib/mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/mitylib/annot_chrm
2024-06-07T04:28:29,493   copying build/lib/mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz -> build/bdist.linux-armv7l/wheel/mitylib/annot_chrm
2024-06-07T04:28:29,497   copying build/lib/mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/mitylib/annot_chrm
2024-06-07T04:28:29,498   copying build/lib/mitylib/annot_chrm/chrm_anticodon_positions.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/mitylib/annot_chrm
2024-06-07T04:28:29,500   copying build/lib/mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/mitylib/annot_chrm
2024-06-07T04:28:29,502   copying build/lib/mitylib/annot_chrm/chrm_mitomap_panel_annotations.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/mitylib/annot_chrm
2024-06-07T04:28:29,504   copying build/lib/mitylib/annot_chrm/chrm_gtf_annotations.bed.gz -> build/bdist.linux-armv7l/wheel/mitylib/annot_chrm
2024-06-07T04:28:29,509   copying build/lib/mitylib/normalise.py -> build/bdist.linux-armv7l/wheel/mitylib
2024-06-07T04:28:29,511   copying build/lib/mitylib/merge.py -> build/bdist.linux-armv7l/wheel/mitylib
2024-06-07T04:28:29,514   copying build/lib/mitylib/_version.py -> build/bdist.linux-armv7l/wheel/mitylib
2024-06-07T04:28:29,516   copying build/lib/mitylib/call.py -> build/bdist.linux-armv7l/wheel/mitylib
2024-06-07T04:28:29,518   copying build/lib/mitylib/commands.py -> build/bdist.linux-armv7l/wheel/mitylib
2024-06-07T04:28:29,521   copying build/lib/mitylib/__init__.py -> build/bdist.linux-armv7l/wheel/mitylib
2024-06-07T04:28:29,523   creating build/bdist.linux-armv7l/wheel/mitylib/annot_mt
2024-06-07T04:28:29,524   copying build/lib/mitylib/annot_mt/haplotype_data.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/mitylib/annot_mt
2024-06-07T04:28:29,526   copying build/lib/mitylib/annot_mt/haplotype_data.vcf.gz -> build/bdist.linux-armv7l/wheel/mitylib/annot_mt
2024-06-07T04:28:29,531   copying build/lib/mitylib/annot_mt/mitotip_score_fixed_del.vcf.gz -> build/bdist.linux-armv7l/wheel/mitylib/annot_mt
2024-06-07T04:28:29,539   copying build/lib/mitylib/annot_mt/mito_dna_func_loc.bed.gz -> build/bdist.linux-armv7l/wheel/mitylib/annot_mt
2024-06-07T04:28:29,550   copying build/lib/mitylib/annot_mt/anticodon_positions.bed.gz -> build/bdist.linux-armv7l/wheel/mitylib/annot_mt
2024-06-07T04:28:29,558   copying build/lib/mitylib/annot_mt/mitomap_panel_annotations.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/mitylib/annot_mt
2024-06-07T04:28:29,560   copying build/lib/mitylib/annot_mt/gtf_annotations.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/mitylib/annot_mt
2024-06-07T04:28:29,562   copying build/lib/mitylib/annot_mt/mitotip_score_fixed_del.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/mitylib/annot_mt
2024-06-07T04:28:29,564   copying build/lib/mitylib/annot_mt/mitomap_panel_annotations.vcf.gz -> build/bdist.linux-armv7l/wheel/mitylib/annot_mt
2024-06-07T04:28:29,577   copying build/lib/mitylib/annot_mt/gtf_annotations.bed.gz -> build/bdist.linux-armv7l/wheel/mitylib/annot_mt
2024-06-07T04:28:29,585   copying build/lib/mitylib/annot_mt/mgrb_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/mitylib/annot_mt
2024-06-07T04:28:29,588   copying build/lib/mitylib/annot_mt/mgrb_variants.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/mitylib/annot_mt
2024-06-07T04:28:29,590   copying build/lib/mitylib/annot_mt/mito_dna_func_loc.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/mitylib/annot_mt
2024-06-07T04:28:29,592   copying build/lib/mitylib/annot_mt/anticodon_positions.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/mitylib/annot_mt
2024-06-07T04:28:29,595   copying build/lib/mitylib/mity -> build/bdist.linux-armv7l/wheel/mitylib
2024-06-07T04:28:29,598   creating build/bdist.linux-armv7l/wheel/mitylib/config
2024-06-07T04:28:29,599   copying build/lib/mitylib/config/vcfanno-config-chrm.toml -> build/bdist.linux-armv7l/wheel/mitylib/config
2024-06-07T04:28:29,601   copying build/lib/mitylib/config/report-config.yaml -> build/bdist.linux-armv7l/wheel/mitylib/config
2024-06-07T04:28:29,602   copying build/lib/mitylib/config/vcfanno-config-mt.toml -> build/bdist.linux-armv7l/wheel/mitylib/config
2024-06-07T04:28:29,604   copying build/lib/mitylib/util.py -> build/bdist.linux-armv7l/wheel/mitylib
2024-06-07T04:28:29,607   creating build/bdist.linux-armv7l/wheel/mitylib/reference
2024-06-07T04:28:29,607   copying build/lib/mitylib/reference/hg19.chrM.fa -> build/bdist.linux-armv7l/wheel/mitylib/reference
2024-06-07T04:28:29,610   copying build/lib/mitylib/reference/mm10.chrM.fa -> build/bdist.linux-armv7l/wheel/mitylib/reference
2024-06-07T04:28:29,612   copying build/lib/mitylib/reference/hs37d5.dict -> build/bdist.linux-armv7l/wheel/mitylib/reference
2024-06-07T04:28:29,614   copying build/lib/mitylib/reference/hg19.dict -> build/bdist.linux-armv7l/wheel/mitylib/reference
2024-06-07T04:28:29,617   copying build/lib/mitylib/reference/hg19.chrM.fa.fai -> build/bdist.linux-armv7l/wheel/mitylib/reference
2024-06-07T04:28:29,618   copying build/lib/mitylib/reference/hs37d5.MT.fa -> build/bdist.linux-armv7l/wheel/mitylib/reference
2024-06-07T04:28:29,621   copying build/lib/mitylib/reference/hg38.dict -> build/bdist.linux-armv7l/wheel/mitylib/reference
2024-06-07T04:28:29,636   copying build/lib/mitylib/reference/hs37d5.genome -> build/bdist.linux-armv7l/wheel/mitylib/reference
2024-06-07T04:28:29,638   copying build/lib/mitylib/reference/hg38.chrM.fa -> build/bdist.linux-armv7l/wheel/mitylib/reference
2024-06-07T04:28:29,641   copying build/lib/mitylib/reference/mm10.chrM.fa.fai -> build/bdist.linux-armv7l/wheel/mitylib/reference
2024-06-07T04:28:29,643   copying build/lib/mitylib/reference/hs37d5.MT.fa.fai -> build/bdist.linux-armv7l/wheel/mitylib/reference
2024-06-07T04:28:29,645   copying build/lib/mitylib/reference/mm10.genome -> build/bdist.linux-armv7l/wheel/mitylib/reference
2024-06-07T04:28:29,647   copying build/lib/mitylib/reference/hg38.chrM.fa.fai -> build/bdist.linux-armv7l/wheel/mitylib/reference
2024-06-07T04:28:29,649   copying build/lib/mitylib/reference/hg38.genome -> build/bdist.linux-armv7l/wheel/mitylib/reference
2024-06-07T04:28:29,657   copying build/lib/mitylib/reference/hg19.genome -> build/bdist.linux-armv7l/wheel/mitylib/reference
2024-06-07T04:28:29,663   running install_egg_info
2024-06-07T04:28:29,700   Copying mitywgs.egg-info to build/bdist.linux-armv7l/wheel/mitywgs-1.1.0-py3.11.egg-info
2024-06-07T04:28:29,710   running install_scripts
2024-06-07T04:28:29,711   creating build/bdist.linux-armv7l/wheel/mitywgs-1.1.0.data
2024-06-07T04:28:29,711   creating build/bdist.linux-armv7l/wheel/mitywgs-1.1.0.data/scripts
2024-06-07T04:28:29,712   copying build/scripts-3.11/mity -> build/bdist.linux-armv7l/wheel/mitywgs-1.1.0.data/scripts
2024-06-07T04:28:29,714   changing mode of build/bdist.linux-armv7l/wheel/mitywgs-1.1.0.data/scripts/mity to 755
2024-06-07T04:28:29,728   creating build/bdist.linux-armv7l/wheel/mitywgs-1.1.0.dist-info/WHEEL
2024-06-07T04:28:29,731   creating '/tmp/pip-wheel-zca4w7pe/mitywgs-1.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-06-07T04:28:29,733   adding 'mitylib/__init__.py'
2024-06-07T04:28:29,734   adding 'mitylib/_version.py'
2024-06-07T04:28:29,736   adding 'mitylib/call.py'
2024-06-07T04:28:29,738   adding 'mitylib/commands.py'
2024-06-07T04:28:29,740   adding 'mitylib/merge.py'
2024-06-07T04:28:29,741   adding 'mitylib/mity'
2024-06-07T04:28:29,743   adding 'mitylib/normalise.py'
2024-06-07T04:28:29,746   adding 'mitylib/report.py'
2024-06-07T04:28:29,747   adding 'mitylib/util.py'
2024-06-07T04:28:29,749   adding 'mitylib/annot_chrm/chrm_anticodon_positions.bed.gz'
2024-06-07T04:28:29,751   adding 'mitylib/annot_chrm/chrm_anticodon_positions.bed.gz.tbi'
2024-06-07T04:28:29,755   adding 'mitylib/annot_chrm/chrm_gtf_annotations.bed.gz'
2024-06-07T04:28:29,757   adding 'mitylib/annot_chrm/chrm_gtf_annotations.bed.gz.tbi'
2024-06-07T04:28:29,762   adding 'mitylib/annot_chrm/chrm_haplotype_data.vcf.gz'
2024-06-07T04:28:29,764   adding 'mitylib/annot_chrm/chrm_haplotype_data.vcf.gz.tbi'
2024-06-07T04:28:29,767   adding 'mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz'
2024-06-07T04:28:29,768   adding 'mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz.tbi'
2024-06-07T04:28:29,774   adding 'mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz'
2024-06-07T04:28:29,776   adding 'mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz.tbi'
2024-06-07T04:28:29,798   adding 'mitylib/annot_chrm/chrm_mitomap_panel_annotations.vcf.gz'
2024-06-07T04:28:29,801   adding 'mitylib/annot_chrm/chrm_mitomap_panel_annotations.vcf.gz.tbi'
2024-06-07T04:28:29,807   adding 'mitylib/annot_chrm/chrm_mitotip_score_fixed_del.vcf.gz'
2024-06-07T04:28:29,809   adding 'mitylib/annot_chrm/chrm_mitotip_score_fixed_del.vcf.gz.tbi'
2024-06-07T04:28:29,811   adding 'mitylib/annot_mt/anticodon_positions.bed.gz'
2024-06-07T04:28:29,812   adding 'mitylib/annot_mt/anticodon_positions.bed.gz.tbi'
2024-06-07T04:28:29,817   adding 'mitylib/annot_mt/gtf_annotations.bed.gz'
2024-06-07T04:28:29,818   adding 'mitylib/annot_mt/gtf_annotations.bed.gz.tbi'
2024-06-07T04:28:29,823   adding 'mitylib/annot_mt/haplotype_data.vcf.gz'
2024-06-07T04:28:29,825   adding 'mitylib/annot_mt/haplotype_data.vcf.gz.tbi'
2024-06-07T04:28:29,828   adding 'mitylib/annot_mt/mgrb_variants.vcf.gz'
2024-06-07T04:28:29,829   adding 'mitylib/annot_mt/mgrb_variants.vcf.gz.tbi'
2024-06-07T04:28:29,835   adding 'mitylib/annot_mt/mito_dna_func_loc.bed.gz'
2024-06-07T04:28:29,837   adding 'mitylib/annot_mt/mito_dna_func_loc.bed.gz.tbi'
2024-06-07T04:28:29,859   adding 'mitylib/annot_mt/mitomap_panel_annotations.vcf.gz'
2024-06-07T04:28:29,861   adding 'mitylib/annot_mt/mitomap_panel_annotations.vcf.gz.tbi'
2024-06-07T04:28:29,868   adding 'mitylib/annot_mt/mitotip_score_fixed_del.vcf.gz'
2024-06-07T04:28:29,869   adding 'mitylib/annot_mt/mitotip_score_fixed_del.vcf.gz.tbi'
2024-06-07T04:28:29,871   adding 'mitylib/config/report-config.yaml'
2024-06-07T04:28:29,872   adding 'mitylib/config/vcfanno-config-chrm.toml'
2024-06-07T04:28:29,873   adding 'mitylib/config/vcfanno-config-mt.toml'
2024-06-07T04:28:29,882   adding 'mitylib/reference/hg19.chrM.fa'
2024-06-07T04:28:29,883   adding 'mitylib/reference/hg19.chrM.fa.fai'
2024-06-07T04:28:29,884   adding 'mitylib/reference/hg19.dict'
2024-06-07T04:28:29,886   adding 'mitylib/reference/hg19.genome'
2024-06-07T04:28:29,894   adding 'mitylib/reference/hg38.chrM.fa'
2024-06-07T04:28:29,895   adding 'mitylib/reference/hg38.chrM.fa.fai'
2024-06-07T04:28:29,930   adding 'mitylib/reference/hg38.dict'
2024-06-07T04:28:29,943   adding 'mitylib/reference/hg38.genome'
2024-06-07T04:28:29,952   adding 'mitylib/reference/hs37d5.MT.fa'
2024-06-07T04:28:29,953   adding 'mitylib/reference/hs37d5.MT.fa.fai'
2024-06-07T04:28:29,955   adding 'mitylib/reference/hs37d5.dict'
2024-06-07T04:28:29,956   adding 'mitylib/reference/hs37d5.genome'
2024-06-07T04:28:29,964   adding 'mitylib/reference/mm10.chrM.fa'
2024-06-07T04:28:29,972   adding 'mitylib/reference/mm10.chrM.fa.fai'
2024-06-07T04:28:29,973   adding 'mitylib/reference/mm10.genome'
2024-06-07T04:28:29,976   adding 'mitywgs-1.1.0.data/scripts/mity'
2024-06-07T04:28:29,978   adding 'mitywgs-1.1.0.dist-info/LICENSE.txt'
2024-06-07T04:28:29,980   adding 'mitywgs-1.1.0.dist-info/METADATA'
2024-06-07T04:28:29,981   adding 'mitywgs-1.1.0.dist-info/WHEEL'
2024-06-07T04:28:29,982   adding 'mitywgs-1.1.0.dist-info/top_level.txt'
2024-06-07T04:28:29,983   adding 'mitywgs-1.1.0.dist-info/RECORD'
2024-06-07T04:28:30,009   removing build/bdist.linux-armv7l/wheel
2024-06-07T04:28:30,136   Building wheel for mitywgs (setup.py): finished with status 'done'
2024-06-07T04:28:30,148   Created wheel for mitywgs: filename=mitywgs-1.1.0-py3-none-any.whl size=909017 sha256=390a7b76c7bf3e68217de7b0e1f1d0d3ecf08dd0956f03160e32250c3778fa04
2024-06-07T04:28:30,149   Stored in directory: /tmp/pip-ephem-wheel-cache-azx4bhjl/wheels/0b/76/f4/2aaf312ae300b4cd581cfabf6fe876b97136cf42cadde08ce0
2024-06-07T04:28:30,164 Successfully built mitywgs
2024-06-07T04:28:30,206 Removed build tracker: '/tmp/pip-build-tracker-pflnedgv'