2024-07-13T15:52:43,859 Created temporary directory: /tmp/pip-build-tracker-jdz7zyg_ 2024-07-13T15:52:43,860 Initialized build tracking at /tmp/pip-build-tracker-jdz7zyg_ 2024-07-13T15:52:43,861 Created build tracker: /tmp/pip-build-tracker-jdz7zyg_ 2024-07-13T15:52:43,861 Entered build tracker: /tmp/pip-build-tracker-jdz7zyg_ 2024-07-13T15:52:43,861 Created temporary directory: /tmp/pip-wheel-90d1rpeg 2024-07-13T15:52:43,865 Created temporary directory: /tmp/pip-ephem-wheel-cache-ea9542nz 2024-07-13T15:52:43,889 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-13T15:52:43,893 2 location(s) to search for versions of bigphase: 2024-07-13T15:52:43,893 * https://pypi.org/simple/bigphase/ 2024-07-13T15:52:43,893 * https://www.piwheels.org/simple/bigphase/ 2024-07-13T15:52:43,893 Fetching project page and analyzing links: https://pypi.org/simple/bigphase/ 2024-07-13T15:52:43,894 Getting page https://pypi.org/simple/bigphase/ 2024-07-13T15:52:43,896 Found index url https://pypi.org/simple/ 2024-07-13T15:52:43,947 Fetched page https://pypi.org/simple/bigphase/ as application/vnd.pypi.simple.v1+json 2024-07-13T15:52:43,948 Found link https://files.pythonhosted.org/packages/a0/71/7839c0a22ba5cd0ac7768ac47b4cec82865f1fb0ef43b548cb79be88328b/bigphase-0.1.0.tar.gz (from https://pypi.org/simple/bigphase/), version: 0.1.0 2024-07-13T15:52:43,948 Fetching project page and analyzing links: https://www.piwheels.org/simple/bigphase/ 2024-07-13T15:52:43,949 Getting page https://www.piwheels.org/simple/bigphase/ 2024-07-13T15:52:43,950 Found index url https://www.piwheels.org/simple/ 2024-07-13T15:52:44,016 Fetched page https://www.piwheels.org/simple/bigphase/ as text/html 2024-07-13T15:52:44,017 Skipping link: not a file: https://www.piwheels.org/simple/bigphase/ 2024-07-13T15:52:44,017 Skipping link: not a file: https://pypi.org/simple/bigphase/ 2024-07-13T15:52:44,034 Given no hashes to check 1 links for project 'bigphase': discarding no candidates 2024-07-13T15:52:44,051 Collecting bigphase==0.1.0 2024-07-13T15:52:44,053 Created temporary directory: /tmp/pip-unpack-s4780c7r 2024-07-13T15:52:44,097 Downloading bigphase-0.1.0.tar.gz (125 kB) 2024-07-13T15:52:44,201 Added bigphase==0.1.0 from https://files.pythonhosted.org/packages/a0/71/7839c0a22ba5cd0ac7768ac47b4cec82865f1fb0ef43b548cb79be88328b/bigphase-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-jdz7zyg_' 2024-07-13T15:52:44,203 Running setup.py (path:/tmp/pip-wheel-90d1rpeg/bigphase_481241389896429bae938c9c6f0855d6/setup.py) egg_info for package bigphase 2024-07-13T15:52:44,204 Created temporary directory: /tmp/pip-pip-egg-info-pv7ifvdz 2024-07-13T15:52:44,204 Preparing metadata (setup.py): started 2024-07-13T15:52:44,205 Running command python setup.py egg_info 2024-07-13T15:52:45,344 running egg_info 2024-07-13T15:52:45,348 creating /tmp/pip-pip-egg-info-pv7ifvdz/BigphASE.egg-info 2024-07-13T15:52:45,372 writing /tmp/pip-pip-egg-info-pv7ifvdz/BigphASE.egg-info/PKG-INFO 2024-07-13T15:52:45,375 writing dependency_links to /tmp/pip-pip-egg-info-pv7ifvdz/BigphASE.egg-info/dependency_links.txt 2024-07-13T15:52:45,378 writing top-level names to /tmp/pip-pip-egg-info-pv7ifvdz/BigphASE.egg-info/top_level.txt 2024-07-13T15:52:45,379 writing manifest file '/tmp/pip-pip-egg-info-pv7ifvdz/BigphASE.egg-info/SOURCES.txt' 2024-07-13T15:52:45,456 reading manifest file '/tmp/pip-pip-egg-info-pv7ifvdz/BigphASE.egg-info/SOURCES.txt' 2024-07-13T15:52:45,458 reading manifest template 'MANIFEST.in' 2024-07-13T15:52:45,465 adding license file 'LICENSE' 2024-07-13T15:52:45,468 writing manifest file '/tmp/pip-pip-egg-info-pv7ifvdz/BigphASE.egg-info/SOURCES.txt' 2024-07-13T15:52:45,563 Preparing metadata (setup.py): finished with status 'done' 2024-07-13T15:52:45,567 Source in /tmp/pip-wheel-90d1rpeg/bigphase_481241389896429bae938c9c6f0855d6 has version 0.1.0, which satisfies requirement bigphase==0.1.0 from https://files.pythonhosted.org/packages/a0/71/7839c0a22ba5cd0ac7768ac47b4cec82865f1fb0ef43b548cb79be88328b/bigphase-0.1.0.tar.gz 2024-07-13T15:52:45,568 Removed bigphase==0.1.0 from https://files.pythonhosted.org/packages/a0/71/7839c0a22ba5cd0ac7768ac47b4cec82865f1fb0ef43b548cb79be88328b/bigphase-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-jdz7zyg_' 2024-07-13T15:52:45,572 Created temporary directory: /tmp/pip-unpack-zjxatjos 2024-07-13T15:52:45,573 Created temporary directory: /tmp/pip-unpack-o4xzoczw 2024-07-13T15:52:45,575 Building wheels for collected packages: bigphase 2024-07-13T15:52:45,578 Created temporary directory: /tmp/pip-wheel-c9rf49u8 2024-07-13T15:52:45,579 Building wheel for bigphase (setup.py): started 2024-07-13T15:52:45,580 Destination directory: /tmp/pip-wheel-c9rf49u8 2024-07-13T15:52:45,580 Running command python setup.py bdist_wheel 2024-07-13T15:52:46,619 running bdist_wheel 2024-07-13T15:52:46,689 running build 2024-07-13T15:52:46,689 running build_py 2024-07-13T15:52:46,716 creating build 2024-07-13T15:52:46,716 creating build/lib.linux-armv7l-cpython-39 2024-07-13T15:52:46,717 creating build/lib.linux-armv7l-cpython-39/BigphASE 2024-07-13T15:52:46,718 copying src/BigphASE/__init__.py -> build/lib.linux-armv7l-cpython-39/BigphASE 2024-07-13T15:52:46,720 copying src/BigphASE/options.py -> build/lib.linux-armv7l-cpython-39/BigphASE 2024-07-13T15:52:46,722 copying src/BigphASE/maker.py -> build/lib.linux-armv7l-cpython-39/BigphASE 2024-07-13T15:52:46,725 copying src/BigphASE/utils.py -> build/lib.linux-armv7l-cpython-39/BigphASE 2024-07-13T15:52:46,727 running egg_info 2024-07-13T15:52:46,784 writing src/BigphASE.egg-info/PKG-INFO 2024-07-13T15:52:46,787 writing dependency_links to src/BigphASE.egg-info/dependency_links.txt 2024-07-13T15:52:46,789 writing top-level names to src/BigphASE.egg-info/top_level.txt 2024-07-13T15:52:46,816 reading manifest file 'src/BigphASE.egg-info/SOURCES.txt' 2024-07-13T15:52:46,818 reading manifest template 'MANIFEST.in' 2024-07-13T15:52:46,825 adding license file 'LICENSE' 2024-07-13T15:52:46,827 writing manifest file 'src/BigphASE.egg-info/SOURCES.txt' 2024-07-13T15:52:46,830 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'BigphASE.delta2hap' is absent from the `packages` configuration. 2024-07-13T15:52:46,830 !! 2024-07-13T15:52:46,830 ******************************************************************************** 2024-07-13T15:52:46,831 ############################ 2024-07-13T15:52:46,831 # Package would be ignored # 2024-07-13T15:52:46,831 ############################ 2024-07-13T15:52:46,831 Python recognizes 'BigphASE.delta2hap' as an importable package[^1], 2024-07-13T15:52:46,831 but it is absent from setuptools' `packages` configuration. 2024-07-13T15:52:46,831 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-13T15:52:46,831 package, please make sure that 'BigphASE.delta2hap' is explicitly added 2024-07-13T15:52:46,832 to the `packages` configuration field. 2024-07-13T15:52:46,832 Alternatively, you can also rely on setuptools' discovery methods 2024-07-13T15:52:46,832 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-13T15:52:46,832 instead of `find_packages(...)`/`find:`). 2024-07-13T15:52:46,832 You can read more about "package discovery" on setuptools documentation page: 2024-07-13T15:52:46,833 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-13T15:52:46,833 If you don't want 'BigphASE.delta2hap' to be distributed and are 2024-07-13T15:52:46,833 already explicitly excluding 'BigphASE.delta2hap' via 2024-07-13T15:52:46,833 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-13T15:52:46,833 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-13T15:52:46,833 combination with a more fine grained `package-data` configuration. 2024-07-13T15:52:46,834 You can read more about "package data files" on setuptools documentation page: 2024-07-13T15:52:46,834 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-13T15:52:46,834 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-13T15:52:46,834 even if it does not contain any `.py` files. 2024-07-13T15:52:46,835 On the other hand, currently there is no concept of package data 2024-07-13T15:52:46,835 directory, all directories are treated like packages. 2024-07-13T15:52:46,835 ******************************************************************************** 2024-07-13T15:52:46,835 !! 2024-07-13T15:52:46,835 check.warn(importable) 2024-07-13T15:52:46,836 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'BigphASE.delta2hap.bin' is absent from the `packages` configuration. 2024-07-13T15:52:46,836 !! 2024-07-13T15:52:46,836 ******************************************************************************** 2024-07-13T15:52:46,836 ############################ 2024-07-13T15:52:46,836 # Package would be ignored # 2024-07-13T15:52:46,836 ############################ 2024-07-13T15:52:46,837 Python recognizes 'BigphASE.delta2hap.bin' as an importable package[^1], 2024-07-13T15:52:46,837 but it is absent from setuptools' `packages` configuration. 2024-07-13T15:52:46,837 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-13T15:52:46,837 package, please make sure that 'BigphASE.delta2hap.bin' is explicitly added 2024-07-13T15:52:46,837 to the `packages` configuration field. 2024-07-13T15:52:46,838 Alternatively, you can also rely on setuptools' discovery methods 2024-07-13T15:52:46,838 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-13T15:52:46,838 instead of `find_packages(...)`/`find:`). 2024-07-13T15:52:46,838 You can read more about "package discovery" on setuptools documentation page: 2024-07-13T15:52:46,838 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-13T15:52:46,839 If you don't want 'BigphASE.delta2hap.bin' to be distributed and are 2024-07-13T15:52:46,839 already explicitly excluding 'BigphASE.delta2hap.bin' via 2024-07-13T15:52:46,839 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-13T15:52:46,839 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-13T15:52:46,839 combination with a more fine grained `package-data` configuration. 2024-07-13T15:52:46,839 You can read more about "package data files" on setuptools documentation page: 2024-07-13T15:52:46,840 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-13T15:52:46,840 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-13T15:52:46,840 even if it does not contain any `.py` files. 2024-07-13T15:52:46,840 On the other hand, currently there is no concept of package data 2024-07-13T15:52:46,841 directory, all directories are treated like packages. 2024-07-13T15:52:46,842 ******************************************************************************** 2024-07-13T15:52:46,842 !! 2024-07-13T15:52:46,842 check.warn(importable) 2024-07-13T15:52:46,843 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'BigphASE.delta2hap.include' is absent from the `packages` configuration. 2024-07-13T15:52:46,843 !! 2024-07-13T15:52:46,843 ******************************************************************************** 2024-07-13T15:52:46,843 ############################ 2024-07-13T15:52:46,843 # Package would be ignored # 2024-07-13T15:52:46,844 ############################ 2024-07-13T15:52:46,844 Python recognizes 'BigphASE.delta2hap.include' as an importable package[^1], 2024-07-13T15:52:46,844 but it is absent from setuptools' `packages` configuration. 2024-07-13T15:52:46,844 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-13T15:52:46,844 package, please make sure that 'BigphASE.delta2hap.include' is explicitly added 2024-07-13T15:52:46,844 to the `packages` configuration field. 2024-07-13T15:52:46,845 Alternatively, you can also rely on setuptools' discovery methods 2024-07-13T15:52:46,845 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-13T15:52:46,845 instead of `find_packages(...)`/`find:`). 2024-07-13T15:52:46,845 You can read more about "package discovery" on setuptools documentation page: 2024-07-13T15:52:46,846 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-13T15:52:46,846 If you don't want 'BigphASE.delta2hap.include' to be distributed and are 2024-07-13T15:52:46,846 already explicitly excluding 'BigphASE.delta2hap.include' via 2024-07-13T15:52:46,846 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-13T15:52:46,846 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-13T15:52:46,846 combination with a more fine grained `package-data` configuration. 2024-07-13T15:52:46,847 You can read more about "package data files" on setuptools documentation page: 2024-07-13T15:52:46,847 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-13T15:52:46,847 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-13T15:52:46,848 even if it does not contain any `.py` files. 2024-07-13T15:52:46,848 On the other hand, currently there is no concept of package data 2024-07-13T15:52:46,848 directory, all directories are treated like packages. 2024-07-13T15:52:46,848 ******************************************************************************** 2024-07-13T15:52:46,848 !! 2024-07-13T15:52:46,848 check.warn(importable) 2024-07-13T15:52:46,848 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'BigphASE.delta2hap.src' is absent from the `packages` configuration. 2024-07-13T15:52:46,849 !! 2024-07-13T15:52:46,849 ******************************************************************************** 2024-07-13T15:52:46,849 ############################ 2024-07-13T15:52:46,849 # Package would be ignored # 2024-07-13T15:52:46,849 ############################ 2024-07-13T15:52:46,849 Python recognizes 'BigphASE.delta2hap.src' as an importable package[^1], 2024-07-13T15:52:46,850 but it is absent from setuptools' `packages` configuration. 2024-07-13T15:52:46,850 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-13T15:52:46,850 package, please make sure that 'BigphASE.delta2hap.src' is explicitly added 2024-07-13T15:52:46,850 to the `packages` configuration field. 2024-07-13T15:52:46,850 Alternatively, you can also rely on setuptools' discovery methods 2024-07-13T15:52:46,851 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-13T15:52:46,851 instead of `find_packages(...)`/`find:`). 2024-07-13T15:52:46,851 You can read more about "package discovery" on setuptools documentation page: 2024-07-13T15:52:46,851 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-13T15:52:46,852 If you don't want 'BigphASE.delta2hap.src' to be distributed and are 2024-07-13T15:52:46,852 already explicitly excluding 'BigphASE.delta2hap.src' via 2024-07-13T15:52:46,852 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-13T15:52:46,852 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-13T15:52:46,852 combination with a more fine grained `package-data` configuration. 2024-07-13T15:52:46,852 You can read more about "package data files" on setuptools documentation page: 2024-07-13T15:52:46,853 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-13T15:52:46,853 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-13T15:52:46,853 even if it does not contain any `.py` files. 2024-07-13T15:52:46,853 On the other hand, currently there is no concept of package data 2024-07-13T15:52:46,853 directory, all directories are treated like packages. 2024-07-13T15:52:46,854 ******************************************************************************** 2024-07-13T15:52:46,854 !! 2024-07-13T15:52:46,854 check.warn(importable) 2024-07-13T15:52:46,854 creating build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap 2024-07-13T15:52:46,854 copying src/BigphASE/delta2hap/CMakeLists.txt -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap 2024-07-13T15:52:46,855 creating build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/bin 2024-07-13T15:52:46,855 copying src/BigphASE/delta2hap/bin/delta2hap -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/bin 2024-07-13T15:52:46,855 creating build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include 2024-07-13T15:52:46,855 copying src/BigphASE/delta2hap/include/delta.h -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include 2024-07-13T15:52:46,855 copying src/BigphASE/delta2hap/include/redirect_to_pager.h -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include 2024-07-13T15:52:46,855 copying src/BigphASE/delta2hap/include/show-vcf.h -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include 2024-07-13T15:52:46,855 copying src/BigphASE/delta2hap/include/sw_alignscore.h -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include 2024-07-13T15:52:46,856 copying src/BigphASE/delta2hap/include/tigrinc.h -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include 2024-07-13T15:52:46,858 copying src/BigphASE/delta2hap/include/translate.h -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include 2024-07-13T15:52:46,861 creating build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src 2024-07-13T15:52:46,861 copying src/BigphASE/delta2hap/src/delta.cpp -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src 2024-07-13T15:52:46,865 copying src/BigphASE/delta2hap/src/delta2hap.cpp -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src 2024-07-13T15:52:46,867 copying src/BigphASE/delta2hap/src/tigrinc.cpp -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src 2024-07-13T15:52:46,870 copying src/BigphASE/delta2hap/src/translate.cpp -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src 2024-07-13T15:52:46,872 running build_ext 2024-07-13T15:52:46,884 Compiling src/BigphASE/delta2hap/src/delta2hap.cpp... 2024-07-13T15:52:49,987 Compiling src/BigphASE/delta2hap/src/delta.cpp... 2024-07-13T15:52:53,171 Compiling src/BigphASE/delta2hap/src/tigrinc.cpp... 2024-07-13T15:52:53,467 Compiling src/BigphASE/delta2hap/src/translate.cpp... 2024-07-13T15:52:53,595 Linking src/BigphASE/delta2hap/bin/delta2hap... 2024-07-13T15:52:54,125 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-07-13T15:52:54,126 !! 2024-07-13T15:52:54,126 ******************************************************************************** 2024-07-13T15:52:54,126 Please avoid running ``setup.py`` directly. 2024-07-13T15:52:54,126 Instead, use pypa/build, pypa/installer or other 2024-07-13T15:52:54,126 standards-based tools. 2024-07-13T15:52:54,127 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-07-13T15:52:54,127 ******************************************************************************** 2024-07-13T15:52:54,127 !! 2024-07-13T15:52:54,127 self.initialize_options() 2024-07-13T15:52:54,149 installing to build/bdist.linux-armv7l/wheel 2024-07-13T15:52:54,149 running install 2024-07-13T15:52:54,175 running install_lib 2024-07-13T15:52:54,198 creating build/bdist.linux-armv7l 2024-07-13T15:52:54,199 creating build/bdist.linux-armv7l/wheel 2024-07-13T15:52:54,200 creating build/bdist.linux-armv7l/wheel/BigphASE 2024-07-13T15:52:54,201 copying build/lib.linux-armv7l-cpython-39/BigphASE/__init__.py -> build/bdist.linux-armv7l/wheel/BigphASE 2024-07-13T15:52:54,203 copying build/lib.linux-armv7l-cpython-39/BigphASE/options.py -> build/bdist.linux-armv7l/wheel/BigphASE 2024-07-13T15:52:54,205 creating build/bdist.linux-armv7l/wheel/BigphASE/delta2hap 2024-07-13T15:52:54,207 creating build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/bin 2024-07-13T15:52:54,207 copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/bin/delta2hap -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/bin 2024-07-13T15:52:54,214 copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/CMakeLists.txt -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap 2024-07-13T15:52:54,216 creating build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src 2024-07-13T15:52:54,217 copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src/delta2hap.cpp -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src 2024-07-13T15:52:54,219 copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src/delta.cpp -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src 2024-07-13T15:52:54,222 copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src/tigrinc.cpp -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src 2024-07-13T15:52:54,224 copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src/translate.cpp -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src 2024-07-13T15:52:54,226 creating build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-13T15:52:54,227 copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include/redirect_to_pager.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-13T15:52:54,229 copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include/sw_alignscore.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-13T15:52:54,231 copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include/translate.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-13T15:52:54,234 copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include/tigrinc.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-13T15:52:54,235 copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include/show-vcf.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-13T15:52:54,237 copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include/delta.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-13T15:52:54,239 copying build/lib.linux-armv7l-cpython-39/BigphASE/maker.py -> build/bdist.linux-armv7l/wheel/BigphASE 2024-07-13T15:52:54,241 copying build/lib.linux-armv7l-cpython-39/BigphASE/utils.py -> build/bdist.linux-armv7l/wheel/BigphASE 2024-07-13T15:52:54,243 running install_egg_info 2024-07-13T15:52:54,272 Copying src/BigphASE.egg-info to build/bdist.linux-armv7l/wheel/BigphASE-0.1.0-py3.9.egg-info 2024-07-13T15:52:54,279 running install_scripts 2024-07-13T15:52:54,281 Removed directory /tmp/pip-wheel-90d1rpeg/bigphase_481241389896429bae938c9c6f0855d6/src/BigphASE/delta2hap/include 2024-07-13T15:52:54,284 Removed directory /tmp/pip-wheel-90d1rpeg/bigphase_481241389896429bae938c9c6f0855d6/src/BigphASE/delta2hap/src 2024-07-13T15:52:54,285 Removed file /tmp/pip-wheel-90d1rpeg/bigphase_481241389896429bae938c9c6f0855d6/src/BigphASE/delta2hap/CMakeLists.txt 2024-07-13T15:52:54,297 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2024-07-13T15:52:54,302 creating build/bdist.linux-armv7l/wheel/BigphASE-0.1.0.dist-info/WHEEL 2024-07-13T15:52:54,304 creating '/tmp/pip-wheel-c9rf49u8/BigphASE-0.1.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-13T15:52:54,306 adding 'BigphASE/__init__.py' 2024-07-13T15:52:54,308 adding 'BigphASE/maker.py' 2024-07-13T15:52:54,311 adding 'BigphASE/options.py' 2024-07-13T15:52:54,312 adding 'BigphASE/utils.py' 2024-07-13T15:52:54,314 adding 'BigphASE/delta2hap/CMakeLists.txt' 2024-07-13T15:52:54,360 adding 'BigphASE/delta2hap/bin/delta2hap' 2024-07-13T15:52:54,365 adding 'BigphASE/delta2hap/include/delta.h' 2024-07-13T15:52:54,366 adding 'BigphASE/delta2hap/include/redirect_to_pager.h' 2024-07-13T15:52:54,368 adding 'BigphASE/delta2hap/include/show-vcf.h' 2024-07-13T15:52:54,370 adding 'BigphASE/delta2hap/include/sw_alignscore.h' 2024-07-13T15:52:54,371 adding 'BigphASE/delta2hap/include/tigrinc.h' 2024-07-13T15:52:54,373 adding 'BigphASE/delta2hap/include/translate.h' 2024-07-13T15:52:54,378 adding 'BigphASE/delta2hap/src/delta.cpp' 2024-07-13T15:52:54,381 adding 'BigphASE/delta2hap/src/delta2hap.cpp' 2024-07-13T15:52:54,383 adding 'BigphASE/delta2hap/src/tigrinc.cpp' 2024-07-13T15:52:54,384 adding 'BigphASE/delta2hap/src/translate.cpp' 2024-07-13T15:52:54,391 adding 'BigphASE-0.1.0.dist-info/LICENSE' 2024-07-13T15:52:54,392 adding 'BigphASE-0.1.0.dist-info/METADATA' 2024-07-13T15:52:54,393 adding 'BigphASE-0.1.0.dist-info/WHEEL' 2024-07-13T15:52:54,394 adding 'BigphASE-0.1.0.dist-info/top_level.txt' 2024-07-13T15:52:54,395 adding 'BigphASE-0.1.0.dist-info/RECORD' 2024-07-13T15:52:54,398 removing build/bdist.linux-armv7l/wheel 2024-07-13T15:52:54,509 Building wheel for bigphase (setup.py): finished with status 'done' 2024-07-13T15:52:54,513 Created wheel for bigphase: filename=BigphASE-0.1.0-cp39-cp39-linux_armv7l.whl size=127301 sha256=0e6881ebbedd3f710e7e7ba01d62a9a975ba63d051f6a468a9c0f3503cafd156 2024-07-13T15:52:54,514 Stored in directory: /tmp/pip-ephem-wheel-cache-ea9542nz/wheels/f0/f6/98/7e3440b081c967a77b69a8d21777e1fecf9a7895fef83f1316 2024-07-13T15:52:54,527 Successfully built bigphase 2024-07-13T15:52:54,534 Removed build tracker: '/tmp/pip-build-tracker-jdz7zyg_'