2024-07-19T18:50:17,818 Created temporary directory: /tmp/pip-build-tracker-m84be7q2 2024-07-19T18:50:17,819 Initialized build tracking at /tmp/pip-build-tracker-m84be7q2 2024-07-19T18:50:17,820 Created build tracker: /tmp/pip-build-tracker-m84be7q2 2024-07-19T18:50:17,820 Entered build tracker: /tmp/pip-build-tracker-m84be7q2 2024-07-19T18:50:17,821 Created temporary directory: /tmp/pip-wheel-awp658xq 2024-07-19T18:50:17,824 Created temporary directory: /tmp/pip-ephem-wheel-cache-7m_9b1lp 2024-07-19T18:50:17,848 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-19T18:50:17,851 2 location(s) to search for versions of s4-clarity: 2024-07-19T18:50:17,851 * https://pypi.org/simple/s4-clarity/ 2024-07-19T18:50:17,851 * https://www.piwheels.org/simple/s4-clarity/ 2024-07-19T18:50:17,852 Fetching project page and analyzing links: https://pypi.org/simple/s4-clarity/ 2024-07-19T18:50:17,853 Getting page https://pypi.org/simple/s4-clarity/ 2024-07-19T18:50:17,854 Found index url https://pypi.org/simple/ 2024-07-19T18:50:18,067 Fetched page https://pypi.org/simple/s4-clarity/ as application/vnd.pypi.simple.v1+json 2024-07-19T18:50:18,072 Found link https://files.pythonhosted.org/packages/ca/a6/15811ae2d49be55805eb68370bb82b9f6311d7ca6a782586d73aa2c4b160/s4-clarity-1.0.0.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.0.0 2024-07-19T18:50:18,073 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/40/e7/f35bdd4be47093ab1f121ccd10def5d947e6336cbe0aa4f9dceb6ca64527/s4_clarity-1.0.0-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,074 Found link https://files.pythonhosted.org/packages/62/17/7f979ad240a007471c28cb3276afdbf3946c12ac67946475a87d54167359/s4-clarity-1.1.0.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.1.0 2024-07-19T18:50:18,075 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/66/43/7d2e646026ad872031accae960912aa55c403cf22cc318f1f4c63ec553f6/s4_clarity-1.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,076 Found link https://files.pythonhosted.org/packages/ed/e2/fb8982641b82d85e1c4452c7c23b5d0437f8a74db8fdcca930a36f4d7c8d/s4-clarity-1.1.1.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.1.1 2024-07-19T18:50:18,076 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/79/55/27c006c584837c96b0ca9e92554a136a2fb0a6008f135255974f881dcbc9/s4_clarity-1.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,077 Found link https://files.pythonhosted.org/packages/49/2e/c096956347d840ec8912fe92b3280d7a4a476f957fff39e89d568a41343b/s4-clarity-1.2.0.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.2.0 2024-07-19T18:50:18,078 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/cb/a9/429de0c2b424f4e6aedb691f5ccd48071a28d684e935e5945a79759066cc/s4_clarity-1.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,079 Found link https://files.pythonhosted.org/packages/39/0d/5485d7617dd139ad24503782ac60b68b3a028a4c7b8a264be0e8d0a4a003/s4-clarity-1.3.0.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.3.0 2024-07-19T18:50:18,080 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/22/95/3c8c96db916cf24fd50d55b8cf077f90f75ad6feaf044ddf728ee6ee4bfe/s4_clarity-1.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,081 Found link https://files.pythonhosted.org/packages/d9/0a/2ee9d57d52275e251a5e55339095076b9c683b48e75da5207f95ec001483/s4-clarity-1.3.1.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.3.1 2024-07-19T18:50:18,081 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/54/a3/9e9af29b79443cafdb3e3cc62f0cae7f1c6a981f7fa65c4f6d421fbbba4b/s4_clarity-1.3.1-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,083 Found link https://files.pythonhosted.org/packages/1a/6a/93ead5ae86425ec8e360bbbff6c5c5cb58cffbe8e26d700c88fc0f5101e5/s4-clarity-1.4.0.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.4.0 2024-07-19T18:50:18,083 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/1b/c7/96571d921f8bb14a129209ad5fb96a60f4124875b965ed37290455679014/s4_clarity-1.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,084 Found link https://files.pythonhosted.org/packages/9e/e8/25587a1146d55d7829518d4b43983efe075ed93ff9f1b4747bf4e467e034/s4-clarity-1.4.1.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.4.1 2024-07-19T18:50:18,084 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/51/2c/caa2597fec7ce02a3c7717d5bc11b36b93a67ba91c360b9a4b9af7b4da2c/s4_clarity-1.4.1-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,085 Found link https://files.pythonhosted.org/packages/ab/71/bd297dc30900153a5c1aa3862a0ce7ba291f473244fe4869a68f13c09218/s4-clarity-1.4.2.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.4.2 2024-07-19T18:50:18,086 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/a8/85/9f368fe5e045bec64c6930fc90a370b6d3ba5c90bf32a2e67e88df05f81d/s4_clarity-1.4.2-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,087 Found link https://files.pythonhosted.org/packages/c0/10/e87c357fffcdb7ca3444cb8601967cf7706639de5e93bd0096d30af7f978/s4-clarity-1.5.0.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.5.0 2024-07-19T18:50:18,087 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/ee/72/dcb6fac2bcec12aa9c700ff7bcf4904382de2bb0d8d1535b152ee471d5b2/s4_clarity-1.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,088 Skipping link: No binaries permitted for s4-clarity: https://files.pythonhosted.org/packages/2e/7f/8afd608be460bb300b1a40a1e12ad3f5c4b5ae0442866df89eb87f980ab2/s4_clarity-1.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,089 Found link https://files.pythonhosted.org/packages/ea/ad/90e4d0255c8680ea553f4ccb3ed727d7d9e4cdd0352b0b1b52af978182ec/s4_clarity-1.6.0.tar.gz (from https://pypi.org/simple/s4-clarity/) (requires-python:>=2.7), version: 1.6.0 2024-07-19T18:50:18,089 Fetching project page and analyzing links: https://www.piwheels.org/simple/s4-clarity/ 2024-07-19T18:50:18,090 Getting page https://www.piwheels.org/simple/s4-clarity/ 2024-07-19T18:50:18,091 Found index url https://www.piwheels.org/simple/ 2024-07-19T18:50:18,251 Fetched page https://www.piwheels.org/simple/s4-clarity/ as text/html 2024-07-19T18:50:18,255 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.5.0-py2.py3-none-any.whl#sha256=fa6f0ccdebce975c563b9d3e4969575ae312a74d2ade5d65d34e122e9bdb7cb3 (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,256 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.4.2-py2.py3-none-any.whl#sha256=43fbeffa2d2e499717c44d42919f36319e1901d2437238833de88998b28ee49e (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,256 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.4.1-py2.py3-none-any.whl#sha256=d87e770c57b548eb76008ba5e4bfc705658eb589d6218d9ee96ea8f4b2dd25fd (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,257 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.4.0-py2.py3-none-any.whl#sha256=d2497d5c55f816ca45971981af10a68ccd1381eaea9eabf1b98da1b26851f869 (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,258 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.3.1-py2.py3-none-any.whl#sha256=38d14284d66c6a7301c7275f777fd16156d3a877e2a0425ceb307e1ded81e0d1 (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,259 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.3.0-py2.py3-none-any.whl#sha256=1ce964f77b2d82c8da3fddd2e912a9a9fd55dede16dbd54a3cf5e64526876325 (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,259 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.2.0-py2.py3-none-any.whl#sha256=c1bb5beb2dcf13b7c05a5a10dfcdb94c12448b72ef7f35b956b7aff61cc7f538 (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,259 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.1.1-py2.py3-none-any.whl#sha256=bfefccc15c9657c25823896bffc2b82e5300da97f2209b73f5d1a4f197a06a22 (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,260 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.1.0-py2.py3-none-any.whl#sha256=308bc5fb7a88a7edfc147ebf8481d4e38616db9066133af7c29449bbce79f82d (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,260 Skipping link: No binaries permitted for s4-clarity: https://www.piwheels.org/simple/s4-clarity/s4_clarity-1.0.0-py2.py3-none-any.whl#sha256=a1614f912db7b25405378b6c5813693d1a7db1781d77030370e234890b508800 (from https://www.piwheels.org/simple/s4-clarity/) (requires-python:>=2.7) 2024-07-19T18:50:18,261 Skipping link: not a file: https://www.piwheels.org/simple/s4-clarity/ 2024-07-19T18:50:18,261 Skipping link: not a file: https://pypi.org/simple/s4-clarity/ 2024-07-19T18:50:18,283 Given no hashes to check 1 links for project 's4-clarity': discarding no candidates 2024-07-19T18:50:18,304 Collecting s4-clarity==1.6.0 2024-07-19T18:50:18,306 Created temporary directory: /tmp/pip-unpack-ad63gtp3 2024-07-19T18:50:18,519 Downloading s4_clarity-1.6.0.tar.gz (69 kB) 2024-07-19T18:50:18,698 Added s4-clarity==1.6.0 from https://files.pythonhosted.org/packages/ea/ad/90e4d0255c8680ea553f4ccb3ed727d7d9e4cdd0352b0b1b52af978182ec/s4_clarity-1.6.0.tar.gz to build tracker '/tmp/pip-build-tracker-m84be7q2' 2024-07-19T18:50:18,699 Running setup.py (path:/tmp/pip-wheel-awp658xq/s4-clarity_bf8e18a5a3f1448986a0c03d81ab36c5/setup.py) egg_info for package s4-clarity 2024-07-19T18:50:18,700 Created temporary directory: /tmp/pip-pip-egg-info-u0i5ng_0 2024-07-19T18:50:18,701 Preparing metadata (setup.py): started 2024-07-19T18:50:18,702 Running command python setup.py egg_info 2024-07-19T18:50:19,801 running egg_info 2024-07-19T18:50:19,803 creating /tmp/pip-pip-egg-info-u0i5ng_0/s4_clarity.egg-info 2024-07-19T18:50:19,828 writing /tmp/pip-pip-egg-info-u0i5ng_0/s4_clarity.egg-info/PKG-INFO 2024-07-19T18:50:19,831 writing dependency_links to /tmp/pip-pip-egg-info-u0i5ng_0/s4_clarity.egg-info/dependency_links.txt 2024-07-19T18:50:19,833 writing requirements to /tmp/pip-pip-egg-info-u0i5ng_0/s4_clarity.egg-info/requires.txt 2024-07-19T18:50:19,834 writing top-level names to /tmp/pip-pip-egg-info-u0i5ng_0/s4_clarity.egg-info/top_level.txt 2024-07-19T18:50:19,836 writing manifest file '/tmp/pip-pip-egg-info-u0i5ng_0/s4_clarity.egg-info/SOURCES.txt' 2024-07-19T18:50:19,926 reading manifest file '/tmp/pip-pip-egg-info-u0i5ng_0/s4_clarity.egg-info/SOURCES.txt' 2024-07-19T18:50:19,928 adding license file 'LICENSE' 2024-07-19T18:50:19,931 writing manifest file '/tmp/pip-pip-egg-info-u0i5ng_0/s4_clarity.egg-info/SOURCES.txt' 2024-07-19T18:50:20,048 Preparing metadata (setup.py): finished with status 'done' 2024-07-19T18:50:20,052 Source in /tmp/pip-wheel-awp658xq/s4-clarity_bf8e18a5a3f1448986a0c03d81ab36c5 has version 1.6.0, which satisfies requirement s4-clarity==1.6.0 from https://files.pythonhosted.org/packages/ea/ad/90e4d0255c8680ea553f4ccb3ed727d7d9e4cdd0352b0b1b52af978182ec/s4_clarity-1.6.0.tar.gz 2024-07-19T18:50:20,053 Removed s4-clarity==1.6.0 from https://files.pythonhosted.org/packages/ea/ad/90e4d0255c8680ea553f4ccb3ed727d7d9e4cdd0352b0b1b52af978182ec/s4_clarity-1.6.0.tar.gz from build tracker '/tmp/pip-build-tracker-m84be7q2' 2024-07-19T18:50:20,059 Created temporary directory: /tmp/pip-unpack-jsag777i 2024-07-19T18:50:20,060 Created temporary directory: /tmp/pip-unpack-iu4ylsz5 2024-07-19T18:50:20,071 Building wheels for collected packages: s4-clarity 2024-07-19T18:50:20,075 Created temporary directory: /tmp/pip-wheel-m8imq2_k 2024-07-19T18:50:20,076 Building wheel for s4-clarity (setup.py): started 2024-07-19T18:50:20,077 Destination directory: /tmp/pip-wheel-m8imq2_k 2024-07-19T18:50:20,077 Running command python setup.py bdist_wheel 2024-07-19T18:50:21,159 running bdist_wheel 2024-07-19T18:50:21,256 running build 2024-07-19T18:50:21,257 running build_py 2024-07-19T18:50:21,284 creating build 2024-07-19T18:50:21,285 creating build/lib 2024-07-19T18:50:21,285 creating build/lib/s4 2024-07-19T18:50:21,286 copying s4/__init__.py -> build/lib/s4 2024-07-19T18:50:21,289 creating build/lib/s4/clarity 2024-07-19T18:50:21,290 copying s4/clarity/types.py -> build/lib/s4/clarity 2024-07-19T18:50:21,292 copying s4/clarity/lab.py -> build/lib/s4/clarity 2024-07-19T18:50:21,294 copying s4/clarity/researcher.py -> build/lib/s4/clarity 2024-07-19T18:50:21,296 copying s4/clarity/instrument.py -> build/lib/s4/clarity 2024-07-19T18:50:21,298 copying s4/clarity/exception.py -> build/lib/s4/clarity 2024-07-19T18:50:21,299 copying s4/clarity/control_type.py -> build/lib/s4/clarity 2024-07-19T18:50:21,301 copying s4/clarity/lims.py -> build/lib/s4/clarity 2024-07-19T18:50:21,303 copying s4/clarity/reagent_type.py -> build/lib/s4/clarity 2024-07-19T18:50:21,305 copying s4/clarity/sample.py -> build/lib/s4/clarity 2024-07-19T18:50:21,307 copying s4/clarity/queue.py -> build/lib/s4/clarity 2024-07-19T18:50:21,309 copying s4/clarity/__init__.py -> build/lib/s4/clarity 2024-07-19T18:50:21,310 copying s4/clarity/reagent_lot.py -> build/lib/s4/clarity 2024-07-19T18:50:21,312 copying s4/clarity/project.py -> build/lib/s4/clarity 2024-07-19T18:50:21,314 copying s4/clarity/reagent_kit.py -> build/lib/s4/clarity 2024-07-19T18:50:21,315 copying s4/clarity/role.py -> build/lib/s4/clarity 2024-07-19T18:50:21,317 copying s4/clarity/console.py -> build/lib/s4/clarity 2024-07-19T18:50:21,318 copying s4/clarity/artifact.py -> build/lib/s4/clarity 2024-07-19T18:50:21,320 copying s4/clarity/step.py -> build/lib/s4/clarity 2024-07-19T18:50:21,323 copying s4/clarity/file.py -> build/lib/s4/clarity 2024-07-19T18:50:21,325 copying s4/clarity/container.py -> build/lib/s4/clarity 2024-07-19T18:50:21,327 copying s4/clarity/process.py -> build/lib/s4/clarity 2024-07-19T18:50:21,329 copying s4/clarity/permission.py -> build/lib/s4/clarity 2024-07-19T18:50:21,330 copying s4/clarity/iomaps.py -> build/lib/s4/clarity 2024-07-19T18:50:21,333 copying s4/clarity/routing.py -> build/lib/s4/clarity 2024-07-19T18:50:21,335 copying s4/clarity/version.py -> build/lib/s4/clarity 2024-07-19T18:50:21,337 creating build/lib/s4/clarity/scripts 2024-07-19T18:50:21,338 copying s4/clarity/scripts/genericscript.py -> build/lib/s4/clarity/scripts 2024-07-19T18:50:21,341 copying s4/clarity/scripts/htmllogging.py -> build/lib/s4/clarity/scripts 2024-07-19T18:50:21,342 copying s4/clarity/scripts/user_message_exception.py -> build/lib/s4/clarity/scripts 2024-07-19T18:50:21,344 copying s4/clarity/scripts/shell.py -> build/lib/s4/clarity/scripts 2024-07-19T18:50:21,346 copying s4/clarity/scripts/__init__.py -> build/lib/s4/clarity/scripts 2024-07-19T18:50:21,347 copying s4/clarity/scripts/stepepp.py -> build/lib/s4/clarity/scripts 2024-07-19T18:50:21,349 copying s4/clarity/scripts/derived_sample_automation.py -> build/lib/s4/clarity/scripts 2024-07-19T18:50:21,351 copying s4/clarity/scripts/file_argument_script.py -> build/lib/s4/clarity/scripts 2024-07-19T18:50:21,353 copying s4/clarity/scripts/workflow_test.py -> build/lib/s4/clarity/scripts 2024-07-19T18:50:21,354 copying s4/clarity/scripts/epp_output_formatter.py -> build/lib/s4/clarity/scripts 2024-07-19T18:50:21,356 copying s4/clarity/scripts/triggered_step_epp.py -> build/lib/s4/clarity/scripts 2024-07-19T18:50:21,358 creating build/lib/s4/clarity/configuration 2024-07-19T18:50:21,358 copying s4/clarity/configuration/process_type.py -> build/lib/s4/clarity/configuration 2024-07-19T18:50:21,360 copying s4/clarity/configuration/udf.py -> build/lib/s4/clarity/configuration 2024-07-19T18:50:21,362 copying s4/clarity/configuration/stage.py -> build/lib/s4/clarity/configuration 2024-07-19T18:50:21,364 copying s4/clarity/configuration/protocol.py -> build/lib/s4/clarity/configuration 2024-07-19T18:50:21,366 copying s4/clarity/configuration/__init__.py -> build/lib/s4/clarity/configuration 2024-07-19T18:50:21,367 copying s4/clarity/configuration/workflow.py -> build/lib/s4/clarity/configuration 2024-07-19T18:50:21,369 creating build/lib/s4/clarity/steputils 2024-07-19T18:50:21,370 copying s4/clarity/steputils/copyudfs.py -> build/lib/s4/clarity/steputils 2024-07-19T18:50:21,373 copying s4/clarity/steputils/placement_utils.py -> build/lib/s4/clarity/steputils 2024-07-19T18:50:21,374 copying s4/clarity/steputils/__init__.py -> build/lib/s4/clarity/steputils 2024-07-19T18:50:21,376 copying s4/clarity/steputils/actions.py -> build/lib/s4/clarity/steputils 2024-07-19T18:50:21,378 copying s4/clarity/steputils/step_average_utils.py -> build/lib/s4/clarity/steputils 2024-07-19T18:50:21,380 copying s4/clarity/steputils/step_runner.py -> build/lib/s4/clarity/steputils 2024-07-19T18:50:21,383 copying s4/clarity/steputils/file_utils.py -> build/lib/s4/clarity/steputils 2024-07-19T18:50:21,385 creating build/lib/s4/clarity/utils 2024-07-19T18:50:21,386 copying s4/clarity/utils/__init__.py -> build/lib/s4/clarity/utils 2024-07-19T18:50:21,388 copying s4/clarity/utils/ssh.py -> build/lib/s4/clarity/utils 2024-07-19T18:50:21,389 copying s4/clarity/utils/date_util.py -> build/lib/s4/clarity/utils 2024-07-19T18:50:21,391 copying s4/clarity/utils/sorting_util.py -> build/lib/s4/clarity/utils 2024-07-19T18:50:21,393 copying s4/clarity/utils/artifact_ancestry.py -> build/lib/s4/clarity/utils 2024-07-19T18:50:21,395 creating build/lib/s4/clarity/_internal 2024-07-19T18:50:21,396 copying s4/clarity/_internal/fields.py -> build/lib/s4/clarity/_internal 2024-07-19T18:50:21,398 copying s4/clarity/_internal/lazy_property.py -> build/lib/s4/clarity/_internal 2024-07-19T18:50:21,400 copying s4/clarity/_internal/__init__.py -> build/lib/s4/clarity/_internal 2024-07-19T18:50:21,402 copying s4/clarity/_internal/props.py -> build/lib/s4/clarity/_internal 2024-07-19T18:50:21,404 copying s4/clarity/_internal/fakesession.py -> build/lib/s4/clarity/_internal 2024-07-19T18:50:21,406 copying s4/clarity/_internal/element.py -> build/lib/s4/clarity/_internal 2024-07-19T18:50:21,408 copying s4/clarity/_internal/factory.py -> build/lib/s4/clarity/_internal 2024-07-19T18:50:21,411 copying s4/clarity/_internal/stepfactory.py -> build/lib/s4/clarity/_internal 2024-07-19T18:50:21,413 copying s4/clarity/_internal/udffactory.py -> build/lib/s4/clarity/_internal 2024-07-19T18:50:21,447 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-07-19T18:50:21,448 !! 2024-07-19T18:50:21,449 ******************************************************************************** 2024-07-19T18:50:21,450 Please avoid running ``setup.py`` directly. 2024-07-19T18:50:21,450 Instead, use pypa/build, pypa/installer or other 2024-07-19T18:50:21,450 standards-based tools. 2024-07-19T18:50:21,451 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-07-19T18:50:21,452 ******************************************************************************** 2024-07-19T18:50:21,453 !! 2024-07-19T18:50:21,453 self.initialize_options() 2024-07-19T18:50:21,474 installing to build/bdist.linux-armv7l/wheel 2024-07-19T18:50:21,475 running install 2024-07-19T18:50:21,499 running install_lib 2024-07-19T18:50:21,524 creating build/bdist.linux-armv7l 2024-07-19T18:50:21,524 creating build/bdist.linux-armv7l/wheel 2024-07-19T18:50:21,526 creating build/bdist.linux-armv7l/wheel/s4 2024-07-19T18:50:21,527 copying build/lib/s4/__init__.py -> build/bdist.linux-armv7l/wheel/s4 2024-07-19T18:50:21,529 creating build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,530 copying build/lib/s4/clarity/types.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,532 copying build/lib/s4/clarity/lab.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,534 copying build/lib/s4/clarity/researcher.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,536 copying build/lib/s4/clarity/instrument.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,537 copying build/lib/s4/clarity/exception.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,539 copying build/lib/s4/clarity/control_type.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,541 creating build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2024-07-19T18:50:21,542 copying build/lib/s4/clarity/scripts/genericscript.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2024-07-19T18:50:21,545 copying build/lib/s4/clarity/scripts/htmllogging.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2024-07-19T18:50:21,547 copying build/lib/s4/clarity/scripts/user_message_exception.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2024-07-19T18:50:21,548 copying build/lib/s4/clarity/scripts/shell.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2024-07-19T18:50:21,550 copying build/lib/s4/clarity/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2024-07-19T18:50:21,552 copying build/lib/s4/clarity/scripts/stepepp.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2024-07-19T18:50:21,554 copying build/lib/s4/clarity/scripts/derived_sample_automation.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2024-07-19T18:50:21,556 copying build/lib/s4/clarity/scripts/file_argument_script.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2024-07-19T18:50:21,558 copying build/lib/s4/clarity/scripts/workflow_test.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2024-07-19T18:50:21,559 copying build/lib/s4/clarity/scripts/epp_output_formatter.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2024-07-19T18:50:21,561 copying build/lib/s4/clarity/scripts/triggered_step_epp.py -> build/bdist.linux-armv7l/wheel/s4/clarity/scripts 2024-07-19T18:50:21,563 creating build/bdist.linux-armv7l/wheel/s4/clarity/configuration 2024-07-19T18:50:21,565 copying build/lib/s4/clarity/configuration/process_type.py -> build/bdist.linux-armv7l/wheel/s4/clarity/configuration 2024-07-19T18:50:21,567 copying build/lib/s4/clarity/configuration/udf.py -> build/bdist.linux-armv7l/wheel/s4/clarity/configuration 2024-07-19T18:50:21,569 copying build/lib/s4/clarity/configuration/stage.py -> build/bdist.linux-armv7l/wheel/s4/clarity/configuration 2024-07-19T18:50:21,571 copying build/lib/s4/clarity/configuration/protocol.py -> build/bdist.linux-armv7l/wheel/s4/clarity/configuration 2024-07-19T18:50:21,573 copying build/lib/s4/clarity/configuration/__init__.py -> build/bdist.linux-armv7l/wheel/s4/clarity/configuration 2024-07-19T18:50:21,575 copying build/lib/s4/clarity/configuration/workflow.py -> build/bdist.linux-armv7l/wheel/s4/clarity/configuration 2024-07-19T18:50:21,577 copying build/lib/s4/clarity/lims.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,579 copying build/lib/s4/clarity/reagent_type.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,581 copying build/lib/s4/clarity/sample.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,583 copying build/lib/s4/clarity/queue.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,584 copying build/lib/s4/clarity/__init__.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,586 copying build/lib/s4/clarity/reagent_lot.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,588 copying build/lib/s4/clarity/project.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,590 copying build/lib/s4/clarity/reagent_kit.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,591 copying build/lib/s4/clarity/role.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,593 creating build/bdist.linux-armv7l/wheel/s4/clarity/steputils 2024-07-19T18:50:21,594 copying build/lib/s4/clarity/steputils/copyudfs.py -> build/bdist.linux-armv7l/wheel/s4/clarity/steputils 2024-07-19T18:50:21,596 copying build/lib/s4/clarity/steputils/placement_utils.py -> build/bdist.linux-armv7l/wheel/s4/clarity/steputils 2024-07-19T18:50:21,598 copying build/lib/s4/clarity/steputils/__init__.py -> build/bdist.linux-armv7l/wheel/s4/clarity/steputils 2024-07-19T18:50:21,600 copying build/lib/s4/clarity/steputils/actions.py -> build/bdist.linux-armv7l/wheel/s4/clarity/steputils 2024-07-19T18:50:21,602 copying build/lib/s4/clarity/steputils/step_average_utils.py -> build/bdist.linux-armv7l/wheel/s4/clarity/steputils 2024-07-19T18:50:21,604 copying build/lib/s4/clarity/steputils/step_runner.py -> build/bdist.linux-armv7l/wheel/s4/clarity/steputils 2024-07-19T18:50:21,607 copying build/lib/s4/clarity/steputils/file_utils.py -> build/bdist.linux-armv7l/wheel/s4/clarity/steputils 2024-07-19T18:50:21,608 copying build/lib/s4/clarity/console.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,610 copying build/lib/s4/clarity/artifact.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,612 copying build/lib/s4/clarity/step.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,614 copying build/lib/s4/clarity/file.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,617 creating build/bdist.linux-armv7l/wheel/s4/clarity/utils 2024-07-19T18:50:21,618 copying build/lib/s4/clarity/utils/__init__.py -> build/bdist.linux-armv7l/wheel/s4/clarity/utils 2024-07-19T18:50:21,620 copying build/lib/s4/clarity/utils/ssh.py -> build/bdist.linux-armv7l/wheel/s4/clarity/utils 2024-07-19T18:50:21,622 copying build/lib/s4/clarity/utils/date_util.py -> build/bdist.linux-armv7l/wheel/s4/clarity/utils 2024-07-19T18:50:21,623 copying build/lib/s4/clarity/utils/sorting_util.py -> build/bdist.linux-armv7l/wheel/s4/clarity/utils 2024-07-19T18:50:21,625 copying build/lib/s4/clarity/utils/artifact_ancestry.py -> build/bdist.linux-armv7l/wheel/s4/clarity/utils 2024-07-19T18:50:21,627 copying build/lib/s4/clarity/container.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,630 creating build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2024-07-19T18:50:21,631 copying build/lib/s4/clarity/_internal/fields.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2024-07-19T18:50:21,633 copying build/lib/s4/clarity/_internal/lazy_property.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2024-07-19T18:50:21,635 copying build/lib/s4/clarity/_internal/__init__.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2024-07-19T18:50:21,637 copying build/lib/s4/clarity/_internal/props.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2024-07-19T18:50:21,640 copying build/lib/s4/clarity/_internal/fakesession.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2024-07-19T18:50:21,641 copying build/lib/s4/clarity/_internal/element.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2024-07-19T18:50:21,643 copying build/lib/s4/clarity/_internal/factory.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2024-07-19T18:50:21,646 copying build/lib/s4/clarity/_internal/stepfactory.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2024-07-19T18:50:21,647 copying build/lib/s4/clarity/_internal/udffactory.py -> build/bdist.linux-armv7l/wheel/s4/clarity/_internal 2024-07-19T18:50:21,649 copying build/lib/s4/clarity/process.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,651 copying build/lib/s4/clarity/permission.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,652 copying build/lib/s4/clarity/iomaps.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,654 copying build/lib/s4/clarity/routing.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,656 copying build/lib/s4/clarity/version.py -> build/bdist.linux-armv7l/wheel/s4/clarity 2024-07-19T18:50:21,658 running install_egg_info 2024-07-19T18:50:21,721 running egg_info 2024-07-19T18:50:21,745 writing s4_clarity.egg-info/PKG-INFO 2024-07-19T18:50:21,748 writing dependency_links to s4_clarity.egg-info/dependency_links.txt 2024-07-19T18:50:21,750 writing requirements to s4_clarity.egg-info/requires.txt 2024-07-19T18:50:21,751 writing top-level names to s4_clarity.egg-info/top_level.txt 2024-07-19T18:50:21,785 reading manifest file 's4_clarity.egg-info/SOURCES.txt' 2024-07-19T18:50:21,788 adding license file 'LICENSE' 2024-07-19T18:50:21,792 writing manifest file 's4_clarity.egg-info/SOURCES.txt' 2024-07-19T18:50:21,800 Copying s4_clarity.egg-info to build/bdist.linux-armv7l/wheel/s4_clarity-1.6.0-py3.11.egg-info 2024-07-19T18:50:21,810 running install_scripts 2024-07-19T18:50:21,823 creating build/bdist.linux-armv7l/wheel/s4_clarity-1.6.0.dist-info/WHEEL 2024-07-19T18:50:21,826 creating '/tmp/pip-wheel-m8imq2_k/s4_clarity-1.6.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-19T18:50:21,828 adding 's4/__init__.py' 2024-07-19T18:50:21,830 adding 's4/clarity/__init__.py' 2024-07-19T18:50:21,832 adding 's4/clarity/artifact.py' 2024-07-19T18:50:21,833 adding 's4/clarity/console.py' 2024-07-19T18:50:21,835 adding 's4/clarity/container.py' 2024-07-19T18:50:21,836 adding 's4/clarity/control_type.py' 2024-07-19T18:50:21,838 adding 's4/clarity/exception.py' 2024-07-19T18:50:21,840 adding 's4/clarity/file.py' 2024-07-19T18:50:21,841 adding 's4/clarity/instrument.py' 2024-07-19T18:50:21,842 adding 's4/clarity/iomaps.py' 2024-07-19T18:50:21,844 adding 's4/clarity/lab.py' 2024-07-19T18:50:21,846 adding 's4/clarity/lims.py' 2024-07-19T18:50:21,847 adding 's4/clarity/permission.py' 2024-07-19T18:50:21,848 adding 's4/clarity/process.py' 2024-07-19T18:50:21,849 adding 's4/clarity/project.py' 2024-07-19T18:50:21,851 adding 's4/clarity/queue.py' 2024-07-19T18:50:21,852 adding 's4/clarity/reagent_kit.py' 2024-07-19T18:50:21,853 adding 's4/clarity/reagent_lot.py' 2024-07-19T18:50:21,855 adding 's4/clarity/reagent_type.py' 2024-07-19T18:50:21,856 adding 's4/clarity/researcher.py' 2024-07-19T18:50:21,857 adding 's4/clarity/role.py' 2024-07-19T18:50:21,859 adding 's4/clarity/routing.py' 2024-07-19T18:50:21,860 adding 's4/clarity/sample.py' 2024-07-19T18:50:21,863 adding 's4/clarity/step.py' 2024-07-19T18:50:21,864 adding 's4/clarity/types.py' 2024-07-19T18:50:21,865 adding 's4/clarity/version.py' 2024-07-19T18:50:21,867 adding 's4/clarity/_internal/__init__.py' 2024-07-19T18:50:21,869 adding 's4/clarity/_internal/element.py' 2024-07-19T18:50:21,871 adding 's4/clarity/_internal/factory.py' 2024-07-19T18:50:21,872 adding 's4/clarity/_internal/fakesession.py' 2024-07-19T18:50:21,874 adding 's4/clarity/_internal/fields.py' 2024-07-19T18:50:21,875 adding 's4/clarity/_internal/lazy_property.py' 2024-07-19T18:50:21,878 adding 's4/clarity/_internal/props.py' 2024-07-19T18:50:21,880 adding 's4/clarity/_internal/stepfactory.py' 2024-07-19T18:50:21,881 adding 's4/clarity/_internal/udffactory.py' 2024-07-19T18:50:21,883 adding 's4/clarity/configuration/__init__.py' 2024-07-19T18:50:21,884 adding 's4/clarity/configuration/process_type.py' 2024-07-19T18:50:21,885 adding 's4/clarity/configuration/protocol.py' 2024-07-19T18:50:21,887 adding 's4/clarity/configuration/stage.py' 2024-07-19T18:50:21,888 adding 's4/clarity/configuration/udf.py' 2024-07-19T18:50:21,889 adding 's4/clarity/configuration/workflow.py' 2024-07-19T18:50:21,891 adding 's4/clarity/scripts/__init__.py' 2024-07-19T18:50:21,892 adding 's4/clarity/scripts/derived_sample_automation.py' 2024-07-19T18:50:21,894 adding 's4/clarity/scripts/epp_output_formatter.py' 2024-07-19T18:50:21,895 adding 's4/clarity/scripts/file_argument_script.py' 2024-07-19T18:50:21,897 adding 's4/clarity/scripts/genericscript.py' 2024-07-19T18:50:21,898 adding 's4/clarity/scripts/htmllogging.py' 2024-07-19T18:50:21,900 adding 's4/clarity/scripts/shell.py' 2024-07-19T18:50:21,901 adding 's4/clarity/scripts/stepepp.py' 2024-07-19T18:50:21,903 adding 's4/clarity/scripts/triggered_step_epp.py' 2024-07-19T18:50:21,904 adding 's4/clarity/scripts/user_message_exception.py' 2024-07-19T18:50:21,905 adding 's4/clarity/scripts/workflow_test.py' 2024-07-19T18:50:21,907 adding 's4/clarity/steputils/__init__.py' 2024-07-19T18:50:21,908 adding 's4/clarity/steputils/actions.py' 2024-07-19T18:50:21,910 adding 's4/clarity/steputils/copyudfs.py' 2024-07-19T18:50:21,911 adding 's4/clarity/steputils/file_utils.py' 2024-07-19T18:50:21,912 adding 's4/clarity/steputils/placement_utils.py' 2024-07-19T18:50:21,914 adding 's4/clarity/steputils/step_average_utils.py' 2024-07-19T18:50:21,917 adding 's4/clarity/steputils/step_runner.py' 2024-07-19T18:50:21,919 adding 's4/clarity/utils/__init__.py' 2024-07-19T18:50:21,920 adding 's4/clarity/utils/artifact_ancestry.py' 2024-07-19T18:50:21,921 adding 's4/clarity/utils/date_util.py' 2024-07-19T18:50:21,922 adding 's4/clarity/utils/sorting_util.py' 2024-07-19T18:50:21,924 adding 's4/clarity/utils/ssh.py' 2024-07-19T18:50:21,926 adding 's4_clarity-1.6.0.dist-info/LICENSE' 2024-07-19T18:50:21,927 adding 's4_clarity-1.6.0.dist-info/METADATA' 2024-07-19T18:50:21,928 adding 's4_clarity-1.6.0.dist-info/WHEEL' 2024-07-19T18:50:21,929 adding 's4_clarity-1.6.0.dist-info/top_level.txt' 2024-07-19T18:50:21,930 adding 's4_clarity-1.6.0.dist-info/RECORD' 2024-07-19T18:50:21,933 removing build/bdist.linux-armv7l/wheel 2024-07-19T18:50:22,068 Building wheel for s4-clarity (setup.py): finished with status 'done' 2024-07-19T18:50:22,071 Created wheel for s4-clarity: filename=s4_clarity-1.6.0-py2.py3-none-any.whl size=92604 sha256=2d67c3883259da79f5988d521926d24c5ac947f45f98cd7c092c23356bd95cb7 2024-07-19T18:50:22,073 Stored in directory: /tmp/pip-ephem-wheel-cache-7m_9b1lp/wheels/16/59/8f/3341ae179f6ec09525b1429578ee7eeeeefeb448f767f4cd8c 2024-07-19T18:50:22,085 Successfully built s4-clarity 2024-07-19T18:50:22,091 Removed build tracker: '/tmp/pip-build-tracker-m84be7q2'