2024-07-20T08:42:47,168 Created temporary directory: /tmp/pip-build-tracker-2tn3einq 2024-07-20T08:42:47,169 Initialized build tracking at /tmp/pip-build-tracker-2tn3einq 2024-07-20T08:42:47,170 Created build tracker: /tmp/pip-build-tracker-2tn3einq 2024-07-20T08:42:47,170 Entered build tracker: /tmp/pip-build-tracker-2tn3einq 2024-07-20T08:42:47,171 Created temporary directory: /tmp/pip-wheel-fspko61s 2024-07-20T08:42:47,174 Created temporary directory: /tmp/pip-ephem-wheel-cache-sgdyvigg 2024-07-20T08:42:47,196 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-20T08:42:47,199 2 location(s) to search for versions of bigphase: 2024-07-20T08:42:47,199 * https://pypi.org/simple/bigphase/ 2024-07-20T08:42:47,199 * https://www.piwheels.org/simple/bigphase/ 2024-07-20T08:42:47,200 Fetching project page and analyzing links: https://pypi.org/simple/bigphase/ 2024-07-20T08:42:47,201 Getting page https://pypi.org/simple/bigphase/ 2024-07-20T08:42:47,203 Found index url https://pypi.org/simple/ 2024-07-20T08:42:47,416 Fetched page https://pypi.org/simple/bigphase/ as application/vnd.pypi.simple.v1+json 2024-07-20T08:42:47,418 Found link https://files.pythonhosted.org/packages/a0/71/7839c0a22ba5cd0ac7768ac47b4cec82865f1fb0ef43b548cb79be88328b/bigphase-0.1.0.tar.gz (from https://pypi.org/simple/bigphase/), version: 0.1.0 2024-07-20T08:42:47,418 Found link https://files.pythonhosted.org/packages/50/8b/c53eaeb389ff9b6aa6eab1f861d875fd056f89443e6a029a0d6f2419d46c/bigphase-0.1.1.tar.gz (from https://pypi.org/simple/bigphase/), version: 0.1.1 2024-07-20T08:42:47,419 Fetching project page and analyzing links: https://www.piwheels.org/simple/bigphase/ 2024-07-20T08:42:47,420 Getting page https://www.piwheels.org/simple/bigphase/ 2024-07-20T08:42:47,421 Found index url https://www.piwheels.org/simple/ 2024-07-20T08:42:47,581 Fetched page https://www.piwheels.org/simple/bigphase/ as text/html 2024-07-20T08:42:47,582 Skipping link: No binaries permitted for bigphase: https://www.piwheels.org/simple/bigphase/BigphASE-0.1.0-cp39-cp39-linux_armv6l.whl#sha256=0e6881ebbedd3f710e7e7ba01d62a9a975ba63d051f6a468a9c0f3503cafd156 (from https://www.piwheels.org/simple/bigphase/) 2024-07-20T08:42:47,583 Skipping link: No binaries permitted for bigphase: https://www.piwheels.org/simple/bigphase/BigphASE-0.1.0-cp39-cp39-linux_armv7l.whl#sha256=0e6881ebbedd3f710e7e7ba01d62a9a975ba63d051f6a468a9c0f3503cafd156 (from https://www.piwheels.org/simple/bigphase/) 2024-07-20T08:42:47,584 Skipping link: not a file: https://www.piwheels.org/simple/bigphase/ 2024-07-20T08:42:47,584 Skipping link: not a file: https://pypi.org/simple/bigphase/ 2024-07-20T08:42:47,604 Given no hashes to check 1 links for project 'bigphase': discarding no candidates 2024-07-20T08:42:47,624 Collecting bigphase==0.1.1 2024-07-20T08:42:47,626 Created temporary directory: /tmp/pip-unpack-mtkvr7rm 2024-07-20T08:42:47,841 Downloading bigphase-0.1.1.tar.gz (125 kB) 2024-07-20T08:42:47,987 Added bigphase==0.1.1 from https://files.pythonhosted.org/packages/50/8b/c53eaeb389ff9b6aa6eab1f861d875fd056f89443e6a029a0d6f2419d46c/bigphase-0.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-2tn3einq' 2024-07-20T08:42:47,988 Running setup.py (path:/tmp/pip-wheel-fspko61s/bigphase_5072e34ed26f4a409d507948d3d39824/setup.py) egg_info for package bigphase 2024-07-20T08:42:47,989 Created temporary directory: /tmp/pip-pip-egg-info-gktsrhog 2024-07-20T08:42:47,990 Preparing metadata (setup.py): started 2024-07-20T08:42:47,991 Running command python setup.py egg_info 2024-07-20T08:42:49,081 running egg_info 2024-07-20T08:42:49,083 creating /tmp/pip-pip-egg-info-gktsrhog/BigphASE.egg-info 2024-07-20T08:42:49,109 writing /tmp/pip-pip-egg-info-gktsrhog/BigphASE.egg-info/PKG-INFO 2024-07-20T08:42:49,112 writing dependency_links to /tmp/pip-pip-egg-info-gktsrhog/BigphASE.egg-info/dependency_links.txt 2024-07-20T08:42:49,115 writing top-level names to /tmp/pip-pip-egg-info-gktsrhog/BigphASE.egg-info/top_level.txt 2024-07-20T08:42:49,117 writing manifest file '/tmp/pip-pip-egg-info-gktsrhog/BigphASE.egg-info/SOURCES.txt' 2024-07-20T08:42:49,204 reading manifest file '/tmp/pip-pip-egg-info-gktsrhog/BigphASE.egg-info/SOURCES.txt' 2024-07-20T08:42:49,206 reading manifest template 'MANIFEST.in' 2024-07-20T08:42:49,216 adding license file 'LICENSE' 2024-07-20T08:42:49,218 writing manifest file '/tmp/pip-pip-egg-info-gktsrhog/BigphASE.egg-info/SOURCES.txt' 2024-07-20T08:42:49,334 Preparing metadata (setup.py): finished with status 'done' 2024-07-20T08:42:49,338 Source in /tmp/pip-wheel-fspko61s/bigphase_5072e34ed26f4a409d507948d3d39824 has version 0.1.1, which satisfies requirement bigphase==0.1.1 from https://files.pythonhosted.org/packages/50/8b/c53eaeb389ff9b6aa6eab1f861d875fd056f89443e6a029a0d6f2419d46c/bigphase-0.1.1.tar.gz 2024-07-20T08:42:49,339 Removed bigphase==0.1.1 from https://files.pythonhosted.org/packages/50/8b/c53eaeb389ff9b6aa6eab1f861d875fd056f89443e6a029a0d6f2419d46c/bigphase-0.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-2tn3einq' 2024-07-20T08:42:49,343 Created temporary directory: /tmp/pip-unpack-zor3di2b 2024-07-20T08:42:49,344 Created temporary directory: /tmp/pip-unpack-31q46g76 2024-07-20T08:42:49,347 Building wheels for collected packages: bigphase 2024-07-20T08:42:49,351 Created temporary directory: /tmp/pip-wheel-tak_phmn 2024-07-20T08:42:49,351 Building wheel for bigphase (setup.py): started 2024-07-20T08:42:49,353 Destination directory: /tmp/pip-wheel-tak_phmn 2024-07-20T08:42:49,353 Running command python setup.py bdist_wheel 2024-07-20T08:42:50,647 running bdist_wheel 2024-07-20T08:42:50,722 running build 2024-07-20T08:42:50,723 running build_py 2024-07-20T08:42:50,750 creating build 2024-07-20T08:42:50,751 creating build/lib.linux-armv7l-cpython-311 2024-07-20T08:42:50,752 creating build/lib.linux-armv7l-cpython-311/BigphASE 2024-07-20T08:42:50,753 copying src/BigphASE/utils.py -> build/lib.linux-armv7l-cpython-311/BigphASE 2024-07-20T08:42:50,755 copying src/BigphASE/options.py -> build/lib.linux-armv7l-cpython-311/BigphASE 2024-07-20T08:42:50,758 copying src/BigphASE/__init__.py -> build/lib.linux-armv7l-cpython-311/BigphASE 2024-07-20T08:42:50,759 copying src/BigphASE/maker.py -> build/lib.linux-armv7l-cpython-311/BigphASE 2024-07-20T08:42:50,761 running egg_info 2024-07-20T08:42:50,821 writing src/BigphASE.egg-info/PKG-INFO 2024-07-20T08:42:50,825 writing dependency_links to src/BigphASE.egg-info/dependency_links.txt 2024-07-20T08:42:50,827 writing top-level names to src/BigphASE.egg-info/top_level.txt 2024-07-20T08:42:50,856 reading manifest file 'src/BigphASE.egg-info/SOURCES.txt' 2024-07-20T08:42:50,858 reading manifest template 'MANIFEST.in' 2024-07-20T08:42:50,865 adding license file 'LICENSE' 2024-07-20T08:42:50,867 writing manifest file 'src/BigphASE.egg-info/SOURCES.txt' 2024-07-20T08:42:50,869 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'BigphASE.delta2hap' is absent from the `packages` configuration. 2024-07-20T08:42:50,870 !! 2024-07-20T08:42:50,871 ******************************************************************************** 2024-07-20T08:42:50,871 ############################ 2024-07-20T08:42:50,872 # Package would be ignored # 2024-07-20T08:42:50,873 ############################ 2024-07-20T08:42:50,873 Python recognizes 'BigphASE.delta2hap' as an importable package[^1], 2024-07-20T08:42:50,874 but it is absent from setuptools' `packages` configuration. 2024-07-20T08:42:50,875 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-20T08:42:50,875 package, please make sure that 'BigphASE.delta2hap' is explicitly added 2024-07-20T08:42:50,876 to the `packages` configuration field. 2024-07-20T08:42:50,877 Alternatively, you can also rely on setuptools' discovery methods 2024-07-20T08:42:50,878 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-20T08:42:50,878 instead of `find_packages(...)`/`find:`). 2024-07-20T08:42:50,879 You can read more about "package discovery" on setuptools documentation page: 2024-07-20T08:42:50,880 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-20T08:42:50,881 If you don't want 'BigphASE.delta2hap' to be distributed and are 2024-07-20T08:42:50,881 already explicitly excluding 'BigphASE.delta2hap' via 2024-07-20T08:42:50,882 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-20T08:42:50,882 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-20T08:42:50,885 combination with a more fine grained `package-data` configuration. 2024-07-20T08:42:50,887 You can read more about "package data files" on setuptools documentation page: 2024-07-20T08:42:50,888 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-20T08:42:50,889 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-20T08:42:50,890 even if it does not contain any `.py` files. 2024-07-20T08:42:50,890 On the other hand, currently there is no concept of package data 2024-07-20T08:42:50,891 directory, all directories are treated like packages. 2024-07-20T08:42:50,891 ******************************************************************************** 2024-07-20T08:42:50,892 !! 2024-07-20T08:42:50,892 check.warn(importable) 2024-07-20T08:42:50,893 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'BigphASE.delta2hap.bin' is absent from the `packages` configuration. 2024-07-20T08:42:50,893 !! 2024-07-20T08:42:50,894 ******************************************************************************** 2024-07-20T08:42:50,895 ############################ 2024-07-20T08:42:50,895 # Package would be ignored # 2024-07-20T08:42:50,896 ############################ 2024-07-20T08:42:50,896 Python recognizes 'BigphASE.delta2hap.bin' as an importable package[^1], 2024-07-20T08:42:50,897 but it is absent from setuptools' `packages` configuration. 2024-07-20T08:42:50,898 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-20T08:42:50,898 package, please make sure that 'BigphASE.delta2hap.bin' is explicitly added 2024-07-20T08:42:50,899 to the `packages` configuration field. 2024-07-20T08:42:50,900 Alternatively, you can also rely on setuptools' discovery methods 2024-07-20T08:42:50,901 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-20T08:42:50,901 instead of `find_packages(...)`/`find:`). 2024-07-20T08:42:50,902 You can read more about "package discovery" on setuptools documentation page: 2024-07-20T08:42:50,903 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-20T08:42:50,904 If you don't want 'BigphASE.delta2hap.bin' to be distributed and are 2024-07-20T08:42:50,904 already explicitly excluding 'BigphASE.delta2hap.bin' via 2024-07-20T08:42:50,905 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-20T08:42:50,906 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-20T08:42:50,906 combination with a more fine grained `package-data` configuration. 2024-07-20T08:42:50,907 You can read more about "package data files" on setuptools documentation page: 2024-07-20T08:42:50,908 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-20T08:42:50,910 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-20T08:42:50,911 even if it does not contain any `.py` files. 2024-07-20T08:42:50,911 On the other hand, currently there is no concept of package data 2024-07-20T08:42:50,912 directory, all directories are treated like packages. 2024-07-20T08:42:50,913 ******************************************************************************** 2024-07-20T08:42:50,913 !! 2024-07-20T08:42:50,914 check.warn(importable) 2024-07-20T08:42:50,914 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'BigphASE.delta2hap.include' is absent from the `packages` configuration. 2024-07-20T08:42:50,915 !! 2024-07-20T08:42:50,915 ******************************************************************************** 2024-07-20T08:42:50,916 ############################ 2024-07-20T08:42:50,917 # Package would be ignored # 2024-07-20T08:42:50,917 ############################ 2024-07-20T08:42:50,917 Python recognizes 'BigphASE.delta2hap.include' as an importable package[^1], 2024-07-20T08:42:50,918 but it is absent from setuptools' `packages` configuration. 2024-07-20T08:42:50,919 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-20T08:42:50,919 package, please make sure that 'BigphASE.delta2hap.include' is explicitly added 2024-07-20T08:42:50,920 to the `packages` configuration field. 2024-07-20T08:42:50,921 Alternatively, you can also rely on setuptools' discovery methods 2024-07-20T08:42:50,921 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-20T08:42:50,922 instead of `find_packages(...)`/`find:`). 2024-07-20T08:42:50,922 You can read more about "package discovery" on setuptools documentation page: 2024-07-20T08:42:50,923 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-20T08:42:50,924 If you don't want 'BigphASE.delta2hap.include' to be distributed and are 2024-07-20T08:42:50,925 already explicitly excluding 'BigphASE.delta2hap.include' via 2024-07-20T08:42:50,926 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-20T08:42:50,926 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-20T08:42:50,927 combination with a more fine grained `package-data` configuration. 2024-07-20T08:42:50,928 You can read more about "package data files" on setuptools documentation page: 2024-07-20T08:42:50,929 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-20T08:42:50,931 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-20T08:42:50,931 even if it does not contain any `.py` files. 2024-07-20T08:42:50,932 On the other hand, currently there is no concept of package data 2024-07-20T08:42:50,933 directory, all directories are treated like packages. 2024-07-20T08:42:50,933 ******************************************************************************** 2024-07-20T08:42:50,934 !! 2024-07-20T08:42:50,935 check.warn(importable) 2024-07-20T08:42:50,935 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'BigphASE.delta2hap.src' is absent from the `packages` configuration. 2024-07-20T08:42:50,936 !! 2024-07-20T08:42:50,937 ******************************************************************************** 2024-07-20T08:42:50,937 ############################ 2024-07-20T08:42:50,938 # Package would be ignored # 2024-07-20T08:42:50,938 ############################ 2024-07-20T08:42:50,939 Python recognizes 'BigphASE.delta2hap.src' as an importable package[^1], 2024-07-20T08:42:50,940 but it is absent from setuptools' `packages` configuration. 2024-07-20T08:42:50,941 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-20T08:42:50,942 package, please make sure that 'BigphASE.delta2hap.src' is explicitly added 2024-07-20T08:42:50,943 to the `packages` configuration field. 2024-07-20T08:42:50,944 Alternatively, you can also rely on setuptools' discovery methods 2024-07-20T08:42:50,944 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-20T08:42:50,945 instead of `find_packages(...)`/`find:`). 2024-07-20T08:42:50,946 You can read more about "package discovery" on setuptools documentation page: 2024-07-20T08:42:50,947 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-20T08:42:50,947 If you don't want 'BigphASE.delta2hap.src' to be distributed and are 2024-07-20T08:42:50,948 already explicitly excluding 'BigphASE.delta2hap.src' via 2024-07-20T08:42:50,948 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-20T08:42:50,949 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-20T08:42:50,949 combination with a more fine grained `package-data` configuration. 2024-07-20T08:42:50,950 You can read more about "package data files" on setuptools documentation page: 2024-07-20T08:42:50,951 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-20T08:42:50,952 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-20T08:42:50,953 even if it does not contain any `.py` files. 2024-07-20T08:42:50,953 On the other hand, currently there is no concept of package data 2024-07-20T08:42:50,954 directory, all directories are treated like packages. 2024-07-20T08:42:50,954 ******************************************************************************** 2024-07-20T08:42:50,955 !! 2024-07-20T08:42:50,955 check.warn(importable) 2024-07-20T08:42:50,956 creating build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap 2024-07-20T08:42:50,957 copying src/BigphASE/delta2hap/CMakeLists.txt -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap 2024-07-20T08:42:50,957 creating build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/bin 2024-07-20T08:42:50,958 copying src/BigphASE/delta2hap/bin/delta2hap -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/bin 2024-07-20T08:42:50,958 creating build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include 2024-07-20T08:42:50,959 copying src/BigphASE/delta2hap/include/delta.h -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include 2024-07-20T08:42:50,959 copying src/BigphASE/delta2hap/include/redirect_to_pager.h -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include 2024-07-20T08:42:50,960 copying src/BigphASE/delta2hap/include/show-vcf.h -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include 2024-07-20T08:42:50,960 copying src/BigphASE/delta2hap/include/sw_alignscore.h -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include 2024-07-20T08:42:50,961 copying src/BigphASE/delta2hap/include/tigrinc.h -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include 2024-07-20T08:42:50,962 copying src/BigphASE/delta2hap/include/translate.h -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include 2024-07-20T08:42:50,962 creating build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src 2024-07-20T08:42:50,963 copying src/BigphASE/delta2hap/src/delta.cpp -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src 2024-07-20T08:42:50,963 copying src/BigphASE/delta2hap/src/delta2hap.cpp -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src 2024-07-20T08:42:50,964 copying src/BigphASE/delta2hap/src/tigrinc.cpp -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src 2024-07-20T08:42:50,964 copying src/BigphASE/delta2hap/src/translate.cpp -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src 2024-07-20T08:42:50,965 running build_ext 2024-07-20T08:42:50,966 Compiling src/BigphASE/delta2hap/src/delta2hap.cpp... 2024-07-20T08:42:54,565 Compiling src/BigphASE/delta2hap/src/delta.cpp... 2024-07-20T08:42:58,342 Compiling src/BigphASE/delta2hap/src/tigrinc.cpp... 2024-07-20T08:42:58,718 Compiling src/BigphASE/delta2hap/src/translate.cpp... 2024-07-20T08:42:58,861 Linking src/BigphASE/delta2hap/bin/delta2hap... 2024-07-20T08:42:59,256 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-07-20T08:42:59,257 !! 2024-07-20T08:42:59,258 ******************************************************************************** 2024-07-20T08:42:59,259 Please avoid running ``setup.py`` directly. 2024-07-20T08:42:59,259 Instead, use pypa/build, pypa/installer or other 2024-07-20T08:42:59,260 standards-based tools. 2024-07-20T08:42:59,261 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-07-20T08:42:59,262 ******************************************************************************** 2024-07-20T08:42:59,263 !! 2024-07-20T08:42:59,263 self.initialize_options() 2024-07-20T08:42:59,291 installing to build/bdist.linux-armv7l/wheel 2024-07-20T08:42:59,291 running install 2024-07-20T08:42:59,316 running install_lib 2024-07-20T08:42:59,341 creating build/bdist.linux-armv7l 2024-07-20T08:42:59,341 creating build/bdist.linux-armv7l/wheel 2024-07-20T08:42:59,343 creating build/bdist.linux-armv7l/wheel/BigphASE 2024-07-20T08:42:59,344 copying build/lib.linux-armv7l-cpython-311/BigphASE/utils.py -> build/bdist.linux-armv7l/wheel/BigphASE 2024-07-20T08:42:59,346 creating build/bdist.linux-armv7l/wheel/BigphASE/delta2hap 2024-07-20T08:42:59,348 creating build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src 2024-07-20T08:42:59,349 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src/delta.cpp -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src 2024-07-20T08:42:59,352 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src/translate.cpp -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src 2024-07-20T08:42:59,354 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src/delta2hap.cpp -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src 2024-07-20T08:42:59,357 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src/tigrinc.cpp -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src 2024-07-20T08:42:59,359 creating build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-20T08:42:59,360 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include/redirect_to_pager.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-20T08:42:59,362 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include/delta.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-20T08:42:59,364 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include/show-vcf.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-20T08:42:59,366 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include/sw_alignscore.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-20T08:42:59,368 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include/translate.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-20T08:42:59,371 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include/tigrinc.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-20T08:42:59,373 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/CMakeLists.txt -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap 2024-07-20T08:42:59,375 creating build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/bin 2024-07-20T08:42:59,376 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/bin/delta2hap -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/bin 2024-07-20T08:42:59,385 copying build/lib.linux-armv7l-cpython-311/BigphASE/options.py -> build/bdist.linux-armv7l/wheel/BigphASE 2024-07-20T08:42:59,387 copying build/lib.linux-armv7l-cpython-311/BigphASE/__init__.py -> build/bdist.linux-armv7l/wheel/BigphASE 2024-07-20T08:42:59,389 copying build/lib.linux-armv7l-cpython-311/BigphASE/maker.py -> build/bdist.linux-armv7l/wheel/BigphASE 2024-07-20T08:42:59,391 running install_egg_info 2024-07-20T08:42:59,421 Copying src/BigphASE.egg-info to build/bdist.linux-armv7l/wheel/BigphASE-0.1.1-py3.11.egg-info 2024-07-20T08:42:59,429 running install_scripts 2024-07-20T08:42:59,431 Removed directory /tmp/pip-wheel-fspko61s/bigphase_5072e34ed26f4a409d507948d3d39824/src/BigphASE/delta2hap/include 2024-07-20T08:42:59,434 Removed directory /tmp/pip-wheel-fspko61s/bigphase_5072e34ed26f4a409d507948d3d39824/src/BigphASE/delta2hap/src 2024-07-20T08:42:59,435 Removed file /tmp/pip-wheel-fspko61s/bigphase_5072e34ed26f4a409d507948d3d39824/src/BigphASE/delta2hap/CMakeLists.txt 2024-07-20T08:42:59,485 creating build/bdist.linux-armv7l/wheel/BigphASE-0.1.1.dist-info/WHEEL 2024-07-20T08:42:59,488 creating '/tmp/pip-wheel-tak_phmn/BigphASE-0.1.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-20T08:42:59,490 adding 'BigphASE/__init__.py' 2024-07-20T08:42:59,492 adding 'BigphASE/maker.py' 2024-07-20T08:42:59,494 adding 'BigphASE/options.py' 2024-07-20T08:42:59,495 adding 'BigphASE/utils.py' 2024-07-20T08:42:59,497 adding 'BigphASE/delta2hap/CMakeLists.txt' 2024-07-20T08:42:59,540 adding 'BigphASE/delta2hap/bin/delta2hap' 2024-07-20T08:42:59,545 adding 'BigphASE/delta2hap/include/delta.h' 2024-07-20T08:42:59,546 adding 'BigphASE/delta2hap/include/redirect_to_pager.h' 2024-07-20T08:42:59,547 adding 'BigphASE/delta2hap/include/show-vcf.h' 2024-07-20T08:42:59,550 adding 'BigphASE/delta2hap/include/sw_alignscore.h' 2024-07-20T08:42:59,551 adding 'BigphASE/delta2hap/include/tigrinc.h' 2024-07-20T08:42:59,553 adding 'BigphASE/delta2hap/include/translate.h' 2024-07-20T08:42:59,557 adding 'BigphASE/delta2hap/src/delta.cpp' 2024-07-20T08:42:59,560 adding 'BigphASE/delta2hap/src/delta2hap.cpp' 2024-07-20T08:42:59,562 adding 'BigphASE/delta2hap/src/tigrinc.cpp' 2024-07-20T08:42:59,563 adding 'BigphASE/delta2hap/src/translate.cpp' 2024-07-20T08:42:59,570 adding 'BigphASE-0.1.1.dist-info/LICENSE' 2024-07-20T08:42:59,571 adding 'BigphASE-0.1.1.dist-info/METADATA' 2024-07-20T08:42:59,572 adding 'BigphASE-0.1.1.dist-info/WHEEL' 2024-07-20T08:42:59,573 adding 'BigphASE-0.1.1.dist-info/top_level.txt' 2024-07-20T08:42:59,574 adding 'BigphASE-0.1.1.dist-info/RECORD' 2024-07-20T08:42:59,577 removing build/bdist.linux-armv7l/wheel 2024-07-20T08:42:59,702 Building wheel for bigphase (setup.py): finished with status 'done' 2024-07-20T08:42:59,706 Created wheel for bigphase: filename=BigphASE-0.1.1-cp311-cp311-linux_armv7l.whl size=127299 sha256=a2ccfb0a324109f26c210cb3a9c63f82446370a03b6d184e03d2c81d61f67aa9 2024-07-20T08:42:59,708 Stored in directory: /tmp/pip-ephem-wheel-cache-sgdyvigg/wheels/3b/b1/4f/2140c3abcd7816c8635acd1a0b24f16c20afa1e8a3e1c58f39 2024-07-20T08:42:59,718 Successfully built bigphase 2024-07-20T08:42:59,724 Removed build tracker: '/tmp/pip-build-tracker-2tn3einq'