2024-07-21T15:40:08,669 Created temporary directory: /tmp/pip-build-tracker-aneb0x79 2024-07-21T15:40:08,670 Initialized build tracking at /tmp/pip-build-tracker-aneb0x79 2024-07-21T15:40:08,671 Created build tracker: /tmp/pip-build-tracker-aneb0x79 2024-07-21T15:40:08,671 Entered build tracker: /tmp/pip-build-tracker-aneb0x79 2024-07-21T15:40:08,672 Created temporary directory: /tmp/pip-wheel-19zzce3g 2024-07-21T15:40:08,675 Created temporary directory: /tmp/pip-ephem-wheel-cache-v9wxiojx 2024-07-21T15:40:08,697 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-21T15:40:08,700 2 location(s) to search for versions of bigphase: 2024-07-21T15:40:08,700 * https://pypi.org/simple/bigphase/ 2024-07-21T15:40:08,700 * https://www.piwheels.org/simple/bigphase/ 2024-07-21T15:40:08,701 Fetching project page and analyzing links: https://pypi.org/simple/bigphase/ 2024-07-21T15:40:08,702 Getting page https://pypi.org/simple/bigphase/ 2024-07-21T15:40:08,703 Found index url https://pypi.org/simple/ 2024-07-21T15:40:08,918 Fetched page https://pypi.org/simple/bigphase/ as application/vnd.pypi.simple.v1+json 2024-07-21T15:40:08,920 Found link https://files.pythonhosted.org/packages/a0/71/7839c0a22ba5cd0ac7768ac47b4cec82865f1fb0ef43b548cb79be88328b/bigphase-0.1.0.tar.gz (from https://pypi.org/simple/bigphase/), version: 0.1.0 2024-07-21T15:40:08,920 Found link https://files.pythonhosted.org/packages/50/8b/c53eaeb389ff9b6aa6eab1f861d875fd056f89443e6a029a0d6f2419d46c/bigphase-0.1.1.tar.gz (from https://pypi.org/simple/bigphase/), version: 0.1.1 2024-07-21T15:40:08,921 Found link https://files.pythonhosted.org/packages/2a/03/4c965f0d9e09ec76164ab6db236b98535a87595472baf194e218af849b9f/bigphase-0.1.2.tar.gz (from https://pypi.org/simple/bigphase/), version: 0.1.2 2024-07-21T15:40:08,922 Fetching project page and analyzing links: https://www.piwheels.org/simple/bigphase/ 2024-07-21T15:40:08,922 Getting page https://www.piwheels.org/simple/bigphase/ 2024-07-21T15:40:08,924 Found index url https://www.piwheels.org/simple/ 2024-07-21T15:40:09,085 Fetched page https://www.piwheels.org/simple/bigphase/ as text/html 2024-07-21T15:40:09,088 Skipping link: No binaries permitted for bigphase: https://www.piwheels.org/simple/bigphase/BigphASE-0.1.1-cp311-cp311-linux_armv6l.whl#sha256=a2ccfb0a324109f26c210cb3a9c63f82446370a03b6d184e03d2c81d61f67aa9 (from https://www.piwheels.org/simple/bigphase/) 2024-07-21T15:40:09,089 Skipping link: No binaries permitted for bigphase: https://www.piwheels.org/simple/bigphase/BigphASE-0.1.1-cp311-cp311-linux_armv7l.whl#sha256=a2ccfb0a324109f26c210cb3a9c63f82446370a03b6d184e03d2c81d61f67aa9 (from https://www.piwheels.org/simple/bigphase/) 2024-07-21T15:40:09,089 Skipping link: No binaries permitted for bigphase: https://www.piwheels.org/simple/bigphase/BigphASE-0.1.1-cp39-cp39-linux_armv6l.whl#sha256=0f5eb54473285f864553f122b9b3fbe9b5a87a9201ff26602ad211d162e06e4d (from https://www.piwheels.org/simple/bigphase/) 2024-07-21T15:40:09,090 Skipping link: No binaries permitted for bigphase: https://www.piwheels.org/simple/bigphase/BigphASE-0.1.1-cp39-cp39-linux_armv7l.whl#sha256=0f5eb54473285f864553f122b9b3fbe9b5a87a9201ff26602ad211d162e06e4d (from https://www.piwheels.org/simple/bigphase/) 2024-07-21T15:40:09,091 Skipping link: No binaries permitted for bigphase: https://www.piwheels.org/simple/bigphase/BigphASE-0.1.0-cp39-cp39-linux_armv6l.whl#sha256=0e6881ebbedd3f710e7e7ba01d62a9a975ba63d051f6a468a9c0f3503cafd156 (from https://www.piwheels.org/simple/bigphase/) 2024-07-21T15:40:09,091 Skipping link: No binaries permitted for bigphase: https://www.piwheels.org/simple/bigphase/BigphASE-0.1.0-cp39-cp39-linux_armv7l.whl#sha256=0e6881ebbedd3f710e7e7ba01d62a9a975ba63d051f6a468a9c0f3503cafd156 (from https://www.piwheels.org/simple/bigphase/) 2024-07-21T15:40:09,092 Skipping link: not a file: https://www.piwheels.org/simple/bigphase/ 2024-07-21T15:40:09,092 Skipping link: not a file: https://pypi.org/simple/bigphase/ 2024-07-21T15:40:09,113 Given no hashes to check 1 links for project 'bigphase': discarding no candidates 2024-07-21T15:40:09,132 Collecting bigphase==0.1.2 2024-07-21T15:40:09,135 Created temporary directory: /tmp/pip-unpack-00pxb7uf 2024-07-21T15:40:09,346 Downloading bigphase-0.1.2.tar.gz (127 kB) 2024-07-21T15:40:09,490 Added bigphase==0.1.2 from https://files.pythonhosted.org/packages/2a/03/4c965f0d9e09ec76164ab6db236b98535a87595472baf194e218af849b9f/bigphase-0.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-aneb0x79' 2024-07-21T15:40:09,491 Running setup.py (path:/tmp/pip-wheel-19zzce3g/bigphase_4d8f854f565843febac1e2b6a3b089dd/setup.py) egg_info for package bigphase 2024-07-21T15:40:09,492 Created temporary directory: /tmp/pip-pip-egg-info-ehcij2cq 2024-07-21T15:40:09,493 Preparing metadata (setup.py): started 2024-07-21T15:40:09,494 Running command python setup.py egg_info 2024-07-21T15:40:10,558 running egg_info 2024-07-21T15:40:10,560 creating /tmp/pip-pip-egg-info-ehcij2cq/BigphASE.egg-info 2024-07-21T15:40:10,584 writing /tmp/pip-pip-egg-info-ehcij2cq/BigphASE.egg-info/PKG-INFO 2024-07-21T15:40:10,587 writing dependency_links to /tmp/pip-pip-egg-info-ehcij2cq/BigphASE.egg-info/dependency_links.txt 2024-07-21T15:40:10,589 writing top-level names to /tmp/pip-pip-egg-info-ehcij2cq/BigphASE.egg-info/top_level.txt 2024-07-21T15:40:10,590 writing manifest file '/tmp/pip-pip-egg-info-ehcij2cq/BigphASE.egg-info/SOURCES.txt' 2024-07-21T15:40:10,699 reading manifest file '/tmp/pip-pip-egg-info-ehcij2cq/BigphASE.egg-info/SOURCES.txt' 2024-07-21T15:40:10,701 reading manifest template 'MANIFEST.in' 2024-07-21T15:40:10,708 adding license file 'LICENSE' 2024-07-21T15:40:10,710 writing manifest file '/tmp/pip-pip-egg-info-ehcij2cq/BigphASE.egg-info/SOURCES.txt' 2024-07-21T15:40:10,826 Preparing metadata (setup.py): finished with status 'done' 2024-07-21T15:40:10,829 Source in /tmp/pip-wheel-19zzce3g/bigphase_4d8f854f565843febac1e2b6a3b089dd has version 0.1.2, which satisfies requirement bigphase==0.1.2 from https://files.pythonhosted.org/packages/2a/03/4c965f0d9e09ec76164ab6db236b98535a87595472baf194e218af849b9f/bigphase-0.1.2.tar.gz 2024-07-21T15:40:10,830 Removed bigphase==0.1.2 from https://files.pythonhosted.org/packages/2a/03/4c965f0d9e09ec76164ab6db236b98535a87595472baf194e218af849b9f/bigphase-0.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-aneb0x79' 2024-07-21T15:40:10,834 Created temporary directory: /tmp/pip-unpack-ruph71ll 2024-07-21T15:40:10,835 Created temporary directory: /tmp/pip-unpack-e5efr__5 2024-07-21T15:40:10,838 Building wheels for collected packages: bigphase 2024-07-21T15:40:10,842 Created temporary directory: /tmp/pip-wheel-6jk20thg 2024-07-21T15:40:10,843 Building wheel for bigphase (setup.py): started 2024-07-21T15:40:10,844 Destination directory: /tmp/pip-wheel-6jk20thg 2024-07-21T15:40:10,844 Running command python setup.py bdist_wheel 2024-07-21T15:40:11,902 running bdist_wheel 2024-07-21T15:40:11,976 running build 2024-07-21T15:40:11,976 running build_py 2024-07-21T15:40:12,004 creating build 2024-07-21T15:40:12,004 creating build/lib.linux-armv7l-cpython-311 2024-07-21T15:40:12,005 creating build/lib.linux-armv7l-cpython-311/BigphASE 2024-07-21T15:40:12,006 copying src/BigphASE/utils.py -> build/lib.linux-armv7l-cpython-311/BigphASE 2024-07-21T15:40:12,008 copying src/BigphASE/options.py -> build/lib.linux-armv7l-cpython-311/BigphASE 2024-07-21T15:40:12,010 copying src/BigphASE/__init__.py -> build/lib.linux-armv7l-cpython-311/BigphASE 2024-07-21T15:40:12,012 copying src/BigphASE/maker.py -> build/lib.linux-armv7l-cpython-311/BigphASE 2024-07-21T15:40:12,014 running egg_info 2024-07-21T15:40:12,074 writing src/BigphASE.egg-info/PKG-INFO 2024-07-21T15:40:12,077 writing dependency_links to src/BigphASE.egg-info/dependency_links.txt 2024-07-21T15:40:12,079 writing top-level names to src/BigphASE.egg-info/top_level.txt 2024-07-21T15:40:12,107 reading manifest file 'src/BigphASE.egg-info/SOURCES.txt' 2024-07-21T15:40:12,109 reading manifest template 'MANIFEST.in' 2024-07-21T15:40:12,116 adding license file 'LICENSE' 2024-07-21T15:40:12,118 writing manifest file 'src/BigphASE.egg-info/SOURCES.txt' 2024-07-21T15:40:12,121 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'BigphASE.delta2hap' is absent from the `packages` configuration. 2024-07-21T15:40:12,121 !! 2024-07-21T15:40:12,122 ******************************************************************************** 2024-07-21T15:40:12,122 ############################ 2024-07-21T15:40:12,123 # Package would be ignored # 2024-07-21T15:40:12,123 ############################ 2024-07-21T15:40:12,124 Python recognizes 'BigphASE.delta2hap' as an importable package[^1], 2024-07-21T15:40:12,124 but it is absent from setuptools' `packages` configuration. 2024-07-21T15:40:12,125 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-21T15:40:12,126 package, please make sure that 'BigphASE.delta2hap' is explicitly added 2024-07-21T15:40:12,126 to the `packages` configuration field. 2024-07-21T15:40:12,127 Alternatively, you can also rely on setuptools' discovery methods 2024-07-21T15:40:12,127 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-21T15:40:12,128 instead of `find_packages(...)`/`find:`). 2024-07-21T15:40:12,129 You can read more about "package discovery" on setuptools documentation page: 2024-07-21T15:40:12,130 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-21T15:40:12,132 If you don't want 'BigphASE.delta2hap' to be distributed and are 2024-07-21T15:40:12,133 already explicitly excluding 'BigphASE.delta2hap' via 2024-07-21T15:40:12,134 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-21T15:40:12,135 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-21T15:40:12,135 combination with a more fine grained `package-data` configuration. 2024-07-21T15:40:12,137 You can read more about "package data files" on setuptools documentation page: 2024-07-21T15:40:12,138 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-21T15:40:12,139 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-21T15:40:12,140 even if it does not contain any `.py` files. 2024-07-21T15:40:12,140 On the other hand, currently there is no concept of package data 2024-07-21T15:40:12,141 directory, all directories are treated like packages. 2024-07-21T15:40:12,141 ******************************************************************************** 2024-07-21T15:40:12,142 !! 2024-07-21T15:40:12,143 check.warn(importable) 2024-07-21T15:40:12,143 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'BigphASE.delta2hap.bin' is absent from the `packages` configuration. 2024-07-21T15:40:12,144 !! 2024-07-21T15:40:12,145 ******************************************************************************** 2024-07-21T15:40:12,145 ############################ 2024-07-21T15:40:12,146 # Package would be ignored # 2024-07-21T15:40:12,146 ############################ 2024-07-21T15:40:12,147 Python recognizes 'BigphASE.delta2hap.bin' as an importable package[^1], 2024-07-21T15:40:12,147 but it is absent from setuptools' `packages` configuration. 2024-07-21T15:40:12,148 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-21T15:40:12,149 package, please make sure that 'BigphASE.delta2hap.bin' is explicitly added 2024-07-21T15:40:12,149 to the `packages` configuration field. 2024-07-21T15:40:12,151 Alternatively, you can also rely on setuptools' discovery methods 2024-07-21T15:40:12,151 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-21T15:40:12,152 instead of `find_packages(...)`/`find:`). 2024-07-21T15:40:12,153 You can read more about "package discovery" on setuptools documentation page: 2024-07-21T15:40:12,154 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-21T15:40:12,155 If you don't want 'BigphASE.delta2hap.bin' to be distributed and are 2024-07-21T15:40:12,155 already explicitly excluding 'BigphASE.delta2hap.bin' via 2024-07-21T15:40:12,156 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-21T15:40:12,157 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-21T15:40:12,157 combination with a more fine grained `package-data` configuration. 2024-07-21T15:40:12,159 You can read more about "package data files" on setuptools documentation page: 2024-07-21T15:40:12,160 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-21T15:40:12,161 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-21T15:40:12,162 even if it does not contain any `.py` files. 2024-07-21T15:40:12,162 On the other hand, currently there is no concept of package data 2024-07-21T15:40:12,163 directory, all directories are treated like packages. 2024-07-21T15:40:12,163 ******************************************************************************** 2024-07-21T15:40:12,164 !! 2024-07-21T15:40:12,165 check.warn(importable) 2024-07-21T15:40:12,165 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'BigphASE.delta2hap.include' is absent from the `packages` configuration. 2024-07-21T15:40:12,166 !! 2024-07-21T15:40:12,167 ******************************************************************************** 2024-07-21T15:40:12,168 ############################ 2024-07-21T15:40:12,169 # Package would be ignored # 2024-07-21T15:40:12,169 ############################ 2024-07-21T15:40:12,170 Python recognizes 'BigphASE.delta2hap.include' as an importable package[^1], 2024-07-21T15:40:12,170 but it is absent from setuptools' `packages` configuration. 2024-07-21T15:40:12,172 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-21T15:40:12,173 package, please make sure that 'BigphASE.delta2hap.include' is explicitly added 2024-07-21T15:40:12,173 to the `packages` configuration field. 2024-07-21T15:40:12,174 Alternatively, you can also rely on setuptools' discovery methods 2024-07-21T15:40:12,175 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-21T15:40:12,176 instead of `find_packages(...)`/`find:`). 2024-07-21T15:40:12,177 You can read more about "package discovery" on setuptools documentation page: 2024-07-21T15:40:12,178 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-21T15:40:12,179 If you don't want 'BigphASE.delta2hap.include' to be distributed and are 2024-07-21T15:40:12,180 already explicitly excluding 'BigphASE.delta2hap.include' via 2024-07-21T15:40:12,181 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-21T15:40:12,181 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-21T15:40:12,182 combination with a more fine grained `package-data` configuration. 2024-07-21T15:40:12,183 You can read more about "package data files" on setuptools documentation page: 2024-07-21T15:40:12,184 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-21T15:40:12,186 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-21T15:40:12,186 even if it does not contain any `.py` files. 2024-07-21T15:40:12,187 On the other hand, currently there is no concept of package data 2024-07-21T15:40:12,187 directory, all directories are treated like packages. 2024-07-21T15:40:12,188 ******************************************************************************** 2024-07-21T15:40:12,188 !! 2024-07-21T15:40:12,189 check.warn(importable) 2024-07-21T15:40:12,189 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'BigphASE.delta2hap.src' is absent from the `packages` configuration. 2024-07-21T15:40:12,189 !! 2024-07-21T15:40:12,190 ******************************************************************************** 2024-07-21T15:40:12,191 ############################ 2024-07-21T15:40:12,191 # Package would be ignored # 2024-07-21T15:40:12,191 ############################ 2024-07-21T15:40:12,192 Python recognizes 'BigphASE.delta2hap.src' as an importable package[^1], 2024-07-21T15:40:12,192 but it is absent from setuptools' `packages` configuration. 2024-07-21T15:40:12,193 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-21T15:40:12,193 package, please make sure that 'BigphASE.delta2hap.src' is explicitly added 2024-07-21T15:40:12,194 to the `packages` configuration field. 2024-07-21T15:40:12,195 Alternatively, you can also rely on setuptools' discovery methods 2024-07-21T15:40:12,195 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-21T15:40:12,196 instead of `find_packages(...)`/`find:`). 2024-07-21T15:40:12,197 You can read more about "package discovery" on setuptools documentation page: 2024-07-21T15:40:12,198 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-21T15:40:12,199 If you don't want 'BigphASE.delta2hap.src' to be distributed and are 2024-07-21T15:40:12,200 already explicitly excluding 'BigphASE.delta2hap.src' via 2024-07-21T15:40:12,200 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-21T15:40:12,201 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-21T15:40:12,201 combination with a more fine grained `package-data` configuration. 2024-07-21T15:40:12,203 You can read more about "package data files" on setuptools documentation page: 2024-07-21T15:40:12,204 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-21T15:40:12,206 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-21T15:40:12,207 even if it does not contain any `.py` files. 2024-07-21T15:40:12,207 On the other hand, currently there is no concept of package data 2024-07-21T15:40:12,208 directory, all directories are treated like packages. 2024-07-21T15:40:12,208 ******************************************************************************** 2024-07-21T15:40:12,209 !! 2024-07-21T15:40:12,209 check.warn(importable) 2024-07-21T15:40:12,210 creating build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap 2024-07-21T15:40:12,210 copying src/BigphASE/delta2hap/CMakeLists.txt -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap 2024-07-21T15:40:12,211 creating build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/bin 2024-07-21T15:40:12,211 copying src/BigphASE/delta2hap/bin/delta2hap -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/bin 2024-07-21T15:40:12,212 creating build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include 2024-07-21T15:40:12,212 copying src/BigphASE/delta2hap/include/delta.h -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include 2024-07-21T15:40:12,213 copying src/BigphASE/delta2hap/include/redirect_to_pager.h -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include 2024-07-21T15:40:12,213 copying src/BigphASE/delta2hap/include/show-vcf.h -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include 2024-07-21T15:40:12,214 copying src/BigphASE/delta2hap/include/sw_alignscore.h -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include 2024-07-21T15:40:12,214 copying src/BigphASE/delta2hap/include/tigrinc.h -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include 2024-07-21T15:40:12,215 copying src/BigphASE/delta2hap/include/translate.h -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include 2024-07-21T15:40:12,215 creating build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src 2024-07-21T15:40:12,215 copying src/BigphASE/delta2hap/src/delta.cpp -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src 2024-07-21T15:40:12,216 copying src/BigphASE/delta2hap/src/delta2hap.cpp -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src 2024-07-21T15:40:12,216 copying src/BigphASE/delta2hap/src/tigrinc.cpp -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src 2024-07-21T15:40:12,217 copying src/BigphASE/delta2hap/src/translate.cpp -> build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src 2024-07-21T15:40:12,217 running build_ext 2024-07-21T15:40:12,217 Compiling src/BigphASE/delta2hap/src/delta2hap.cpp... 2024-07-21T15:40:15,788 Compiling src/BigphASE/delta2hap/src/delta.cpp... 2024-07-21T15:40:19,519 Compiling src/BigphASE/delta2hap/src/tigrinc.cpp... 2024-07-21T15:40:19,892 Compiling src/BigphASE/delta2hap/src/translate.cpp... 2024-07-21T15:40:20,034 Linking src/BigphASE/delta2hap/bin/delta2hap... 2024-07-21T15:40:20,412 running build_scripts 2024-07-21T15:40:20,412 creating build/scripts-3.11 2024-07-21T15:40:20,413 copying and adjusting scripts/BigphASEtools -> build/scripts-3.11 2024-07-21T15:40:20,415 changing mode of build/scripts-3.11/BigphASEtools from 644 to 755 2024-07-21T15:40:20,416 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-07-21T15:40:20,417 !! 2024-07-21T15:40:20,418 ******************************************************************************** 2024-07-21T15:40:20,419 Please avoid running ``setup.py`` directly. 2024-07-21T15:40:20,419 Instead, use pypa/build, pypa/installer or other 2024-07-21T15:40:20,420 standards-based tools. 2024-07-21T15:40:20,421 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-07-21T15:40:20,421 ******************************************************************************** 2024-07-21T15:40:20,423 !! 2024-07-21T15:40:20,423 self.initialize_options() 2024-07-21T15:40:20,442 installing to build/bdist.linux-armv7l/wheel 2024-07-21T15:40:20,442 running install 2024-07-21T15:40:20,467 running install_lib 2024-07-21T15:40:20,491 creating build/bdist.linux-armv7l 2024-07-21T15:40:20,492 creating build/bdist.linux-armv7l/wheel 2024-07-21T15:40:20,493 creating build/bdist.linux-armv7l/wheel/BigphASE 2024-07-21T15:40:20,494 copying build/lib.linux-armv7l-cpython-311/BigphASE/utils.py -> build/bdist.linux-armv7l/wheel/BigphASE 2024-07-21T15:40:20,498 creating build/bdist.linux-armv7l/wheel/BigphASE/delta2hap 2024-07-21T15:40:20,499 creating build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src 2024-07-21T15:40:20,500 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src/delta.cpp -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src 2024-07-21T15:40:20,503 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src/translate.cpp -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src 2024-07-21T15:40:20,505 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src/delta2hap.cpp -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src 2024-07-21T15:40:20,508 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/src/tigrinc.cpp -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src 2024-07-21T15:40:20,510 creating build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-21T15:40:20,511 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include/redirect_to_pager.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-21T15:40:20,513 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include/delta.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-21T15:40:20,515 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include/show-vcf.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-21T15:40:20,517 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include/sw_alignscore.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-21T15:40:20,520 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include/translate.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-21T15:40:20,522 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/include/tigrinc.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include 2024-07-21T15:40:20,524 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/CMakeLists.txt -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap 2024-07-21T15:40:20,526 creating build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/bin 2024-07-21T15:40:20,526 copying build/lib.linux-armv7l-cpython-311/BigphASE/delta2hap/bin/delta2hap -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/bin 2024-07-21T15:40:20,533 copying build/lib.linux-armv7l-cpython-311/BigphASE/options.py -> build/bdist.linux-armv7l/wheel/BigphASE 2024-07-21T15:40:20,535 copying build/lib.linux-armv7l-cpython-311/BigphASE/__init__.py -> build/bdist.linux-armv7l/wheel/BigphASE 2024-07-21T15:40:20,537 copying build/lib.linux-armv7l-cpython-311/BigphASE/maker.py -> build/bdist.linux-armv7l/wheel/BigphASE 2024-07-21T15:40:20,539 running install_egg_info 2024-07-21T15:40:20,569 Copying src/BigphASE.egg-info to build/bdist.linux-armv7l/wheel/BigphASE-0.1.2-py3.11.egg-info 2024-07-21T15:40:20,577 running install_scripts 2024-07-21T15:40:20,578 creating build/bdist.linux-armv7l/wheel/BigphASE-0.1.2.data 2024-07-21T15:40:20,578 creating build/bdist.linux-armv7l/wheel/BigphASE-0.1.2.data/scripts 2024-07-21T15:40:20,579 copying build/scripts-3.11/BigphASEtools -> build/bdist.linux-armv7l/wheel/BigphASE-0.1.2.data/scripts 2024-07-21T15:40:20,581 changing mode of build/bdist.linux-armv7l/wheel/BigphASE-0.1.2.data/scripts/BigphASEtools to 755 2024-07-21T15:40:20,583 Removed directory /tmp/pip-wheel-19zzce3g/bigphase_4d8f854f565843febac1e2b6a3b089dd/src/BigphASE/delta2hap/include 2024-07-21T15:40:20,586 Removed directory /tmp/pip-wheel-19zzce3g/bigphase_4d8f854f565843febac1e2b6a3b089dd/src/BigphASE/delta2hap/src 2024-07-21T15:40:20,587 Removed file /tmp/pip-wheel-19zzce3g/bigphase_4d8f854f565843febac1e2b6a3b089dd/src/BigphASE/delta2hap/CMakeLists.txt 2024-07-21T15:40:20,637 creating build/bdist.linux-armv7l/wheel/BigphASE-0.1.2.dist-info/WHEEL 2024-07-21T15:40:20,640 creating '/tmp/pip-wheel-6jk20thg/BigphASE-0.1.2-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-21T15:40:20,642 adding 'BigphASE/__init__.py' 2024-07-21T15:40:20,644 adding 'BigphASE/maker.py' 2024-07-21T15:40:20,646 adding 'BigphASE/options.py' 2024-07-21T15:40:20,647 adding 'BigphASE/utils.py' 2024-07-21T15:40:20,649 adding 'BigphASE/delta2hap/CMakeLists.txt' 2024-07-21T15:40:20,693 adding 'BigphASE/delta2hap/bin/delta2hap' 2024-07-21T15:40:20,698 adding 'BigphASE/delta2hap/include/delta.h' 2024-07-21T15:40:20,700 adding 'BigphASE/delta2hap/include/redirect_to_pager.h' 2024-07-21T15:40:20,701 adding 'BigphASE/delta2hap/include/show-vcf.h' 2024-07-21T15:40:20,703 adding 'BigphASE/delta2hap/include/sw_alignscore.h' 2024-07-21T15:40:20,704 adding 'BigphASE/delta2hap/include/tigrinc.h' 2024-07-21T15:40:20,706 adding 'BigphASE/delta2hap/include/translate.h' 2024-07-21T15:40:20,710 adding 'BigphASE/delta2hap/src/delta.cpp' 2024-07-21T15:40:20,714 adding 'BigphASE/delta2hap/src/delta2hap.cpp' 2024-07-21T15:40:20,715 adding 'BigphASE/delta2hap/src/tigrinc.cpp' 2024-07-21T15:40:20,717 adding 'BigphASE/delta2hap/src/translate.cpp' 2024-07-21T15:40:20,719 adding 'BigphASE-0.1.2.data/scripts/BigphASEtools' 2024-07-21T15:40:20,726 adding 'BigphASE-0.1.2.dist-info/LICENSE' 2024-07-21T15:40:20,727 adding 'BigphASE-0.1.2.dist-info/METADATA' 2024-07-21T15:40:20,728 adding 'BigphASE-0.1.2.dist-info/WHEEL' 2024-07-21T15:40:20,729 adding 'BigphASE-0.1.2.dist-info/top_level.txt' 2024-07-21T15:40:20,730 adding 'BigphASE-0.1.2.dist-info/RECORD' 2024-07-21T15:40:20,732 removing build/bdist.linux-armv7l/wheel 2024-07-21T15:40:20,858 Building wheel for bigphase (setup.py): finished with status 'done' 2024-07-21T15:40:20,862 Created wheel for bigphase: filename=BigphASE-0.1.2-cp311-cp311-linux_armv7l.whl size=129889 sha256=69a303b5c201d99a6cca711d71a2560d9d81151dc0130dfb2ad6e67a328aa176 2024-07-21T15:40:20,863 Stored in directory: /tmp/pip-ephem-wheel-cache-v9wxiojx/wheels/54/9d/64/2f8d160321cbc76a8704e97d4233f4251223416592b4353e9f 2024-07-21T15:40:20,874 Successfully built bigphase 2024-07-21T15:40:20,880 Removed build tracker: '/tmp/pip-build-tracker-aneb0x79'