2024-07-21T16:36:39,047 Created temporary directory: /tmp/pip-build-tracker-4mrig47c
2024-07-21T16:36:39,049 Initialized build tracking at /tmp/pip-build-tracker-4mrig47c
2024-07-21T16:36:39,049 Created build tracker: /tmp/pip-build-tracker-4mrig47c
2024-07-21T16:36:39,049 Entered build tracker: /tmp/pip-build-tracker-4mrig47c
2024-07-21T16:36:39,050 Created temporary directory: /tmp/pip-wheel-b3a2th8q
2024-07-21T16:36:39,054 Created temporary directory: /tmp/pip-ephem-wheel-cache-7f3rhqj0
2024-07-21T16:36:39,078 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-21T16:36:39,081 2 location(s) to search for versions of bigphase:
2024-07-21T16:36:39,081 * https://pypi.org/simple/bigphase/
2024-07-21T16:36:39,081 * https://www.piwheels.org/simple/bigphase/
2024-07-21T16:36:39,082 Fetching project page and analyzing links: https://pypi.org/simple/bigphase/
2024-07-21T16:36:39,083 Getting page https://pypi.org/simple/bigphase/
2024-07-21T16:36:39,084 Found index url https://pypi.org/simple/
2024-07-21T16:36:39,136 Fetched page https://pypi.org/simple/bigphase/ as application/vnd.pypi.simple.v1+json
2024-07-21T16:36:39,137   Found link https://files.pythonhosted.org/packages/a0/71/7839c0a22ba5cd0ac7768ac47b4cec82865f1fb0ef43b548cb79be88328b/bigphase-0.1.0.tar.gz (from https://pypi.org/simple/bigphase/), version: 0.1.0
2024-07-21T16:36:39,138   Found link https://files.pythonhosted.org/packages/50/8b/c53eaeb389ff9b6aa6eab1f861d875fd056f89443e6a029a0d6f2419d46c/bigphase-0.1.1.tar.gz (from https://pypi.org/simple/bigphase/), version: 0.1.1
2024-07-21T16:36:39,138   Found link https://files.pythonhosted.org/packages/2a/03/4c965f0d9e09ec76164ab6db236b98535a87595472baf194e218af849b9f/bigphase-0.1.2.tar.gz (from https://pypi.org/simple/bigphase/), version: 0.1.2
2024-07-21T16:36:39,138 Fetching project page and analyzing links: https://www.piwheels.org/simple/bigphase/
2024-07-21T16:36:39,139 Getting page https://www.piwheels.org/simple/bigphase/
2024-07-21T16:36:39,140 Found index url https://www.piwheels.org/simple/
2024-07-21T16:36:39,221 Fetched page https://www.piwheels.org/simple/bigphase/ as text/html
2024-07-21T16:36:39,224   Skipping link: No binaries permitted for bigphase: https://www.piwheels.org/simple/bigphase/BigphASE-0.1.2-cp311-cp311-linux_armv6l.whl#sha256=69a303b5c201d99a6cca711d71a2560d9d81151dc0130dfb2ad6e67a328aa176 (from https://www.piwheels.org/simple/bigphase/)
2024-07-21T16:36:39,224   Skipping link: No binaries permitted for bigphase: https://www.piwheels.org/simple/bigphase/BigphASE-0.1.2-cp311-cp311-linux_armv7l.whl#sha256=69a303b5c201d99a6cca711d71a2560d9d81151dc0130dfb2ad6e67a328aa176 (from https://www.piwheels.org/simple/bigphase/)
2024-07-21T16:36:39,225   Skipping link: No binaries permitted for bigphase: https://www.piwheels.org/simple/bigphase/BigphASE-0.1.1-cp311-cp311-linux_armv6l.whl#sha256=a2ccfb0a324109f26c210cb3a9c63f82446370a03b6d184e03d2c81d61f67aa9 (from https://www.piwheels.org/simple/bigphase/)
2024-07-21T16:36:39,225   Skipping link: No binaries permitted for bigphase: https://www.piwheels.org/simple/bigphase/BigphASE-0.1.1-cp311-cp311-linux_armv7l.whl#sha256=a2ccfb0a324109f26c210cb3a9c63f82446370a03b6d184e03d2c81d61f67aa9 (from https://www.piwheels.org/simple/bigphase/)
2024-07-21T16:36:39,225   Skipping link: No binaries permitted for bigphase: https://www.piwheels.org/simple/bigphase/BigphASE-0.1.1-cp39-cp39-linux_armv6l.whl#sha256=0f5eb54473285f864553f122b9b3fbe9b5a87a9201ff26602ad211d162e06e4d (from https://www.piwheels.org/simple/bigphase/)
2024-07-21T16:36:39,225   Skipping link: No binaries permitted for bigphase: https://www.piwheels.org/simple/bigphase/BigphASE-0.1.1-cp39-cp39-linux_armv7l.whl#sha256=0f5eb54473285f864553f122b9b3fbe9b5a87a9201ff26602ad211d162e06e4d (from https://www.piwheels.org/simple/bigphase/)
2024-07-21T16:36:39,225   Skipping link: No binaries permitted for bigphase: https://www.piwheels.org/simple/bigphase/BigphASE-0.1.0-cp39-cp39-linux_armv6l.whl#sha256=0e6881ebbedd3f710e7e7ba01d62a9a975ba63d051f6a468a9c0f3503cafd156 (from https://www.piwheels.org/simple/bigphase/)
2024-07-21T16:36:39,225   Skipping link: No binaries permitted for bigphase: https://www.piwheels.org/simple/bigphase/BigphASE-0.1.0-cp39-cp39-linux_armv7l.whl#sha256=0e6881ebbedd3f710e7e7ba01d62a9a975ba63d051f6a468a9c0f3503cafd156 (from https://www.piwheels.org/simple/bigphase/)
2024-07-21T16:36:39,226 Skipping link: not a file: https://www.piwheels.org/simple/bigphase/
2024-07-21T16:36:39,226 Skipping link: not a file: https://pypi.org/simple/bigphase/
2024-07-21T16:36:39,243 Given no hashes to check 1 links for project 'bigphase': discarding no candidates
2024-07-21T16:36:39,260 Collecting bigphase==0.1.2
2024-07-21T16:36:39,262   Created temporary directory: /tmp/pip-unpack-zziflzvb
2024-07-21T16:36:39,306   Downloading bigphase-0.1.2.tar.gz (127 kB)
2024-07-21T16:36:39,418   Added bigphase==0.1.2 from https://files.pythonhosted.org/packages/2a/03/4c965f0d9e09ec76164ab6db236b98535a87595472baf194e218af849b9f/bigphase-0.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-4mrig47c'
2024-07-21T16:36:39,420   Running setup.py (path:/tmp/pip-wheel-b3a2th8q/bigphase_6a0f222e25d34a81a148817acb3392ee/setup.py) egg_info for package bigphase
2024-07-21T16:36:39,421   Created temporary directory: /tmp/pip-pip-egg-info-f1ptd1zw
2024-07-21T16:36:39,421   Preparing metadata (setup.py): started
2024-07-21T16:36:39,422   Running command python setup.py egg_info
2024-07-21T16:36:40,523   running egg_info
2024-07-21T16:36:40,528   creating /tmp/pip-pip-egg-info-f1ptd1zw/BigphASE.egg-info
2024-07-21T16:36:40,552   writing /tmp/pip-pip-egg-info-f1ptd1zw/BigphASE.egg-info/PKG-INFO
2024-07-21T16:36:40,555   writing dependency_links to /tmp/pip-pip-egg-info-f1ptd1zw/BigphASE.egg-info/dependency_links.txt
2024-07-21T16:36:40,557   writing top-level names to /tmp/pip-pip-egg-info-f1ptd1zw/BigphASE.egg-info/top_level.txt
2024-07-21T16:36:40,559   writing manifest file '/tmp/pip-pip-egg-info-f1ptd1zw/BigphASE.egg-info/SOURCES.txt'
2024-07-21T16:36:40,665   reading manifest file '/tmp/pip-pip-egg-info-f1ptd1zw/BigphASE.egg-info/SOURCES.txt'
2024-07-21T16:36:40,666   reading manifest template 'MANIFEST.in'
2024-07-21T16:36:40,674   adding license file 'LICENSE'
2024-07-21T16:36:40,676   writing manifest file '/tmp/pip-pip-egg-info-f1ptd1zw/BigphASE.egg-info/SOURCES.txt'
2024-07-21T16:36:40,771   Preparing metadata (setup.py): finished with status 'done'
2024-07-21T16:36:40,776   Source in /tmp/pip-wheel-b3a2th8q/bigphase_6a0f222e25d34a81a148817acb3392ee has version 0.1.2, which satisfies requirement bigphase==0.1.2 from https://files.pythonhosted.org/packages/2a/03/4c965f0d9e09ec76164ab6db236b98535a87595472baf194e218af849b9f/bigphase-0.1.2.tar.gz
2024-07-21T16:36:40,777   Removed bigphase==0.1.2 from https://files.pythonhosted.org/packages/2a/03/4c965f0d9e09ec76164ab6db236b98535a87595472baf194e218af849b9f/bigphase-0.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-4mrig47c'
2024-07-21T16:36:40,781 Created temporary directory: /tmp/pip-unpack-r5v0gzzt
2024-07-21T16:36:40,782 Created temporary directory: /tmp/pip-unpack-irjgdjix
2024-07-21T16:36:40,783 Building wheels for collected packages: bigphase
2024-07-21T16:36:40,787   Created temporary directory: /tmp/pip-wheel-h0asza98
2024-07-21T16:36:40,788   Building wheel for bigphase (setup.py): started
2024-07-21T16:36:40,789   Destination directory: /tmp/pip-wheel-h0asza98
2024-07-21T16:36:40,789   Running command python setup.py bdist_wheel
2024-07-21T16:36:41,886   running bdist_wheel
2024-07-21T16:36:41,957   running build
2024-07-21T16:36:41,958   running build_py
2024-07-21T16:36:41,984   creating build
2024-07-21T16:36:41,985   creating build/lib.linux-armv7l-cpython-39
2024-07-21T16:36:41,985   creating build/lib.linux-armv7l-cpython-39/BigphASE
2024-07-21T16:36:41,987   copying src/BigphASE/__init__.py -> build/lib.linux-armv7l-cpython-39/BigphASE
2024-07-21T16:36:41,989   copying src/BigphASE/options.py -> build/lib.linux-armv7l-cpython-39/BigphASE
2024-07-21T16:36:41,991   copying src/BigphASE/utils.py -> build/lib.linux-armv7l-cpython-39/BigphASE
2024-07-21T16:36:41,993   copying src/BigphASE/maker.py -> build/lib.linux-armv7l-cpython-39/BigphASE
2024-07-21T16:36:41,995   running egg_info
2024-07-21T16:36:42,053   writing src/BigphASE.egg-info/PKG-INFO
2024-07-21T16:36:42,056   writing dependency_links to src/BigphASE.egg-info/dependency_links.txt
2024-07-21T16:36:42,059   writing top-level names to src/BigphASE.egg-info/top_level.txt
2024-07-21T16:36:42,087   reading manifest file 'src/BigphASE.egg-info/SOURCES.txt'
2024-07-21T16:36:42,089   reading manifest template 'MANIFEST.in'
2024-07-21T16:36:42,096   adding license file 'LICENSE'
2024-07-21T16:36:42,099   writing manifest file 'src/BigphASE.egg-info/SOURCES.txt'
2024-07-21T16:36:42,101   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'BigphASE.delta2hap' is absent from the `packages` configuration.
2024-07-21T16:36:42,101   !!

2024-07-21T16:36:42,102           ********************************************************************************
2024-07-21T16:36:42,102           ############################
2024-07-21T16:36:42,102           # Package would be ignored #
2024-07-21T16:36:42,102           ############################
2024-07-21T16:36:42,102           Python recognizes 'BigphASE.delta2hap' as an importable package[^1],
2024-07-21T16:36:42,102           but it is absent from setuptools' `packages` configuration.

2024-07-21T16:36:42,103           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-21T16:36:42,103           package, please make sure that 'BigphASE.delta2hap' is explicitly added
2024-07-21T16:36:42,103           to the `packages` configuration field.

2024-07-21T16:36:42,103           Alternatively, you can also rely on setuptools' discovery methods
2024-07-21T16:36:42,103           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-21T16:36:42,103           instead of `find_packages(...)`/`find:`).

2024-07-21T16:36:42,104           You can read more about "package discovery" on setuptools documentation page:

2024-07-21T16:36:42,104           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-21T16:36:42,104           If you don't want 'BigphASE.delta2hap' to be distributed and are
2024-07-21T16:36:42,104           already explicitly excluding 'BigphASE.delta2hap' via
2024-07-21T16:36:42,104           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-21T16:36:42,104           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-21T16:36:42,104           combination with a more fine grained `package-data` configuration.

2024-07-21T16:36:42,105           You can read more about "package data files" on setuptools documentation page:

2024-07-21T16:36:42,105           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-21T16:36:42,105           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-21T16:36:42,105                 even if it does not contain any `.py` files.
2024-07-21T16:36:42,106                 On the other hand, currently there is no concept of package data
2024-07-21T16:36:42,106                 directory, all directories are treated like packages.
2024-07-21T16:36:42,106           ********************************************************************************

2024-07-21T16:36:42,106   !!
2024-07-21T16:36:42,106     check.warn(importable)
2024-07-21T16:36:42,106   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'BigphASE.delta2hap.bin' is absent from the `packages` configuration.
2024-07-21T16:36:42,107   !!

2024-07-21T16:36:42,107           ********************************************************************************
2024-07-21T16:36:42,107           ############################
2024-07-21T16:36:42,107           # Package would be ignored #
2024-07-21T16:36:42,107           ############################
2024-07-21T16:36:42,107           Python recognizes 'BigphASE.delta2hap.bin' as an importable package[^1],
2024-07-21T16:36:42,108           but it is absent from setuptools' `packages` configuration.

2024-07-21T16:36:42,108           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-21T16:36:42,108           package, please make sure that 'BigphASE.delta2hap.bin' is explicitly added
2024-07-21T16:36:42,108           to the `packages` configuration field.

2024-07-21T16:36:42,108           Alternatively, you can also rely on setuptools' discovery methods
2024-07-21T16:36:42,109           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-21T16:36:42,109           instead of `find_packages(...)`/`find:`).

2024-07-21T16:36:42,109           You can read more about "package discovery" on setuptools documentation page:

2024-07-21T16:36:42,109           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-21T16:36:42,109           If you don't want 'BigphASE.delta2hap.bin' to be distributed and are
2024-07-21T16:36:42,110           already explicitly excluding 'BigphASE.delta2hap.bin' via
2024-07-21T16:36:42,110           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-21T16:36:42,110           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-21T16:36:42,110           combination with a more fine grained `package-data` configuration.

2024-07-21T16:36:42,110           You can read more about "package data files" on setuptools documentation page:

2024-07-21T16:36:42,110           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-21T16:36:42,111           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-21T16:36:42,111                 even if it does not contain any `.py` files.
2024-07-21T16:36:42,111                 On the other hand, currently there is no concept of package data
2024-07-21T16:36:42,111                 directory, all directories are treated like packages.
2024-07-21T16:36:42,111           ********************************************************************************

2024-07-21T16:36:42,112   !!
2024-07-21T16:36:42,112     check.warn(importable)
2024-07-21T16:36:42,112   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'BigphASE.delta2hap.include' is absent from the `packages` configuration.
2024-07-21T16:36:42,112   !!

2024-07-21T16:36:42,112           ********************************************************************************
2024-07-21T16:36:42,113           ############################
2024-07-21T16:36:42,114           # Package would be ignored #
2024-07-21T16:36:42,114           ############################
2024-07-21T16:36:42,114           Python recognizes 'BigphASE.delta2hap.include' as an importable package[^1],
2024-07-21T16:36:42,115           but it is absent from setuptools' `packages` configuration.

2024-07-21T16:36:42,115           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-21T16:36:42,115           package, please make sure that 'BigphASE.delta2hap.include' is explicitly added
2024-07-21T16:36:42,116           to the `packages` configuration field.

2024-07-21T16:36:42,116           Alternatively, you can also rely on setuptools' discovery methods
2024-07-21T16:36:42,116           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-21T16:36:42,116           instead of `find_packages(...)`/`find:`).

2024-07-21T16:36:42,116           You can read more about "package discovery" on setuptools documentation page:

2024-07-21T16:36:42,117           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-21T16:36:42,117           If you don't want 'BigphASE.delta2hap.include' to be distributed and are
2024-07-21T16:36:42,117           already explicitly excluding 'BigphASE.delta2hap.include' via
2024-07-21T16:36:42,117           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-21T16:36:42,117           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-21T16:36:42,118           combination with a more fine grained `package-data` configuration.

2024-07-21T16:36:42,118           You can read more about "package data files" on setuptools documentation page:

2024-07-21T16:36:42,118           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-21T16:36:42,118           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-21T16:36:42,119                 even if it does not contain any `.py` files.
2024-07-21T16:36:42,119                 On the other hand, currently there is no concept of package data
2024-07-21T16:36:42,119                 directory, all directories are treated like packages.
2024-07-21T16:36:42,119           ********************************************************************************

2024-07-21T16:36:42,119   !!
2024-07-21T16:36:42,119     check.warn(importable)
2024-07-21T16:36:42,119   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'BigphASE.delta2hap.src' is absent from the `packages` configuration.
2024-07-21T16:36:42,120   !!

2024-07-21T16:36:42,120           ********************************************************************************
2024-07-21T16:36:42,120           ############################
2024-07-21T16:36:42,120           # Package would be ignored #
2024-07-21T16:36:42,120           ############################
2024-07-21T16:36:42,120           Python recognizes 'BigphASE.delta2hap.src' as an importable package[^1],
2024-07-21T16:36:42,121           but it is absent from setuptools' `packages` configuration.

2024-07-21T16:36:42,121           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-21T16:36:42,121           package, please make sure that 'BigphASE.delta2hap.src' is explicitly added
2024-07-21T16:36:42,121           to the `packages` configuration field.

2024-07-21T16:36:42,121           Alternatively, you can also rely on setuptools' discovery methods
2024-07-21T16:36:42,121           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-21T16:36:42,122           instead of `find_packages(...)`/`find:`).

2024-07-21T16:36:42,122           You can read more about "package discovery" on setuptools documentation page:

2024-07-21T16:36:42,122           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-21T16:36:42,122           If you don't want 'BigphASE.delta2hap.src' to be distributed and are
2024-07-21T16:36:42,122           already explicitly excluding 'BigphASE.delta2hap.src' via
2024-07-21T16:36:42,123           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-21T16:36:42,123           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-21T16:36:42,123           combination with a more fine grained `package-data` configuration.

2024-07-21T16:36:42,123           You can read more about "package data files" on setuptools documentation page:

2024-07-21T16:36:42,123           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-21T16:36:42,124           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-21T16:36:42,124                 even if it does not contain any `.py` files.
2024-07-21T16:36:42,124                 On the other hand, currently there is no concept of package data
2024-07-21T16:36:42,124                 directory, all directories are treated like packages.
2024-07-21T16:36:42,124           ********************************************************************************

2024-07-21T16:36:42,125   !!
2024-07-21T16:36:42,125     check.warn(importable)
2024-07-21T16:36:42,125   creating build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap
2024-07-21T16:36:42,125   copying src/BigphASE/delta2hap/CMakeLists.txt -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap
2024-07-21T16:36:42,125   creating build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/bin
2024-07-21T16:36:42,125   copying src/BigphASE/delta2hap/bin/delta2hap -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/bin
2024-07-21T16:36:42,125   creating build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include
2024-07-21T16:36:42,126   copying src/BigphASE/delta2hap/include/delta.h -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include
2024-07-21T16:36:42,126   copying src/BigphASE/delta2hap/include/redirect_to_pager.h -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include
2024-07-21T16:36:42,126   copying src/BigphASE/delta2hap/include/show-vcf.h -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include
2024-07-21T16:36:42,126   copying src/BigphASE/delta2hap/include/sw_alignscore.h -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include
2024-07-21T16:36:42,129   copying src/BigphASE/delta2hap/include/tigrinc.h -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include
2024-07-21T16:36:42,131   copying src/BigphASE/delta2hap/include/translate.h -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include
2024-07-21T16:36:42,134   creating build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src
2024-07-21T16:36:42,135   copying src/BigphASE/delta2hap/src/delta.cpp -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src
2024-07-21T16:36:42,138   copying src/BigphASE/delta2hap/src/delta2hap.cpp -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src
2024-07-21T16:36:42,141   copying src/BigphASE/delta2hap/src/tigrinc.cpp -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src
2024-07-21T16:36:42,144   copying src/BigphASE/delta2hap/src/translate.cpp -> build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src
2024-07-21T16:36:42,146   running build_ext
2024-07-21T16:36:42,159   Compiling src/BigphASE/delta2hap/src/delta2hap.cpp...
2024-07-21T16:36:45,326   Compiling src/BigphASE/delta2hap/src/delta.cpp...
2024-07-21T16:36:48,517   Compiling src/BigphASE/delta2hap/src/tigrinc.cpp...
2024-07-21T16:36:48,820   Compiling src/BigphASE/delta2hap/src/translate.cpp...
2024-07-21T16:36:48,951   Linking src/BigphASE/delta2hap/bin/delta2hap...
2024-07-21T16:36:49,457   running build_scripts
2024-07-21T16:36:49,457   creating build/scripts-3.9
2024-07-21T16:36:49,459   copying and adjusting scripts/BigphASEtools -> build/scripts-3.9
2024-07-21T16:36:49,461   changing mode of build/scripts-3.9/BigphASEtools from 644 to 755
2024-07-21T16:36:49,462   /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-07-21T16:36:49,462   !!

2024-07-21T16:36:49,463           ********************************************************************************
2024-07-21T16:36:49,463           Please avoid running ``setup.py`` directly.
2024-07-21T16:36:49,463           Instead, use pypa/build, pypa/installer or other
2024-07-21T16:36:49,463           standards-based tools.

2024-07-21T16:36:49,463           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-07-21T16:36:49,464           ********************************************************************************

2024-07-21T16:36:49,464   !!
2024-07-21T16:36:49,464     self.initialize_options()
2024-07-21T16:36:49,486   installing to build/bdist.linux-armv7l/wheel
2024-07-21T16:36:49,486   running install
2024-07-21T16:36:49,513   running install_lib
2024-07-21T16:36:49,537   creating build/bdist.linux-armv7l
2024-07-21T16:36:49,538   creating build/bdist.linux-armv7l/wheel
2024-07-21T16:36:49,539   creating build/bdist.linux-armv7l/wheel/BigphASE
2024-07-21T16:36:49,540   copying build/lib.linux-armv7l-cpython-39/BigphASE/__init__.py -> build/bdist.linux-armv7l/wheel/BigphASE
2024-07-21T16:36:49,542   copying build/lib.linux-armv7l-cpython-39/BigphASE/options.py -> build/bdist.linux-armv7l/wheel/BigphASE
2024-07-21T16:36:49,545   copying build/lib.linux-armv7l-cpython-39/BigphASE/utils.py -> build/bdist.linux-armv7l/wheel/BigphASE
2024-07-21T16:36:49,547   copying build/lib.linux-armv7l-cpython-39/BigphASE/maker.py -> build/bdist.linux-armv7l/wheel/BigphASE
2024-07-21T16:36:49,550   creating build/bdist.linux-armv7l/wheel/BigphASE/delta2hap
2024-07-21T16:36:49,551   copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/CMakeLists.txt -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap
2024-07-21T16:36:49,553   creating build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include
2024-07-21T16:36:49,554   copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include/tigrinc.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include
2024-07-21T16:36:49,556   copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include/sw_alignscore.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include
2024-07-21T16:36:49,559   copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include/redirect_to_pager.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include
2024-07-21T16:36:49,560   copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include/translate.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include
2024-07-21T16:36:49,563   copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include/delta.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include
2024-07-21T16:36:49,566   copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/include/show-vcf.h -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/include
2024-07-21T16:36:49,568   creating build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/bin
2024-07-21T16:36:49,569   copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/bin/delta2hap -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/bin
2024-07-21T16:36:49,577   creating build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src
2024-07-21T16:36:49,578   copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src/translate.cpp -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src
2024-07-21T16:36:49,580   copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src/delta.cpp -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src
2024-07-21T16:36:49,583   copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src/delta2hap.cpp -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src
2024-07-21T16:36:49,586   copying build/lib.linux-armv7l-cpython-39/BigphASE/delta2hap/src/tigrinc.cpp -> build/bdist.linux-armv7l/wheel/BigphASE/delta2hap/src
2024-07-21T16:36:49,588   running install_egg_info
2024-07-21T16:36:49,617   Copying src/BigphASE.egg-info to build/bdist.linux-armv7l/wheel/BigphASE-0.1.2-py3.9.egg-info
2024-07-21T16:36:49,626   running install_scripts
2024-07-21T16:36:49,627   creating build/bdist.linux-armv7l/wheel/BigphASE-0.1.2.data
2024-07-21T16:36:49,627   creating build/bdist.linux-armv7l/wheel/BigphASE-0.1.2.data/scripts
2024-07-21T16:36:49,629   copying build/scripts-3.9/BigphASEtools -> build/bdist.linux-armv7l/wheel/BigphASE-0.1.2.data/scripts
2024-07-21T16:36:49,631   changing mode of build/bdist.linux-armv7l/wheel/BigphASE-0.1.2.data/scripts/BigphASEtools to 755
2024-07-21T16:36:49,633   Removed directory /tmp/pip-wheel-b3a2th8q/bigphase_6a0f222e25d34a81a148817acb3392ee/src/BigphASE/delta2hap/include
2024-07-21T16:36:49,636   Removed directory /tmp/pip-wheel-b3a2th8q/bigphase_6a0f222e25d34a81a148817acb3392ee/src/BigphASE/delta2hap/src
2024-07-21T16:36:49,637   Removed file /tmp/pip-wheel-b3a2th8q/bigphase_6a0f222e25d34a81a148817acb3392ee/src/BigphASE/delta2hap/CMakeLists.txt
2024-07-21T16:36:49,650   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2024-07-21T16:36:49,655   creating build/bdist.linux-armv7l/wheel/BigphASE-0.1.2.dist-info/WHEEL
2024-07-21T16:36:49,657   creating '/tmp/pip-wheel-h0asza98/BigphASE-0.1.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-07-21T16:36:49,660   adding 'BigphASE/__init__.py'
2024-07-21T16:36:49,662   adding 'BigphASE/maker.py'
2024-07-21T16:36:49,664   adding 'BigphASE/options.py'
2024-07-21T16:36:49,666   adding 'BigphASE/utils.py'
2024-07-21T16:36:49,668   adding 'BigphASE/delta2hap/CMakeLists.txt'
2024-07-21T16:36:49,714   adding 'BigphASE/delta2hap/bin/delta2hap'
2024-07-21T16:36:49,719   adding 'BigphASE/delta2hap/include/delta.h'
2024-07-21T16:36:49,721   adding 'BigphASE/delta2hap/include/redirect_to_pager.h'
2024-07-21T16:36:49,722   adding 'BigphASE/delta2hap/include/show-vcf.h'
2024-07-21T16:36:49,724   adding 'BigphASE/delta2hap/include/sw_alignscore.h'
2024-07-21T16:36:49,726   adding 'BigphASE/delta2hap/include/tigrinc.h'
2024-07-21T16:36:49,727   adding 'BigphASE/delta2hap/include/translate.h'
2024-07-21T16:36:49,732   adding 'BigphASE/delta2hap/src/delta.cpp'
2024-07-21T16:36:49,736   adding 'BigphASE/delta2hap/src/delta2hap.cpp'
2024-07-21T16:36:49,738   adding 'BigphASE/delta2hap/src/tigrinc.cpp'
2024-07-21T16:36:49,739   adding 'BigphASE/delta2hap/src/translate.cpp'
2024-07-21T16:36:49,742   adding 'BigphASE-0.1.2.data/scripts/BigphASEtools'
2024-07-21T16:36:49,749   adding 'BigphASE-0.1.2.dist-info/LICENSE'
2024-07-21T16:36:49,750   adding 'BigphASE-0.1.2.dist-info/METADATA'
2024-07-21T16:36:49,751   adding 'BigphASE-0.1.2.dist-info/WHEEL'
2024-07-21T16:36:49,752   adding 'BigphASE-0.1.2.dist-info/top_level.txt'
2024-07-21T16:36:49,753   adding 'BigphASE-0.1.2.dist-info/RECORD'
2024-07-21T16:36:49,756   removing build/bdist.linux-armv7l/wheel
2024-07-21T16:36:49,876   Building wheel for bigphase (setup.py): finished with status 'done'
2024-07-21T16:36:49,880   Created wheel for bigphase: filename=BigphASE-0.1.2-cp39-cp39-linux_armv7l.whl size=129889 sha256=2cfe64839d647121708fdf129cc0fc7c51eb591f04de3e64d058a728e10993fc
2024-07-21T16:36:49,882   Stored in directory: /tmp/pip-ephem-wheel-cache-7f3rhqj0/wheels/c1/cf/6e/f5a2b35ef097237d52acec927c999382f6b3955b9a5355887e
2024-07-21T16:36:49,894 Successfully built bigphase
2024-07-21T16:36:49,901 Removed build tracker: '/tmp/pip-build-tracker-4mrig47c'