2024-08-01T18:17:35,020 Created temporary directory: /tmp/pip-build-tracker-sjibnma2 2024-08-01T18:17:35,022 Initialized build tracking at /tmp/pip-build-tracker-sjibnma2 2024-08-01T18:17:35,022 Created build tracker: /tmp/pip-build-tracker-sjibnma2 2024-08-01T18:17:35,023 Entered build tracker: /tmp/pip-build-tracker-sjibnma2 2024-08-01T18:17:35,024 Created temporary directory: /tmp/pip-wheel-sr847w_3 2024-08-01T18:17:35,028 Created temporary directory: /tmp/pip-ephem-wheel-cache-ty66ie1t 2024-08-01T18:17:35,055 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-08-01T18:17:35,058 2 location(s) to search for versions of fugassem: 2024-08-01T18:17:35,058 * https://pypi.org/simple/fugassem/ 2024-08-01T18:17:35,058 * https://www.piwheels.org/simple/fugassem/ 2024-08-01T18:17:35,059 Fetching project page and analyzing links: https://pypi.org/simple/fugassem/ 2024-08-01T18:17:35,059 Getting page https://pypi.org/simple/fugassem/ 2024-08-01T18:17:35,061 Found index url https://pypi.org/simple/ 2024-08-01T18:17:35,158 Fetched page https://pypi.org/simple/fugassem/ as application/vnd.pypi.simple.v1+json 2024-08-01T18:17:35,159 Skipping link: No binaries permitted for fugassem: https://files.pythonhosted.org/packages/a8/11/3b98faf4d0ae86ca8b47e66542298131299e1a5690ed402c1fb2c9a7b6bd/fugassem-0.3.6-py3-none-any.whl (from https://pypi.org/simple/fugassem/) 2024-08-01T18:17:35,160 Found link https://files.pythonhosted.org/packages/81/e4/4090ea4340428327948ac4f341b9a6b2dc37224b05302345e23b379d8eef/fugassem-0.3.6.tar.gz (from https://pypi.org/simple/fugassem/), version: 0.3.6 2024-08-01T18:17:35,161 Fetching project page and analyzing links: https://www.piwheels.org/simple/fugassem/ 2024-08-01T18:17:35,161 Getting page https://www.piwheels.org/simple/fugassem/ 2024-08-01T18:17:35,163 Found index url https://www.piwheels.org/simple/ 2024-08-01T18:17:35,209 Fetched page https://www.piwheels.org/simple/fugassem/ as text/html 2024-08-01T18:17:35,210 Skipping link: not a file: https://www.piwheels.org/simple/fugassem/ 2024-08-01T18:17:35,211 Skipping link: not a file: https://pypi.org/simple/fugassem/ 2024-08-01T18:17:35,230 Given no hashes to check 1 links for project 'fugassem': discarding no candidates 2024-08-01T18:17:35,248 Collecting fugassem==0.3.6 2024-08-01T18:17:35,250 Created temporary directory: /tmp/pip-unpack-es2lyz5e 2024-08-01T18:17:35,346 Downloading fugassem-0.3.6.tar.gz (9.9 MB) 2024-08-01T18:17:38,528 Added fugassem==0.3.6 from https://files.pythonhosted.org/packages/81/e4/4090ea4340428327948ac4f341b9a6b2dc37224b05302345e23b379d8eef/fugassem-0.3.6.tar.gz to build tracker '/tmp/pip-build-tracker-sjibnma2' 2024-08-01T18:17:38,531 Running setup.py (path:/tmp/pip-wheel-sr847w_3/fugassem_30c3084a3aeb4203aaef852749e3b3b4/setup.py) egg_info for package fugassem 2024-08-01T18:17:38,531 Created temporary directory: /tmp/pip-pip-egg-info-b0ev6h0j 2024-08-01T18:17:38,532 Preparing metadata (setup.py): started 2024-08-01T18:17:38,534 Running command python setup.py egg_info 2024-08-01T18:17:39,714 running egg_info 2024-08-01T18:17:39,715 creating /tmp/pip-pip-egg-info-b0ev6h0j/fugassem.egg-info 2024-08-01T18:17:39,744 writing /tmp/pip-pip-egg-info-b0ev6h0j/fugassem.egg-info/PKG-INFO 2024-08-01T18:17:39,748 writing dependency_links to /tmp/pip-pip-egg-info-b0ev6h0j/fugassem.egg-info/dependency_links.txt 2024-08-01T18:17:39,751 writing entry points to /tmp/pip-pip-egg-info-b0ev6h0j/fugassem.egg-info/entry_points.txt 2024-08-01T18:17:39,753 writing top-level names to /tmp/pip-pip-egg-info-b0ev6h0j/fugassem.egg-info/top_level.txt 2024-08-01T18:17:39,754 writing manifest file '/tmp/pip-pip-egg-info-b0ev6h0j/fugassem.egg-info/SOURCES.txt' 2024-08-01T18:17:39,882 reading manifest file '/tmp/pip-pip-egg-info-b0ev6h0j/fugassem.egg-info/SOURCES.txt' 2024-08-01T18:17:39,883 reading manifest template 'MANIFEST.in' 2024-08-01T18:17:39,905 adding license file 'LICENSE' 2024-08-01T18:17:39,909 writing manifest file '/tmp/pip-pip-egg-info-b0ev6h0j/fugassem.egg-info/SOURCES.txt' 2024-08-01T18:17:40,026 Preparing metadata (setup.py): finished with status 'done' 2024-08-01T18:17:40,031 Source in /tmp/pip-wheel-sr847w_3/fugassem_30c3084a3aeb4203aaef852749e3b3b4 has version 0.3.6, which satisfies requirement fugassem==0.3.6 from https://files.pythonhosted.org/packages/81/e4/4090ea4340428327948ac4f341b9a6b2dc37224b05302345e23b379d8eef/fugassem-0.3.6.tar.gz 2024-08-01T18:17:40,031 Removed fugassem==0.3.6 from https://files.pythonhosted.org/packages/81/e4/4090ea4340428327948ac4f341b9a6b2dc37224b05302345e23b379d8eef/fugassem-0.3.6.tar.gz from build tracker '/tmp/pip-build-tracker-sjibnma2' 2024-08-01T18:17:40,035 Created temporary directory: /tmp/pip-unpack-c44llrd1 2024-08-01T18:17:40,036 Created temporary directory: /tmp/pip-unpack-hu8368p4 2024-08-01T18:17:40,037 Building wheels for collected packages: fugassem 2024-08-01T18:17:40,041 Created temporary directory: /tmp/pip-wheel-6durdwzt 2024-08-01T18:17:40,042 Building wheel for fugassem (setup.py): started 2024-08-01T18:17:40,043 Destination directory: /tmp/pip-wheel-6durdwzt 2024-08-01T18:17:40,043 Running command python setup.py bdist_wheel 2024-08-01T18:17:41,116 running bdist_wheel 2024-08-01T18:17:41,263 running build 2024-08-01T18:17:41,264 running build_py 2024-08-01T18:17:41,294 creating build 2024-08-01T18:17:41,294 creating build/lib 2024-08-01T18:17:41,295 creating build/lib/fugassem 2024-08-01T18:17:41,296 copying fugassem/fugassem.py -> build/lib/fugassem 2024-08-01T18:17:41,300 copying fugassem/utilities.py -> build/lib/fugassem 2024-08-01T18:17:41,302 copying fugassem/config.py -> build/lib/fugassem 2024-08-01T18:17:41,304 copying fugassem/__init__.py -> build/lib/fugassem 2024-08-01T18:17:41,306 creating build/lib/fugassem/tools 2024-08-01T18:17:41,307 copying fugassem/tools/gene_abundance_indexRef.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,309 copying fugassem/tools/abundance_RPK.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,311 copying fugassem/tools/performance_vis.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,314 copying fugassem/tools/generate_stratified_mtx_input.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,316 copying fugassem/tools/extract_feature_subset.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,318 copying fugassem/tools/prepare_contig.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,320 copying fugassem/tools/prepare_coann_pairs.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,322 copying fugassem/tools/abundance_smoothing.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,325 copying fugassem/tools/prepare_annotation.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,327 copying fugassem/tools/collect_seqSimilarity_results.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,329 copying fugassem/tools/sum_to_family_abundance.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,331 copying fugassem/tools/abundance_normalization.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,333 copying fugassem/tools/stratified_abundance.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,335 copying fugassem/tools/gene_abundance.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,338 copying fugassem/tools/__init__.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,339 copying fugassem/tools/prepare_seqSimilarity.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,342 copying fugassem/tools/generate_annotation_input.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,344 copying fugassem/tools/gene_catalog_abundance.py -> build/lib/fugassem/tools 2024-08-01T18:17:41,347 creating build/lib/fugassem/tasks 2024-08-01T18:17:41,348 copying fugassem/tasks/fugassem_preprocessing.py -> build/lib/fugassem/tasks 2024-08-01T18:17:41,351 copying fugassem/tasks/fugassem_prediction.py -> build/lib/fugassem/tasks 2024-08-01T18:17:41,353 copying fugassem/tasks/fugassem_process.py -> build/lib/fugassem/tasks 2024-08-01T18:17:41,356 copying fugassem/tasks/__init__.py -> build/lib/fugassem/tasks 2024-08-01T18:17:41,358 creating build/lib/fugassem/preprocess 2024-08-01T18:17:41,359 copying fugassem/preprocess/calculate_correlation.py -> build/lib/fugassem/preprocess 2024-08-01T18:17:41,362 copying fugassem/preprocess/convert_coann.py -> build/lib/fugassem/preprocess 2024-08-01T18:17:41,364 copying fugassem/preprocess/refine_anns.py -> build/lib/fugassem/preprocess 2024-08-01T18:17:41,366 copying fugassem/preprocess/impute_nan.py -> build/lib/fugassem/preprocess 2024-08-01T18:17:41,368 copying fugassem/preprocess/refine_abunds.py -> build/lib/fugassem/preprocess 2024-08-01T18:17:41,370 copying fugassem/preprocess/__init__.py -> build/lib/fugassem/preprocess 2024-08-01T18:17:41,371 copying fugassem/preprocess/collect_features.py -> build/lib/fugassem/preprocess 2024-08-01T18:17:41,373 copying fugassem/preprocess/split_taxa.py -> build/lib/fugassem/preprocess 2024-08-01T18:17:41,376 copying fugassem/preprocess/build_union_terms.py -> build/lib/fugassem/preprocess 2024-08-01T18:17:41,379 creating build/lib/fugassem/predict 2024-08-01T18:17:41,380 copying fugassem/predict/machine_learning.py -> build/lib/fugassem/predict 2024-08-01T18:17:41,382 copying fugassem/predict/collect_ml_results.py -> build/lib/fugassem/predict 2024-08-01T18:17:41,384 copying fugassem/predict/prepare_nextlayer_ml.py -> build/lib/fugassem/predict 2024-08-01T18:17:41,387 copying fugassem/predict/predict_function.py -> build/lib/fugassem/predict 2024-08-01T18:17:41,390 copying fugassem/predict/merged_prediction.py -> build/lib/fugassem/predict 2024-08-01T18:17:41,393 copying fugassem/predict/select_feature.py -> build/lib/fugassem/predict 2024-08-01T18:17:41,396 copying fugassem/predict/__init__.py -> build/lib/fugassem/predict 2024-08-01T18:17:41,398 creating build/lib/fugassem/common 2024-08-01T18:17:41,400 copying fugassem/common/transpose.py -> build/lib/fugassem/common 2024-08-01T18:17:41,402 copying fugassem/common/utils.py -> build/lib/fugassem/common 2024-08-01T18:17:41,405 copying fugassem/common/geneontology.py -> build/lib/fugassem/common 2024-08-01T18:17:41,408 copying fugassem/common/extract_feature_subset.py -> build/lib/fugassem/common 2024-08-01T18:17:41,411 copying fugassem/common/table2.py -> build/lib/fugassem/common 2024-08-01T18:17:41,414 copying fugassem/common/nancorrmp.py -> build/lib/fugassem/common 2024-08-01T18:17:41,417 copying fugassem/common/dictation.py -> build/lib/fugassem/common 2024-08-01T18:17:41,420 copying fugassem/common/table2_stats.py -> build/lib/fugassem/common 2024-08-01T18:17:41,422 copying fugassem/common/format_function.py -> build/lib/fugassem/common 2024-08-01T18:17:41,424 copying fugassem/common/__init__.py -> build/lib/fugassem/common 2024-08-01T18:17:41,431 creating build/lib/fugassem/workflows 2024-08-01T18:17:41,432 copying fugassem/workflows/fugassem_workflow.py -> build/lib/fugassem/workflows 2024-08-01T18:17:41,437 creating build/lib/fugassem/data 2024-08-01T18:17:41,438 creating build/lib/fugassem/data/GO 2024-08-01T18:17:41,439 copying fugassem/data/GO/go-basic.obo -> build/lib/fugassem/data/GO 2024-08-01T18:17:41,878 copying fugassem/data/GO/go.obo.gz -> build/lib/fugassem/data/GO 2024-08-01T18:17:41,950 running build_scripts 2024-08-01T18:17:41,951 creating build/scripts-3.11 2024-08-01T18:17:41,951 copying and adjusting fugassem/workflows/fugassem_workflow.py -> build/scripts-3.11 2024-08-01T18:17:41,954 changing mode of build/scripts-3.11/fugassem_workflow.py from 644 to 755 2024-08-01T18:17:41,984 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-08-01T18:17:41,984 !! 2024-08-01T18:17:41,985 ******************************************************************************** 2024-08-01T18:17:41,986 Please avoid running ``setup.py`` directly. 2024-08-01T18:17:41,986 Instead, use pypa/build, pypa/installer or other 2024-08-01T18:17:41,987 standards-based tools. 2024-08-01T18:17:41,989 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-08-01T18:17:41,989 ******************************************************************************** 2024-08-01T18:17:41,990 !! 2024-08-01T18:17:41,991 self.initialize_options() 2024-08-01T18:17:42,013 installing to build/bdist.linux-armv7l/wheel 2024-08-01T18:17:42,014 running install 2024-08-01T18:17:42,039 running install_lib 2024-08-01T18:17:42,066 creating build/bdist.linux-armv7l 2024-08-01T18:17:42,067 creating build/bdist.linux-armv7l/wheel 2024-08-01T18:17:42,069 creating build/bdist.linux-armv7l/wheel/fugassem 2024-08-01T18:17:42,070 copying build/lib/fugassem/fugassem.py -> build/bdist.linux-armv7l/wheel/fugassem 2024-08-01T18:17:42,072 creating build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,073 copying build/lib/fugassem/tools/gene_abundance_indexRef.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,075 copying build/lib/fugassem/tools/abundance_RPK.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,077 copying build/lib/fugassem/tools/performance_vis.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,079 copying build/lib/fugassem/tools/generate_stratified_mtx_input.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,081 copying build/lib/fugassem/tools/extract_feature_subset.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,084 copying build/lib/fugassem/tools/prepare_contig.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,086 copying build/lib/fugassem/tools/prepare_coann_pairs.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,088 copying build/lib/fugassem/tools/abundance_smoothing.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,090 copying build/lib/fugassem/tools/prepare_annotation.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,092 copying build/lib/fugassem/tools/collect_seqSimilarity_results.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,094 copying build/lib/fugassem/tools/sum_to_family_abundance.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,096 copying build/lib/fugassem/tools/abundance_normalization.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,098 copying build/lib/fugassem/tools/stratified_abundance.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,100 copying build/lib/fugassem/tools/gene_abundance.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,103 copying build/lib/fugassem/tools/__init__.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,104 copying build/lib/fugassem/tools/prepare_seqSimilarity.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,106 copying build/lib/fugassem/tools/generate_annotation_input.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,109 copying build/lib/fugassem/tools/gene_catalog_abundance.py -> build/bdist.linux-armv7l/wheel/fugassem/tools 2024-08-01T18:17:42,111 copying build/lib/fugassem/utilities.py -> build/bdist.linux-armv7l/wheel/fugassem 2024-08-01T18:17:42,114 creating build/bdist.linux-armv7l/wheel/fugassem/tasks 2024-08-01T18:17:42,115 copying build/lib/fugassem/tasks/fugassem_preprocessing.py -> build/bdist.linux-armv7l/wheel/fugassem/tasks 2024-08-01T18:17:42,118 copying build/lib/fugassem/tasks/fugassem_prediction.py -> build/bdist.linux-armv7l/wheel/fugassem/tasks 2024-08-01T18:17:42,121 copying build/lib/fugassem/tasks/fugassem_process.py -> build/bdist.linux-armv7l/wheel/fugassem/tasks 2024-08-01T18:17:42,123 copying build/lib/fugassem/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/fugassem/tasks 2024-08-01T18:17:42,125 copying build/lib/fugassem/config.py -> build/bdist.linux-armv7l/wheel/fugassem 2024-08-01T18:17:42,127 creating build/bdist.linux-armv7l/wheel/fugassem/preprocess 2024-08-01T18:17:42,129 copying build/lib/fugassem/preprocess/calculate_correlation.py -> build/bdist.linux-armv7l/wheel/fugassem/preprocess 2024-08-01T18:17:42,131 copying build/lib/fugassem/preprocess/convert_coann.py -> build/bdist.linux-armv7l/wheel/fugassem/preprocess 2024-08-01T18:17:42,133 copying build/lib/fugassem/preprocess/refine_anns.py -> build/bdist.linux-armv7l/wheel/fugassem/preprocess 2024-08-01T18:17:42,136 copying build/lib/fugassem/preprocess/impute_nan.py -> build/bdist.linux-armv7l/wheel/fugassem/preprocess 2024-08-01T18:17:42,138 copying build/lib/fugassem/preprocess/refine_abunds.py -> build/bdist.linux-armv7l/wheel/fugassem/preprocess 2024-08-01T18:17:42,140 copying build/lib/fugassem/preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/fugassem/preprocess 2024-08-01T18:17:42,141 copying build/lib/fugassem/preprocess/collect_features.py -> build/bdist.linux-armv7l/wheel/fugassem/preprocess 2024-08-01T18:17:42,144 copying build/lib/fugassem/preprocess/split_taxa.py -> build/bdist.linux-armv7l/wheel/fugassem/preprocess 2024-08-01T18:17:42,146 copying build/lib/fugassem/preprocess/build_union_terms.py -> build/bdist.linux-armv7l/wheel/fugassem/preprocess 2024-08-01T18:17:42,149 creating build/bdist.linux-armv7l/wheel/fugassem/predict 2024-08-01T18:17:42,150 copying build/lib/fugassem/predict/machine_learning.py -> build/bdist.linux-armv7l/wheel/fugassem/predict 2024-08-01T18:17:42,152 copying build/lib/fugassem/predict/collect_ml_results.py -> build/bdist.linux-armv7l/wheel/fugassem/predict 2024-08-01T18:17:42,155 copying build/lib/fugassem/predict/prepare_nextlayer_ml.py -> build/bdist.linux-armv7l/wheel/fugassem/predict 2024-08-01T18:17:42,157 copying build/lib/fugassem/predict/predict_function.py -> build/bdist.linux-armv7l/wheel/fugassem/predict 2024-08-01T18:17:42,159 copying build/lib/fugassem/predict/merged_prediction.py -> build/bdist.linux-armv7l/wheel/fugassem/predict 2024-08-01T18:17:42,162 copying build/lib/fugassem/predict/select_feature.py -> build/bdist.linux-armv7l/wheel/fugassem/predict 2024-08-01T18:17:42,164 copying build/lib/fugassem/predict/__init__.py -> build/bdist.linux-armv7l/wheel/fugassem/predict 2024-08-01T18:17:42,166 copying build/lib/fugassem/__init__.py -> build/bdist.linux-armv7l/wheel/fugassem 2024-08-01T18:17:42,168 creating build/bdist.linux-armv7l/wheel/fugassem/data 2024-08-01T18:17:42,169 creating build/bdist.linux-armv7l/wheel/fugassem/data/GO 2024-08-01T18:17:42,170 copying build/lib/fugassem/data/GO/go-basic.obo -> build/bdist.linux-armv7l/wheel/fugassem/data/GO 2024-08-01T18:17:42,847 copying build/lib/fugassem/data/GO/go.obo.gz -> build/bdist.linux-armv7l/wheel/fugassem/data/GO 2024-08-01T18:17:43,681 creating build/bdist.linux-armv7l/wheel/fugassem/common 2024-08-01T18:17:43,684 copying build/lib/fugassem/common/transpose.py -> build/bdist.linux-armv7l/wheel/fugassem/common 2024-08-01T18:17:43,688 copying build/lib/fugassem/common/utils.py -> build/bdist.linux-armv7l/wheel/fugassem/common 2024-08-01T18:17:43,692 copying build/lib/fugassem/common/geneontology.py -> build/bdist.linux-armv7l/wheel/fugassem/common 2024-08-01T18:17:43,696 copying build/lib/fugassem/common/extract_feature_subset.py -> build/bdist.linux-armv7l/wheel/fugassem/common 2024-08-01T18:17:43,699 copying build/lib/fugassem/common/table2.py -> build/bdist.linux-armv7l/wheel/fugassem/common 2024-08-01T18:17:43,703 copying build/lib/fugassem/common/nancorrmp.py -> build/bdist.linux-armv7l/wheel/fugassem/common 2024-08-01T18:17:43,706 copying build/lib/fugassem/common/dictation.py -> build/bdist.linux-armv7l/wheel/fugassem/common 2024-08-01T18:17:43,709 copying build/lib/fugassem/common/table2_stats.py -> build/bdist.linux-armv7l/wheel/fugassem/common 2024-08-01T18:17:43,712 copying build/lib/fugassem/common/format_function.py -> build/bdist.linux-armv7l/wheel/fugassem/common 2024-08-01T18:17:43,715 copying build/lib/fugassem/common/__init__.py -> build/bdist.linux-armv7l/wheel/fugassem/common 2024-08-01T18:17:43,718 creating build/bdist.linux-armv7l/wheel/fugassem/workflows 2024-08-01T18:17:43,720 copying build/lib/fugassem/workflows/fugassem_workflow.py -> build/bdist.linux-armv7l/wheel/fugassem/workflows 2024-08-01T18:17:43,723 running install_egg_info 2024-08-01T18:17:43,768 running egg_info 2024-08-01T18:17:43,806 writing fugassem.egg-info/PKG-INFO 2024-08-01T18:17:43,809 writing dependency_links to fugassem.egg-info/dependency_links.txt 2024-08-01T18:17:43,811 writing entry points to fugassem.egg-info/entry_points.txt 2024-08-01T18:17:43,813 writing top-level names to fugassem.egg-info/top_level.txt 2024-08-01T18:17:43,850 reading manifest file 'fugassem.egg-info/SOURCES.txt' 2024-08-01T18:17:43,859 reading manifest template 'MANIFEST.in' 2024-08-01T18:17:43,890 adding license file 'LICENSE' 2024-08-01T18:17:43,896 writing manifest file 'fugassem.egg-info/SOURCES.txt' 2024-08-01T18:17:43,898 Copying fugassem.egg-info to build/bdist.linux-armv7l/wheel/fugassem-0.3.6-py3.11.egg-info 2024-08-01T18:17:43,909 running install_scripts 2024-08-01T18:17:43,910 creating build/bdist.linux-armv7l/wheel/fugassem-0.3.6.data 2024-08-01T18:17:43,910 creating build/bdist.linux-armv7l/wheel/fugassem-0.3.6.data/scripts 2024-08-01T18:17:43,911 copying build/scripts-3.11/fugassem_workflow.py -> build/bdist.linux-armv7l/wheel/fugassem-0.3.6.data/scripts 2024-08-01T18:17:43,914 changing mode of build/bdist.linux-armv7l/wheel/fugassem-0.3.6.data/scripts/fugassem_workflow.py to 755 2024-08-01T18:17:43,926 creating build/bdist.linux-armv7l/wheel/fugassem-0.3.6.dist-info/WHEEL 2024-08-01T18:17:43,928 creating '/tmp/pip-wheel-6durdwzt/fugassem-0.3.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-08-01T18:17:43,930 adding 'fugassem/__init__.py' 2024-08-01T18:17:43,932 adding 'fugassem/config.py' 2024-08-01T18:17:43,933 adding 'fugassem/fugassem.py' 2024-08-01T18:17:43,936 adding 'fugassem/utilities.py' 2024-08-01T18:17:43,938 adding 'fugassem/common/__init__.py' 2024-08-01T18:17:43,940 adding 'fugassem/common/dictation.py' 2024-08-01T18:17:43,941 adding 'fugassem/common/extract_feature_subset.py' 2024-08-01T18:17:43,942 adding 'fugassem/common/format_function.py' 2024-08-01T18:17:43,945 adding 'fugassem/common/geneontology.py' 2024-08-01T18:17:43,946 adding 'fugassem/common/nancorrmp.py' 2024-08-01T18:17:43,950 adding 'fugassem/common/table2.py' 2024-08-01T18:17:43,951 adding 'fugassem/common/table2_stats.py' 2024-08-01T18:17:43,952 adding 'fugassem/common/transpose.py' 2024-08-01T18:17:43,954 adding 'fugassem/common/utils.py' 2024-08-01T18:17:46,321 adding 'fugassem/data/GO/go-basic.obo' 2024-08-01T18:17:47,008 adding 'fugassem/data/GO/go.obo.gz' 2024-08-01T18:17:47,038 adding 'fugassem/predict/__init__.py' 2024-08-01T18:17:47,039 adding 'fugassem/predict/collect_ml_results.py' 2024-08-01T18:17:47,042 adding 'fugassem/predict/machine_learning.py' 2024-08-01T18:17:47,043 adding 'fugassem/predict/merged_prediction.py' 2024-08-01T18:17:47,046 adding 'fugassem/predict/predict_function.py' 2024-08-01T18:17:47,047 adding 'fugassem/predict/prepare_nextlayer_ml.py' 2024-08-01T18:17:47,049 adding 'fugassem/predict/select_feature.py' 2024-08-01T18:17:47,051 adding 'fugassem/preprocess/__init__.py' 2024-08-01T18:17:47,053 adding 'fugassem/preprocess/build_union_terms.py' 2024-08-01T18:17:47,055 adding 'fugassem/preprocess/calculate_correlation.py' 2024-08-01T18:17:47,056 adding 'fugassem/preprocess/collect_features.py' 2024-08-01T18:17:47,058 adding 'fugassem/preprocess/convert_coann.py' 2024-08-01T18:17:47,059 adding 'fugassem/preprocess/impute_nan.py' 2024-08-01T18:17:47,061 adding 'fugassem/preprocess/refine_abunds.py' 2024-08-01T18:17:47,063 adding 'fugassem/preprocess/refine_anns.py' 2024-08-01T18:17:47,064 adding 'fugassem/preprocess/split_taxa.py' 2024-08-01T18:17:47,066 adding 'fugassem/tasks/__init__.py' 2024-08-01T18:17:47,068 adding 'fugassem/tasks/fugassem_prediction.py' 2024-08-01T18:17:47,072 adding 'fugassem/tasks/fugassem_preprocessing.py' 2024-08-01T18:17:47,074 adding 'fugassem/tasks/fugassem_process.py' 2024-08-01T18:17:47,075 adding 'fugassem/tools/__init__.py' 2024-08-01T18:17:47,077 adding 'fugassem/tools/abundance_RPK.py' 2024-08-01T18:17:47,079 adding 'fugassem/tools/abundance_normalization.py' 2024-08-01T18:17:47,080 adding 'fugassem/tools/abundance_smoothing.py' 2024-08-01T18:17:47,082 adding 'fugassem/tools/collect_seqSimilarity_results.py' 2024-08-01T18:17:47,083 adding 'fugassem/tools/extract_feature_subset.py' 2024-08-01T18:17:47,084 adding 'fugassem/tools/gene_abundance.py' 2024-08-01T18:17:47,086 adding 'fugassem/tools/gene_abundance_indexRef.py' 2024-08-01T18:17:47,087 adding 'fugassem/tools/gene_catalog_abundance.py' 2024-08-01T18:17:47,090 adding 'fugassem/tools/generate_annotation_input.py' 2024-08-01T18:17:47,092 adding 'fugassem/tools/generate_stratified_mtx_input.py' 2024-08-01T18:17:47,094 adding 'fugassem/tools/performance_vis.py' 2024-08-01T18:17:47,096 adding 'fugassem/tools/prepare_annotation.py' 2024-08-01T18:17:47,097 adding 'fugassem/tools/prepare_coann_pairs.py' 2024-08-01T18:17:47,099 adding 'fugassem/tools/prepare_contig.py' 2024-08-01T18:17:47,101 adding 'fugassem/tools/prepare_seqSimilarity.py' 2024-08-01T18:17:47,102 adding 'fugassem/tools/stratified_abundance.py' 2024-08-01T18:17:47,104 adding 'fugassem/tools/sum_to_family_abundance.py' 2024-08-01T18:17:47,107 adding 'fugassem/workflows/fugassem_workflow.py' 2024-08-01T18:17:47,111 adding 'fugassem-0.3.6.data/scripts/fugassem_workflow.py' 2024-08-01T18:17:47,113 adding 'fugassem-0.3.6.dist-info/LICENSE' 2024-08-01T18:17:47,114 adding 'fugassem-0.3.6.dist-info/METADATA' 2024-08-01T18:17:47,115 adding 'fugassem-0.3.6.dist-info/WHEEL' 2024-08-01T18:17:47,117 adding 'fugassem-0.3.6.dist-info/entry_points.txt' 2024-08-01T18:17:47,118 adding 'fugassem-0.3.6.dist-info/top_level.txt' 2024-08-01T18:17:47,119 adding 'fugassem-0.3.6.dist-info/RECORD' 2024-08-01T18:17:47,221 removing build/bdist.linux-armv7l/wheel 2024-08-01T18:17:47,368 Building wheel for fugassem (setup.py): finished with status 'done' 2024-08-01T18:17:47,458 Created wheel for fugassem: filename=fugassem-0.3.6-py3-none-any.whl size=8899974 sha256=5b176b302bdf4675d168571673169dbcec7f4210357aba5f48e87b3afa11b74a 2024-08-01T18:17:47,460 Stored in directory: /tmp/pip-ephem-wheel-cache-ty66ie1t/wheels/0f/15/a6/4c40768192455b470dbba2cf388ac81a1cd9b500c06ee7090b 2024-08-01T18:17:47,473 Successfully built fugassem 2024-08-01T18:17:47,696 Removed build tracker: '/tmp/pip-build-tracker-sjibnma2'