2024-09-27T19:27:05,603 Created temporary directory: /tmp/pip-build-tracker-hmair09z 2024-09-27T19:27:05,605 Initialized build tracking at /tmp/pip-build-tracker-hmair09z 2024-09-27T19:27:05,605 Created build tracker: /tmp/pip-build-tracker-hmair09z 2024-09-27T19:27:05,606 Entered build tracker: /tmp/pip-build-tracker-hmair09z 2024-09-27T19:27:05,606 Created temporary directory: /tmp/pip-wheel-7wseiek2 2024-09-27T19:27:05,610 Created temporary directory: /tmp/pip-ephem-wheel-cache-myf2mj4i 2024-09-27T19:27:05,653 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-09-27T19:27:05,656 2 location(s) to search for versions of splam: 2024-09-27T19:27:05,656 * https://pypi.org/simple/splam/ 2024-09-27T19:27:05,656 * https://www.piwheels.org/simple/splam/ 2024-09-27T19:27:05,657 Fetching project page and analyzing links: https://pypi.org/simple/splam/ 2024-09-27T19:27:05,658 Getting page https://pypi.org/simple/splam/ 2024-09-27T19:27:05,659 Found index url https://pypi.org/simple/ 2024-09-27T19:27:05,880 Fetched page https://pypi.org/simple/splam/ as application/vnd.pypi.simple.v1+json 2024-09-27T19:27:05,892 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/57/2a/d68f86c46b3152c9072975cb1c8b3f2345e0f71cea763c0635ca8c5e0261/splam-0.2.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,893 Found link https://files.pythonhosted.org/packages/ba/e8/4cf0f802bf26fd6587829e3688109caef6d26e13d19ce003ac876212da15/splam-0.2.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.9 2024-09-27T19:27:05,894 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f0/97/c31f00ac8a786213c4a50dd993cd04e61af08766e9559f244fb9c3929178/splam-0.2.10-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,895 Found link https://files.pythonhosted.org/packages/72/d1/671663c98d0cfca3218b880633390493fcebf9972175a7c4d2752259f2ea/splam-0.2.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.10 2024-09-27T19:27:05,896 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/ad/36/84239a43f206dfbfe07c6e6f76ef8c54235439210640aeacc8cb20e24c2e/splam-0.2.11-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,897 Found link https://files.pythonhosted.org/packages/c7/b3/96a175c203358d735694d7d5fd9261ef8683af968e14e473e823d159cee1/splam-0.2.11.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.11 2024-09-27T19:27:05,897 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/a5/f5/e15307ccb65ec9c225b7f1af65ee2c8880ba8eb049d386f4c9da459b2e1e/splam-0.2.12-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,898 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ba/88/6cac004352d4aa92aabdfd31f9b96919f8044db486185d3fd3c924583bc8/splam-0.2.12-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,899 Found link https://files.pythonhosted.org/packages/32/fa/a9795e9df88e8ea6c6788ae171702d5f9d8ce2c3472408ab0784f08a7b91/splam-0.2.12.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.12 2024-09-27T19:27:05,900 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/59/88/fefee12f8e44d6879a0970d37b42fc4dc54010f78b1ee91f6db366c1f125/splam-0.2.13-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,901 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/64/13/d601e5e99b31891d95bc0a6201367dab38f12faaadcb6aedbee7725dca71/splam-0.2.13-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,902 Found link https://files.pythonhosted.org/packages/cf/fb/2e5425fcdb2e5fd7ff963b174b1582816154fd0373bbc96edf4e851d272d/splam-0.2.13.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.13 2024-09-27T19:27:05,902 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/da/65/a129eabb1d673da72f1d7dfd3495c01c89da78569b7f2dba2c746a0c0f29/splam-0.2.14-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,903 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/79/2fdaa68664126c8c71bac526b41e1e35e4195879170c8129a8d482f3ae7b/splam-0.2.14-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,904 Found link https://files.pythonhosted.org/packages/9b/3f/d7dd2411528494ed5062665c3b5d5d7d8422fd11fa181d5fc01ea67d7dbf/splam-0.2.14.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.14 2024-09-27T19:27:05,904 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f4/9a/e7d1f5f16d77888ac5d0935e180fa2210e875ff487909519d6871e1301da/splam-0.2.15-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,905 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/40/b6/eda61824794c736e52c09353dfbbd70eea4d0f0ab31896f3688d269ab64b/splam-0.2.15-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,906 Found link https://files.pythonhosted.org/packages/29/d0/5e9ef93e49636308cb56b70a06c8932321cb60a4aae678d8bb1d213b52b5/splam-0.2.15.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.15 2024-09-27T19:27:05,906 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e5/17/caa4b05a6370f2d197ec174fe1968f63acc357db5923efca0860b3a5e141/splam-0.2.16-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,907 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fe/a5/d90a02293e34acf5515a8f435ae90afeb823336d6232a7bedf01436a00f9/splam-0.2.17-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,908 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ef/af/7db5183d8c36a250bb4547c58610624b4d1067ea0eb119addc8986ce6ec1/splam-0.2.17-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,909 Found link https://files.pythonhosted.org/packages/26/3a/0e89dd56f9617853061d7c4ed6a220a414a01bba9f0005e54da52a1ad22e/splam-0.2.17.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.17 2024-09-27T19:27:05,909 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/bd/50/ae02dcd9e7c53df59acc9ad83ac389a886e55254cd6953614d43f0eaac60/splam-0.3.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,910 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/78/0b/8b0b45b16922007f88c9b81357cde8b84f9ea45327104b00724024e722ec/splam-0.3.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,911 Found link https://files.pythonhosted.org/packages/e5/c7/4bf13e849aefc7cfdd94f142e6267e4937c61d7fb9fbfe1119953f6a5e72/splam-0.3.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.3.0 2024-09-27T19:27:05,912 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/55/d8079e937d1f568ac9358237871b9d4d6d28abf1e8e8ec2b8073db7b166a/splam-0.3.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,912 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6d/9f/5e7c396bd04da9866f89f51574bd3fec1e691b279116e4d4de92b75b6538/splam-1.0.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,913 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/56/ae/c9e443ec09db88b2b2aaa18ebc6b12751b321d731ce21964ee188067bb0f/splam-1.0.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,915 Found link https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.0 2024-09-27T19:27:05,915 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/43/45/27c64605655d3127bf6155bc060f98fb565e631553e4f0e0a53d3922ebf3/splam-1.0.1-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,916 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/4d/0b5427df4d5d74ba5a98e28805b45fee4b15d2cad1e9aa91069306c29da7/splam-1.0.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,916 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/da/e1/11ee65eb50a2f628f92249d84cd72eddbc1386afbc82c7410fceb627d995/splam-1.0.1-py3.9-linux-x86_64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,917 Found link https://files.pythonhosted.org/packages/ad/3c/5a2fcc44ca9afa6bc1cb4fe6a30ba6495f9c1359c6b610536cb6c7998ca1/splam-1.0.1.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.1 2024-09-27T19:27:05,917 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6a/e7/e7827b0d637f018ef8d18ea969985ce37ffa520fd1bf6d0e8d43d72b749e/splam-1.0.2-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,918 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f2/ba/94da0985b6db88ba663b4e56a395d74d04283a79d0fdf476763251f5679f/splam-1.0.2-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,919 Found link https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.2 2024-09-27T19:27:05,920 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/30/c9/23c10c8ee217996cc58e6f16ffc732657d1cb3011f7cbc41ebb51927bbbb/splam-1.0.3-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,921 Found link https://files.pythonhosted.org/packages/b3/80/1ff08f5e516c2ce233a75e61e8ce3dacc34b00bd2cae4fae0d01b0d758e9/splam-1.0.3.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.3 2024-09-27T19:27:05,921 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/70/bd/3aacba5a589a5a8d4688781f1376a822b1df05526355738a85f10a6f0c86/splam-1.0.4-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,922 Found link https://files.pythonhosted.org/packages/b3/ef/1c49f24a396880a7ac6773041c067d1418ca533df5018de37f1fb49f512a/splam-1.0.4.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.4 2024-09-27T19:27:05,923 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/54/7e/ce14252ed5cbc26ad69ffe8ec6909d91f2bed9f97749fb5ba0f43a935479/splam-1.0.5-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,924 Found link https://files.pythonhosted.org/packages/5f/dd/ac054961585d4e5d71c889e8840dc096a847ac38b04295f38dbe524718e5/splam-1.0.5.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.5 2024-09-27T19:27:05,924 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f7/1e/02d35d67ba3f32f629f40824705e8ef82b6a80914fef3ffa59bcea67c965/splam-1.0.6-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,926 Found link https://files.pythonhosted.org/packages/b2/7d/e8f8b51f071b0bc4e2a1a0cc31db50c9acecb68271cd5bd5e113c7442fed/splam-1.0.6.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.6 2024-09-27T19:27:05,926 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/1d/57/3fbf056633d3332ab938f761553161346599e27c5f5c66f605c08b4fb2b3/splam-1.0.7-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,927 Found link https://files.pythonhosted.org/packages/a5/b6/ffa6c7c753ce7d9989d0e3adcb5310ecf29429dce73ffe51f2b63434c9fc/splam-1.0.7.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.7 2024-09-27T19:27:05,927 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/35/fa/76bf21536e4f60a1caae0132889ab74457d9c75a9476c3d0ec7b578870af/splam-1.0.8-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,928 Found link https://files.pythonhosted.org/packages/a5/ad/6d3495d79895726b6df06f3cd667006e5316fa3235e6919b841057f6e666/splam-1.0.8.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.8 2024-09-27T19:27:05,929 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fc/24/c13538db2c354993494537d33e4138e39d65e83f947f55d6f9d599e12a63/splam-1.0.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,930 Found link https://files.pythonhosted.org/packages/4d/2c/303bafdffb18df8357ea5c7f2bc00f9e4afd9667b9f10b411091c3adc293/splam-1.0.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.9 2024-09-27T19:27:05,930 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/eb/97/6d184eef2d7511274e92d1be778a573a0c3148510a51b031cb2cf646dd8c/splam-1.0.10-cp38-cp38-macosx_14_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,931 Found link https://files.pythonhosted.org/packages/53/d4/4f1f5ed4879f56c7a5ede7cd1f5a3bd555e963abb61c148a8ebb648e5098/splam-1.0.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.10 2024-09-27T19:27:05,932 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/c2/5f/37e24ec88bf57ccda8b24cf6ec8a440dc74d6aeb2863d06466951e345c5e/splam-1.0.11-cp38-cp38-macosx_14_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:05,933 Found link https://files.pythonhosted.org/packages/bb/fb/2f3de06683e7885a6bde4e344cfa83eeb99f36585d10dd2dbbd645269442/splam-1.0.11.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.11 2024-09-27T19:27:05,934 Fetching project page and analyzing links: https://www.piwheels.org/simple/splam/ 2024-09-27T19:27:05,935 Getting page https://www.piwheels.org/simple/splam/ 2024-09-27T19:27:05,936 Found index url https://www.piwheels.org/simple/ 2024-09-27T19:27:06,101 Fetched page https://www.piwheels.org/simple/splam/ as text/html 2024-09-27T19:27:06,120 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.10-cp311-cp311-linux_armv6l.whl#sha256=f8fd14791d45e9f68a5167336d4dfc6230be3e3b3b4b1788d47b97c9545105ec (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:06,120 Skipping link: No binaries permitted for splam: 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https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv6l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:06,151 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv7l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:06,151 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv6l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:06,152 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv7l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:06,152 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv6l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:06,153 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv7l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:06,153 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp311-cp311-linux_armv6l.whl#sha256=3358137f046748462107e305dd9d042c880d1ac8e4b165f0ba3872db24bc2175 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:06,154 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp311-cp311-linux_armv7l.whl#sha256=3358137f046748462107e305dd9d042c880d1ac8e4b165f0ba3872db24bc2175 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:06,155 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv6l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:06,155 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv7l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:06,155 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv6l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:06,156 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv7l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:06,156 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv6l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:06,157 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv7l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:06,158 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv6l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:06,158 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv7l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T19:27:06,159 Skipping link: not a file: https://www.piwheels.org/simple/splam/ 2024-09-27T19:27:06,159 Skipping link: not a file: https://pypi.org/simple/splam/ 2024-09-27T19:27:06,179 Given no hashes to check 1 links for project 'splam': discarding no candidates 2024-09-27T19:27:06,182 Collecting splam==1.0.11 2024-09-27T19:27:06,185 Created temporary directory: /tmp/pip-unpack-4ve7bc5n 2024-09-27T19:27:06,413 Downloading splam-1.0.11.tar.gz (18.6 MB) 2024-09-27T19:27:15,459 Added splam==1.0.11 from https://files.pythonhosted.org/packages/bb/fb/2f3de06683e7885a6bde4e344cfa83eeb99f36585d10dd2dbbd645269442/splam-1.0.11.tar.gz to build tracker '/tmp/pip-build-tracker-hmair09z' 2024-09-27T19:27:15,461 Running setup.py (path:/tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/setup.py) egg_info for package splam 2024-09-27T19:27:15,462 Created temporary directory: /tmp/pip-pip-egg-info-pmic9wws 2024-09-27T19:27:15,463 Preparing metadata (setup.py): started 2024-09-27T19:27:15,465 Running command python setup.py egg_info 2024-09-27T19:27:16,576 running egg_info 2024-09-27T19:27:16,578 creating /tmp/pip-pip-egg-info-pmic9wws/splam.egg-info 2024-09-27T19:27:16,610 writing /tmp/pip-pip-egg-info-pmic9wws/splam.egg-info/PKG-INFO 2024-09-27T19:27:16,614 writing dependency_links to /tmp/pip-pip-egg-info-pmic9wws/splam.egg-info/dependency_links.txt 2024-09-27T19:27:16,616 writing entry points to /tmp/pip-pip-egg-info-pmic9wws/splam.egg-info/entry_points.txt 2024-09-27T19:27:16,618 writing requirements to /tmp/pip-pip-egg-info-pmic9wws/splam.egg-info/requires.txt 2024-09-27T19:27:16,619 writing top-level names to /tmp/pip-pip-egg-info-pmic9wws/splam.egg-info/top_level.txt 2024-09-27T19:27:16,620 writing manifest file '/tmp/pip-pip-egg-info-pmic9wws/splam.egg-info/SOURCES.txt' 2024-09-27T19:27:16,715 reading manifest file '/tmp/pip-pip-egg-info-pmic9wws/splam.egg-info/SOURCES.txt' 2024-09-27T19:27:16,716 reading manifest template 'MANIFEST.in' 2024-09-27T19:27:17,151 adding license file 'LICENSE' 2024-09-27T19:27:17,214 writing manifest file '/tmp/pip-pip-egg-info-pmic9wws/splam.egg-info/SOURCES.txt' 2024-09-27T19:27:17,327 Preparing metadata (setup.py): finished with status 'done' 2024-09-27T19:27:17,331 Source in /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d has version 1.0.11, which satisfies requirement splam==1.0.11 from https://files.pythonhosted.org/packages/bb/fb/2f3de06683e7885a6bde4e344cfa83eeb99f36585d10dd2dbbd645269442/splam-1.0.11.tar.gz 2024-09-27T19:27:17,332 Removed splam==1.0.11 from https://files.pythonhosted.org/packages/bb/fb/2f3de06683e7885a6bde4e344cfa83eeb99f36585d10dd2dbbd645269442/splam-1.0.11.tar.gz from build tracker '/tmp/pip-build-tracker-hmair09z' 2024-09-27T19:27:17,340 Created temporary directory: /tmp/pip-unpack-c1rm2iq8 2024-09-27T19:27:17,341 Created temporary directory: /tmp/pip-unpack-n850z_jm 2024-09-27T19:27:17,342 Building wheels for collected packages: splam 2024-09-27T19:27:17,346 Created temporary directory: /tmp/pip-wheel-xm36dl1x 2024-09-27T19:27:17,346 Building wheel for splam (setup.py): started 2024-09-27T19:27:17,347 Destination directory: /tmp/pip-wheel-xm36dl1x 2024-09-27T19:27:17,348 Running command python setup.py bdist_wheel 2024-09-27T19:27:18,371 running bdist_wheel 2024-09-27T19:27:18,481 running build 2024-09-27T19:27:18,482 running build_py 2024-09-27T19:27:18,512 creating build/lib.linux-armv7l-cpython-311/splam 2024-09-27T19:27:18,514 copying splam/chr_size.py -> build/lib.linux-armv7l-cpython-311/splam 2024-09-27T19:27:18,517 copying splam/parse.py -> build/lib.linux-armv7l-cpython-311/splam 2024-09-27T19:27:18,520 copying splam/splam.py -> build/lib.linux-armv7l-cpython-311/splam 2024-09-27T19:27:18,522 copying splam/config.py -> build/lib.linux-armv7l-cpython-311/splam 2024-09-27T19:27:18,524 copying splam/header.py -> build/lib.linux-armv7l-cpython-311/splam 2024-09-27T19:27:18,525 copying splam/main.py -> build/lib.linux-armv7l-cpython-311/splam 2024-09-27T19:27:18,528 copying splam/__init__.py -> build/lib.linux-armv7l-cpython-311/splam 2024-09-27T19:27:18,529 copying splam/extract_gff.py -> build/lib.linux-armv7l-cpython-311/splam 2024-09-27T19:27:18,532 copying splam/prediction.py -> build/lib.linux-armv7l-cpython-311/splam 2024-09-27T19:27:18,534 copying splam/clean_gff.py -> build/lib.linux-armv7l-cpython-311/splam 2024-09-27T19:27:18,537 running build_ext 2024-09-27T19:27:19,198 -- The C compiler identification is GNU 12.2.0 2024-09-27T19:27:19,571 -- The CXX compiler identification is GNU 12.2.0 2024-09-27T19:27:19,625 -- Detecting C compiler ABI info 2024-09-27T19:27:19,993 -- Detecting C compiler ABI info - done 2024-09-27T19:27:20,039 -- Check for working C compiler: /usr/bin/cc - skipped 2024-09-27T19:27:20,040 -- Detecting C compile features 2024-09-27T19:27:20,043 -- Detecting C compile features - done 2024-09-27T19:27:20,065 -- Detecting CXX compiler ABI info 2024-09-27T19:27:20,525 -- Detecting CXX compiler ABI info - done 2024-09-27T19:27:20,573 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2024-09-27T19:27:20,574 -- Detecting CXX compile features 2024-09-27T19:27:20,577 -- Detecting CXX compile features - done 2024-09-27T19:27:20,604 -- pybind11 v2.11.0 dev1 2024-09-27T19:27:20,685 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.6") 2024-09-27T19:27:20,767 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.11.so 2024-09-27T19:27:20,777 -- Performing Test HAS_FLTO 2024-09-27T19:27:21,651 -- Performing Test HAS_FLTO - Success 2024-09-27T19:27:21,708 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 2024-09-27T19:27:21,708 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/htslib 2024-09-27T19:27:21,709 LIBRARY_OUTPUT_DIRECTORY: 2024-09-27T19:27:21,798 EXAMPLE_VERSION_INFO: 1.0.11 2024-09-27T19:27:21,799 -- Configuring done 2024-09-27T19:27:21,909 -- Generating done 2024-09-27T19:27:21,921 -- Build files have been written to: /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/build/temp.linux-armv7l-cpython-311/splam_extract 2024-09-27T19:27:22,156 [ 2%] Creating directories for 'htslib' 2024-09-27T19:27:22,269 [ 5%] No download step for 'htslib' 2024-09-27T19:27:22,380 [ 8%] No update step for 'htslib' 2024-09-27T19:27:22,493 [ 11%] No patch step for 'htslib' 2024-09-27T19:27:22,623 [ 14%] Performing configure step for 'htslib' 2024-09-27T19:27:28,179 checking for gcc... gcc 2024-09-27T19:27:28,539 checking whether the C compiler works... yes 2024-09-27T19:27:28,540 checking for C compiler default output file name... a.out 2024-09-27T19:27:28,705 checking for suffix of executables... 2024-09-27T19:27:28,897 checking whether we are cross compiling... no 2024-09-27T19:27:28,979 checking for suffix of object files... o 2024-09-27T19:27:29,051 checking whether the compiler supports GNU C... yes 2024-09-27T19:27:29,124 checking whether gcc accepts -g... yes 2024-09-27T19:27:29,290 checking for gcc option to enable C11 features... none needed 2024-09-27T19:27:29,293 checking for ranlib... ranlib 2024-09-27T19:27:29,301 checking for grep that handles long lines and -e... /usr/bin/grep 2024-09-27T19:27:29,375 checking for C compiler warning flags... -Wall 2024-09-27T19:27:29,547 checking for gcc options needed to detect all undeclared functions... none needed 2024-09-27T19:27:29,635 checking for stdio.h... yes 2024-09-27T19:27:29,748 checking for stdlib.h... yes 2024-09-27T19:27:29,866 checking for string.h... yes 2024-09-27T19:27:30,022 checking for inttypes.h... yes 2024-09-27T19:27:30,141 checking for stdint.h... yes 2024-09-27T19:27:30,259 checking for strings.h... yes 2024-09-27T19:27:30,381 checking for sys/stat.h... yes 2024-09-27T19:27:30,502 checking for sys/types.h... yes 2024-09-27T19:27:30,637 checking for unistd.h... yes 2024-09-27T19:27:30,794 checking for sys/param.h... yes 2024-09-27T19:27:30,967 checking whether _XOPEN_SOURCE is declared... no 2024-09-27T19:27:31,141 checking C compiler flags needed for sse4.1... none 2024-09-27T19:27:31,314 checking C compiler flags needed for avx2... none 2024-09-27T19:27:31,513 checking C compiler flags needed for avx512f... none 2024-09-27T19:27:31,518 checking for pkg-config... /usr/bin/pkg-config 2024-09-27T19:27:31,524 checking pkg-config is at least version 0.9.0... yes 2024-09-27T19:27:31,527 checking for special C compiler options needed for large files... no 2024-09-27T19:27:31,703 checking for _FILE_OFFSET_BITS value needed for large files... 64 2024-09-27T19:27:31,715 checking shared library type for unknown-Linux... plain .so 2024-09-27T19:27:31,890 checking whether the linker supports versioned symbols... yes 2024-09-27T19:27:32,062 checking whether the compiler accepts -fvisibility=hidden... yes 2024-09-27T19:27:32,330 checking build system type... armv7l-unknown-linux-gnueabihf 2024-09-27T19:27:32,332 checking host system type... armv7l-unknown-linux-gnueabihf 2024-09-27T19:27:32,516 checking for getpagesize... yes 2024-09-27T19:27:32,849 checking for working mmap... yes 2024-09-27T19:27:33,043 checking for gmtime_r... yes 2024-09-27T19:27:33,245 checking for fsync... yes 2024-09-27T19:27:33,430 checking for drand48... yes 2024-09-27T19:27:33,632 checking for srand48_deterministic... no 2024-09-27T19:27:33,792 checking whether fdatasync is declared... yes 2024-09-27T19:27:34,003 checking for fdatasync... yes 2024-09-27T19:27:34,424 checking for library containing log... -lm 2024-09-27T19:27:34,529 checking for zlib.h... yes 2024-09-27T19:27:34,748 checking for inflate in -lz... yes 2024-09-27T19:27:34,934 checking for library containing recv... none required 2024-09-27T19:27:35,020 checking for bzlib.h... yes 2024-09-27T19:27:35,200 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2024-09-27T19:27:35,306 checking whether htscodecs files are present... yes 2024-09-27T19:27:35,307 configure: WARNING: GCS support not enabled: requires libcurl support 2024-09-27T19:27:35,307 configure: WARNING: S3 support not enabled: requires libcurl support 2024-09-27T19:27:35,515 checking for library containing regcomp... none required 2024-09-27T19:27:35,593 configure: creating ./config.status 2024-09-27T19:27:35,900 config.status: creating config.mk 2024-09-27T19:27:35,942 config.status: creating htslib.pc.tmp 2024-09-27T19:27:36,018 config.status: creating config.h 2024-09-27T19:27:36,050 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2024-09-27T19:27:36,213 [ 17%] Performing build step for 'htslib' 2024-09-27T19:27:39,963 fatal: not a git repository: /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/htslib/htscodecs/../.git/modules/htscodecs 2024-09-27T19:27:39,969 Updating htscodecs/htscodecs/version.h : #define HTSCODECS_VERSION_TEXT "" 2024-09-27T19:28:42,354 [ 20%] No install step for 'htslib' 2024-09-27T19:28:42,468 [ 22%] Completed 'htslib' 2024-09-27T19:28:42,620 [ 22%] Built target htslib 2024-09-27T19:28:42,719 [ 25%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2024-09-27T19:28:55,055 [ 28%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2024-09-27T19:28:59,658 [ 31%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2024-09-27T19:29:02,933 [ 34%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2024-09-27T19:29:07,697 [ 37%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2024-09-27T19:29:11,402 [ 40%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2024-09-27T19:29:13,481 [ 42%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2024-09-27T19:29:14,844 [ 45%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2024-09-27T19:29:15,860 [ 48%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2024-09-27T19:29:17,056 [ 51%] Linking CXX shared module /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so 2024-09-27T19:29:18,388 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2024-09-27T19:29:18,388 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2024-09-27T19:29:25,644 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GVec.hh: In member function ‘setCapacity’: 2024-09-27T19:29:25,645 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GVec.hh:107:24: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2024-09-27T19:29:25,646 107 | fArray=new OBJ[NewCapacity]; 2024-09-27T19:29:25,647 | ^ 2024-09-27T19:29:25,648 /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2024-09-27T19:29:25,649 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2024-09-27T19:29:25,649 | ^ 2024-09-27T19:29:29,034 In member function ‘Push’, 2024-09-27T19:29:29,034 inlined from ‘fgetline’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.cpp:530:11, 2024-09-27T19:29:29,035 inlined from ‘start’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/tmerge.cpp:360:28, 2024-09-27T19:29:29,035 inlined from ‘splam_extract’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_extract.cpp:184:37: 2024-09-27T19:29:29,036 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2024-09-27T19:29:29,036 564 | GDynArray_ADD(item); 2024-09-27T19:29:29,037 | ^ 2024-09-27T19:29:29,038 In function ‘GRealloc’, 2024-09-27T19:29:29,038 inlined from ‘Clear’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:633:6, 2024-09-27T19:29:29,039 inlined from ‘growTo’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:577:28, 2024-09-27T19:29:29,039 inlined from ‘Grow’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:544:12, 2024-09-27T19:29:29,040 inlined from ‘Push’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:564:6, 2024-09-27T19:29:29,041 inlined from ‘fgetline’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.cpp:530:11, 2024-09-27T19:29:29,041 inlined from ‘start’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/tmerge.cpp:360:28, 2024-09-27T19:29:29,042 inlined from ‘splam_extract’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_extract.cpp:184:37: 2024-09-27T19:29:29,043 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:280:21: note: at offset -1 into destination object of size 16 allocated by ‘realloc’ 2024-09-27T19:29:29,043 280 | void *p=realloc(*ptr,size); 2024-09-27T19:29:29,044 | ^ 2024-09-27T19:29:29,045 In member function ‘Push’, 2024-09-27T19:29:29,046 inlined from ‘fgetline’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.cpp:530:11, 2024-09-27T19:29:29,046 inlined from ‘start’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/tmerge.cpp:360:28, 2024-09-27T19:29:29,047 inlined from ‘splam_extract’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_extract.cpp:184:37: 2024-09-27T19:29:29,048 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2024-09-27T19:29:29,048 564 | GDynArray_ADD(item); 2024-09-27T19:29:29,049 | ^ 2024-09-27T19:29:29,050 In function ‘GRealloc’, 2024-09-27T19:29:29,050 inlined from ‘Clear’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:633:6, 2024-09-27T19:29:29,051 inlined from ‘growTo’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:577:28, 2024-09-27T19:29:29,051 inlined from ‘Grow’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:544:12, 2024-09-27T19:29:29,052 inlined from ‘Push’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:564:6, 2024-09-27T19:29:29,053 inlined from ‘fgetline’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.cpp:530:11, 2024-09-27T19:29:29,054 inlined from ‘start’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/tmerge.cpp:360:28, 2024-09-27T19:29:29,054 inlined from ‘splam_extract’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_extract.cpp:184:37: 2024-09-27T19:29:29,055 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:272:20: note: at offset -1 into destination object of size 16 allocated by ‘malloc’ 2024-09-27T19:29:29,055 272 | void *p=malloc(size); 2024-09-27T19:29:29,056 | ^ 2024-09-27T19:29:40,767 [ 51%] Built target splam_extract 2024-09-27T19:29:40,887 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2024-09-27T19:29:47,149 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2024-09-27T19:29:47,150 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,150 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-09-27T19:29:47,151 | ^~~~~~~~~~ 2024-09-27T19:29:47,152 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,152 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-09-27T19:29:47,153 | ^~~~~~ 2024-09-27T19:29:47,154 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,154 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-09-27T19:29:47,155 | ^~~~ 2024-09-27T19:29:47,156 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,156 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-09-27T19:29:47,157 | ^~~~ 2024-09-27T19:29:47,158 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,159 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-09-27T19:29:47,159 | ^~~~~~~~~~ 2024-09-27T19:29:47,160 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,160 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-09-27T19:29:47,161 | ^~~~~~ 2024-09-27T19:29:47,162 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,163 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-09-27T19:29:47,163 | ^~~~ 2024-09-27T19:29:47,164 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,164 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-09-27T19:29:47,165 | ^~~~ 2024-09-27T19:29:47,165 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,166 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T19:29:47,166 | ^~~~~~~~~~ 2024-09-27T19:29:47,167 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,168 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T19:29:47,168 | ^~~~~~~ 2024-09-27T19:29:47,169 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,170 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T19:29:47,171 | ^~~~ 2024-09-27T19:29:47,172 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,172 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T19:29:47,173 | ^~~~ 2024-09-27T19:29:47,174 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,174 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T19:29:47,175 | ^~~~ 2024-09-27T19:29:47,176 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,176 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T19:29:47,177 | ^~~~~~~~~~ 2024-09-27T19:29:47,178 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,179 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T19:29:47,179 | ^~~~~~~ 2024-09-27T19:29:47,180 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,180 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T19:29:47,181 | ^~~~ 2024-09-27T19:29:47,182 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,182 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T19:29:47,183 | ^~~~ 2024-09-27T19:29:47,184 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:29:47,184 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T19:29:47,185 | ^~~~ 2024-09-27T19:29:53,225 [ 57%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2024-09-27T19:30:02,821 [ 60%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2024-09-27T19:30:03,382 [ 62%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2024-09-27T19:30:03,967 [ 65%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2024-09-27T19:30:04,304 [ 68%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2024-09-27T19:30:06,464 [ 71%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2024-09-27T19:30:09,688 [ 74%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2024-09-27T19:30:14,277 [ 77%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2024-09-27T19:30:19,806 [ 80%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2024-09-27T19:30:24,709 [ 82%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2024-09-27T19:30:29,459 [ 85%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2024-09-27T19:30:33,121 [ 88%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2024-09-27T19:30:35,206 [ 91%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2024-09-27T19:30:36,555 [ 94%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2024-09-27T19:30:37,547 [ 97%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2024-09-27T19:30:38,767 [100%] Linking CXX shared module /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so 2024-09-27T19:30:39,737 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2024-09-27T19:30:39,737 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2024-09-27T19:31:01,068 [100%] Built target splam_clean 2024-09-27T19:31:01,429 -- The C compiler identification is GNU 12.2.0 2024-09-27T19:31:01,749 -- The CXX compiler identification is GNU 12.2.0 2024-09-27T19:31:01,802 -- Detecting C compiler ABI info 2024-09-27T19:31:02,171 -- Detecting C compiler ABI info - done 2024-09-27T19:31:02,246 -- Check for working C compiler: /usr/bin/cc - skipped 2024-09-27T19:31:02,248 -- Detecting C compile features 2024-09-27T19:31:02,253 -- Detecting C compile features - done 2024-09-27T19:31:02,275 -- Detecting CXX compiler ABI info 2024-09-27T19:31:02,705 -- Detecting CXX compiler ABI info - done 2024-09-27T19:31:02,753 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2024-09-27T19:31:02,754 -- Detecting CXX compile features 2024-09-27T19:31:02,757 -- Detecting CXX compile features - done 2024-09-27T19:31:02,783 -- pybind11 v2.11.0 dev1 2024-09-27T19:31:02,865 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.6") 2024-09-27T19:31:02,945 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.11.so 2024-09-27T19:31:02,955 -- Performing Test HAS_FLTO 2024-09-27T19:31:03,590 -- Performing Test HAS_FLTO - Success 2024-09-27T19:31:03,638 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 2024-09-27T19:31:03,639 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/htslib 2024-09-27T19:31:03,640 LIBRARY_OUTPUT_DIRECTORY: 2024-09-27T19:31:03,726 EXAMPLE_VERSION_INFO: 1.0.11 2024-09-27T19:31:03,727 -- Configuring done 2024-09-27T19:31:03,831 -- Generating done 2024-09-27T19:31:03,849 -- Build files have been written to: /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/build/temp.linux-armv7l-cpython-311/splam_clean 2024-09-27T19:31:04,092 [ 2%] Creating directories for 'htslib' 2024-09-27T19:31:04,206 [ 5%] No download step for 'htslib' 2024-09-27T19:31:04,317 [ 8%] No update step for 'htslib' 2024-09-27T19:31:04,430 [ 11%] No patch step for 'htslib' 2024-09-27T19:31:04,541 [ 14%] Performing configure step for 'htslib' 2024-09-27T19:31:08,444 checking for gcc... gcc 2024-09-27T19:31:08,716 checking whether the C compiler works... yes 2024-09-27T19:31:08,718 checking for C compiler default output file name... a.out 2024-09-27T19:31:08,889 checking for suffix of executables... 2024-09-27T19:31:09,123 checking whether we are cross compiling... no 2024-09-27T19:31:09,205 checking for suffix of object files... o 2024-09-27T19:31:09,277 checking whether the compiler supports GNU C... yes 2024-09-27T19:31:09,350 checking whether gcc accepts -g... yes 2024-09-27T19:31:09,513 checking for gcc option to enable C11 features... none needed 2024-09-27T19:31:09,515 checking for ranlib... ranlib 2024-09-27T19:31:09,523 checking for grep that handles long lines and -e... /usr/bin/grep 2024-09-27T19:31:09,600 checking for C compiler warning flags... -Wall 2024-09-27T19:31:09,766 checking for gcc options needed to detect all undeclared functions... none needed 2024-09-27T19:31:09,879 checking for stdio.h... yes 2024-09-27T19:31:09,987 checking for stdlib.h... yes 2024-09-27T19:31:10,103 checking for string.h... yes 2024-09-27T19:31:10,223 checking for inttypes.h... yes 2024-09-27T19:31:10,343 checking for stdint.h... yes 2024-09-27T19:31:10,462 checking for strings.h... yes 2024-09-27T19:31:10,593 checking for sys/stat.h... yes 2024-09-27T19:31:10,737 checking for sys/types.h... yes 2024-09-27T19:31:10,878 checking for unistd.h... yes 2024-09-27T19:31:11,031 checking for sys/param.h... yes 2024-09-27T19:31:11,205 checking whether _XOPEN_SOURCE is declared... no 2024-09-27T19:31:11,380 checking C compiler flags needed for sse4.1... none 2024-09-27T19:31:11,554 checking C compiler flags needed for avx2... none 2024-09-27T19:31:11,727 checking C compiler flags needed for avx512f... none 2024-09-27T19:31:11,731 checking for pkg-config... /usr/bin/pkg-config 2024-09-27T19:31:11,736 checking pkg-config is at least version 0.9.0... yes 2024-09-27T19:31:11,738 checking for special C compiler options needed for large files... no 2024-09-27T19:31:11,918 checking for _FILE_OFFSET_BITS value needed for large files... 64 2024-09-27T19:31:11,931 checking shared library type for unknown-Linux... plain .so 2024-09-27T19:31:12,112 checking whether the linker supports versioned symbols... yes 2024-09-27T19:31:12,304 checking whether the compiler accepts -fvisibility=hidden... yes 2024-09-27T19:31:12,536 checking build system type... armv7l-unknown-linux-gnueabihf 2024-09-27T19:31:12,537 checking host system type... armv7l-unknown-linux-gnueabihf 2024-09-27T19:31:12,721 checking for getpagesize... yes 2024-09-27T19:31:13,095 checking for working mmap... yes 2024-09-27T19:31:13,281 checking for gmtime_r... yes 2024-09-27T19:31:13,464 checking for fsync... yes 2024-09-27T19:31:13,645 checking for drand48... yes 2024-09-27T19:31:13,885 checking for srand48_deterministic... no 2024-09-27T19:31:14,046 checking whether fdatasync is declared... yes 2024-09-27T19:31:14,232 checking for fdatasync... yes 2024-09-27T19:31:14,663 checking for library containing log... -lm 2024-09-27T19:31:14,764 checking for zlib.h... yes 2024-09-27T19:31:14,948 checking for inflate in -lz... yes 2024-09-27T19:31:15,131 checking for library containing recv... none required 2024-09-27T19:31:15,216 checking for bzlib.h... yes 2024-09-27T19:31:15,428 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2024-09-27T19:31:15,526 checking whether htscodecs files are present... yes 2024-09-27T19:31:15,527 configure: WARNING: GCS support not enabled: requires libcurl support 2024-09-27T19:31:15,528 configure: WARNING: S3 support not enabled: requires libcurl support 2024-09-27T19:31:15,711 checking for library containing regcomp... none required 2024-09-27T19:31:15,777 configure: creating ./config.status 2024-09-27T19:31:16,064 config.status: creating config.mk 2024-09-27T19:31:16,105 config.status: creating htslib.pc.tmp 2024-09-27T19:31:16,159 config.status: creating config.h 2024-09-27T19:31:16,187 config.status: config.h is unchanged 2024-09-27T19:31:16,196 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2024-09-27T19:31:16,427 [ 17%] Performing build step for 'htslib' 2024-09-27T19:31:16,531 fatal: not a git repository: /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/htslib/htscodecs/../.git/modules/htscodecs 2024-09-27T19:31:16,711 [ 20%] No install step for 'htslib' 2024-09-27T19:31:16,835 [ 22%] Completed 'htslib' 2024-09-27T19:31:16,986 [ 22%] Built target htslib 2024-09-27T19:31:17,086 [ 25%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2024-09-27T19:31:29,268 [ 28%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2024-09-27T19:31:33,858 [ 31%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2024-09-27T19:31:37,101 [ 34%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2024-09-27T19:31:41,889 [ 37%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2024-09-27T19:31:45,557 [ 40%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2024-09-27T19:31:47,644 [ 42%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2024-09-27T19:31:49,034 [ 45%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2024-09-27T19:31:50,017 [ 48%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2024-09-27T19:31:51,215 [ 51%] Linking CXX shared module /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so 2024-09-27T19:31:52,513 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2024-09-27T19:31:52,513 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2024-09-27T19:31:59,756 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GVec.hh: In member function ‘setCapacity’: 2024-09-27T19:31:59,756 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GVec.hh:107:24: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2024-09-27T19:31:59,757 107 | fArray=new OBJ[NewCapacity]; 2024-09-27T19:31:59,757 | ^ 2024-09-27T19:31:59,758 /usr/include/c++/12/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2024-09-27T19:31:59,758 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2024-09-27T19:31:59,759 | ^ 2024-09-27T19:32:03,141 In member function ‘Push’, 2024-09-27T19:32:03,142 inlined from ‘fgetline’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.cpp:530:11, 2024-09-27T19:32:03,143 inlined from ‘start’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/tmerge.cpp:360:28, 2024-09-27T19:32:03,143 inlined from ‘splam_extract’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_extract.cpp:184:37: 2024-09-27T19:32:03,144 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2024-09-27T19:32:03,145 564 | GDynArray_ADD(item); 2024-09-27T19:32:03,146 | ^ 2024-09-27T19:32:03,147 In function ‘GRealloc’, 2024-09-27T19:32:03,147 inlined from ‘Clear’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:633:6, 2024-09-27T19:32:03,148 inlined from ‘growTo’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:577:28, 2024-09-27T19:32:03,149 inlined from ‘Grow’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:544:12, 2024-09-27T19:32:03,150 inlined from ‘Push’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:564:6, 2024-09-27T19:32:03,150 inlined from ‘fgetline’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.cpp:530:11, 2024-09-27T19:32:03,151 inlined from ‘start’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/tmerge.cpp:360:28, 2024-09-27T19:32:03,151 inlined from ‘splam_extract’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_extract.cpp:184:37: 2024-09-27T19:32:03,152 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:280:21: note: at offset -1 into destination object of size 16 allocated by ‘realloc’ 2024-09-27T19:32:03,152 280 | void *p=realloc(*ptr,size); 2024-09-27T19:32:03,153 | ^ 2024-09-27T19:32:03,154 In member function ‘Push’, 2024-09-27T19:32:03,154 inlined from ‘fgetline’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.cpp:530:11, 2024-09-27T19:32:03,155 inlined from ‘start’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/tmerge.cpp:360:28, 2024-09-27T19:32:03,155 inlined from ‘splam_extract’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_extract.cpp:184:37: 2024-09-27T19:32:03,156 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:564:9: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2024-09-27T19:32:03,156 564 | GDynArray_ADD(item); 2024-09-27T19:32:03,157 | ^ 2024-09-27T19:32:03,157 In function ‘GRealloc’, 2024-09-27T19:32:03,158 inlined from ‘Clear’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:633:6, 2024-09-27T19:32:03,158 inlined from ‘growTo’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:577:28, 2024-09-27T19:32:03,159 inlined from ‘Grow’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:544:12, 2024-09-27T19:32:03,159 inlined from ‘Push’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:564:6, 2024-09-27T19:32:03,160 inlined from ‘fgetline’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.cpp:530:11, 2024-09-27T19:32:03,160 inlined from ‘start’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/tmerge.cpp:360:28, 2024-09-27T19:32:03,161 inlined from ‘splam_extract’ at /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_extract.cpp:184:37: 2024-09-27T19:32:03,162 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/include/gclib/GBase.h:272:20: note: at offset -1 into destination object of size 16 allocated by ‘malloc’ 2024-09-27T19:32:03,162 272 | void *p=malloc(size); 2024-09-27T19:32:03,163 | ^ 2024-09-27T19:32:14,892 [ 51%] Built target splam_extract 2024-09-27T19:32:14,994 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2024-09-27T19:32:21,219 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2024-09-27T19:32:21,219 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,220 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-09-27T19:32:21,221 | ^~~~~~~~~~ 2024-09-27T19:32:21,221 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,222 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-09-27T19:32:21,223 | ^~~~~~ 2024-09-27T19:32:21,223 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,224 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-09-27T19:32:21,224 | ^~~~ 2024-09-27T19:32:21,225 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,226 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-09-27T19:32:21,227 | ^~~~ 2024-09-27T19:32:21,227 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,228 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-09-27T19:32:21,228 | ^~~~~~~~~~ 2024-09-27T19:32:21,229 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,230 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-09-27T19:32:21,230 | ^~~~~~ 2024-09-27T19:32:21,231 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,231 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-09-27T19:32:21,232 | ^~~~ 2024-09-27T19:32:21,233 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,234 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-09-27T19:32:21,234 | ^~~~ 2024-09-27T19:32:21,235 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,236 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T19:32:21,237 | ^~~~~~~~~~ 2024-09-27T19:32:21,237 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,238 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T19:32:21,239 | ^~~~~~~ 2024-09-27T19:32:21,239 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,240 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T19:32:21,241 | ^~~~ 2024-09-27T19:32:21,242 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,243 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T19:32:21,243 | ^~~~ 2024-09-27T19:32:21,244 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,244 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T19:32:21,245 | ^~~~ 2024-09-27T19:32:21,246 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,246 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T19:32:21,247 | ^~~~~~~~~~ 2024-09-27T19:32:21,247 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,248 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T19:32:21,249 | ^~~~~~~ 2024-09-27T19:32:21,250 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,251 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T19:32:21,251 | ^~~~ 2024-09-27T19:32:21,252 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,253 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T19:32:21,254 | ^~~~ 2024-09-27T19:32:21,254 /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T19:32:21,255 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T19:32:21,256 | ^~~~ 2024-09-27T19:32:27,279 [ 57%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2024-09-27T19:32:36,831 [ 60%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2024-09-27T19:32:37,395 [ 62%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2024-09-27T19:32:37,974 [ 65%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2024-09-27T19:32:38,310 [ 68%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2024-09-27T19:32:40,463 [ 71%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2024-09-27T19:32:43,700 [ 74%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2024-09-27T19:32:48,324 [ 77%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2024-09-27T19:32:53,672 [ 80%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2024-09-27T19:32:58,495 [ 82%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2024-09-27T19:33:03,243 [ 85%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2024-09-27T19:33:06,907 [ 88%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2024-09-27T19:33:09,039 [ 91%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2024-09-27T19:33:10,402 [ 94%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2024-09-27T19:33:11,392 [ 97%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2024-09-27T19:33:12,579 [100%] Linking CXX shared module /tmp/pip-wheel-7wseiek2/splam_7cf65e0966cd4d2e90de29cc26a1076d/build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so 2024-09-27T19:33:13,556 lto-wrapper: warning: using serial compilation of 4 LTRANS jobs 2024-09-27T19:33:13,557 lto-wrapper: note: see the ‘-flto’ option documentation for more information 2024-09-27T19:33:34,959 [100%] Built target splam_clean 2024-09-27T19:33:35,056 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-09-27T19:33:35,056 !! 2024-09-27T19:33:35,058 ******************************************************************************** 2024-09-27T19:33:35,058 Please avoid running ``setup.py`` directly. 2024-09-27T19:33:35,059 Instead, use pypa/build, pypa/installer or other 2024-09-27T19:33:35,059 standards-based tools. 2024-09-27T19:33:35,061 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-09-27T19:33:35,061 ******************************************************************************** 2024-09-27T19:33:35,063 !! 2024-09-27T19:33:35,063 self.initialize_options() 2024-09-27T19:33:35,084 installing to build/bdist.linux-armv7l/wheel 2024-09-27T19:33:35,084 running install 2024-09-27T19:33:35,109 running install_lib 2024-09-27T19:33:35,136 creating build/bdist.linux-armv7l/wheel 2024-09-27T19:33:35,138 copying build/lib.linux-armv7l-cpython-311/splam_extract.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2024-09-27T19:33:35,158 creating build/bdist.linux-armv7l/wheel/splam 2024-09-27T19:33:35,159 copying build/lib.linux-armv7l-cpython-311/splam/chr_size.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T19:33:35,162 copying build/lib.linux-armv7l-cpython-311/splam/parse.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T19:33:35,164 copying build/lib.linux-armv7l-cpython-311/splam/splam.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T19:33:35,166 copying build/lib.linux-armv7l-cpython-311/splam/config.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T19:33:35,168 copying build/lib.linux-armv7l-cpython-311/splam/header.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T19:33:35,170 copying build/lib.linux-armv7l-cpython-311/splam/main.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T19:33:35,172 copying build/lib.linux-armv7l-cpython-311/splam/__init__.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T19:33:35,174 copying build/lib.linux-armv7l-cpython-311/splam/extract_gff.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T19:33:35,176 copying build/lib.linux-armv7l-cpython-311/splam/prediction.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T19:33:35,178 copying build/lib.linux-armv7l-cpython-311/splam/clean_gff.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T19:33:35,180 copying build/lib.linux-armv7l-cpython-311/splam_clean.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2024-09-27T19:33:35,205 running install_egg_info 2024-09-27T19:33:35,238 running egg_info 2024-09-27T19:33:35,265 writing splam.egg-info/PKG-INFO 2024-09-27T19:33:35,269 writing dependency_links to splam.egg-info/dependency_links.txt 2024-09-27T19:33:35,271 writing entry points to splam.egg-info/entry_points.txt 2024-09-27T19:33:35,272 writing requirements to splam.egg-info/requires.txt 2024-09-27T19:33:35,274 writing top-level names to splam.egg-info/top_level.txt 2024-09-27T19:33:35,305 reading manifest file 'splam.egg-info/SOURCES.txt' 2024-09-27T19:33:35,682 reading manifest template 'MANIFEST.in' 2024-09-27T19:33:36,091 adding license file 'LICENSE' 2024-09-27T19:33:36,187 writing manifest file 'splam.egg-info/SOURCES.txt' 2024-09-27T19:33:36,191 Copying splam.egg-info to build/bdist.linux-armv7l/wheel/./splam-1.0.11-py3.11.egg-info 2024-09-27T19:33:36,205 running install_scripts 2024-09-27T19:33:36,262 creating build/bdist.linux-armv7l/wheel/splam-1.0.11.dist-info/WHEEL 2024-09-27T19:33:36,264 creating '/tmp/pip-wheel-xm36dl1x/splam-1.0.11-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-09-27T19:33:36,546 adding 'splam_clean.cpython-311-arm-linux-gnueabihf.so' 2024-09-27T19:33:36,807 adding 'splam_extract.cpython-311-arm-linux-gnueabihf.so' 2024-09-27T19:33:36,816 adding 'splam/__init__.py' 2024-09-27T19:33:36,822 adding 'splam/chr_size.py' 2024-09-27T19:33:36,823 adding 'splam/clean_gff.py' 2024-09-27T19:33:36,824 adding 'splam/config.py' 2024-09-27T19:33:36,826 adding 'splam/extract_gff.py' 2024-09-27T19:33:36,827 adding 'splam/header.py' 2024-09-27T19:33:36,829 adding 'splam/main.py' 2024-09-27T19:33:36,831 adding 'splam/parse.py' 2024-09-27T19:33:36,833 adding 'splam/prediction.py' 2024-09-27T19:33:36,834 adding 'splam/splam.py' 2024-09-27T19:33:36,836 adding 'splam-1.0.11.dist-info/LICENSE' 2024-09-27T19:33:36,838 adding 'splam-1.0.11.dist-info/METADATA' 2024-09-27T19:33:36,839 adding 'splam-1.0.11.dist-info/WHEEL' 2024-09-27T19:33:36,840 adding 'splam-1.0.11.dist-info/entry_points.txt' 2024-09-27T19:33:36,841 adding 'splam-1.0.11.dist-info/top_level.txt' 2024-09-27T19:33:36,842 adding 'splam-1.0.11.dist-info/RECORD' 2024-09-27T19:33:36,853 removing build/bdist.linux-armv7l/wheel 2024-09-27T19:33:36,974 Building wheel for splam (setup.py): finished with status 'done' 2024-09-27T19:33:36,986 Created wheel for splam: filename=splam-1.0.11-cp311-cp311-linux_armv7l.whl size=927194 sha256=7fdf0f61bcd27842e7979f374f35bb47dc15043a5c035d4e67d32dd10ff67cdd 2024-09-27T19:33:36,988 Stored in directory: /tmp/pip-ephem-wheel-cache-myf2mj4i/wheels/4a/1b/8d/53f4f3cf2315344da44337e5fc9a886e1fc7ce0fd4776ad83b 2024-09-27T19:33:37,000 Successfully built splam 2024-09-27T19:33:37,025 Removed build tracker: '/tmp/pip-build-tracker-hmair09z'