2024-09-27T20:22:33,166 Disabling truststore because Python version isn't 3.10+ 2024-09-27T20:22:33,636 Created temporary directory: /tmp/pip-build-tracker-quny6716 2024-09-27T20:22:33,637 Initialized build tracking at /tmp/pip-build-tracker-quny6716 2024-09-27T20:22:33,637 Created build tracker: /tmp/pip-build-tracker-quny6716 2024-09-27T20:22:33,637 Entered build tracker: /tmp/pip-build-tracker-quny6716 2024-09-27T20:22:33,638 Created temporary directory: /tmp/pip-wheel-1xkjtqps 2024-09-27T20:22:33,643 Created temporary directory: /tmp/pip-ephem-wheel-cache-iqs71hq7 2024-09-27T20:22:33,685 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-09-27T20:22:33,688 2 location(s) to search for versions of splam: 2024-09-27T20:22:33,688 * https://pypi.org/simple/splam/ 2024-09-27T20:22:33,688 * https://www.piwheels.org/simple/splam/ 2024-09-27T20:22:33,689 Fetching project page and analyzing links: https://pypi.org/simple/splam/ 2024-09-27T20:22:33,689 Getting page https://pypi.org/simple/splam/ 2024-09-27T20:22:33,691 Found index url https://pypi.org/simple/ 2024-09-27T20:22:33,787 Fetched page https://pypi.org/simple/splam/ as application/vnd.pypi.simple.v1+json 2024-09-27T20:22:33,797 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/57/2a/d68f86c46b3152c9072975cb1c8b3f2345e0f71cea763c0635ca8c5e0261/splam-0.2.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,798 Found link https://files.pythonhosted.org/packages/ba/e8/4cf0f802bf26fd6587829e3688109caef6d26e13d19ce003ac876212da15/splam-0.2.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.9 2024-09-27T20:22:33,799 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f0/97/c31f00ac8a786213c4a50dd993cd04e61af08766e9559f244fb9c3929178/splam-0.2.10-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,799 Found link https://files.pythonhosted.org/packages/72/d1/671663c98d0cfca3218b880633390493fcebf9972175a7c4d2752259f2ea/splam-0.2.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.10 2024-09-27T20:22:33,799 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/ad/36/84239a43f206dfbfe07c6e6f76ef8c54235439210640aeacc8cb20e24c2e/splam-0.2.11-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,800 Found link https://files.pythonhosted.org/packages/c7/b3/96a175c203358d735694d7d5fd9261ef8683af968e14e473e823d159cee1/splam-0.2.11.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.11 2024-09-27T20:22:33,800 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/a5/f5/e15307ccb65ec9c225b7f1af65ee2c8880ba8eb049d386f4c9da459b2e1e/splam-0.2.12-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,800 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ba/88/6cac004352d4aa92aabdfd31f9b96919f8044db486185d3fd3c924583bc8/splam-0.2.12-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,801 Found link https://files.pythonhosted.org/packages/32/fa/a9795e9df88e8ea6c6788ae171702d5f9d8ce2c3472408ab0784f08a7b91/splam-0.2.12.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.12 2024-09-27T20:22:33,801 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/59/88/fefee12f8e44d6879a0970d37b42fc4dc54010f78b1ee91f6db366c1f125/splam-0.2.13-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,801 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/64/13/d601e5e99b31891d95bc0a6201367dab38f12faaadcb6aedbee7725dca71/splam-0.2.13-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,802 Found link https://files.pythonhosted.org/packages/cf/fb/2e5425fcdb2e5fd7ff963b174b1582816154fd0373bbc96edf4e851d272d/splam-0.2.13.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.13 2024-09-27T20:22:33,802 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/da/65/a129eabb1d673da72f1d7dfd3495c01c89da78569b7f2dba2c746a0c0f29/splam-0.2.14-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,802 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/79/2fdaa68664126c8c71bac526b41e1e35e4195879170c8129a8d482f3ae7b/splam-0.2.14-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,803 Found link https://files.pythonhosted.org/packages/9b/3f/d7dd2411528494ed5062665c3b5d5d7d8422fd11fa181d5fc01ea67d7dbf/splam-0.2.14.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.14 2024-09-27T20:22:33,803 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f4/9a/e7d1f5f16d77888ac5d0935e180fa2210e875ff487909519d6871e1301da/splam-0.2.15-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,803 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/40/b6/eda61824794c736e52c09353dfbbd70eea4d0f0ab31896f3688d269ab64b/splam-0.2.15-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,804 Found link https://files.pythonhosted.org/packages/29/d0/5e9ef93e49636308cb56b70a06c8932321cb60a4aae678d8bb1d213b52b5/splam-0.2.15.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.15 2024-09-27T20:22:33,804 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e5/17/caa4b05a6370f2d197ec174fe1968f63acc357db5923efca0860b3a5e141/splam-0.2.16-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,804 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fe/a5/d90a02293e34acf5515a8f435ae90afeb823336d6232a7bedf01436a00f9/splam-0.2.17-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,804 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ef/af/7db5183d8c36a250bb4547c58610624b4d1067ea0eb119addc8986ce6ec1/splam-0.2.17-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,805 Found link https://files.pythonhosted.org/packages/26/3a/0e89dd56f9617853061d7c4ed6a220a414a01bba9f0005e54da52a1ad22e/splam-0.2.17.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.17 2024-09-27T20:22:33,805 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/bd/50/ae02dcd9e7c53df59acc9ad83ac389a886e55254cd6953614d43f0eaac60/splam-0.3.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,805 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/78/0b/8b0b45b16922007f88c9b81357cde8b84f9ea45327104b00724024e722ec/splam-0.3.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,806 Found link https://files.pythonhosted.org/packages/e5/c7/4bf13e849aefc7cfdd94f142e6267e4937c61d7fb9fbfe1119953f6a5e72/splam-0.3.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.3.0 2024-09-27T20:22:33,806 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/55/d8079e937d1f568ac9358237871b9d4d6d28abf1e8e8ec2b8073db7b166a/splam-0.3.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,806 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6d/9f/5e7c396bd04da9866f89f51574bd3fec1e691b279116e4d4de92b75b6538/splam-1.0.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,807 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/56/ae/c9e443ec09db88b2b2aaa18ebc6b12751b321d731ce21964ee188067bb0f/splam-1.0.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,807 Found link https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.0 2024-09-27T20:22:33,807 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/43/45/27c64605655d3127bf6155bc060f98fb565e631553e4f0e0a53d3922ebf3/splam-1.0.1-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,808 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/4d/0b5427df4d5d74ba5a98e28805b45fee4b15d2cad1e9aa91069306c29da7/splam-1.0.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,808 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/da/e1/11ee65eb50a2f628f92249d84cd72eddbc1386afbc82c7410fceb627d995/splam-1.0.1-py3.9-linux-x86_64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,808 Found link https://files.pythonhosted.org/packages/ad/3c/5a2fcc44ca9afa6bc1cb4fe6a30ba6495f9c1359c6b610536cb6c7998ca1/splam-1.0.1.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.1 2024-09-27T20:22:33,808 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6a/e7/e7827b0d637f018ef8d18ea969985ce37ffa520fd1bf6d0e8d43d72b749e/splam-1.0.2-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,809 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f2/ba/94da0985b6db88ba663b4e56a395d74d04283a79d0fdf476763251f5679f/splam-1.0.2-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,809 Found link https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.2 2024-09-27T20:22:33,809 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/30/c9/23c10c8ee217996cc58e6f16ffc732657d1cb3011f7cbc41ebb51927bbbb/splam-1.0.3-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,810 Found link https://files.pythonhosted.org/packages/b3/80/1ff08f5e516c2ce233a75e61e8ce3dacc34b00bd2cae4fae0d01b0d758e9/splam-1.0.3.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.3 2024-09-27T20:22:33,810 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/70/bd/3aacba5a589a5a8d4688781f1376a822b1df05526355738a85f10a6f0c86/splam-1.0.4-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,811 Found link https://files.pythonhosted.org/packages/b3/ef/1c49f24a396880a7ac6773041c067d1418ca533df5018de37f1fb49f512a/splam-1.0.4.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.4 2024-09-27T20:22:33,811 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/54/7e/ce14252ed5cbc26ad69ffe8ec6909d91f2bed9f97749fb5ba0f43a935479/splam-1.0.5-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,811 Found link https://files.pythonhosted.org/packages/5f/dd/ac054961585d4e5d71c889e8840dc096a847ac38b04295f38dbe524718e5/splam-1.0.5.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.5 2024-09-27T20:22:33,812 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f7/1e/02d35d67ba3f32f629f40824705e8ef82b6a80914fef3ffa59bcea67c965/splam-1.0.6-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,812 Found link https://files.pythonhosted.org/packages/b2/7d/e8f8b51f071b0bc4e2a1a0cc31db50c9acecb68271cd5bd5e113c7442fed/splam-1.0.6.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.6 2024-09-27T20:22:33,813 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/1d/57/3fbf056633d3332ab938f761553161346599e27c5f5c66f605c08b4fb2b3/splam-1.0.7-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,813 Found link https://files.pythonhosted.org/packages/a5/b6/ffa6c7c753ce7d9989d0e3adcb5310ecf29429dce73ffe51f2b63434c9fc/splam-1.0.7.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.7 2024-09-27T20:22:33,813 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/35/fa/76bf21536e4f60a1caae0132889ab74457d9c75a9476c3d0ec7b578870af/splam-1.0.8-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,814 Found link https://files.pythonhosted.org/packages/a5/ad/6d3495d79895726b6df06f3cd667006e5316fa3235e6919b841057f6e666/splam-1.0.8.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.8 2024-09-27T20:22:33,814 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fc/24/c13538db2c354993494537d33e4138e39d65e83f947f55d6f9d599e12a63/splam-1.0.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,815 Found link https://files.pythonhosted.org/packages/4d/2c/303bafdffb18df8357ea5c7f2bc00f9e4afd9667b9f10b411091c3adc293/splam-1.0.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.9 2024-09-27T20:22:33,815 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/eb/97/6d184eef2d7511274e92d1be778a573a0c3148510a51b031cb2cf646dd8c/splam-1.0.10-cp38-cp38-macosx_14_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,815 Found link https://files.pythonhosted.org/packages/53/d4/4f1f5ed4879f56c7a5ede7cd1f5a3bd555e963abb61c148a8ebb648e5098/splam-1.0.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.10 2024-09-27T20:22:33,816 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/c2/5f/37e24ec88bf57ccda8b24cf6ec8a440dc74d6aeb2863d06466951e345c5e/splam-1.0.11-cp38-cp38-macosx_14_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,816 Found link https://files.pythonhosted.org/packages/bb/fb/2f3de06683e7885a6bde4e344cfa83eeb99f36585d10dd2dbbd645269442/splam-1.0.11.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.11 2024-09-27T20:22:33,817 Fetching project page and analyzing links: https://www.piwheels.org/simple/splam/ 2024-09-27T20:22:33,817 Getting page https://www.piwheels.org/simple/splam/ 2024-09-27T20:22:33,818 Found index url https://www.piwheels.org/simple/ 2024-09-27T20:22:33,862 Fetched page https://www.piwheels.org/simple/splam/ as text/html 2024-09-27T20:22:33,882 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.11-cp311-cp311-linux_armv6l.whl#sha256=7fdf0f61bcd27842e7979f374f35bb47dc15043a5c035d4e67d32dd10ff67cdd (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,882 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.11-cp311-cp311-linux_armv7l.whl#sha256=7fdf0f61bcd27842e7979f374f35bb47dc15043a5c035d4e67d32dd10ff67cdd (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,882 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.10-cp311-cp311-linux_armv6l.whl#sha256=f8fd14791d45e9f68a5167336d4dfc6230be3e3b3b4b1788d47b97c9545105ec (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,882 Skipping link: No binaries permitted for splam: 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https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv6l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,893 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv7l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,893 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv6l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,893 Skipping link: No binaries permitted for splam: 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https://www.piwheels.org/simple/splam/splam-0.2.13-cp311-cp311-linux_armv6l.whl#sha256=3358137f046748462107e305dd9d042c880d1ac8e4b165f0ba3872db24bc2175 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,894 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp311-cp311-linux_armv7l.whl#sha256=3358137f046748462107e305dd9d042c880d1ac8e4b165f0ba3872db24bc2175 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,894 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv6l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,894 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv7l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,894 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv6l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,894 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv7l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,895 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv6l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,895 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv7l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,895 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv6l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,895 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv7l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-09-27T20:22:33,895 Skipping link: not a file: https://www.piwheels.org/simple/splam/ 2024-09-27T20:22:33,896 Skipping link: not a file: https://pypi.org/simple/splam/ 2024-09-27T20:22:33,913 Given no hashes to check 1 links for project 'splam': discarding no candidates 2024-09-27T20:22:33,915 Collecting splam==1.0.11 2024-09-27T20:22:33,917 Created temporary directory: /tmp/pip-unpack-m3_vgamk 2024-09-27T20:22:33,935 Downloading splam-1.0.11.tar.gz (18.6 MB) 2024-09-27T20:22:41,249 Added splam==1.0.11 from https://files.pythonhosted.org/packages/bb/fb/2f3de06683e7885a6bde4e344cfa83eeb99f36585d10dd2dbbd645269442/splam-1.0.11.tar.gz to build tracker '/tmp/pip-build-tracker-quny6716' 2024-09-27T20:22:41,251 Running setup.py (path:/tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/setup.py) egg_info for package splam 2024-09-27T20:22:41,251 Created temporary directory: /tmp/pip-pip-egg-info-53re8v_a 2024-09-27T20:22:41,252 Preparing metadata (setup.py): started 2024-09-27T20:22:41,253 Running command python setup.py egg_info 2024-09-27T20:22:42,379 running egg_info 2024-09-27T20:22:42,381 creating /tmp/pip-pip-egg-info-53re8v_a/splam.egg-info 2024-09-27T20:22:42,409 writing /tmp/pip-pip-egg-info-53re8v_a/splam.egg-info/PKG-INFO 2024-09-27T20:22:42,414 writing dependency_links to /tmp/pip-pip-egg-info-53re8v_a/splam.egg-info/dependency_links.txt 2024-09-27T20:22:42,415 writing entry points to /tmp/pip-pip-egg-info-53re8v_a/splam.egg-info/entry_points.txt 2024-09-27T20:22:42,417 writing requirements to /tmp/pip-pip-egg-info-53re8v_a/splam.egg-info/requires.txt 2024-09-27T20:22:42,418 writing top-level names to /tmp/pip-pip-egg-info-53re8v_a/splam.egg-info/top_level.txt 2024-09-27T20:22:42,419 writing manifest file '/tmp/pip-pip-egg-info-53re8v_a/splam.egg-info/SOURCES.txt' 2024-09-27T20:22:42,503 reading manifest file '/tmp/pip-pip-egg-info-53re8v_a/splam.egg-info/SOURCES.txt' 2024-09-27T20:22:42,504 reading manifest template 'MANIFEST.in' 2024-09-27T20:22:42,990 adding license file 'LICENSE' 2024-09-27T20:22:43,075 writing manifest file '/tmp/pip-pip-egg-info-53re8v_a/splam.egg-info/SOURCES.txt' 2024-09-27T20:22:43,167 Preparing metadata (setup.py): finished with status 'done' 2024-09-27T20:22:43,173 Source in /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250 has version 1.0.11, which satisfies requirement splam==1.0.11 from https://files.pythonhosted.org/packages/bb/fb/2f3de06683e7885a6bde4e344cfa83eeb99f36585d10dd2dbbd645269442/splam-1.0.11.tar.gz 2024-09-27T20:22:43,173 Removed splam==1.0.11 from https://files.pythonhosted.org/packages/bb/fb/2f3de06683e7885a6bde4e344cfa83eeb99f36585d10dd2dbbd645269442/splam-1.0.11.tar.gz from build tracker '/tmp/pip-build-tracker-quny6716' 2024-09-27T20:22:43,183 Created temporary directory: /tmp/pip-unpack-ina0vkyb 2024-09-27T20:22:43,184 Created temporary directory: /tmp/pip-unpack-zq27j4td 2024-09-27T20:22:43,184 Building wheels for collected packages: splam 2024-09-27T20:22:43,188 Created temporary directory: /tmp/pip-wheel-bxl9z5wx 2024-09-27T20:22:43,188 Building wheel for splam (setup.py): started 2024-09-27T20:22:43,189 Destination directory: /tmp/pip-wheel-bxl9z5wx 2024-09-27T20:22:43,189 Running command python setup.py bdist_wheel 2024-09-27T20:22:44,208 running bdist_wheel 2024-09-27T20:22:44,528 running build 2024-09-27T20:22:44,528 running build_py 2024-09-27T20:22:44,557 creating build/lib.linux-armv7l-cpython-39/splam 2024-09-27T20:22:44,559 copying splam/parse.py -> build/lib.linux-armv7l-cpython-39/splam 2024-09-27T20:22:44,562 copying splam/splam.py -> build/lib.linux-armv7l-cpython-39/splam 2024-09-27T20:22:44,564 copying splam/header.py -> build/lib.linux-armv7l-cpython-39/splam 2024-09-27T20:22:44,566 copying splam/chr_size.py -> build/lib.linux-armv7l-cpython-39/splam 2024-09-27T20:22:44,568 copying splam/main.py -> build/lib.linux-armv7l-cpython-39/splam 2024-09-27T20:22:44,571 copying splam/__init__.py -> build/lib.linux-armv7l-cpython-39/splam 2024-09-27T20:22:44,572 copying splam/prediction.py -> build/lib.linux-armv7l-cpython-39/splam 2024-09-27T20:22:44,575 copying splam/extract_gff.py -> build/lib.linux-armv7l-cpython-39/splam 2024-09-27T20:22:44,577 copying splam/clean_gff.py -> build/lib.linux-armv7l-cpython-39/splam 2024-09-27T20:22:44,579 copying splam/config.py -> build/lib.linux-armv7l-cpython-39/splam 2024-09-27T20:22:44,582 running build_ext 2024-09-27T20:22:44,929 -- The C compiler identification is GNU 10.2.1 2024-09-27T20:22:45,297 -- The CXX compiler identification is GNU 10.2.1 2024-09-27T20:22:45,342 -- Detecting C compiler ABI info 2024-09-27T20:22:45,680 -- Detecting C compiler ABI info - done 2024-09-27T20:22:45,736 -- Check for working C compiler: /usr/bin/cc - skipped 2024-09-27T20:22:45,737 -- Detecting C compile features 2024-09-27T20:22:45,740 -- Detecting C compile features - done 2024-09-27T20:22:45,763 -- Detecting CXX compiler ABI info 2024-09-27T20:22:46,157 -- Detecting CXX compiler ABI info - done 2024-09-27T20:22:46,216 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2024-09-27T20:22:46,217 -- Detecting CXX compile features 2024-09-27T20:22:46,220 -- Detecting CXX compile features - done 2024-09-27T20:22:46,247 -- pybind11 v2.11.0 dev1 2024-09-27T20:22:46,309 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3.6") 2024-09-27T20:22:46,830 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so 2024-09-27T20:22:46,838 -- Performing Test HAS_FLTO 2024-09-27T20:22:47,443 -- Performing Test HAS_FLTO - Success 2024-09-27T20:22:47,492 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 2024-09-27T20:22:47,493 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/include/htslib 2024-09-27T20:22:47,493 LIBRARY_OUTPUT_DIRECTORY: 2024-09-27T20:22:47,626 EXAMPLE_VERSION_INFO: 1.0.11 2024-09-27T20:22:47,627 -- Configuring done 2024-09-27T20:22:47,707 -- Generating done 2024-09-27T20:22:47,720 -- Build files have been written to: /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/build/temp.linux-armv7l-cpython-39/splam_extract 2024-09-27T20:22:47,919 Scanning dependencies of target htslib 2024-09-27T20:22:47,967 [ 2%] Creating directories for 'htslib' 2024-09-27T20:22:48,368 [ 5%] No download step for 'htslib' 2024-09-27T20:22:48,525 [ 8%] No update step for 'htslib' 2024-09-27T20:22:48,675 [ 11%] No patch step for 'htslib' 2024-09-27T20:22:48,788 [ 14%] Performing configure step for 'htslib' 2024-09-27T20:22:54,349 checking for gcc... gcc 2024-09-27T20:22:54,615 checking whether the C compiler works... yes 2024-09-27T20:22:54,617 checking for C compiler default output file name... a.out 2024-09-27T20:22:54,790 checking for suffix of executables... 2024-09-27T20:22:54,978 checking whether we are cross compiling... no 2024-09-27T20:22:55,062 checking for suffix of object files... o 2024-09-27T20:22:55,138 checking whether we are using the GNU C compiler... yes 2024-09-27T20:22:55,216 checking whether gcc accepts -g... yes 2024-09-27T20:22:55,555 checking for gcc option to accept ISO C89... none needed 2024-09-27T20:22:55,561 checking for ranlib... ranlib 2024-09-27T20:22:55,579 checking for grep that handles long lines and -e... /usr/bin/grep 2024-09-27T20:22:55,707 checking for C compiler warning flags... -Wall 2024-09-27T20:22:55,818 checking how to run the C preprocessor... gcc -E 2024-09-27T20:22:55,926 checking for egrep... /usr/bin/grep -E 2024-09-27T20:22:56,378 checking for ANSI C header files... yes 2024-09-27T20:22:56,530 checking for sys/types.h... yes 2024-09-27T20:22:56,664 checking for sys/stat.h... yes 2024-09-27T20:22:56,797 checking for stdlib.h... yes 2024-09-27T20:22:56,934 checking for string.h... yes 2024-09-27T20:22:57,074 checking for memory.h... yes 2024-09-27T20:22:57,223 checking for strings.h... yes 2024-09-27T20:22:57,424 checking for inttypes.h... yes 2024-09-27T20:22:57,564 checking for stdint.h... yes 2024-09-27T20:22:57,716 checking for unistd.h... yes 2024-09-27T20:22:57,885 checking whether _XOPEN_SOURCE is declared... no 2024-09-27T20:22:58,051 checking C compiler flags needed for sse4.1... none 2024-09-27T20:22:58,254 checking C compiler flags needed for avx2... none 2024-09-27T20:22:58,420 checking C compiler flags needed for avx512f... none 2024-09-27T20:22:58,424 checking for pkg-config... /usr/bin/pkg-config 2024-09-27T20:22:58,430 checking pkg-config is at least version 0.9.0... yes 2024-09-27T20:22:58,432 checking for special C compiler options needed for large files... no 2024-09-27T20:22:58,612 checking for _FILE_OFFSET_BITS value needed for large files... 64 2024-09-27T20:22:58,627 checking shared library type for unknown-Linux... plain .so 2024-09-27T20:22:58,800 checking whether the linker supports versioned symbols... yes 2024-09-27T20:22:58,999 checking whether the compiler accepts -fvisibility=hidden... yes 2024-09-27T20:22:59,017 checking for stdlib.h... (cached) yes 2024-09-27T20:22:59,041 checking for unistd.h... (cached) yes 2024-09-27T20:22:59,218 checking for sys/param.h... yes 2024-09-27T20:22:59,417 checking for getpagesize... yes 2024-09-27T20:22:59,724 checking for working mmap... yes 2024-09-27T20:22:59,941 checking for gmtime_r... yes 2024-09-27T20:23:00,139 checking for fsync... yes 2024-09-27T20:23:00,340 checking for drand48... yes 2024-09-27T20:23:00,571 checking for srand48_deterministic... no 2024-09-27T20:23:00,778 checking whether fdatasync is declared... yes 2024-09-27T20:23:00,954 checking for fdatasync... yes 2024-09-27T20:23:01,350 checking for library containing log... -lm 2024-09-27T20:23:01,458 checking for zlib.h... yes 2024-09-27T20:23:01,658 checking for inflate in -lz... yes 2024-09-27T20:23:01,840 checking for library containing recv... none required 2024-09-27T20:23:01,926 checking for bzlib.h... yes 2024-09-27T20:23:02,102 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2024-09-27T20:23:02,117 checking whether htscodecs files are present... yes 2024-09-27T20:23:02,118 configure: WARNING: GCS support not enabled: requires libcurl support 2024-09-27T20:23:02,119 configure: WARNING: S3 support not enabled: requires libcurl support 2024-09-27T20:23:02,323 checking for library containing regcomp... none required 2024-09-27T20:23:02,393 configure: creating ./config.status 2024-09-27T20:23:02,704 config.status: creating config.mk 2024-09-27T20:23:02,748 config.status: creating htslib.pc.tmp 2024-09-27T20:23:02,796 config.status: creating config.h 2024-09-27T20:23:02,829 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2024-09-27T20:23:02,990 [ 17%] Performing build step for 'htslib' 2024-09-27T20:23:06,345 fatal: not a git repository: /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/include/htslib/htscodecs/../.git/modules/htscodecs 2024-09-27T20:23:06,352 Updating htscodecs/htscodecs/version.h : #define HTSCODECS_VERSION_TEXT "" 2024-09-27T20:24:01,226 [ 20%] No install step for 'htslib' 2024-09-27T20:24:01,347 [ 22%] Completed 'htslib' 2024-09-27T20:24:01,501 [ 22%] Built target htslib 2024-09-27T20:24:01,725 Scanning dependencies of target splam_clean 2024-09-27T20:24:01,781 [ 25%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2024-09-27T20:24:07,129 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2024-09-27T20:24:07,129 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,129 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-09-27T20:24:07,129 | ^~~~~~~~~~ 2024-09-27T20:24:07,130 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,130 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-09-27T20:24:07,130 | ^~~~~~ 2024-09-27T20:24:07,130 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,130 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-09-27T20:24:07,131 | ^~~~ 2024-09-27T20:24:07,131 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,131 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-09-27T20:24:07,131 | ^~~~ 2024-09-27T20:24:07,132 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,132 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-09-27T20:24:07,132 | ^~~~~~~~~~ 2024-09-27T20:24:07,133 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,133 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-09-27T20:24:07,133 | ^~~~~~ 2024-09-27T20:24:07,133 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,134 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-09-27T20:24:07,134 | ^~~~ 2024-09-27T20:24:07,134 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,134 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-09-27T20:24:07,134 | ^~~~ 2024-09-27T20:24:07,135 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,135 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T20:24:07,135 | ^~~~~~~~~~ 2024-09-27T20:24:07,136 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,136 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T20:24:07,136 | ^~~~~~~ 2024-09-27T20:24:07,136 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,137 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T20:24:07,137 | ^~~~ 2024-09-27T20:24:07,137 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,137 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T20:24:07,137 | ^~~~ 2024-09-27T20:24:07,137 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,138 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T20:24:07,138 | ^~~~ 2024-09-27T20:24:07,139 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,139 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T20:24:07,139 | ^~~~~~~~~~ 2024-09-27T20:24:07,139 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,139 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T20:24:07,140 | ^~~~~~~ 2024-09-27T20:24:07,140 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,140 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T20:24:07,140 | ^~~~ 2024-09-27T20:24:07,140 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,141 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T20:24:07,141 | ^~~~ 2024-09-27T20:24:07,141 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:24:07,141 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T20:24:07,141 | ^~~~ 2024-09-27T20:24:12,129 [ 28%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2024-09-27T20:24:20,137 [ 31%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2024-09-27T20:24:20,644 [ 34%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2024-09-27T20:24:21,149 [ 37%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2024-09-27T20:24:21,451 [ 40%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2024-09-27T20:24:23,201 [ 42%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2024-09-27T20:24:25,905 [ 45%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2024-09-27T20:24:29,850 [ 48%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2024-09-27T20:24:34,427 [ 51%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2024-09-27T20:24:38,594 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2024-09-27T20:24:42,653 [ 57%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2024-09-27T20:24:46,163 [ 60%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2024-09-27T20:24:48,364 [ 62%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2024-09-27T20:24:49,439 [ 65%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2024-09-27T20:24:50,223 [ 68%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2024-09-27T20:24:51,169 [ 71%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so 2024-09-27T20:25:12,232 [ 71%] Built target splam_clean 2024-09-27T20:25:12,382 Scanning dependencies of target splam_extract 2024-09-27T20:25:12,447 [ 74%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2024-09-27T20:25:22,670 [ 77%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2024-09-27T20:25:26,649 [ 80%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2024-09-27T20:25:29,358 [ 82%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2024-09-27T20:25:33,415 [ 85%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2024-09-27T20:25:36,935 [ 88%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2024-09-27T20:25:39,140 [ 91%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2024-09-27T20:25:40,214 [ 94%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2024-09-27T20:25:40,997 [ 97%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2024-09-27T20:25:41,948 [100%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so 2024-09-27T20:25:56,105 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/include/gclib/GVec.hh: In member function ‘setCapacity’: 2024-09-27T20:25:56,106 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/include/gclib/GVec.hh:107:14: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2024-09-27T20:25:56,106 107 | fArray=new OBJ[NewCapacity]; 2024-09-27T20:25:56,107 | ^ 2024-09-27T20:25:56,107 /usr/include/c++/10/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2024-09-27T20:25:56,107 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2024-09-27T20:25:56,108 | ^ 2024-09-27T20:26:04,346 [100%] Built target splam_extract 2024-09-27T20:26:04,716 -- The C compiler identification is GNU 10.2.1 2024-09-27T20:26:05,037 -- The CXX compiler identification is GNU 10.2.1 2024-09-27T20:26:05,082 -- Detecting C compiler ABI info 2024-09-27T20:26:05,451 -- Detecting C compiler ABI info - done 2024-09-27T20:26:05,508 -- Check for working C compiler: /usr/bin/cc - skipped 2024-09-27T20:26:05,509 -- Detecting C compile features 2024-09-27T20:26:05,512 -- Detecting C compile features - done 2024-09-27T20:26:05,535 -- Detecting CXX compiler ABI info 2024-09-27T20:26:05,923 -- Detecting CXX compiler ABI info - done 2024-09-27T20:26:06,011 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2024-09-27T20:26:06,014 -- Detecting CXX compile features 2024-09-27T20:26:06,017 -- Detecting CXX compile features - done 2024-09-27T20:26:06,043 -- pybind11 v2.11.0 dev1 2024-09-27T20:26:06,110 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3.6") 2024-09-27T20:26:06,669 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so 2024-09-27T20:26:06,677 -- Performing Test HAS_FLTO 2024-09-27T20:26:07,255 -- Performing Test HAS_FLTO - Success 2024-09-27T20:26:07,296 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 2024-09-27T20:26:07,297 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/include/htslib 2024-09-27T20:26:07,298 LIBRARY_OUTPUT_DIRECTORY: 2024-09-27T20:26:07,435 EXAMPLE_VERSION_INFO: 1.0.11 2024-09-27T20:26:07,437 -- Configuring done 2024-09-27T20:26:07,541 -- Generating done 2024-09-27T20:26:07,554 -- Build files have been written to: /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/build/temp.linux-armv7l-cpython-39/splam_clean 2024-09-27T20:26:07,752 Scanning dependencies of target htslib 2024-09-27T20:26:07,800 [ 2%] Creating directories for 'htslib' 2024-09-27T20:26:08,131 [ 5%] No download step for 'htslib' 2024-09-27T20:26:08,251 [ 8%] No update step for 'htslib' 2024-09-27T20:26:08,418 [ 11%] No patch step for 'htslib' 2024-09-27T20:26:08,537 [ 14%] Performing configure step for 'htslib' 2024-09-27T20:26:13,063 checking for gcc... gcc 2024-09-27T20:26:13,410 checking whether the C compiler works... yes 2024-09-27T20:26:13,410 checking for C compiler default output file name... a.out 2024-09-27T20:26:13,569 checking for suffix of executables... 2024-09-27T20:26:13,745 checking whether we are cross compiling... no 2024-09-27T20:26:13,831 checking for suffix of object files... o 2024-09-27T20:26:13,905 checking whether we are using the GNU C compiler... yes 2024-09-27T20:26:13,982 checking whether gcc accepts -g... yes 2024-09-27T20:26:14,124 checking for gcc option to accept ISO C89... none needed 2024-09-27T20:26:14,127 checking for ranlib... ranlib 2024-09-27T20:26:14,138 checking for grep that handles long lines and -e... /usr/bin/grep 2024-09-27T20:26:14,250 checking for C compiler warning flags... -Wall 2024-09-27T20:26:14,357 checking how to run the C preprocessor... gcc -E 2024-09-27T20:26:14,464 checking for egrep... /usr/bin/grep -E 2024-09-27T20:26:14,910 checking for ANSI C header files... yes 2024-09-27T20:26:15,056 checking for sys/types.h... yes 2024-09-27T20:26:15,187 checking for sys/stat.h... yes 2024-09-27T20:26:15,319 checking for stdlib.h... yes 2024-09-27T20:26:15,456 checking for string.h... yes 2024-09-27T20:26:15,594 checking for memory.h... yes 2024-09-27T20:26:15,733 checking for strings.h... yes 2024-09-27T20:26:15,914 checking for inttypes.h... yes 2024-09-27T20:26:16,055 checking for stdint.h... yes 2024-09-27T20:26:16,205 checking for unistd.h... yes 2024-09-27T20:26:16,373 checking whether _XOPEN_SOURCE is declared... no 2024-09-27T20:26:16,540 checking C compiler flags needed for sse4.1... none 2024-09-27T20:26:16,742 checking C compiler flags needed for avx2... none 2024-09-27T20:26:16,908 checking C compiler flags needed for avx512f... none 2024-09-27T20:26:16,912 checking for pkg-config... /usr/bin/pkg-config 2024-09-27T20:26:16,917 checking pkg-config is at least version 0.9.0... yes 2024-09-27T20:26:16,919 checking for special C compiler options needed for large files... no 2024-09-27T20:26:17,094 checking for _FILE_OFFSET_BITS value needed for large files... 64 2024-09-27T20:26:17,111 checking shared library type for unknown-Linux... plain .so 2024-09-27T20:26:17,282 checking whether the linker supports versioned symbols... yes 2024-09-27T20:26:17,482 checking whether the compiler accepts -fvisibility=hidden... yes 2024-09-27T20:26:17,495 checking for stdlib.h... (cached) yes 2024-09-27T20:26:17,519 checking for unistd.h... (cached) yes 2024-09-27T20:26:17,682 checking for sys/param.h... yes 2024-09-27T20:26:17,874 checking for getpagesize... yes 2024-09-27T20:26:18,179 checking for working mmap... yes 2024-09-27T20:26:18,399 checking for gmtime_r... yes 2024-09-27T20:26:18,599 checking for fsync... yes 2024-09-27T20:26:18,798 checking for drand48... yes 2024-09-27T20:26:19,028 checking for srand48_deterministic... no 2024-09-27T20:26:19,237 checking whether fdatasync is declared... yes 2024-09-27T20:26:19,412 checking for fdatasync... yes 2024-09-27T20:26:19,804 checking for library containing log... -lm 2024-09-27T20:26:19,903 checking for zlib.h... yes 2024-09-27T20:26:20,115 checking for inflate in -lz... yes 2024-09-27T20:26:20,294 checking for library containing recv... none required 2024-09-27T20:26:20,380 checking for bzlib.h... yes 2024-09-27T20:26:20,555 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2024-09-27T20:26:20,566 checking whether htscodecs files are present... yes 2024-09-27T20:26:20,568 configure: WARNING: GCS support not enabled: requires libcurl support 2024-09-27T20:26:20,568 configure: WARNING: S3 support not enabled: requires libcurl support 2024-09-27T20:26:20,754 checking for library containing regcomp... none required 2024-09-27T20:26:20,834 configure: creating ./config.status 2024-09-27T20:26:21,139 config.status: creating config.mk 2024-09-27T20:26:21,182 config.status: creating htslib.pc.tmp 2024-09-27T20:26:21,230 config.status: creating config.h 2024-09-27T20:26:21,249 config.status: config.h is unchanged 2024-09-27T20:26:21,254 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2024-09-27T20:26:21,422 [ 17%] Performing build step for 'htslib' 2024-09-27T20:26:21,498 fatal: not a git repository: /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/include/htslib/htscodecs/../.git/modules/htscodecs 2024-09-27T20:26:21,663 [ 20%] No install step for 'htslib' 2024-09-27T20:26:21,779 [ 22%] Completed 'htslib' 2024-09-27T20:26:21,935 [ 22%] Built target htslib 2024-09-27T20:26:22,105 Scanning dependencies of target splam_clean 2024-09-27T20:26:22,159 [ 25%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2024-09-27T20:26:27,395 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2024-09-27T20:26:27,395 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,395 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-09-27T20:26:27,395 | ^~~~~~~~~~ 2024-09-27T20:26:27,396 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,396 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-09-27T20:26:27,396 | ^~~~~~ 2024-09-27T20:26:27,396 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,397 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-09-27T20:26:27,397 | ^~~~ 2024-09-27T20:26:27,397 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,397 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-09-27T20:26:27,397 | ^~~~ 2024-09-27T20:26:27,398 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,398 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-09-27T20:26:27,399 | ^~~~~~~~~~ 2024-09-27T20:26:27,399 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,399 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-09-27T20:26:27,399 | ^~~~~~ 2024-09-27T20:26:27,399 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,400 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-09-27T20:26:27,400 | ^~~~ 2024-09-27T20:26:27,400 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,400 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-09-27T20:26:27,400 | ^~~~ 2024-09-27T20:26:27,401 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,402 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T20:26:27,402 | ^~~~~~~~~~ 2024-09-27T20:26:27,402 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,402 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T20:26:27,402 | ^~~~~~~ 2024-09-27T20:26:27,403 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,403 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T20:26:27,403 | ^~~~ 2024-09-27T20:26:27,403 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,403 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T20:26:27,403 | ^~~~ 2024-09-27T20:26:27,404 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,404 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-09-27T20:26:27,404 | ^~~~ 2024-09-27T20:26:27,405 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,405 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T20:26:27,405 | ^~~~~~~~~~ 2024-09-27T20:26:27,405 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,406 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T20:26:27,406 | ^~~~~~~ 2024-09-27T20:26:27,406 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,406 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T20:26:27,406 | ^~~~ 2024-09-27T20:26:27,407 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,407 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T20:26:27,407 | ^~~~ 2024-09-27T20:26:27,407 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-09-27T20:26:27,407 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-09-27T20:26:27,407 | ^~~~ 2024-09-27T20:26:32,395 [ 28%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2024-09-27T20:26:40,398 [ 31%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2024-09-27T20:26:40,871 [ 34%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2024-09-27T20:26:41,370 [ 37%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2024-09-27T20:26:41,672 [ 40%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2024-09-27T20:26:43,434 [ 42%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2024-09-27T20:26:46,139 [ 45%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2024-09-27T20:26:50,102 [ 48%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2024-09-27T20:26:54,658 [ 51%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2024-09-27T20:26:58,814 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2024-09-27T20:27:02,860 [ 57%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2024-09-27T20:27:06,372 [ 60%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2024-09-27T20:27:08,562 [ 62%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2024-09-27T20:27:09,640 [ 65%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2024-09-27T20:27:10,421 [ 68%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2024-09-27T20:27:11,367 [ 71%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so 2024-09-27T20:27:32,290 [ 71%] Built target splam_clean 2024-09-27T20:27:32,432 Scanning dependencies of target splam_extract 2024-09-27T20:27:32,485 [ 74%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2024-09-27T20:27:42,703 [ 77%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2024-09-27T20:27:46,711 [ 80%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2024-09-27T20:27:49,410 [ 82%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2024-09-27T20:27:53,439 [ 85%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2024-09-27T20:27:56,954 [ 88%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2024-09-27T20:27:59,163 [ 91%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2024-09-27T20:28:00,237 [ 94%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2024-09-27T20:28:01,016 [ 97%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2024-09-27T20:28:01,967 [100%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so 2024-09-27T20:28:16,182 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/include/gclib/GVec.hh: In member function ‘setCapacity’: 2024-09-27T20:28:16,183 /tmp/pip-wheel-1xkjtqps/splam_9f752f8358d74878912f31d465e78250/include/gclib/GVec.hh:107:14: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2024-09-27T20:28:16,183 107 | fArray=new OBJ[NewCapacity]; 2024-09-27T20:28:16,184 | ^ 2024-09-27T20:28:16,184 /usr/include/c++/10/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2024-09-27T20:28:16,184 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2024-09-27T20:28:16,184 | ^ 2024-09-27T20:28:24,511 [100%] Built target splam_extract 2024-09-27T20:28:24,607 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-09-27T20:28:24,607 !! 2024-09-27T20:28:24,608 ******************************************************************************** 2024-09-27T20:28:24,608 Please avoid running ``setup.py`` directly. 2024-09-27T20:28:24,608 Instead, use pypa/build, pypa/installer or other 2024-09-27T20:28:24,608 standards-based tools. 2024-09-27T20:28:24,608 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-09-27T20:28:24,609 ******************************************************************************** 2024-09-27T20:28:24,609 !! 2024-09-27T20:28:24,609 self.initialize_options() 2024-09-27T20:28:24,633 installing to build/bdist.linux-armv7l/wheel 2024-09-27T20:28:24,633 running install 2024-09-27T20:28:24,659 running install_lib 2024-09-27T20:28:24,686 creating build/bdist.linux-armv7l/wheel 2024-09-27T20:28:24,687 copying build/lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2024-09-27T20:28:24,721 copying build/lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2024-09-27T20:28:24,752 creating build/bdist.linux-armv7l/wheel/splam 2024-09-27T20:28:24,753 copying build/lib.linux-armv7l-cpython-39/splam/parse.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T20:28:24,756 copying build/lib.linux-armv7l-cpython-39/splam/splam.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T20:28:24,758 copying build/lib.linux-armv7l-cpython-39/splam/header.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T20:28:24,761 copying build/lib.linux-armv7l-cpython-39/splam/chr_size.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T20:28:24,764 copying build/lib.linux-armv7l-cpython-39/splam/main.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T20:28:24,767 copying build/lib.linux-armv7l-cpython-39/splam/__init__.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T20:28:24,769 copying build/lib.linux-armv7l-cpython-39/splam/prediction.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T20:28:24,772 copying build/lib.linux-armv7l-cpython-39/splam/extract_gff.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T20:28:24,774 copying build/lib.linux-armv7l-cpython-39/splam/clean_gff.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T20:28:24,777 copying build/lib.linux-armv7l-cpython-39/splam/config.py -> build/bdist.linux-armv7l/wheel/./splam 2024-09-27T20:28:24,779 running install_egg_info 2024-09-27T20:28:24,818 running egg_info 2024-09-27T20:28:24,845 writing splam.egg-info/PKG-INFO 2024-09-27T20:28:24,850 writing dependency_links to splam.egg-info/dependency_links.txt 2024-09-27T20:28:24,851 writing entry points to splam.egg-info/entry_points.txt 2024-09-27T20:28:24,853 writing requirements to splam.egg-info/requires.txt 2024-09-27T20:28:24,854 writing top-level names to splam.egg-info/top_level.txt 2024-09-27T20:28:24,885 reading manifest file 'splam.egg-info/SOURCES.txt' 2024-09-27T20:28:25,286 reading manifest template 'MANIFEST.in' 2024-09-27T20:28:25,720 adding license file 'LICENSE' 2024-09-27T20:28:25,855 writing manifest file 'splam.egg-info/SOURCES.txt' 2024-09-27T20:28:25,859 Copying splam.egg-info to build/bdist.linux-armv7l/wheel/./splam-1.0.11-py3.9.egg-info 2024-09-27T20:28:25,873 running install_scripts 2024-09-27T20:28:25,931 creating build/bdist.linux-armv7l/wheel/splam-1.0.11.dist-info/WHEEL 2024-09-27T20:28:25,934 creating '/tmp/pip-wheel-bxl9z5wx/splam-1.0.11-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-09-27T20:28:26,222 adding 'splam_clean.cpython-39-arm-linux-gnueabihf.so' 2024-09-27T20:28:26,488 adding 'splam_extract.cpython-39-arm-linux-gnueabihf.so' 2024-09-27T20:28:26,497 adding 'splam/__init__.py' 2024-09-27T20:28:26,503 adding 'splam/chr_size.py' 2024-09-27T20:28:26,505 adding 'splam/clean_gff.py' 2024-09-27T20:28:26,506 adding 'splam/config.py' 2024-09-27T20:28:26,507 adding 'splam/extract_gff.py' 2024-09-27T20:28:26,508 adding 'splam/header.py' 2024-09-27T20:28:26,510 adding 'splam/main.py' 2024-09-27T20:28:26,512 adding 'splam/parse.py' 2024-09-27T20:28:26,514 adding 'splam/prediction.py' 2024-09-27T20:28:26,515 adding 'splam/splam.py' 2024-09-27T20:28:26,518 adding 'splam-1.0.11.dist-info/LICENSE' 2024-09-27T20:28:26,520 adding 'splam-1.0.11.dist-info/METADATA' 2024-09-27T20:28:26,521 adding 'splam-1.0.11.dist-info/WHEEL' 2024-09-27T20:28:26,522 adding 'splam-1.0.11.dist-info/entry_points.txt' 2024-09-27T20:28:26,523 adding 'splam-1.0.11.dist-info/top_level.txt' 2024-09-27T20:28:26,524 adding 'splam-1.0.11.dist-info/RECORD' 2024-09-27T20:28:26,535 removing build/bdist.linux-armv7l/wheel 2024-09-27T20:28:26,641 Building wheel for splam (setup.py): finished with status 'done' 2024-09-27T20:28:26,654 Created wheel for splam: filename=splam-1.0.11-cp39-cp39-linux_armv7l.whl size=921079 sha256=7f56403ae779a24c72ddcfc4183ed5f317fc33b56c1622b9543aa2a3f57d80b6 2024-09-27T20:28:26,655 Stored in directory: /tmp/pip-ephem-wheel-cache-iqs71hq7/wheels/82/68/cd/357d479a7b4df4db53b7b67a5ccd85de25ed16713e21d9d7e9 2024-09-27T20:28:26,667 Successfully built splam 2024-09-27T20:28:26,696 Removed build tracker: '/tmp/pip-build-tracker-quny6716'