2024-10-11T23:23:01,561 Disabling truststore because Python version isn't 3.10+
2024-10-11T23:23:02,042 Created temporary directory: /tmp/pip-build-tracker-llen406n
2024-10-11T23:23:02,043 Initialized build tracking at /tmp/pip-build-tracker-llen406n
2024-10-11T23:23:02,043 Created build tracker: /tmp/pip-build-tracker-llen406n
2024-10-11T23:23:02,043 Entered build tracker: /tmp/pip-build-tracker-llen406n
2024-10-11T23:23:02,043 Created temporary directory: /tmp/pip-wheel-3q5uo923
2024-10-11T23:23:02,049 Created temporary directory: /tmp/pip-ephem-wheel-cache-h8rcbd4r
2024-10-11T23:23:02,093 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-10-11T23:23:02,096 2 location(s) to search for versions of viennarna:
2024-10-11T23:23:02,096 * https://pypi.org/simple/viennarna/
2024-10-11T23:23:02,096 * https://www.piwheels.org/simple/viennarna/
2024-10-11T23:23:02,096 Fetching project page and analyzing links: https://pypi.org/simple/viennarna/
2024-10-11T23:23:02,097 Getting page https://pypi.org/simple/viennarna/
2024-10-11T23:23:02,098 Found index url https://pypi.org/simple/
2024-10-11T23:23:02,197 Fetched page https://pypi.org/simple/viennarna/ as application/vnd.pypi.simple.v1+json
2024-10-11T23:23:02,221   Found link https://files.pythonhosted.org/packages/77/72/75bb8baeebb7112f80e8561a3e31edef5d108309900e6cc409d4ced943cf/ViennaRNA-2.5.0a5.tar.gz (from https://pypi.org/simple/viennarna/), version: 2.5.0a5
2024-10-11T23:23:02,221   Found link https://files.pythonhosted.org/packages/82/c0/576a5423bb28d496f75bedad46a8edeafaef439c2573d56d2340c525dc8e/ViennaRNA-2.6.2a0.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2a0
2024-10-11T23:23:02,222   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/56/d7/4be5f10eed2081a3bd54b8ba051159d3d05432eecd58c83b72f535b76e21/ViennaRNA-2.6.2-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,222   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/89/fa/1b4d9474cff058f4e23ce3dffc2c8cc6fa7aa980782f44324fbeeabb55f0/ViennaRNA-2.6.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,222   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/b2/9eeacfc00e825ca78aabc27ead72c32b2056e74d784846e66c80549f8bc3/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,222   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a5/f3/9c602f1c4e7cf2bb95c31bba8b4908f2ddf862204aceb999377b1e76a263/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,223   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b9/50/273d56b829109ec99f52a3250d5975969ea92f8a1d1fe569460a8505a067/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,223   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/4e/c3/d1d4388ce289b97970f762a68cfd7821971b80e2c2a56c3e7c091485c966/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,223   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/fa/c1/b794e68d98c1b7a204e4e5da625e9953f83a3c554d19689d9a1108a1d9fb/ViennaRNA-2.6.2-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,223   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/de/45/e9b08e19992bec9300ffb94cd49f7ea974912cee94de5d4dd0b10697d0d7/ViennaRNA-2.6.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,223   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/38/c8/71736f66a09668eaef822836989f72781dd8ae12f4d0303170445429889c/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,224   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/70/56/bf9b92ad84d1aa0b31265d9a14c58ffcaa236ae460c4365737145bb12489/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,224   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ba/69/db7732e6870f2f25c62edbc619cffc645394a8d54e6f8a928961036d78e1/ViennaRNA-2.6.2-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,224   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/04/c1/f5c82621ad6b749fd552d59de22f520f908277dd976f4d5a33f367d30de8/ViennaRNA-2.6.2-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,224   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f3/3e/5b5dec4d557b9f654c71b89f7aad42a7f9fc4c7c87f1a9fa68e5a51b3163/ViennaRNA-2.6.2-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,224   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c9/b9/89a9e6c7c919b641718d3a60d15cbf4b66862df180079ca0e5a8f418a6f0/ViennaRNA-2.6.2-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,225   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/47/04/470fb66f45780ae342dcd0c39fd3cb01e4fc59ea95066ba04c3d5e5f0f7d/ViennaRNA-2.6.2-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,225   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/76/ce/2ada9ed900e320fa7ed9bac4fb2a505e16b83a9116e21ec66958885b5f90/ViennaRNA-2.6.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,225   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3b/5e/16bbe0cda15be9dd038dbe30b3fb53d8f8edc21c5121f67bc594934b196c/ViennaRNA-2.6.2-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,225   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/66/7f/56eb458650c056b8c1ed6e22185238926e7836b5701d357ef896ce5abb33/ViennaRNA-2.6.2-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,225   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/1c/ef/3297531f48acfdeeb4f10083d0d7d7e5f7af06e7905ac2061344ccac6022/ViennaRNA-2.6.2-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,226   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/36/44/ac509347ec8f9b9c5cb69f4adc993b6f782bab7ed63639a1645450bb5d1c/ViennaRNA-2.6.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,226   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b8/34/89df39d5162afa18e7f487cb110d8aa8ae936d909b42e3be398e1c41b758/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,226   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/bb/0f/c33a98d884ada4b9c7478bed87eb0c66de9da9ecc45babf7604e652d7e36/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,226   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e6/57/7f28f32fa5b43507cd5d4b871fa8d5a43645db2acaf94a028c31b7dd1d8b/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,226   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/a7/fe40da076361a3c71467bcdbba0fc42bab89b4561869c966ffa2539dc942/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,227   Found link https://files.pythonhosted.org/packages/b3/73/44904c687790f2d9e151caf4dc6f1a97eb1beb5da1d089a79784abefa4a2/ViennaRNA-2.6.2.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2
2024-10-11T23:23:02,227   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a3/9e/1e2ae50082ea8589f06adc18fd9d4ba5d5eceeaf11fdb00a507a7633a6c5/ViennaRNA-2.6.3-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,227   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/5f/8f/c4b456b1d535ca3a5f5647e038f5ec9fab5925482fb538fcba51f2bc6a44/ViennaRNA-2.6.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,228   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/24/86/ceb1b342925dedb6a9e5fd4eddf3c66f3c511e42c4a8e34aa20aa04b6ed5/ViennaRNA-2.6.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,228   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/6c/c7/373786745bf38c4a76662c103222151f55d33f7a0862bf557fdb95578526/ViennaRNA-2.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,228   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/08/05/67326020bf4fb1f0b1326933453e8e41a36c3bfdea6b8cf87a07bcb3daf4/ViennaRNA-2.6.3-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,228   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/48/2f/e59a3b66f4ca9abc6e2aa2cd8ec21d1539d133756ebfbe8dfd2f3b591199/ViennaRNA-2.6.3-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,228   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7a/9f/8c2cb862e732bd3c2d8920a912cf8924605c62e97bcbcda002f83d533ff6/ViennaRNA-2.6.3-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,229   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/59/aa/b2280bcc389c924dc72a72c1ae8028fe695c4a245f41b2ab1eb8681d91bd/ViennaRNA-2.6.3-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,229   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/46/b4/70c9716977d6e0019246b03d258802c568d6fa5b3cd0987deeac778dc262/ViennaRNA-2.6.3-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,229   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b9/75/d9bbc8fb67bd585dc719c34ac4439a2bed0a92015c3548f9727b968612d4/ViennaRNA-2.6.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,229   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/6c/0f/0e8ab6395909f664f52e969308655ba73a5e76e0f39892bdae7da5348f1c/ViennaRNA-2.6.3-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,229   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c0/8b/042597cb78def0a5d3b60fd7d38b68b840831409035ce6a42a3910642b2a/ViennaRNA-2.6.3-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,230   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/55/61/7b341f99bd59f00ba5e6646a86409530c24802961ec2394d258eb3faffd5/ViennaRNA-2.6.3-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,230   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c8/0d/8b2999d3263215abd044039a2a7bede2211569f73da3015e2be1566d63db/ViennaRNA-2.6.3-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,230   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c2/34/0dbb99607323989dd0c085a539ce0a256c5f3f0d9acc10dda20a11b7e81e/ViennaRNA-2.6.3-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,230   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/cf/6f/95878bb677b6accc109fc47a6b94e1e590b3fefecce2fd8f241e477f3433/ViennaRNA-2.6.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,230   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3c/8b/9bbe373989b50478d4b0440c6e5262330fa653426c5b305a353e2a58113a/ViennaRNA-2.6.3-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,231   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/46/3a/f24fda11d092c8f67ce31b2ecd790ae788045df5a3ab4497b1fd57d8272e/ViennaRNA-2.6.3-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,231   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7b/85/3291c8de1dc632df62d74f99ffc7d5de990b293d61e14afbd72ca54f0776/ViennaRNA-2.6.3-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,231   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f5/14/8a958e38331b63c35f688645a7c8ca789e016290d25ef26faf9d34ea6d72/ViennaRNA-2.6.3-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,231   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b7/9c/e433da3ed44a34fef8aa9710e6838ef44ddb314455fc4b1a071edb952f23/ViennaRNA-2.6.3-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,231   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e3/90/8324e8a078d271eea60e30163e0097f40b5fffcfc2f22ebc60af685cb4ce/ViennaRNA-2.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,232   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/23/08/678c1fa8bd1c355fecfd9375434cfb452bdf1d9d5eb67147c2a8f2f0b85f/ViennaRNA-2.6.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,232   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/08/71/4cf098294da264cadbd1e35e25f5664b37278ce4640ff983f9a48a4b442f/ViennaRNA-2.6.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,232   Found link https://files.pythonhosted.org/packages/3b/c9/0f29227b21be07188d7eca38fdc1d4a8f5aff444e2301f635b48c5a9212a/ViennaRNA-2.6.3.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.3
2024-10-11T23:23:02,233   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ae/44/d577ecb451fb46a247c532af2b64ac5210cbaa44670e338f2a5f5d9f26a9/ViennaRNA-2.6.4-cp310-cp310-macosx_10_14_universal2.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,233   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/37/f4/512139978d1abea349cc9b47105a89650c362458ef197ffae65a542ed987/ViennaRNA-2.6.4-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,233   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/d3/3d/dad21aa9984aabe2e7e2e4a654980b4f97e1055269683ec2aabaf3636868/ViennaRNA-2.6.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,233   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/22/4e/0bee35f4b5473d4e67e2bd6b86e3f7f3e810a2e0fd65af6bd3127bf9cc46/ViennaRNA-2.6.4-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,233   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/2c/28/a02e7c3f4f9a8ba7a04f731c501e2bf993712a3f6c4ddc0515f304c4d142/ViennaRNA-2.6.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,234   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e7/22/e6eca1c4eeaafbe5fff316193d9e14df49565c64d285ee3427ecd216452d/ViennaRNA-2.6.4-cp310-cp310-musllinux_1_1_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,234   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/58/84/db82240387642dacc6250de7b9e9ae46d803456154a5be04347a52a51d85/ViennaRNA-2.6.4-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,234   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f4/d7/adb55a6cab29a6d061599254338bf020f1ca06cfa30abeeceae32d66b1e3/ViennaRNA-2.6.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,234   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/1b/c4/bdfee2a4919c3a1c61bca62fb4b31b876ff29036580d3df86df9f4ff1fa8/ViennaRNA-2.6.4-cp311-cp311-macosx_10_14_universal2.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,234   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/80/95/ea210ec71ba5c4733bd2d38b5a28dc75aa4f9e25121901a701e638227d26/ViennaRNA-2.6.4-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,235   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/0a/9b/f0aaa97ae5066f7834a5ebb1715a5543d5788b51e4d88c28d0991a99cfd0/ViennaRNA-2.6.4-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,235   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b5/de/6938be5328062a168d423d1bfd9de198cc37d37ec6d255118e7e5f02fd54/ViennaRNA-2.6.4-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,235   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/0d/46/320b29d453cfbc56702bccc99d62be5d38f4cd48adfae988c6129afd6d66/ViennaRNA-2.6.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,235   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ff/d7/38c0c83ba378c8fd16df113e95a57c7f4c82b76f4591f2ac42487a58a8dc/ViennaRNA-2.6.4-cp311-cp311-musllinux_1_1_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,235   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ae/11/a811edc36fb930843041fa6a9a48ae64b0417810c107e80bd83b9cc472f3/ViennaRNA-2.6.4-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,236   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/37/a4/6b7fd246c3f2f18315fbadab6d29fe38c9f69d587d3921f3fa6aca24f8d7/ViennaRNA-2.6.4-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,236   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b4/7e/9bebb77adce65380a0b484cdc51fb8e231d8ae6e6193bbce82f6924d011d/ViennaRNA-2.6.4-cp38-cp38-macosx_10_14_universal2.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,236   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/77/a8/be255f7f001468a17c98e448bffbd635e4a3db9162f31ac15efa1e94f5a3/ViennaRNA-2.6.4-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,236   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b0/ac/6de28ec570c1ae8428bf39ce94662f3528ba80d5713a20c12a0611c81b48/ViennaRNA-2.6.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,236   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/81/e4/4fb24e3a8d8d1dae7b74df2be76e190cb5d6a7afb88cead665941cad4ace/ViennaRNA-2.6.4-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,236   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ac/04/81d46b8ca018f1da5a47f5df970f4d8a3bd5ad5ed11a0d3b8b4fc7990293/ViennaRNA-2.6.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,237   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/57/f3/3b162475fcbc331b0a6cb7283ad7db93ed81fce1cfb755346171c2561972/ViennaRNA-2.6.4-cp38-cp38-musllinux_1_1_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,237   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/de/ec/8b6ef6ae823185a09e338b6bc5c30fc24954b64adbc22ff0cd94b7006ebc/ViennaRNA-2.6.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,237   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/54/1c/5a3ab1a182eb1cd722fe705f2bb3f7f1b69d2a2e2c58d2041f1ead0a5cbe/ViennaRNA-2.6.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,237   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/12/a4/de2e4073d00e5875180c03f6959d7d21236aeaff9f4abba5ed4c0103caec/ViennaRNA-2.6.4-cp39-cp39-macosx_10_14_universal2.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,237   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/00/e4/0e3be2424395638a2a1b13be9d77026fcc88c3df049214d65e952abd86e0/ViennaRNA-2.6.4-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,238   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/83/e8/e3ca4ea66864ffd6ee92dff037fee55cd7c71c2e308582e619149b90f728/ViennaRNA-2.6.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,238   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c8/00/9060255b59929afe91da29d289cd8c938005617babf07959740c57ff39eb/ViennaRNA-2.6.4-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,238   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a9/4b/3a29f5b1d16303060114ac246822b15f7cd72bdc41807bf4fc6acc3714d5/ViennaRNA-2.6.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,238   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/50/74/785b12ae7fb30cf8866857e9e16f4e420958bdccf40ccf237b1d9dd2ca86/ViennaRNA-2.6.4-cp39-cp39-musllinux_1_1_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,238   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/d5/b9/f2c15d890d305bc028ed7e24bb7039d7d7dd918172a5684ea6d68203cba0/ViennaRNA-2.6.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,239   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/07/68/80cf4d7b0c905f27dbfbbfe24ed0aeba243053807fecc553cbb3bbf81b31/ViennaRNA-2.6.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,239   Found link https://files.pythonhosted.org/packages/72/f2/5c17a51459fe4f2bcf5f9bfb269aef2c35d1776cb2b03b62543d112bfb82/ViennaRNA-2.6.4.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.4
2024-10-11T23:23:02,239   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c6/bc/20e47e6070c455a0e69e1738b1631110878ae425f90a31c71d697a2ed718/ViennaRNA-2.7.0-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,240   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c9/60/fb4f55965c8771e6354b6cb08bfcc3f81dce72c9b22a1d1d446f11caa879/ViennaRNA-2.7.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,240   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/9e/e7/59865764b68c09c496ea1baf008a0bf3cbab4e99bd75de80c2c1d965aa78/ViennaRNA-2.7.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,240   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/d8/47/3a24756b5019078151c878e0af48c347522cb22ff76a5fa030763170b2ac/ViennaRNA-2.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,240   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/33/2c/5d41c389079a165f2d73812fb2533144db7dc7590c9d0ce3652155ac0ae8/ViennaRNA-2.7.0-cp310-cp310-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,240   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/55/fd/ad23121002ef91e3d7d2b47ea0e41fd5d944948814bf2e11202714ef6e31/ViennaRNA-2.7.0-cp310-cp310-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,241   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/74/81/e580f0a9e176384b10fd87a71733d02d0bdcc55338ccee192c17d279be36/ViennaRNA-2.7.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,241   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f7/33/b801b7307ec43c171786b68d024e66e5f1e7ed9cce6e7e45cfbfc4fd7aa1/ViennaRNA-2.7.0-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,241   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ea/f6/7e83e30b41c9707cd26e51029ccafe6fa4c7ff23e394035b3437e0ce6243/ViennaRNA-2.7.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,241   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/44/2c/b7dfdbc78523b681b0f588820624f4ab0d85761bc555721e188957cd2680/ViennaRNA-2.7.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,241   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f8/5c/798a7bd9018d22de07d000fba8bccaf7af0d3dae13e3dcad940ad9951307/ViennaRNA-2.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,242   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/d1/08/adfbd6e62dd0075c09c0b1046da5f5bc37351e3333a30472d2c335e97539/ViennaRNA-2.7.0-cp311-cp311-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,242   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b2/52/3a4be96e2341113511d7ecc06b28b0f176440c4bfe26d7abbb57d97ae244/ViennaRNA-2.7.0-cp311-cp311-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,242   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/1e/65/d6fc56d73706a39b351d04116b9634b270d48b15310cd49f18aba40b232a/ViennaRNA-2.7.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,242   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/90/a2/5a50243d49cdeccf4dd21ae0007e49f156c23cb9b66f2c4010d3718dbcaa/ViennaRNA-2.7.0-cp312-cp312-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,242   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/9c/58/c50ea1c787da20812b1d8a1419984684648aa7d8b11ab2536784e175d934/ViennaRNA-2.7.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,243   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/6f/ec/cbeb6f5c8d9cf2929002864b31a3ae9e8ec07ecd15518c643343abc6dcd5/ViennaRNA-2.7.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,243   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/03/2f/73ea7b15dc226f120dbc89f3f4bb40b6a5a26ac969898255f22123a94d1a/ViennaRNA-2.7.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,243   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/24/73/7b48aa6529fb27a38a7b32c1ed7f5be8194bb665c939db5506cb8f52edf5/ViennaRNA-2.7.0-cp312-cp312-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,243   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/62/b4/c3a50349e938326bd456ca430f6569d04151f5c9263ec67dc3f2541ddb48/ViennaRNA-2.7.0-cp312-cp312-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,243   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/34/ec/e8d83e0e06b13e2b581070d019b16d898a33552f317a6ae72052a934f666/ViennaRNA-2.7.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,244   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/2a/c1/ef2bfd2b91641e0412a794968d5adb9aafd40992621fb5386cc836cea04d/ViennaRNA-2.7.0-cp313-cp313-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,244   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/97/c8/ba889f0a455e9cb41e52bb5a6617a1ab88d114e25ca797c436816f7cf311/ViennaRNA-2.7.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,244   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/2e/f9/136bcb00c5169b53299a6c65ffb9572c76c142c578d251b121aaffdc0773/ViennaRNA-2.7.0-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,244   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7d/61/44e8f1be14dee657b1d0faa617c1dfd6b288cb739c4c3fbf9a7832305e22/ViennaRNA-2.7.0-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,244   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/33/c4/d969033090c802b96b766fc85b61457a290d5f38c03e7686f229aef8ba71/ViennaRNA-2.7.0-cp313-cp313-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,245   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/5e/d1/85916f237369640fc85aff22392ecf4fb19355c200190da2ae5772ed6aa1/ViennaRNA-2.7.0-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,245   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/31/ee/658f195f7f744d01d8d5261262c17257778bd62bf8e407c83ef207fb17b7/ViennaRNA-2.7.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,245   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/11/2f/73850d076dd208fde88585e498ba4a66672edae3d0a593f1ab0fb0888c3d/ViennaRNA-2.7.0-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,245   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/aa/62/ad8d49122f8cf0a687dfcf48d97493a2ed1dae38cb4f1784eb8483abf6ca/ViennaRNA-2.7.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,245   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f0/b6/2ec5f887d6dee750503935dab31121321734c58060684dd8db4a269ee272/ViennaRNA-2.7.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,245   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ef/25/b254e7c48f851be16e69d3ed8f7b67922353a870490533b1512b85e06b7c/ViennaRNA-2.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,246   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/fc/0a/9b26bc69f08d555493d44a89583dd6a7238db2c12187cbcbc42575558664/ViennaRNA-2.7.0-cp39-cp39-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,246   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c9/1a/3f7fa8d4659a5c39212b3423a075569958a51888e51dae3c3f690bc34e8d/ViennaRNA-2.7.0-cp39-cp39-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,246   Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/42/ca/caed18628b4b2ecb04e03eb61598432050104f2d75b1a2f5b2868274b20f/ViennaRNA-2.7.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8)
2024-10-11T23:23:02,247   Found link https://files.pythonhosted.org/packages/86/94/c65cfb4666efed90fc0fc241ee646054c5f1f7d16e83a39ab43ce7dfbe35/viennarna-2.7.0.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.7.0
2024-10-11T23:23:02,247 Fetching project page and analyzing links: https://www.piwheels.org/simple/viennarna/
2024-10-11T23:23:02,247 Getting page https://www.piwheels.org/simple/viennarna/
2024-10-11T23:23:02,248 Found index url https://www.piwheels.org/simple/
2024-10-11T23:23:02,300 Fetched page https://www.piwheels.org/simple/viennarna/ as text/html
2024-10-11T23:23:02,301 Skipping link: not a file: https://www.piwheels.org/simple/viennarna/
2024-10-11T23:23:02,301 Skipping link: not a file: https://pypi.org/simple/viennarna/
2024-10-11T23:23:02,318 Given no hashes to check 1 links for project 'viennarna': discarding no candidates
2024-10-11T23:23:02,319 Collecting viennarna==2.7.0
2024-10-11T23:23:02,321   Created temporary directory: /tmp/pip-unpack-t1e8j5zn
2024-10-11T23:23:02,338   Downloading viennarna-2.7.0.tar.gz (5.9 MB)
2024-10-11T23:23:08,191   Added viennarna==2.7.0 from https://files.pythonhosted.org/packages/86/94/c65cfb4666efed90fc0fc241ee646054c5f1f7d16e83a39ab43ce7dfbe35/viennarna-2.7.0.tar.gz to build tracker '/tmp/pip-build-tracker-llen406n'
2024-10-11T23:23:08,195   Created temporary directory: /tmp/pip-build-env-4ciowuka
2024-10-11T23:23:08,205   Installing build dependencies: started
2024-10-11T23:23:08,206   Running command pip subprocess to install build dependencies
2024-10-11T23:23:09,247   Using pip 24.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-10-11T23:23:09,248   Non-user install by explicit request
2024-10-11T23:23:09,249   Disabling truststore because Python version isn't 3.10+
2024-10-11T23:23:09,730   Created build tracker: /tmp/pip-build-tracker-llen406n
2024-10-11T23:23:09,731   Entered build tracker: /tmp/pip-build-tracker-llen406n
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2024-10-11T23:23:09,741   Created temporary directory: /tmp/pip-ephem-wheel-cache-gdg5pynz
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2024-10-11T23:23:09,793   Getting page https://pypi.org/simple/setuptools/
2024-10-11T23:23:09,795   Found index url https://pypi.org/simple/
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2024-10-11T23:23:12,249     Found link https://www.piwheels.org/simple/setuptools/setuptools-66.0.0-py3-none-any.whl#sha256=3ddef51d2ef82b1a084aad40047d6756cb0e98df10459c47dae93aa11eeb02e0 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.7), version: 66.0.0
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2024-10-11T23:23:12,252     Found link https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl#sha256=ad515432e028cbf9bf9073ec89d24ca2cc6731522022b62d909e1312461977fd (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.7), version: 65.6.3
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2024-10-11T23:23:12,257     Found link https://www.piwheels.org/simple/setuptools/setuptools-65.5.1-py3-none-any.whl#sha256=5142de54f515d937b0989408c6b980e8ad5f50bad7c07aa32309c5c83f6606fc (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.7), version: 65.5.1
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2024-10-11T23:23:12,260     Found link https://www.piwheels.org/simple/setuptools/setuptools-65.4.1-py3-none-any.whl#sha256=dedd3ff536626958f1723c8150f4ac12b5e973476eaf1bdad5fdf28268b9607d (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.7), version: 65.4.1
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2024-10-11T23:23:12,272     Found link https://www.piwheels.org/simple/setuptools/setuptools-64.0.3-py3-none-any.whl#sha256=3dfd94364bfe7530a39b4421edd58693e8a17ea0368201459954474789630bd1 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.7), version: 64.0.3
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2024-10-11T23:23:12,277     Found link https://www.piwheels.org/simple/setuptools/setuptools-63.4.3-py3-none-any.whl#sha256=c86891e1e64a371c1851e969089039bfdd2f32d26cd249be165ba2514303a050 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.7), version: 63.4.3
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2024-10-11T23:23:12,287     Found link https://www.piwheels.org/simple/setuptools/setuptools-63.0.0-py3-none-any.whl#sha256=e12b84a34cc5b9d9416d03776608700af1778e82059eeb10271f0ffd2e11810b (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.7), version: 63.0.0
2024-10-11T23:23:12,288     Found link https://www.piwheels.org/simple/setuptools/setuptools-63.0.0b1-py3-none-any.whl#sha256=67625af0d6d1dcf48f99cedc838df8fb676ce12aab67ed33bcc99219f629850e (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.7), version: 63.0.0b1
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2024-10-11T23:23:12,312     Found link https://www.piwheels.org/simple/setuptools/setuptools-60.10.0-py3-none-any.whl#sha256=7bd3384b3e8203d42c64efa4acc388892c5a183a65ee581689d15225ae18e5ea (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.7), version: 60.10.0
2024-10-11T23:23:12,314     Found link https://www.piwheels.org/simple/setuptools/setuptools-60.9.3-py3-none-any.whl#sha256=c05b08e7725495dc61f3045db23246554f6ffeb939896b3d694b3cb31c4ec08e (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.7), version: 60.9.3
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2024-10-11T23:23:12,318     Found link https://www.piwheels.org/simple/setuptools/setuptools-60.9.0-py3-none-any.whl#sha256=e6c8df111443eeef4e17993edee8717025745459598a309fb007682b7ce4fa77 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.7), version: 60.9.0
2024-10-11T23:23:12,319     Found link https://www.piwheels.org/simple/setuptools/setuptools-60.8.2-py3-none-any.whl#sha256=121c3d7b9f51bdabfead1218dbc0eb255d3e2bfe6d641c33ab97d168bec171b6 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.7), version: 60.8.2
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2024-10-11T23:23:12,322     Found link https://www.piwheels.org/simple/setuptools/setuptools-60.8.0-py3-none-any.whl#sha256=ea15bc59757f59fdbba48d762cee1af31b4e3c8837dc391ef1ffffa015858c30 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.7), version: 60.8.0
2024-10-11T23:23:12,323     Found link https://www.piwheels.org/simple/setuptools/setuptools-60.7.1-py3-none-any.whl#sha256=1edd7488fa9164584008b980106cea0103ae0db09b450cdf9d494afc1a0144aa (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.7), version: 60.7.1
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2024-10-11T23:23:12,326     Found link https://www.piwheels.org/simple/setuptools/setuptools-60.6.0-py3-none-any.whl#sha256=000ac6ced41920b6d29f614dae82619c3db15cd8c74848882db78f37d103f103 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.7), version: 60.6.0
2024-10-11T23:23:12,327     Found link https://www.piwheels.org/simple/setuptools/setuptools-60.5.0-py3-none-any.whl#sha256=dac82fcac9068cd04127f607b870a0f568f642147796e84ce93ae53960e6c5b4 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.7), version: 60.5.0
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2024-10-11T23:23:12,358     Found link https://www.piwheels.org/simple/setuptools/setuptools-58.5.3-py3-none-any.whl#sha256=0bc9c11341c16578dcc0a2b63ebc3c45b84cf4bf2a5e50fb04de196a894e5142 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.6), version: 58.5.3
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2024-10-11T23:23:12,409     Found link https://www.piwheels.org/simple/setuptools/setuptools-51.1.0.post20201221-py3-none-any.whl#sha256=b19bdbc197e43337d350cc3806497ab6022802175dfb1abea16c0c3afd233f03 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.6), version: 51.1.0.post20201221
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2024-10-11T23:23:12,446     Found link https://www.piwheels.org/simple/setuptools/setuptools-47.3.2-py3-none-any.whl#sha256=320a31aebad9d4933ee294b960aacd501767694feee3900ec323f091504a383b (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.5), version: 47.3.2
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2024-10-11T23:23:12,458     Found link https://www.piwheels.org/simple/setuptools/setuptools-46.3.0-py3-none-any.whl#sha256=c5ea7a129a2875dc5f9eb2cf335d7b4b98777153b5be9ef63ceb30193b38f8a0 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.5), version: 46.3.0
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2024-10-11T23:23:12,463     Found link https://www.piwheels.org/simple/setuptools/setuptools-46.1.1-py3-none-any.whl#sha256=935dcf0e5f967f84187d9abf6f1ba2d8b2e791ae25f915cb43a2e44d21421758 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.5), version: 46.1.1
2024-10-11T23:23:12,464     Found link https://www.piwheels.org/simple/setuptools/setuptools-46.1.0-py3-none-any.whl#sha256=55453a174d4ebe609240ce8e459e993b6e075ca992cb2db014e442ccb9ce0ec0 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.5), version: 46.1.0
2024-10-11T23:23:12,466     Found link https://www.piwheels.org/simple/setuptools/setuptools-46.0.0-py3-none-any.whl#sha256=693e0504490ed8420522bf6bc3aa4b0da6a9f1c80c68acfb4e959275fd04cd82 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.5), version: 46.0.0
2024-10-11T23:23:12,467     Found link https://www.piwheels.org/simple/setuptools/setuptools-45.3.0-py3-none-any.whl#sha256=2200fd1d64496f6dd0a43f25e259cffcf13305a350e0583273fe4008c06e1ef1 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.5), version: 45.3.0
2024-10-11T23:23:12,468     Found link https://www.piwheels.org/simple/setuptools/setuptools-45.2.0-py3-none-any.whl#sha256=316484eebff54cc18f322dea09ed031b7e3eb00811b19dcedb09bc09bba7d93d (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.5), version: 45.2.0
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2024-10-11T23:23:12,472     Found link https://www.piwheels.org/simple/setuptools/setuptools-44.1.1-py2.py3-none-any.whl#sha256=27a714c09253134e60a6fa68130f78c7037e5562c4f21f8f318f2ae900d152d5 (from https://www.piwheels.org/simple/setuptools/) (requires-python:!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7), version: 44.1.1
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2024-10-11T23:23:12,491     Found link https://www.piwheels.org/simple/setuptools/setuptools-41.5.0-py2.py3-none-any.whl#sha256=1aaf68966c16fe31be9a87f7c02f4393355159bf96396068f380b70b1fc6860d (from https://www.piwheels.org/simple/setuptools/) (requires-python:!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7), version: 41.5.0
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2024-10-11T23:23:13,214     Found index url https://www.piwheels.org/simple/
2024-10-11T23:23:13,216     Looking up "https://www.piwheels.org/simple/setuptools/setuptools-75.1.0-py3-none-any.whl" in the cache
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2024-10-11T23:23:13,367   Created temporary directory: /tmp/pip-unpack-yzeyfz9c
2024-10-11T23:23:14,063   Installing collected packages: setuptools

2024-10-11T23:23:17,494   Successfully installed setuptools-75.1.0
2024-10-11T23:23:17,495   Removed build tracker: '/tmp/pip-build-tracker-llen406n'
2024-10-11T23:23:17,707   Installing build dependencies: finished with status 'done'
2024-10-11T23:23:17,712   Getting requirements to build wheel: started
2024-10-11T23:23:17,713   Running command Getting requirements to build wheel
2024-10-11T23:23:18,645   running egg_info
2024-10-11T23:23:18,655   writing ViennaRNA.egg-info/PKG-INFO
2024-10-11T23:23:18,659   writing dependency_links to ViennaRNA.egg-info/dependency_links.txt
2024-10-11T23:23:18,661   writing top-level names to ViennaRNA.egg-info/top_level.txt
2024-10-11T23:23:18,694   reading manifest file 'ViennaRNA.egg-info/SOURCES.txt'
2024-10-11T23:23:19,000   reading manifest template 'MANIFEST.in'
2024-10-11T23:23:20,540   adding license file 'COPYING'
2024-10-11T23:23:20,540   adding license file 'AUTHORS'
2024-10-11T23:23:20,664   writing manifest file 'ViennaRNA.egg-info/SOURCES.txt'
2024-10-11T23:23:20,761   Getting requirements to build wheel: finished with status 'done'
2024-10-11T23:23:20,765   Created temporary directory: /tmp/pip-modern-metadata-g3izv_ro
2024-10-11T23:23:20,767   Preparing metadata (pyproject.toml): started
2024-10-11T23:23:20,768   Running command Preparing metadata (pyproject.toml)
2024-10-11T23:23:21,621   running dist_info
2024-10-11T23:23:21,629   creating /tmp/pip-modern-metadata-g3izv_ro/ViennaRNA.egg-info
2024-10-11T23:23:21,636   writing /tmp/pip-modern-metadata-g3izv_ro/ViennaRNA.egg-info/PKG-INFO
2024-10-11T23:23:21,640   writing dependency_links to /tmp/pip-modern-metadata-g3izv_ro/ViennaRNA.egg-info/dependency_links.txt
2024-10-11T23:23:21,642   writing top-level names to /tmp/pip-modern-metadata-g3izv_ro/ViennaRNA.egg-info/top_level.txt
2024-10-11T23:23:21,643   writing manifest file '/tmp/pip-modern-metadata-g3izv_ro/ViennaRNA.egg-info/SOURCES.txt'
2024-10-11T23:23:21,675   reading manifest file '/tmp/pip-modern-metadata-g3izv_ro/ViennaRNA.egg-info/SOURCES.txt'
2024-10-11T23:23:21,677   reading manifest template 'MANIFEST.in'
2024-10-11T23:23:23,162   adding license file 'COPYING'
2024-10-11T23:23:23,162   adding license file 'AUTHORS'
2024-10-11T23:23:23,242   writing manifest file '/tmp/pip-modern-metadata-g3izv_ro/ViennaRNA.egg-info/SOURCES.txt'
2024-10-11T23:23:23,245   creating '/tmp/pip-modern-metadata-g3izv_ro/ViennaRNA-2.7.0.dist-info'
2024-10-11T23:23:23,369   Preparing metadata (pyproject.toml): finished with status 'done'
2024-10-11T23:23:23,377   Source in /tmp/pip-wheel-3q5uo923/viennarna_a8fbc41e601a4f2a8f28d2e4b4acaa1a has version 2.7.0, which satisfies requirement viennarna==2.7.0 from https://files.pythonhosted.org/packages/86/94/c65cfb4666efed90fc0fc241ee646054c5f1f7d16e83a39ab43ce7dfbe35/viennarna-2.7.0.tar.gz
2024-10-11T23:23:23,377   Removed viennarna==2.7.0 from https://files.pythonhosted.org/packages/86/94/c65cfb4666efed90fc0fc241ee646054c5f1f7d16e83a39ab43ce7dfbe35/viennarna-2.7.0.tar.gz from build tracker '/tmp/pip-build-tracker-llen406n'
2024-10-11T23:23:23,386 Created temporary directory: /tmp/pip-unpack-o0udus0x
2024-10-11T23:23:23,387 Created temporary directory: /tmp/pip-unpack-pl98pmdh
2024-10-11T23:23:23,388 Building wheels for collected packages: viennarna
2024-10-11T23:23:23,392   Created temporary directory: /tmp/pip-wheel-g3ilu69v
2024-10-11T23:23:23,392   Destination directory: /tmp/pip-wheel-g3ilu69v
2024-10-11T23:23:23,394   Building wheel for viennarna (pyproject.toml): started
2024-10-11T23:23:23,395   Running command Building wheel for viennarna (pyproject.toml)
2024-10-11T23:23:24,186   running bdist_wheel
2024-10-11T23:23:24,212   running build
2024-10-11T23:23:24,213   running build_py
2024-10-11T23:23:24,223   creating build/lib.linux-armv7l-cpython-39/RNA
2024-10-11T23:23:24,225   copying interfaces/Python/RNA/__init__.py -> build/lib.linux-armv7l-cpython-39/RNA
2024-10-11T23:23:24,227   copying interfaces/Python/RNA/RNA.py -> build/lib.linux-armv7l-cpython-39/RNA
2024-10-11T23:23:24,239   creating build/lib.linux-armv7l-cpython-39/ViennaRNA
2024-10-11T23:23:24,240   copying interfaces/Python/ViennaRNA/__init__.py -> build/lib.linux-armv7l-cpython-39/ViennaRNA
2024-10-11T23:23:24,243   running egg_info
2024-10-11T23:23:24,250   writing ViennaRNA.egg-info/PKG-INFO
2024-10-11T23:23:24,253   writing dependency_links to ViennaRNA.egg-info/dependency_links.txt
2024-10-11T23:23:24,254   writing top-level names to ViennaRNA.egg-info/top_level.txt
2024-10-11T23:23:24,269   reading manifest file 'ViennaRNA.egg-info/SOURCES.txt'
2024-10-11T23:23:24,381   reading manifest template 'MANIFEST.in'
2024-10-11T23:23:25,859   adding license file 'COPYING'
2024-10-11T23:23:25,859   adding license file 'AUTHORS'
2024-10-11T23:23:25,982   writing manifest file 'ViennaRNA.egg-info/SOURCES.txt'
2024-10-11T23:23:26,087   running build_ext
2024-10-11T23:23:26,094   building 'RNA._RNA' extension
2024-10-11T23:23:26,099   creating build/temp.linux-armv7l-cpython-39/interfaces/Python
2024-10-11T23:23:26,101   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA
2024-10-11T23:23:26,103   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/backtrack
2024-10-11T23:23:26,105   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/combinatorics
2024-10-11T23:23:26,106   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints
2024-10-11T23:23:26,108   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures
2024-10-11T23:23:26,110   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval
2024-10-11T23:23:26,113   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/grammar
2024-10-11T23:23:26,114   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/inverse
2024-10-11T23:23:26,115   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io
2024-10-11T23:23:26,117   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape
2024-10-11T23:23:26,119   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe
2024-10-11T23:23:26,121   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params
2024-10-11T23:23:26,123   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/partfunc
2024-10-11T23:23:26,125   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/RNApuzzler
2024-10-11T23:23:26,128   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/naview
2024-10-11T23:23:26,130   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/probabilities
2024-10-11T23:23:26,131   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/probing
2024-10-11T23:23:26,132   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/sampling
2024-10-11T23:23:26,133   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/search
2024-10-11T23:23:26,134   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/sequences
2024-10-11T23:23:26,136   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/structures
2024-10-11T23:23:26,138   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/subopt
2024-10-11T23:23:26,140   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils
2024-10-11T23:23:26,142   creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/zscore
2024-10-11T23:23:26,143   creating build/temp.linux-armv7l-cpython-39/src/cephes
2024-10-11T23:23:26,144   creating build/temp.linux-armv7l-cpython-39/src/json
2024-10-11T23:23:26,145   creating build/temp.linux-armv7l-cpython-39/src/libsvm-3.35
2024-10-11T23:23:26,146   arm-linux-gnueabihf-g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c interfaces/Python/RNA_wrap.cpp -o build/temp.linux-armv7l-cpython-39/interfaces/Python/RNA_wrap.o -fopenmp
2024-10-11T23:23:36,085   interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned char var_array_Sl_unsigned_SS_char_Sg__get(const var_array<unsigned char>*, int)’:
2024-10-11T23:23:36,086   interfaces/Python/RNA_wrap.cpp:7415:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:23:36,086    7415 |     if (((i < 0) && (-i >= max_i)) ||
2024-10-11T23:23:36,086         |                      ~~~^~~~~~~~
2024-10-11T23:23:36,086   interfaces/Python/RNA_wrap.cpp:7416:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:23:36,087    7416 |         ((i >= 0) && (i >= max_i)))
2024-10-11T23:23:36,087         |                       ~~^~~~~~~~
2024-10-11T23:23:36,108   interfaces/Python/RNA_wrap.cpp: In function ‘const char var_array_Sl_char_Sg__get(const var_array<char>*, int)’:
2024-10-11T23:23:36,108   interfaces/Python/RNA_wrap.cpp:7628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:23:36,108    7628 |     if (((i < 0) && (-i >= max_i)) ||
2024-10-11T23:23:36,108         |                      ~~~^~~~~~~~
2024-10-11T23:23:36,109   interfaces/Python/RNA_wrap.cpp:7629:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:23:36,109    7629 |         ((i >= 0) && (i >= max_i)))
2024-10-11T23:23:36,109         |                       ~~^~~~~~~~
2024-10-11T23:23:36,135   interfaces/Python/RNA_wrap.cpp: In function ‘const short int var_array_Sl_short_Sg__get(const var_array<short int>*, int)’:
2024-10-11T23:23:36,135   interfaces/Python/RNA_wrap.cpp:7818:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:23:36,135    7818 |     if (((i < 0) && (-i >= max_i)) ||
2024-10-11T23:23:36,135         |                      ~~~^~~~~~~~
2024-10-11T23:23:36,135   interfaces/Python/RNA_wrap.cpp:7819:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:23:36,135    7819 |         ((i >= 0) && (i >= max_i)))
2024-10-11T23:23:36,136         |                       ~~^~~~~~~~
2024-10-11T23:23:36,150   interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned int var_array_Sl_unsigned_SS_int_Sg__get(const var_array<unsigned int>*, int)’:
2024-10-11T23:23:36,151   interfaces/Python/RNA_wrap.cpp:8031:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:23:36,151    8031 |     if (((i < 0) && (-i >= max_i)) ||
2024-10-11T23:23:36,151         |                      ~~~^~~~~~~~
2024-10-11T23:23:36,151   interfaces/Python/RNA_wrap.cpp:8032:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:23:36,151    8032 |         ((i >= 0) && (i >= max_i)))
2024-10-11T23:23:36,151         |                       ~~^~~~~~~~
2024-10-11T23:23:36,161   interfaces/Python/RNA_wrap.cpp: In function ‘const int var_array_Sl_int_Sg__get(const var_array<int>*, int)’:
2024-10-11T23:23:36,161   interfaces/Python/RNA_wrap.cpp:8221:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:23:36,161    8221 |     if (((i < 0) && (-i >= max_i)) ||
2024-10-11T23:23:36,162         |                      ~~~^~~~~~~~
2024-10-11T23:23:36,162   interfaces/Python/RNA_wrap.cpp:8222:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:23:36,162    8222 |         ((i >= 0) && (i >= max_i)))
2024-10-11T23:23:36,162         |                       ~~^~~~~~~~
2024-10-11T23:23:36,173   interfaces/Python/RNA_wrap.cpp: In function ‘const FLT_OR_DBL var_array_Sl_FLT_OR_DBL_Sg__get(const var_array<double>*, int)’:
2024-10-11T23:23:36,173   interfaces/Python/RNA_wrap.cpp:8411:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:23:36,173    8411 |     if (((i < 0) && (-i >= max_i)) ||
2024-10-11T23:23:36,173         |                      ~~~^~~~~~~~
2024-10-11T23:23:36,174   interfaces/Python/RNA_wrap.cpp:8412:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:23:36,174    8412 |         ((i >= 0) && (i >= max_i)))
2024-10-11T23:23:36,174         |                       ~~^~~~~~~~
2024-10-11T23:23:36,186   interfaces/Python/RNA_wrap.cpp: In function ‘const vrna_move_t var_array_Sl_vrna_move_t_Sg__get(const var_array<vrna_move_s>*, int)’:
2024-10-11T23:23:36,187   interfaces/Python/RNA_wrap.cpp:8601:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:23:36,187    8601 |     if (((i < 0) && (-i >= max_i)) ||
2024-10-11T23:23:36,187         |                      ~~~^~~~~~~~
2024-10-11T23:23:36,187   interfaces/Python/RNA_wrap.cpp:8602:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:23:36,187    8602 |         ((i >= 0) && (i >= max_i)))
2024-10-11T23:23:36,187         |                       ~~^~~~~~~~
2024-10-11T23:23:36,258   interfaces/Python/RNA_wrap.cpp: In function ‘var_array<short int>* my_ptable(std::string, unsigned int)’:
2024-10-11T23:23:36,258   interfaces/Python/RNA_wrap.cpp:9126:21: warning: unused variable ‘i’ [-Wunused-variable]
2024-10-11T23:23:36,259    9126 |     int             i;
2024-10-11T23:23:36,259         |                     ^
2024-10-11T23:23:36,260   interfaces/Python/RNA_wrap.cpp: In function ‘std::vector<int, std::allocator<int> > my_pt_pk_remove(std::vector<int, std::allocator<int> >, unsigned int)’:
2024-10-11T23:23:36,260   interfaces/Python/RNA_wrap.cpp:9180:15: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:23:36,260    9180 |     if (pt[0] != pt.size() - 1)
2024-10-11T23:23:36,269   interfaces/Python/RNA_wrap.cpp: In function ‘std::vector<int, std::allocator<int> > my_loopidx_from_ptable(std::vector<int, std::allocator<int> >)’:
2024-10-11T23:23:36,270   interfaces/Python/RNA_wrap.cpp:9332:25: warning: unused variable ‘i’ [-Wunused-variable]
2024-10-11T23:23:36,270    9332 |     int                 i, *idx;
2024-10-11T23:23:36,270         |                         ^
2024-10-11T23:23:36,326   interfaces/Python/RNA_wrap.cpp: In function ‘vrna_probing_data_s* new_vrna_probing_data_s__SWIG_1(std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >, std::vector<double, std::allocator<double> >, std::vector<double, std::allocator<double> >)’:
2024-10-11T23:23:36,326   interfaces/Python/RNA_wrap.cpp:10535:31: warning: unused variable ‘n_seq’ [-Wunused-variable]
2024-10-11T23:23:36,326   10535 |     unsigned int              n_seq = reactivities.size();
2024-10-11T23:23:36,326         |                               ^~~~~
2024-10-11T23:23:36,331   interfaces/Python/RNA_wrap.cpp: In function ‘vrna_probing_data_s* new_vrna_probing_data_s__SWIG_3(std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >, std::vector<double, std::allocator<double> >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<double, std::allocator<double> >)’:
2024-10-11T23:23:36,331   interfaces/Python/RNA_wrap.cpp:10580:31: warning: unused variable ‘n_seq’ [-Wunused-variable]
2024-10-11T23:23:36,331   10580 |     unsigned int              n_seq = reactivities.size();
2024-10-11T23:23:36,331         |                               ^~~~~
2024-10-11T23:23:36,338   interfaces/Python/RNA_wrap.cpp: In function ‘vrna_probing_data_s* probing_data_Zarringhalam2012_comparative(std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >, std::vector<double, std::allocator<double> >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<double, std::allocator<double> >, unsigned int)’:
2024-10-11T23:23:36,338   interfaces/Python/RNA_wrap.cpp:10715:31: warning: unused variable ‘n_seq’ [-Wunused-variable]
2024-10-11T23:23:36,338   10715 |     unsigned int              n_seq = reactivities.size();
2024-10-11T23:23:36,339         |                               ^~~~~
2024-10-11T23:23:36,356   interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, float*)’:
2024-10-11T23:23:36,356   interfaces/Python/RNA_wrap.cpp:11099:11: warning: unused variable ‘s’ [-Wunused-variable]
2024-10-11T23:23:36,356   11099 |     char *s, **tok, **ptr, *struc, *sequence;
2024-10-11T23:23:36,357         |           ^
2024-10-11T23:23:36,359   interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, char*, float*)’:
2024-10-11T23:23:36,359   interfaces/Python/RNA_wrap.cpp:11150:11: warning: unused variable ‘s’ [-Wunused-variable]
2024-10-11T23:23:36,360   11150 |     char *s, **tok, **ptr, *struc, *sequence;
2024-10-11T23:23:36,360         |           ^
2024-10-11T23:23:36,367   interfaces/Python/RNA_wrap.cpp: In function ‘double my_pf_add(double, double, double)’:
2024-10-11T23:23:36,367   interfaces/Python/RNA_wrap.cpp:11403:12: warning: unused variable ‘result’ [-Wunused-variable]
2024-10-11T23:23:36,367   11403 |     double result = 0;
2024-10-11T23:23:36,368         |            ^~~~~~
2024-10-11T23:23:36,419   interfaces/Python/RNA_wrap.cpp: In function ‘vrna_command_s* my_file_commands_read(std::string, unsigned int)’:
2024-10-11T23:23:36,419   interfaces/Python/RNA_wrap.cpp:12170:9: warning: unused variable ‘i’ [-Wunused-variable]
2024-10-11T23:23:36,419   12170 |     int i;
2024-10-11T23:23:36,420         |         ^
2024-10-11T23:23:36,515   interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_sc_f_callback(int, int, int, int, unsigned char, void*)’:
2024-10-11T23:23:36,516   interfaces/Python/RNA_wrap.cpp:13546:31: warning: unused variable ‘arglist’ [-Wunused-variable]
2024-10-11T23:23:36,516   13546 |     PyObject          *func, *arglist, *result, *err;
2024-10-11T23:23:36,516         |                               ^~~~~~~
2024-10-11T23:23:36,520   interfaces/Python/RNA_wrap.cpp: In function ‘vrna_basepair_t* py_wrap_sc_bt_callback(int, int, int, int, unsigned char, void*)’:
2024-10-11T23:23:36,520   interfaces/Python/RNA_wrap.cpp:13618:31: warning: unused variable ‘arglist’ [-Wunused-variable]
2024-10-11T23:23:36,521   13618 |     PyObject          *func, *arglist, *result, *bp, *err;
2024-10-11T23:23:36,521         |                               ^~~~~~~
2024-10-11T23:23:36,523   interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_sc_exp_f_callback(int, int, int, int, unsigned char, void*)’:
2024-10-11T23:23:36,523   interfaces/Python/RNA_wrap.cpp:13737:31: warning: unused variable ‘arglist’ [-Wunused-variable]
2024-10-11T23:23:36,523   13737 |     PyObject          *func, *arglist, *result, *err;
2024-10-11T23:23:36,523         |                               ^~~~~~~
2024-10-11T23:23:36,532   interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_ud_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’:
2024-10-11T23:23:36,533   interfaces/Python/RNA_wrap.cpp:14177:29: warning: unused variable ‘arglist’ [-Wunused-variable]
2024-10-11T23:23:36,533   14177 |   PyObject          *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype;
2024-10-11T23:23:36,533         |                             ^~~~~~~
2024-10-11T23:23:36,535   interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_exp_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’:
2024-10-11T23:23:36,535   interfaces/Python/RNA_wrap.cpp:14237:29: warning: unused variable ‘arglist’ [-Wunused-variable]
2024-10-11T23:23:36,535   14237 |   PyObject          *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype;
2024-10-11T23:23:36,536         |                             ^~~~~~~
2024-10-11T23:23:36,537   interfaces/Python/RNA_wrap.cpp: In function ‘void py_wrap_ud_prob_add(vrna_fold_compound_t*, int, int, unsigned int, FLT_OR_DBL, void*)’:
2024-10-11T23:23:36,538   interfaces/Python/RNA_wrap.cpp:14297:29: warning: unused variable ‘arglist’ [-Wunused-variable]
2024-10-11T23:23:36,538   14297 |   PyObject          *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_prob;
2024-10-11T23:23:36,538         |                             ^~~~~~~
2024-10-11T23:23:36,540   interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_prob_get(vrna_fold_compound_t*, int, int, unsigned int, int, void*)’:
2024-10-11T23:23:36,541   interfaces/Python/RNA_wrap.cpp:14356:29: warning: unused variable ‘arglist’ [-Wunused-variable]
2024-10-11T23:23:36,541   14356 |   PyObject          *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_motif;
2024-10-11T23:23:36,541         |                             ^~~~~~~
2024-10-11T23:23:36,543   interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_subopt_cb(const char*, float, void*)’:
2024-10-11T23:23:36,543   interfaces/Python/RNA_wrap.cpp:14458:37: warning: unused variable ‘arglist’ [-Wunused-variable]
2024-10-11T23:23:36,544   14458 |   PyObject                  *func, *arglist, *result, *err, *py_structure, *py_energy;
2024-10-11T23:23:36,544         |                                     ^~~~~~~
2024-10-11T23:23:36,546   interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_bs_cb(const char*, void*)’:
2024-10-11T23:23:36,546   interfaces/Python/RNA_wrap.cpp:14544:20: warning: unused variable ‘arglist’ [-Wunused-variable]
2024-10-11T23:23:36,546   14544 |   PyObject *func, *arglist, *result, *err;
2024-10-11T23:23:36,546         |                    ^~~~~~~
2024-10-11T23:23:36,547   interfaces/Python/RNA_wrap.cpp:14549:28: warning: unused variable ‘py_energy’ [-Wunused-variable]
2024-10-11T23:23:36,547   14549 |   PyObject *py_structure, *py_energy;
2024-10-11T23:23:36,547         |                            ^~~~~~~~~
2024-10-11T23:23:36,549   interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_cb(unsigned int, unsigned int, const char*, float, void*)’:
2024-10-11T23:23:36,550   interfaces/Python/RNA_wrap.cpp:14643:20: warning: unused variable ‘arglist’ [-Wunused-variable]
2024-10-11T23:23:36,550   14643 |   PyObject *func, *arglist, *result, *err;
2024-10-11T23:23:36,550         |                    ^~~~~~~
2024-10-11T23:23:36,552   interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_zscore_cb(unsigned int, unsigned int, const char*, float, float, void*)’:
2024-10-11T23:23:36,552   interfaces/Python/RNA_wrap.cpp:14697:20: warning: unused variable ‘arglist’ [-Wunused-variable]
2024-10-11T23:23:36,552   14697 |   PyObject *func, *arglist, *result, *err;
2024-10-11T23:23:36,552         |                    ^~~~~~~
2024-10-11T23:23:36,557   interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_pf_window_cb(FLT_OR_DBL*, int, int, int, unsigned int, void*)’:
2024-10-11T23:23:36,557   interfaces/Python/RNA_wrap.cpp:14849:20: warning: unused variable ‘arglist’ [-Wunused-variable]
2024-10-11T23:23:36,557   14849 |   PyObject *func, *arglist, *result, *pr_list, *err;
2024-10-11T23:23:36,557         |                    ^~~~~~~
2024-10-11T23:23:36,560   interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_heat_capacity_cb(float, float, void*)’:
2024-10-11T23:23:36,560   interfaces/Python/RNA_wrap.cpp:15008:43: warning: unused variable ‘arglist’ [-Wunused-variable]
2024-10-11T23:23:36,560   15008 |   PyObject                        *func, *arglist, *result, *err, *py_temp, *py_hc;
2024-10-11T23:23:36,561         |                                           ^~~~~~~
2024-10-11T23:23:36,563   interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_move_update_cb(vrna_fold_compound_t*, vrna_move_t, unsigned int, void*)’:
2024-10-11T23:23:36,563   interfaces/Python/RNA_wrap.cpp:15102:31: warning: unused variable ‘arglist’ [-Wunused-variable]
2024-10-11T23:23:36,563   15102 |   PyObject            *func, *arglist, *result, *err, *py_fc, *py_neighbor, *py_state;
2024-10-11T23:23:36,563         |                               ^~~~~~~
2024-10-11T23:23:36,567   interfaces/Python/RNA_wrap.cpp: In function ‘int sc_multi_cb_add_pycallback(vrna_fold_compound_t*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, unsigned int)’:
2024-10-11T23:23:36,567   interfaces/Python/RNA_wrap.cpp:15255:23: warning: unused variable ‘func_is_tuple’ [-Wunused-variable]
2024-10-11T23:23:36,567   15255 |     unsigned char     func_is_tuple, func_is_list;
2024-10-11T23:23:36,567         |                       ^~~~~~~~~~~~~
2024-10-11T23:23:36,568   interfaces/Python/RNA_wrap.cpp:15255:38: warning: unused variable ‘func_is_list’ [-Wunused-variable]
2024-10-11T23:23:36,568   15255 |     unsigned char     func_is_tuple, func_is_list;
2024-10-11T23:23:36,568         |                                      ^~~~~~~~~~~~
2024-10-11T23:23:36,568   interfaces/Python/RNA_wrap.cpp:15256:23: warning: unused variable ‘s’ [-Wunused-variable]
2024-10-11T23:23:36,568   15256 |     unsigned int      s;
2024-10-11T23:23:36,568         |                       ^
2024-10-11T23:23:36,570   interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_sc_direct_f_callback(vrna_fold_compound_t*, int, int, int, int, void*)’:
2024-10-11T23:23:36,570   interfaces/Python/RNA_wrap.cpp:15320:31: warning: unused variable ‘arglist’ [-Wunused-variable]
2024-10-11T23:23:36,571   15320 |     PyObject          *func, *arglist, *result, *err;
2024-10-11T23:23:36,571         |                               ^~~~~~~
2024-10-11T23:23:36,573   interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_sc_direct_exp_f_callback(vrna_fold_compound_t*, int, int, int, int, void*)’:
2024-10-11T23:23:36,573   interfaces/Python/RNA_wrap.cpp:15395:31: warning: unused variable ‘arglist’ [-Wunused-variable]
2024-10-11T23:23:36,573   15395 |     PyObject          *func, *arglist, *result, *err;
2024-10-11T23:23:36,573         |                               ^~~~~~~
2024-10-11T23:23:36,575   interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_sc_direct_data_prepare_callback(vrna_fold_compound_t*, void*, unsigned int, void*)’:
2024-10-11T23:23:36,576   interfaces/Python/RNA_wrap.cpp:15467:31: warning: unused variable ‘arglist’ [-Wunused-variable]
2024-10-11T23:23:36,576   15467 |     PyObject          *func, *arglist, *result, *err;
2024-10-11T23:23:36,576         |                               ^~~~~~~
2024-10-11T23:23:36,601   interfaces/Python/RNA_wrap.cpp: In function ‘double vrna_fold_compound_t_exp_E_ext_stem(vrna_fold_compound_t*, int, int)’:
2024-10-11T23:23:36,601   interfaces/Python/RNA_wrap.cpp:15861:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:23:36,601   15861 |     if (j < self->length)
2024-10-11T23:23:36,602         |         ~~^~~~~~~~~~~~~~
2024-10-11T23:23:36,628   interfaces/Python/RNA_wrap.cpp: In function ‘std::vector<vrna_move_s, std::allocator<vrna_move_s> > vrna_fold_compound_t_path__SWIG_1(vrna_fold_compound_t*, var_array<short int>&, unsigned int, unsigned int)’:
2024-10-11T23:23:36,628   interfaces/Python/RNA_wrap.cpp:16311:9: warning: unused variable ‘i’ [-Wunused-variable]
2024-10-11T23:23:36,628   16311 |     int i;
2024-10-11T23:23:36,628         |         ^
2024-10-11T23:23:36,632   interfaces/Python/RNA_wrap.cpp: In function ‘std::vector<vrna_move_s, std::allocator<vrna_move_s> > vrna_fold_compound_t_path_gradient__SWIG_1(vrna_fold_compound_t*, var_array<short int>&, unsigned int)’:
2024-10-11T23:23:36,632   interfaces/Python/RNA_wrap.cpp:16355:9: warning: unused variable ‘i’ [-Wunused-variable]
2024-10-11T23:23:36,632   16355 |     int i;
2024-10-11T23:23:36,632         |         ^
2024-10-11T23:23:36,636   interfaces/Python/RNA_wrap.cpp: In function ‘std::vector<vrna_move_s, std::allocator<vrna_move_s> > vrna_fold_compound_t_path_random__SWIG_1(vrna_fold_compound_t*, var_array<short int>&, unsigned int, unsigned int)’:
2024-10-11T23:23:36,636   interfaces/Python/RNA_wrap.cpp:16399:9: warning: unused variable ‘i’ [-Wunused-variable]
2024-10-11T23:23:36,636   16399 |     int i;
2024-10-11T23:23:36,636         |         ^
2024-10-11T23:23:38,568   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_temperature_set(PyObject*)’:
2024-10-11T23:23:38,568   interfaces/Python/RNA_wrap.cpp:59592:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,568   59592 | fail:
2024-10-11T23:23:38,568         | ^~~~
2024-10-11T23:23:38,569   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_dangles_set(PyObject*)’:
2024-10-11T23:23:38,569   interfaces/Python/RNA_wrap.cpp:59612:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,569   59612 | fail:
2024-10-11T23:23:38,569         | ^~~~
2024-10-11T23:23:38,569   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_betaScale_set(PyObject*)’:
2024-10-11T23:23:38,569   interfaces/Python/RNA_wrap.cpp:59632:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,570   59632 | fail:
2024-10-11T23:23:38,570         | ^~~~
2024-10-11T23:23:38,570   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_pf_smooth_set(PyObject*)’:
2024-10-11T23:23:38,570   interfaces/Python/RNA_wrap.cpp:59652:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,570   59652 | fail:
2024-10-11T23:23:38,570         | ^~~~
2024-10-11T23:23:38,571   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_tetra_loop_set(PyObject*)’:
2024-10-11T23:23:38,571   interfaces/Python/RNA_wrap.cpp:59672:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,571   59672 | fail:
2024-10-11T23:23:38,571         | ^~~~
2024-10-11T23:23:38,571   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_special_hp_set(PyObject*)’:
2024-10-11T23:23:38,572   interfaces/Python/RNA_wrap.cpp:59692:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,572   59692 | fail:
2024-10-11T23:23:38,572         | ^~~~
2024-10-11T23:23:38,572   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLonelyPairs_set(PyObject*)’:
2024-10-11T23:23:38,572   interfaces/Python/RNA_wrap.cpp:59712:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,573   59712 | fail:
2024-10-11T23:23:38,573         | ^~~~
2024-10-11T23:23:38,573   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLP_set(PyObject*)’:
2024-10-11T23:23:38,573   interfaces/Python/RNA_wrap.cpp:59732:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,573   59732 | fail:
2024-10-11T23:23:38,573         | ^~~~
2024-10-11T23:23:38,574   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGU_set(PyObject*)’:
2024-10-11T23:23:38,574   interfaces/Python/RNA_wrap.cpp:59752:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,574   59752 | fail:
2024-10-11T23:23:38,574         | ^~~~
2024-10-11T23:23:38,575   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_no_closingGU_set(PyObject*)’:
2024-10-11T23:23:38,575   interfaces/Python/RNA_wrap.cpp:59772:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,575   59772 | fail:
2024-10-11T23:23:38,575         | ^~~~
2024-10-11T23:23:38,575   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGUclosure_set(PyObject*)’:
2024-10-11T23:23:38,576   interfaces/Python/RNA_wrap.cpp:59792:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,576   59792 | fail:
2024-10-11T23:23:38,576         | ^~~~
2024-10-11T23:23:38,576   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_logML_set(PyObject*)’:
2024-10-11T23:23:38,576   interfaces/Python/RNA_wrap.cpp:59812:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,577   59812 | fail:
2024-10-11T23:23:38,577         | ^~~~
2024-10-11T23:23:38,577   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_circ_set(PyObject*)’:
2024-10-11T23:23:38,577   interfaces/Python/RNA_wrap.cpp:59832:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,577   59832 | fail:
2024-10-11T23:23:38,578         | ^~~~
2024-10-11T23:23:38,578   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_circ_penalty_set(PyObject*)’:
2024-10-11T23:23:38,578   interfaces/Python/RNA_wrap.cpp:59852:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,578   59852 | fail:
2024-10-11T23:23:38,578         | ^~~~
2024-10-11T23:23:38,579   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_gquad_set(PyObject*)’:
2024-10-11T23:23:38,579   interfaces/Python/RNA_wrap.cpp:59872:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,579   59872 | fail:
2024-10-11T23:23:38,579         | ^~~~
2024-10-11T23:23:38,580   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_uniq_ML_set(PyObject*)’:
2024-10-11T23:23:38,580   interfaces/Python/RNA_wrap.cpp:59892:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,580   59892 | fail:
2024-10-11T23:23:38,580         | ^~~~
2024-10-11T23:23:38,580   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_energy_set_set(PyObject*)’:
2024-10-11T23:23:38,581   interfaces/Python/RNA_wrap.cpp:59912:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,581   59912 | fail:
2024-10-11T23:23:38,581         | ^~~~
2024-10-11T23:23:38,581   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_backtrack_set(PyObject*)’:
2024-10-11T23:23:38,582   interfaces/Python/RNA_wrap.cpp:59932:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,582   59932 | fail:
2024-10-11T23:23:38,582         | ^~~~
2024-10-11T23:23:38,583   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_do_backtrack_set(PyObject*)’:
2024-10-11T23:23:38,583   interfaces/Python/RNA_wrap.cpp:59975:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,583   59975 | fail:
2024-10-11T23:23:38,583         | ^~~~
2024-10-11T23:23:38,584   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_compute_bpp_set(PyObject*)’:
2024-10-11T23:23:38,584   interfaces/Python/RNA_wrap.cpp:59995:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,584   59995 | fail:
2024-10-11T23:23:38,584         | ^~~~
2024-10-11T23:23:38,585   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_max_bp_span_set(PyObject*)’:
2024-10-11T23:23:38,585   interfaces/Python/RNA_wrap.cpp:60015:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,585   60015 | fail:
2024-10-11T23:23:38,585         | ^~~~
2024-10-11T23:23:38,586   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_min_loop_size_set(PyObject*)’:
2024-10-11T23:23:38,586   interfaces/Python/RNA_wrap.cpp:60035:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,586   60035 | fail:
2024-10-11T23:23:38,586         | ^~~~
2024-10-11T23:23:38,586   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_window_size_set(PyObject*)’:
2024-10-11T23:23:38,587   interfaces/Python/RNA_wrap.cpp:60055:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,587   60055 | fail:
2024-10-11T23:23:38,587         | ^~~~
2024-10-11T23:23:38,588   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_ribo_set(PyObject*)’:
2024-10-11T23:23:38,588   interfaces/Python/RNA_wrap.cpp:60098:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,588   60098 | fail:
2024-10-11T23:23:38,589         | ^~~~
2024-10-11T23:23:38,589   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_cv_fact_set(PyObject*)’:
2024-10-11T23:23:38,589   interfaces/Python/RNA_wrap.cpp:60118:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,589   60118 | fail:
2024-10-11T23:23:38,589         | ^~~~
2024-10-11T23:23:38,590   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_nc_fact_set(PyObject*)’:
2024-10-11T23:23:38,590   interfaces/Python/RNA_wrap.cpp:60138:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,590   60138 | fail:
2024-10-11T23:23:38,590         | ^~~~
2024-10-11T23:23:38,591   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_sfact_set(PyObject*)’:
2024-10-11T23:23:38,591   interfaces/Python/RNA_wrap.cpp:60158:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,591   60158 | fail:
2024-10-11T23:23:38,591         | ^~~~
2024-10-11T23:23:38,592   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_salt_set(PyObject*)’:
2024-10-11T23:23:38,592   interfaces/Python/RNA_wrap.cpp:60178:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,592   60178 | fail:
2024-10-11T23:23:38,592         | ^~~~
2024-10-11T23:23:38,593   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInit_set(PyObject*)’:
2024-10-11T23:23:38,593   interfaces/Python/RNA_wrap.cpp:60198:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,593   60198 | fail:
2024-10-11T23:23:38,593         | ^~~~
2024-10-11T23:23:38,593   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInitFact_set(PyObject*)’:
2024-10-11T23:23:38,594   interfaces/Python/RNA_wrap.cpp:60218:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:38,594   60218 | fail:
2024-10-11T23:23:38,594         | ^~~~
2024-10-11T23:23:39,513   interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_symbolset_set(PyObject*)’:
2024-10-11T23:23:39,514   interfaces/Python/RNA_wrap.cpp:80721:1: warning: label ‘fail’ defined but not used [-Wunused-label]
2024-10-11T23:23:39,514   80721 | fail:
2024-10-11T23:23:39,514         | ^~~~
2024-10-11T23:23:40,165   interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’:
2024-10-11T23:23:40,165   interfaces/Python/RNA_wrap.cpp:95827:19: warning: unused variable ‘o2’ [-Wunused-variable]
2024-10-11T23:23:40,165   95827 |     PyObject *o, *o2, *o3;
2024-10-11T23:23:40,166         |                   ^~
2024-10-11T23:23:40,169   interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’:
2024-10-11T23:23:40,169   interfaces/Python/RNA_wrap.cpp:95909:19: warning: unused variable ‘o2’ [-Wunused-variable]
2024-10-11T23:23:40,169   95909 |     PyObject *o, *o2, *o3;
2024-10-11T23:23:40,169         |                   ^~
2024-10-11T23:23:40,173   interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’:
2024-10-11T23:23:40,173   interfaces/Python/RNA_wrap.cpp:95999:19: warning: unused variable ‘o2’ [-Wunused-variable]
2024-10-11T23:23:40,174   95999 |     PyObject *o, *o2, *o3;
2024-10-11T23:23:40,174         |                   ^~
2024-10-11T23:23:40,267   interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’:
2024-10-11T23:23:40,267   interfaces/Python/RNA_wrap.cpp:98272:19: warning: unused variable ‘o2’ [-Wunused-variable]
2024-10-11T23:23:40,267   98272 |     PyObject *o, *o2, *o3;
2024-10-11T23:23:40,267         |                   ^~
2024-10-11T23:23:40,275   interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’:
2024-10-11T23:23:40,275   interfaces/Python/RNA_wrap.cpp:98517:19: warning: unused variable ‘o2’ [-Wunused-variable]
2024-10-11T23:23:40,276   98517 |     PyObject *o, *o2, *o3;
2024-10-11T23:23:40,276         |                   ^~
2024-10-11T23:23:40,285   interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’:
2024-10-11T23:23:40,285   interfaces/Python/RNA_wrap.cpp:98800:19: warning: unused variable ‘o2’ [-Wunused-variable]
2024-10-11T23:23:40,285   98800 |     PyObject *o, *o2, *o3;
2024-10-11T23:23:40,286         |                   ^~
2024-10-11T23:24:14,768   In file included from /usr/include/c++/10/vector:72,
2024-10-11T23:24:14,768                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:24:14,769   /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]’:
2024-10-11T23:24:14,769   /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ changed in GCC 7.1
2024-10-11T23:24:14,769     721 |       vector<_Tp, _Alloc>::
2024-10-11T23:24:14,769         |       ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:24:14,769   /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:24:14,770   /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:24:15,032   /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >; _Tp = vrna_path_s; _Alloc = std::allocator<vrna_path_s>]’:
2024-10-11T23:24:15,032   /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector<vrna_path_s, std::allocator<vrna_path_s> >::iterator’ changed in GCC 7.1
2024-10-11T23:24:15,032   /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:24:15,033   /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:24:17,549   /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >; _Tp = duplex_list_t; _Alloc = std::allocator<duplex_list_t>]’:
2024-10-11T23:24:17,549   /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector<duplex_list_t, std::allocator<duplex_list_t> >::iterator’ changed in GCC 7.1
2024-10-11T23:24:17,549   /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:24:17,549   /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:24:43,332   interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’:
2024-10-11T23:24:43,332   interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval5’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:24:43,332    1092 | #define SWIG_NewPointerObj(ptr, type, flags)            SWIG_Python_NewPointerObj(NULL, ptr, type, flags)
2024-10-11T23:24:43,332         |                                                                                  ^
2024-10-11T23:24:43,341   interfaces/Python/RNA_wrap.cpp:98220:26: note: ‘retval5’ was declared here
2024-10-11T23:24:43,341   98220 |   vrna_pbacktrack_mem_t *retval5 ;
2024-10-11T23:24:43,342         |                          ^~~~~~~
2024-10-11T23:24:43,431   interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’:
2024-10-11T23:24:43,431   interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval6’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:24:43,431    1092 | #define SWIG_NewPointerObj(ptr, type, flags)            SWIG_Python_NewPointerObj(NULL, ptr, type, flags)
2024-10-11T23:24:43,431         |                                                                                  ^
2024-10-11T23:24:43,441   interfaces/Python/RNA_wrap.cpp:98460:26: note: ‘retval6’ was declared here
2024-10-11T23:24:43,441   98460 |   vrna_pbacktrack_mem_t *retval6 ;
2024-10-11T23:24:43,441         |                          ^~~~~~~
2024-10-11T23:24:43,542   interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’:
2024-10-11T23:24:43,543   interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval7’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:24:43,543    1092 | #define SWIG_NewPointerObj(ptr, type, flags)            SWIG_Python_NewPointerObj(NULL, ptr, type, flags)
2024-10-11T23:24:43,543         |                                                                                  ^
2024-10-11T23:24:43,552   interfaces/Python/RNA_wrap.cpp:98738:26: note: ‘retval7’ was declared here
2024-10-11T23:24:43,552   98738 |   vrna_pbacktrack_mem_t *retval7 ;
2024-10-11T23:24:43,553         |                          ^~~~~~~
2024-10-11T23:25:22,310   interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_move_neighbor_diff__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’:
2024-10-11T23:25:22,311   interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘temp4’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:25:22,311    1092 | #define SWIG_NewPointerObj(ptr, type, flags)            SWIG_Python_NewPointerObj(NULL, ptr, type, flags)
2024-10-11T23:25:22,311         |                                                                                  ^
2024-10-11T23:25:22,319   interfaces/Python/RNA_wrap.cpp:96595:29: note: ‘temp4’ was declared here
2024-10-11T23:25:22,319   96595 |   var_array< vrna_move_t > *temp4 ;
2024-10-11T23:25:22,319         |                             ^~~~~
2024-10-11T23:25:26,536   In file included from /usr/include/c++/10/vector:72,
2024-10-11T23:25:26,536                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:26,536   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-10-11T23:25:26,536   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:26,536     426 |       vector<_Tp, _Alloc>::
2024-10-11T23:25:26,537         |       ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:26,571   In file included from /usr/include/c++/10/vector:67,
2024-10-11T23:25:26,572                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:26,572   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_append(PyObject*, PyObject*, PyObject*)’:
2024-10-11T23:25:26,572   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:26,572    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:26,572         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:26,636   /usr/include/c++/10/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector<double, std::allocator<double> >; Difference = int]’:
2024-10-11T23:25:26,636   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:26,636    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:26,637         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:26,637   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:26,637    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:26,637         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:26,706   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_push_back(PyObject*, PyObject*, PyObject*)’:
2024-10-11T23:25:26,707   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:26,707    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:26,707         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:26,742   In file included from /usr/include/c++/10/vector:72,
2024-10-11T23:25:26,742                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:26,743   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]’:
2024-10-11T23:25:26,743   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:26,743     171 |     vector<_Tp, _Alloc>::
2024-10-11T23:25:26,743         |     ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:26,755   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]’:
2024-10-11T23:25:26,755   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:26,755     184 |     vector<_Tp, _Alloc>::
2024-10-11T23:25:26,755         |     ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:26,756   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:26,788   In file included from /usr/include/c++/10/vector:67,
2024-10-11T23:25:26,788                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:26,789   /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector<double, std::allocator<double> >; Difference = int]’:
2024-10-11T23:25:26,789   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:26,789    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2024-10-11T23:25:26,789         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:26,789   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:26,789    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2024-10-11T23:25:26,789         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:26,790   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:26,790    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2024-10-11T23:25:26,790         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:26,879   /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<double, std::allocator<double> >; Difference = int; InputSeq = std::vector<double, std::allocator<double> >]’:
2024-10-11T23:25:26,879   /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:26,879    1665 |    _M_range_insert(__pos, __first, __last,
2024-10-11T23:25:26,879         |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:26,879    1666 |      std::__iterator_category(__first));
2024-10-11T23:25:26,880         |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:26,880   /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:26,880   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:26,880    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2024-10-11T23:25:26,880         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:26,880   /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:26,881    1665 |    _M_range_insert(__pos, __first, __last,
2024-10-11T23:25:26,881         |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:26,881    1666 |      std::__iterator_category(__first));
2024-10-11T23:25:26,881         |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:26,881   /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:26,975   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector___delslice__(PyObject*, PyObject*, PyObject*)’:
2024-10-11T23:25:26,976   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:26,976    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2024-10-11T23:25:26,976         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:27,025   In file included from /usr/include/c++/10/vector:72,
2024-10-11T23:25:27,025                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:27,025   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Arg&&) [with _Arg = double; _Tp = double; _Alloc = std::allocator<double>]’:
2024-10-11T23:25:27,025   /usr/include/c++/10/bits/vector.tcc:395:7: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:27,026     395 |       vector<_Tp, _Alloc>::
2024-10-11T23:25:27,026         |       ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:27,066   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
2024-10-11T23:25:27,066   /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:27,066     509 |     vector<_Tp, _Alloc>::
2024-10-11T23:25:27,066         |     ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:36,708   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vrna_path_s&}; _Tp = vrna_path_s; _Alloc = std::allocator<vrna_path_s>]’:
2024-10-11T23:25:36,709   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<vrna_path_s, std::allocator<vrna_path_s> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:36,709     426 |       vector<_Tp, _Alloc>::
2024-10-11T23:25:36,709         |       ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:36,748   In file included from /usr/include/c++/10/vector:67,
2024-10-11T23:25:36,748                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:36,748   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_push_back(PyObject*, PyObject*, PyObject*)’:
2024-10-11T23:25:36,748   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:25:36,748    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:36,749         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:36,792   /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector<vrna_path_s, std::allocator<vrna_path_s> > my_get_path(std::string, std::string, std::string, int)’:
2024-10-11T23:25:36,792   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:25:36,793    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:36,793         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:36,846   /usr/include/c++/10/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector<vrna_path_s, std::allocator<vrna_path_s> >; Difference = int]’:
2024-10-11T23:25:36,846   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:25:36,846    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:36,846         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:36,846   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:25:36,847    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:36,847         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:36,922   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_append(PyObject*, PyObject*, PyObject*)’:
2024-10-11T23:25:36,923   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:25:36,923    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:36,923         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:36,964   In file included from /usr/include/c++/10/vector:72,
2024-10-11T23:25:36,965                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:36,965   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator<vrna_path_s>]’:
2024-10-11T23:25:36,965   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<vrna_path_s, std::allocator<vrna_path_s> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:36,965     171 |     vector<_Tp, _Alloc>::
2024-10-11T23:25:36,965         |     ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:36,977   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator<vrna_path_s>]’:
2024-10-11T23:25:36,978   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<vrna_path_s, std::allocator<vrna_path_s> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:36,978     184 |     vector<_Tp, _Alloc>::
2024-10-11T23:25:36,978         |     ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:36,978   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<vrna_path_s, std::allocator<vrna_path_s> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:37,011   In file included from /usr/include/c++/10/vector:67,
2024-10-11T23:25:37,011                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:37,012   /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector<vrna_path_s, std::allocator<vrna_path_s> >; Difference = int]’:
2024-10-11T23:25:37,012   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:25:37,012    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2024-10-11T23:25:37,012         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:37,013   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:25:37,013    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2024-10-11T23:25:37,013         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:37,013   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:25:37,014    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2024-10-11T23:25:37,014         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:37,103   /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<vrna_path_s, std::allocator<vrna_path_s> >; Difference = int; InputSeq = std::vector<vrna_path_s, std::allocator<vrna_path_s> >]’:
2024-10-11T23:25:37,103   /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector<vrna_path_s, std::allocator<vrna_path_s> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:37,103    1665 |    _M_range_insert(__pos, __first, __last,
2024-10-11T23:25:37,104         |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:37,104    1666 |      std::__iterator_category(__first));
2024-10-11T23:25:37,104         |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:37,104   /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:25:37,104   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:25:37,104    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2024-10-11T23:25:37,105         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:37,105   /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector<vrna_path_s, std::allocator<vrna_path_s> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:37,105    1665 |    _M_range_insert(__pos, __first, __last,
2024-10-11T23:25:37,105         |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:37,105    1666 |      std::__iterator_category(__first));
2024-10-11T23:25:37,105         |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:37,106   /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:25:37,205   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector___delslice__(PyObject*, PyObject*, PyObject*)’:
2024-10-11T23:25:37,206   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:25:37,206    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2024-10-11T23:25:37,206         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:37,254   In file included from /usr/include/c++/10/vector:72,
2024-10-11T23:25:37,254                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:37,254   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Arg&&) [with _Arg = vrna_path_s; _Tp = vrna_path_s; _Alloc = std::allocator<vrna_path_s>]’:
2024-10-11T23:25:37,254   /usr/include/c++/10/bits/vector.tcc:395:7: note: parameter passing for argument of type ‘std::vector<vrna_path_s, std::allocator<vrna_path_s> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:37,255     395 |       vector<_Tp, _Alloc>::
2024-10-11T23:25:37,255         |       ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:37,301   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator<vrna_path_s>]’:
2024-10-11T23:25:37,301   /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<vrna_path_s, std::allocator<vrna_path_s> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:37,301     509 |     vector<_Tp, _Alloc>::
2024-10-11T23:25:37,301         |     ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:39,507   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const duplex_list_t&}; _Tp = duplex_list_t; _Alloc = std::allocator<duplex_list_t>]’:
2024-10-11T23:25:39,507   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<duplex_list_t, std::allocator<duplex_list_t> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:39,507     426 |       vector<_Tp, _Alloc>::
2024-10-11T23:25:39,507         |       ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:39,613   In file included from /usr/include/c++/10/vector:67,
2024-10-11T23:25:39,613                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:39,613   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DuplexVector_append(PyObject*, PyObject*, PyObject*)’:
2024-10-11T23:25:39,613   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:25:39,613    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:39,614         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:39,693   /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector<duplex_list_t, std::allocator<duplex_list_t> > my_duplex_subopt(std::string, std::string, int, int)’:
2024-10-11T23:25:39,693   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:25:39,694    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:39,694         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:39,815   /usr/include/c++/10/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector<duplex_list_t, std::allocator<duplex_list_t> >; Difference = int]’:
2024-10-11T23:25:39,815   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:25:39,815    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:39,815         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:39,816   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:25:39,816    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:39,816         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:39,962   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DuplexVector_push_back(PyObject*, PyObject*, PyObject*)’:
2024-10-11T23:25:39,963   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:25:39,963    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:39,963         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:40,039   In file included from /usr/include/c++/10/vector:72,
2024-10-11T23:25:40,040                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:40,040   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator<duplex_list_t>]’:
2024-10-11T23:25:40,040   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<duplex_list_t, std::allocator<duplex_list_t> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:40,040     171 |     vector<_Tp, _Alloc>::
2024-10-11T23:25:40,040         |     ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:40,099   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator<duplex_list_t>]’:
2024-10-11T23:25:40,099   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<duplex_list_t, std::allocator<duplex_list_t> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:40,099     184 |     vector<_Tp, _Alloc>::
2024-10-11T23:25:40,099         |     ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:40,099   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<duplex_list_t, std::allocator<duplex_list_t> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:40,159   In file included from /usr/include/c++/10/vector:67,
2024-10-11T23:25:40,159                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:40,159   /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector<duplex_list_t, std::allocator<duplex_list_t> >; Difference = int]’:
2024-10-11T23:25:40,159   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:25:40,159    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2024-10-11T23:25:40,160         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:40,160   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:25:40,160    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2024-10-11T23:25:40,160         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:40,160   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:25:40,160    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2024-10-11T23:25:40,160         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:40,262   /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<duplex_list_t, std::allocator<duplex_list_t> >; Difference = int; InputSeq = std::vector<duplex_list_t, std::allocator<duplex_list_t> >]’:
2024-10-11T23:25:40,262   /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector<duplex_list_t, std::allocator<duplex_list_t> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:40,263    1665 |    _M_range_insert(__pos, __first, __last,
2024-10-11T23:25:40,263         |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:40,263    1666 |      std::__iterator_category(__first));
2024-10-11T23:25:40,263         |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:40,263   /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:25:40,263   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:25:40,264    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2024-10-11T23:25:40,264         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:40,264   /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector<duplex_list_t, std::allocator<duplex_list_t> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:40,264    1665 |    _M_range_insert(__pos, __first, __last,
2024-10-11T23:25:40,264         |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:40,264    1666 |      std::__iterator_category(__first));
2024-10-11T23:25:40,264         |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:40,265   /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:25:40,380   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DuplexVector___delslice__(PyObject*, PyObject*, PyObject*)’:
2024-10-11T23:25:40,381   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:25:40,381    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2024-10-11T23:25:40,381         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:40,458   In file included from /usr/include/c++/10/vector:72,
2024-10-11T23:25:40,458                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:40,458   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Arg&&) [with _Arg = duplex_list_t; _Tp = duplex_list_t; _Alloc = std::allocator<duplex_list_t>]’:
2024-10-11T23:25:40,458   /usr/include/c++/10/bits/vector.tcc:395:7: note: parameter passing for argument of type ‘std::vector<duplex_list_t, std::allocator<duplex_list_t> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:40,458     395 |       vector<_Tp, _Alloc>::
2024-10-11T23:25:40,458         |       ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:40,657   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator<duplex_list_t>]’:
2024-10-11T23:25:40,657   /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<duplex_list_t, std::allocator<duplex_list_t> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:40,657     509 |     vector<_Tp, _Alloc>::
2024-10-11T23:25:40,657         |     ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:46,654   In file included from /usr/include/c++/10/vector:67,
2024-10-11T23:25:46,654                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:46,654   /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector<duplex_list_t, std::allocator<duplex_list_t> > my_aliduplex_subopt(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, int, int)’:
2024-10-11T23:25:46,654   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:25:46,654    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:46,654         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:46,953   In file included from /usr/include/c++/10/vector:72,
2024-10-11T23:25:46,954                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:46,954   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-10-11T23:25:46,954   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ changed in GCC 7.1
2024-10-11T23:25:46,954     426 |       vector<_Tp, _Alloc>::
2024-10-11T23:25:46,954         |       ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:46,987   In file included from /usr/include/c++/10/algorithm:62,
2024-10-11T23:25:46,988                    from interfaces/Python/RNA_wrap.cpp:4064:
2024-10-11T23:25:46,988   /usr/include/c++/10/bits/stl_algo.h: In function ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _OIter = std::back_insert_iterator<std::vector<double, std::allocator<double> > >; _UnaryOperation = double (*)(const double&)]’:
2024-10-11T23:25:46,988   /usr/include/c++/10/bits/stl_algo.h:4304:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:46,988    4304 |     transform(_InputIterator __first, _InputIterator __last,
2024-10-11T23:25:46,988         |     ^~~~~~~~~
2024-10-11T23:25:46,988   /usr/include/c++/10/bits/stl_algo.h:4304:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:46,989   In file included from /usr/include/c++/10/vector:72,
2024-10-11T23:25:46,989                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:46,989   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:46,989     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2024-10-11T23:25:46,989         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:47,045   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > pfl_fold_up(std::string, int, int, int)’:
2024-10-11T23:25:47,046   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:47,046     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2024-10-11T23:25:47,046         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:47,046   In file included from /usr/include/c++/10/vector:67,
2024-10-11T23:25:47,046                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:47,046   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:47,047    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:47,047         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:47,405   In file included from /usr/include/c++/10/vector:72,
2024-10-11T23:25:47,406                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:47,406   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<double, std::allocator<double> > my_aln_conservation_col(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, vrna_md_t*, unsigned int)’:
2024-10-11T23:25:47,406   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:47,406     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2024-10-11T23:25:47,406         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:47,462   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<double, std::allocator<double> > my_aln_conservation_struct(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::string, vrna_md_t*)’:
2024-10-11T23:25:47,462   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:47,462     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2024-10-11T23:25:47,462         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:48,027   /usr/include/c++/10/bits/vector.tcc: In function ‘vrna_probing_data_s* probing_data_Zarringhalam2012_comparative(std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >, std::vector<double, std::allocator<double> >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<double, std::allocator<double> >, unsigned int)’:
2024-10-11T23:25:48,050   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:48,050     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2024-10-11T23:25:48,050         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:48,446   interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’:
2024-10-11T23:25:48,446   interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval5’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:25:48,446    1092 | #define SWIG_NewPointerObj(ptr, type, flags)            SWIG_Python_NewPointerObj(NULL, ptr, type, flags)
2024-10-11T23:25:48,446         |                                                                                  ^
2024-10-11T23:25:48,456   interfaces/Python/RNA_wrap.cpp:95947:26: note: ‘retval5’ was declared here
2024-10-11T23:25:48,456   95947 |   vrna_pbacktrack_mem_t *retval5 ;
2024-10-11T23:25:48,456         |                          ^~~~~~~
2024-10-11T23:25:49,179   interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’:
2024-10-11T23:25:49,179   interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval4’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:25:49,179    1092 | #define SWIG_NewPointerObj(ptr, type, flags)            SWIG_Python_NewPointerObj(NULL, ptr, type, flags)
2024-10-11T23:25:49,179         |                                                                                  ^
2024-10-11T23:25:49,189   interfaces/Python/RNA_wrap.cpp:95862:26: note: ‘retval4’ was declared here
2024-10-11T23:25:49,189   95862 |   vrna_pbacktrack_mem_t *retval4 ;
2024-10-11T23:25:49,189         |                          ^~~~~~~
2024-10-11T23:25:49,847   interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’:
2024-10-11T23:25:49,847   interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval3’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:25:49,847    1092 | #define SWIG_NewPointerObj(ptr, type, flags)            SWIG_Python_NewPointerObj(NULL, ptr, type, flags)
2024-10-11T23:25:49,848         |                                                                                  ^
2024-10-11T23:25:49,857   interfaces/Python/RNA_wrap.cpp:95785:26: note: ‘retval3’ was declared here
2024-10-11T23:25:49,857   95785 |   vrna_pbacktrack_mem_t *retval3 ;
2024-10-11T23:25:49,857         |                          ^~~~~~~
2024-10-11T23:25:50,340   In file included from /usr/include/c++/10/vector:72,
2024-10-11T23:25:50,340                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:50,340   /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_fold_compound_bpp(PyObject*, PyObject*)’:
2024-10-11T23:25:50,341   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:25:50,341     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2024-10-11T23:25:50,341         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:25:52,410   In file included from /usr/include/c++/10/vector:67,
2024-10-11T23:25:52,411                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:25:52,411   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_fold_compound_path_direct(PyObject*, PyObject*, PyObject*)’:
2024-10-11T23:25:52,411   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:25:52,411    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:52,411         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:52,412   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:25:52,412    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:52,412         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:25:52,699   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_fold_compound_path_findpath(PyObject*, PyObject*, PyObject*)’:
2024-10-11T23:25:52,700   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:25:52,700    1198 |    _M_realloc_insert(end(), __x);
2024-10-11T23:25:52,700         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-10-11T23:26:03,233   In file included from /usr/include/c++/10/vector:72,
2024-10-11T23:26:03,234                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:26:03,234   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static int swig::traits_asptr_stdseq<Seq, T>::asptr(PyObject*, swig::traits_asptr_stdseq<Seq, T>::sequence**) [with Seq = std::vector<double, std::allocator<double> >; T = double]’:
2024-10-11T23:26:03,234   /usr/include/c++/10/bits/vector.tcc:354:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:26:03,234     354 |    _M_insert_aux(begin() + __n, std::move(__v));
2024-10-11T23:26:03,234         |    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:03,235   /usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:26:03,235     356 |  _M_realloc_insert(begin() + __n, std::move(__v));
2024-10-11T23:26:03,235         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:03,790   interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_sc_set_up(PyObject*, PyObject*, PyObject*)’:
2024-10-11T23:26:03,790   interfaces/Python/RNA_wrap.cpp:15672:106: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:26:03,791   15672 |     transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL);
2024-10-11T23:26:03,791         |                                                                                                          ^
2024-10-11T23:26:04,670   In file included from /usr/include/c++/10/vector:67,
2024-10-11T23:26:04,670                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:26:04,670   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_erase(PyObject*, PyObject*)’:
2024-10-11T23:26:04,670   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:26:04,670    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2024-10-11T23:26:04,670         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:04,672   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:26:04,672    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2024-10-11T23:26:04,672         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:04,921   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector___delitem__(PyObject*, PyObject*)’:
2024-10-11T23:26:04,921   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:26:04,921    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2024-10-11T23:26:04,921         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:05,046   In file included from /usr/include/c++/10/vector:72,
2024-10-11T23:26:05,047                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:26:05,047   /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_DoubleVector_insert(PyObject*, PyObject*)’:
2024-10-11T23:26:05,047   /usr/include/c++/10/bits/vector.tcc:154:19: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:26:05,047     154 |      _M_insert_aux(__pos, std::move(__x_copy._M_val()));
2024-10-11T23:26:05,047         |      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:05,048   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:26:05,048     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2024-10-11T23:26:05,048         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:05,050   In file included from /usr/include/c++/10/vector:67,
2024-10-11T23:26:05,050                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:26:05,050   /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:26:05,050    1338 |  _M_fill_insert(begin() + __offset, __n, __x);
2024-10-11T23:26:05,050         |  ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:05,208   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_resize(PyObject*, PyObject*)’:
2024-10-11T23:26:05,208   /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:26:05,209     960 |    _M_fill_insert(end(), __new_size - size(), __x);
2024-10-11T23:26:05,209         |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:05,333   interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_sc_add_stack__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’:
2024-10-11T23:26:05,334   interfaces/Python/RNA_wrap.cpp:15709:100: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:26:05,334   15709 |     transform(energies.begin(), energies.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL);
2024-10-11T23:26:05,334         |                                                                                                    ^
2024-10-11T23:26:05,528   interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_sc_set_stack__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’:
2024-10-11T23:26:05,528   interfaces/Python/RNA_wrap.cpp:15677:106: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:26:05,528   15677 |     transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL);
2024-10-11T23:26:05,528         |                                                                                                          ^
2024-10-11T23:26:16,687   In file included from /usr/include/c++/10/vector:72,
2024-10-11T23:26:16,688                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:26:16,688   /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_new_probing_data__SWIG_3(PyObject*, Py_ssize_t, PyObject**)’:
2024-10-11T23:26:16,688   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2024-10-11T23:26:16,688     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2024-10-11T23:26:16,688         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:31,966   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {vrna_path_s}; _Tp = vrna_path_s; _Alloc = std::allocator<vrna_path_s>]’:
2024-10-11T23:26:31,966   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<vrna_path_s, std::allocator<vrna_path_s> >::iterator’ changed in GCC 7.1
2024-10-11T23:26:31,966     426 |       vector<_Tp, _Alloc>::
2024-10-11T23:26:31,967         |       ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:32,042   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static int swig::traits_asptr_stdseq<Seq, T>::asptr(PyObject*, swig::traits_asptr_stdseq<Seq, T>::sequence**) [with Seq = std::vector<vrna_path_s, std::allocator<vrna_path_s> >; T = vrna_path_s]’:
2024-10-11T23:26:32,042   /usr/include/c++/10/bits/vector.tcc:354:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:26:32,042     354 |    _M_insert_aux(begin() + __n, std::move(__v));
2024-10-11T23:26:32,042         |    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:32,043   /usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:26:32,043     356 |  _M_realloc_insert(begin() + __n, std::move(__v));
2024-10-11T23:26:32,043         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:32,209   /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_PathVector_insert(PyObject*, PyObject*)’:
2024-10-11T23:26:32,209   /usr/include/c++/10/bits/vector.tcc:154:19: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:26:32,210     154 |      _M_insert_aux(__pos, std::move(__x_copy._M_val()));
2024-10-11T23:26:32,210         |      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:32,210   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:26:32,210     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2024-10-11T23:26:32,210         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:32,212   In file included from /usr/include/c++/10/vector:67,
2024-10-11T23:26:32,212                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:26:32,213   /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:26:32,213    1338 |  _M_fill_insert(begin() + __offset, __n, __x);
2024-10-11T23:26:32,213         |  ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:32,628   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_resize(PyObject*, PyObject*)’:
2024-10-11T23:26:32,628   /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:26:32,628     960 |    _M_fill_insert(end(), __new_size - size(), __x);
2024-10-11T23:26:32,628         |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:32,738   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_erase(PyObject*, PyObject*)’:
2024-10-11T23:26:32,738   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:26:32,738    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2024-10-11T23:26:32,738         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:32,740   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:26:32,740    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2024-10-11T23:26:32,740         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:32,991   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector___delitem__(PyObject*, PyObject*)’:
2024-10-11T23:26:32,992   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<vrna_path_s*, std::vector<vrna_path_s, std::allocator<vrna_path_s> > >’ changed in GCC 7.1
2024-10-11T23:26:32,992    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2024-10-11T23:26:32,992         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:37,407   In file included from /usr/include/c++/10/vector:72,
2024-10-11T23:26:37,408                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:26:37,408   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {duplex_list_t}; _Tp = duplex_list_t; _Alloc = std::allocator<duplex_list_t>]’:
2024-10-11T23:26:37,408   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<duplex_list_t, std::allocator<duplex_list_t> >::iterator’ changed in GCC 7.1
2024-10-11T23:26:37,408     426 |       vector<_Tp, _Alloc>::
2024-10-11T23:26:37,408         |       ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:37,528   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static int swig::traits_asptr_stdseq<Seq, T>::asptr(PyObject*, swig::traits_asptr_stdseq<Seq, T>::sequence**) [with Seq = std::vector<duplex_list_t, std::allocator<duplex_list_t> >; T = duplex_list_t]’:
2024-10-11T23:26:37,528   /usr/include/c++/10/bits/vector.tcc:354:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:26:37,529     354 |    _M_insert_aux(begin() + __n, std::move(__v));
2024-10-11T23:26:37,529         |    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:37,529   /usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:26:37,529     356 |  _M_realloc_insert(begin() + __n, std::move(__v));
2024-10-11T23:26:37,529         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:37,728   /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_DuplexVector_insert(PyObject*, PyObject*)’:
2024-10-11T23:26:37,728   /usr/include/c++/10/bits/vector.tcc:154:19: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:26:37,728     154 |      _M_insert_aux(__pos, std::move(__x_copy._M_val()));
2024-10-11T23:26:37,728         |      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:37,729   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:26:37,729     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2024-10-11T23:26:37,729         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:37,731   In file included from /usr/include/c++/10/vector:67,
2024-10-11T23:26:37,731                    from interfaces/Python/RNA_wrap.cpp:4067:
2024-10-11T23:26:37,731   /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:26:37,731    1338 |  _M_fill_insert(begin() + __offset, __n, __x);
2024-10-11T23:26:37,731         |  ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:37,957   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DuplexVector_resize(PyObject*, PyObject*)’:
2024-10-11T23:26:37,957   /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:26:37,957     960 |    _M_fill_insert(end(), __new_size - size(), __x);
2024-10-11T23:26:37,957         |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:38,082   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DuplexVector_erase(PyObject*, PyObject*)’:
2024-10-11T23:26:38,083   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:26:38,083    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2024-10-11T23:26:38,083         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:38,084   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:26:38,085    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2024-10-11T23:26:38,085         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:26:38,341   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DuplexVector___delitem__(PyObject*, PyObject*)’:
2024-10-11T23:26:38,342   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<duplex_list_t*, std::vector<duplex_list_t, std::allocator<duplex_list_t> > >’ changed in GCC 7.1
2024-10-11T23:26:38,342    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2024-10-11T23:26:38,342         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:27:33,205   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/2Dfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/2Dfold.o -fopenmp
2024-10-11T23:27:33,427   src/ViennaRNA/2Dfold.c: In function ‘vrna_mfe_TwoD’:
2024-10-11T23:27:33,427   src/ViennaRNA/2Dfold.c:329:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,427     329 |     if ((d1 >= ((md->circ) ? matrices->k_min_Fc : matrices->k_min_F5[length]))
2024-10-11T23:27:33,427         |             ^~
2024-10-11T23:27:33,428   src/ViennaRNA/2Dfold.c:330:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,428     330 |         && (d1 <= ((md->circ) ? matrices->k_max_Fc : matrices->k_max_F5[length]))) {
2024-10-11T23:27:33,428         |                ^~
2024-10-11T23:27:33,428   src/ViennaRNA/2Dfold.c:332:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,429     332 |            d2 <= ((md->circ) ? matrices->l_max_Fc[d1] : matrices->l_max_F5[length][d1]);
2024-10-11T23:27:33,429         |               ^~
2024-10-11T23:27:33,430   src/ViennaRNA/2Dfold.c: In function ‘vrna_backtrack5_TwoD’:
2024-10-11T23:27:33,431   src/ViennaRNA/2Dfold.c:404:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,431     404 |   if (j < vc->params->model_details.min_loop_size + 2)
2024-10-11T23:27:33,431         |         ^
2024-10-11T23:27:33,434   src/ViennaRNA/2Dfold.c: In function ‘mfe_linear’:
2024-10-11T23:27:33,435   src/ViennaRNA/2Dfold.c:600:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,435     600 |                     if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) {
2024-10-11T23:27:33,435         |                                      ^~
2024-10-11T23:27:33,435   src/ViennaRNA/2Dfold.c:600:64: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,436     600 |                     if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) {
2024-10-11T23:27:33,436         |                                                                ^~
2024-10-11T23:27:33,439   src/ViennaRNA/2Dfold.c:716:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,440     716 |                       if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) {
2024-10-11T23:27:33,440         |                                               ^~
2024-10-11T23:27:33,440   src/ViennaRNA/2Dfold.c:716:80: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,441     716 |                       if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) {
2024-10-11T23:27:33,441         |                                                                                ^~
2024-10-11T23:27:33,447   src/ViennaRNA/2Dfold.c:1036:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,448    1036 |       if (j > turn + 2) {
2024-10-11T23:27:33,448         |             ^
2024-10-11T23:27:33,460   src/ViennaRNA/2Dfold.c:1406:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,460    1406 |     for (cnt1 = seq_length; cnt1 >= seq_length - turn - 1; cnt1--) {
2024-10-11T23:27:33,460         |                                  ^~
2024-10-11T23:27:33,465   src/ViennaRNA/2Dfold.c: In function ‘backtrack_f5’:
2024-10-11T23:27:33,466   src/ViennaRNA/2Dfold.c:1626:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,466    1626 |   if (j < turn + 2)
2024-10-11T23:27:33,467         |         ^
2024-10-11T23:27:33,468   src/ViennaRNA/2Dfold.c:1652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,469    1652 |   } else if ((k >= da) && (l >= db)) {
2024-10-11T23:27:33,469         |                 ^~
2024-10-11T23:27:33,470   src/ViennaRNA/2Dfold.c:1652:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,470    1652 |   } else if ((k >= da) && (l >= db)) {
2024-10-11T23:27:33,470         |                              ^~
2024-10-11T23:27:33,471   src/ViennaRNA/2Dfold.c:1654:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,471    1654 |       if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) {
2024-10-11T23:27:33,472         |                   ^~
2024-10-11T23:27:33,473   src/ViennaRNA/2Dfold.c:1654:50: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,473    1654 |       if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) {
2024-10-11T23:27:33,473         |                                                  ^~
2024-10-11T23:27:33,474   src/ViennaRNA/2Dfold.c:1655:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,474    1655 |         if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) {
2024-10-11T23:27:33,474         |                     ^~
2024-10-11T23:27:33,476   src/ViennaRNA/2Dfold.c:1655:60: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,476    1655 |         if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) {
2024-10-11T23:27:33,476         |                                                            ^~
2024-10-11T23:27:33,480   src/ViennaRNA/2Dfold.c:1760:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,481    1760 |       } else if ((k >= d1a) && (l >= d1b)) {
2024-10-11T23:27:33,481         |                     ^~
2024-10-11T23:27:33,482   src/ViennaRNA/2Dfold.c:1760:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,482    1760 |       } else if ((k >= d1a) && (l >= d1b)) {
2024-10-11T23:27:33,482         |                                   ^~
2024-10-11T23:27:33,484   In file included from src/ViennaRNA/2Dfold.c:17:
2024-10-11T23:27:33,484   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,484     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,484         |                              ^
2024-10-11T23:27:33,484   src/ViennaRNA/2Dfold.c:1761:23: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,484    1761 |         int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]);
2024-10-11T23:27:33,485         |                       ^~~~
2024-10-11T23:27:33,486   src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:33,486     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,486         |                                            ^~~
2024-10-11T23:27:33,486   src/ViennaRNA/2Dfold.c:1761:23: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,486    1761 |         int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]);
2024-10-11T23:27:33,486         |                       ^~~~
2024-10-11T23:27:33,488   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,488     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,488         |                              ^
2024-10-11T23:27:33,488   src/ViennaRNA/2Dfold.c:1764:25: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,488    1764 |           int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]);
2024-10-11T23:27:33,488         |                         ^~~~
2024-10-11T23:27:33,490   src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:33,490     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,490         |                                            ^~~
2024-10-11T23:27:33,490   src/ViennaRNA/2Dfold.c:1764:25: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,490    1764 |           int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]);
2024-10-11T23:27:33,490         |                         ^~~~
2024-10-11T23:27:33,492   src/ViennaRNA/2Dfold.c: In function ‘backtrack_c’:
2024-10-11T23:27:33,494   src/ViennaRNA/2Dfold.c:1868:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,494    1868 |     if ((unsigned int)base_d1 == k)
2024-10-11T23:27:33,494         |                               ^~
2024-10-11T23:27:33,495   src/ViennaRNA/2Dfold.c:1869:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,495    1869 |       if ((unsigned int)base_d2 == l)
2024-10-11T23:27:33,495         |                                 ^~
2024-10-11T23:27:33,497   src/ViennaRNA/2Dfold.c:1914:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,497    1914 |               if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) {
2024-10-11T23:27:33,498         |                                ^
2024-10-11T23:27:33,498   src/ViennaRNA/2Dfold.c:1914:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,498    1914 |               if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) {
2024-10-11T23:27:33,499         |                                                         ^
2024-10-11T23:27:33,503   src/ViennaRNA/2Dfold.c:2022:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,503    2022 |                 if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) {
2024-10-11T23:27:33,503         |                                         ^
2024-10-11T23:27:33,504   src/ViennaRNA/2Dfold.c:2022:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,504    2022 |                 if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) {
2024-10-11T23:27:33,504         |                                                                         ^
2024-10-11T23:27:33,512   src/ViennaRNA/2Dfold.c: In function ‘backtrack_m’:
2024-10-11T23:27:33,513   src/ViennaRNA/2Dfold.c:2297:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,513    2297 |     if (d1 <= k && d2 <= l) {
2024-10-11T23:27:33,513         |            ^~
2024-10-11T23:27:33,514   src/ViennaRNA/2Dfold.c:2297:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,514    2297 |     if (d1 <= k && d2 <= l) {
2024-10-11T23:27:33,514         |                       ^~
2024-10-11T23:27:33,515   src/ViennaRNA/2Dfold.c:2298:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,516    2298 |       if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) {
2024-10-11T23:27:33,516         |                   ^~
2024-10-11T23:27:33,517   src/ViennaRNA/2Dfold.c:2298:63: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,517    2298 |       if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) {
2024-10-11T23:27:33,517         |                                                               ^~
2024-10-11T23:27:33,518   src/ViennaRNA/2Dfold.c:2299:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,518    2299 |         if ((l - d2 >= l_min_M[my_iindx[i + 1] - j][k - d1]) &&
2024-10-11T23:27:33,518         |                     ^~
2024-10-11T23:27:33,519   src/ViennaRNA/2Dfold.c:2300:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,519    2300 |             (l - d2 <= l_max_M[my_iindx[i + 1] - j][k - d1])) {
2024-10-11T23:27:33,519         |                     ^~
2024-10-11T23:27:33,520   src/ViennaRNA/2Dfold.c:2314:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,521    2314 |       if (d1 <= k && d2 <= l) {
2024-10-11T23:27:33,521         |              ^~
2024-10-11T23:27:33,522   src/ViennaRNA/2Dfold.c:2314:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,522    2314 |       if (d1 <= k && d2 <= l) {
2024-10-11T23:27:33,522         |                         ^~
2024-10-11T23:27:33,523   src/ViennaRNA/2Dfold.c:2315:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,523    2315 |         if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) {
2024-10-11T23:27:33,523         |                     ^~
2024-10-11T23:27:33,524   src/ViennaRNA/2Dfold.c:2315:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,524    2315 |         if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) {
2024-10-11T23:27:33,525         |                                                    ^~
2024-10-11T23:27:33,525   src/ViennaRNA/2Dfold.c:2316:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,526    2316 |           if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) {
2024-10-11T23:27:33,526         |                       ^~
2024-10-11T23:27:33,527   src/ViennaRNA/2Dfold.c:2316:62: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,527    2316 |           if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) {
2024-10-11T23:27:33,527         |                                                              ^~
2024-10-11T23:27:33,531   src/ViennaRNA/2Dfold.c:2368:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,531    2368 |       if (d1 <= k && d2 <= l) {
2024-10-11T23:27:33,531         |              ^~
2024-10-11T23:27:33,532   src/ViennaRNA/2Dfold.c:2368:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,532    2368 |       if (d1 <= k && d2 <= l) {
2024-10-11T23:27:33,532         |                         ^~
2024-10-11T23:27:33,534   In file included from src/ViennaRNA/2Dfold.c:17:
2024-10-11T23:27:33,534   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,534     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,534         |                              ^
2024-10-11T23:27:33,534   src/ViennaRNA/2Dfold.c:2369:55: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,534    2369 |         for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]);
2024-10-11T23:27:33,534         |                                                       ^~~~
2024-10-11T23:27:33,535   src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:33,535     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,535         |                                            ^~~
2024-10-11T23:27:33,535   src/ViennaRNA/2Dfold.c:2369:55: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,536    2369 |         for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]);
2024-10-11T23:27:33,536         |                                                       ^~~~
2024-10-11T23:27:33,536   src/ViennaRNA/2Dfold.c:2369:52: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,537    2369 |         for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]);
2024-10-11T23:27:33,537         |                                                    ^~
2024-10-11T23:27:33,538   In file included from src/ViennaRNA/2Dfold.c:17:
2024-10-11T23:27:33,538   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,538     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,538         |                              ^
2024-10-11T23:27:33,538   src/ViennaRNA/2Dfold.c:2372:24: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,538    2372 |                cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2)
2024-10-11T23:27:33,538         |                        ^~~~
2024-10-11T23:27:33,539   src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:33,539     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,539         |                                            ^~~
2024-10-11T23:27:33,539   src/ViennaRNA/2Dfold.c:2372:24: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,540    2372 |                cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2)
2024-10-11T23:27:33,540         |                        ^~~~
2024-10-11T23:27:33,540   src/ViennaRNA/2Dfold.c:2372:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,541    2372 |                cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2)
2024-10-11T23:27:33,541         |                     ^~
2024-10-11T23:27:33,542   src/ViennaRNA/2Dfold.c:2373:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,542    2373 |             if ((k - d1 - cnt1 >= k_min_C[my_iindx[u + 1] - j]) &&
2024-10-11T23:27:33,542         |                                ^~
2024-10-11T23:27:33,543   src/ViennaRNA/2Dfold.c:2374:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,543    2374 |                 (k - d1 - cnt1 <= k_max_C[my_iindx[u + 1] - j])) {
2024-10-11T23:27:33,543         |                                ^~
2024-10-11T23:27:33,544   src/ViennaRNA/2Dfold.c:2375:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,544    2375 |               if ((l - d2 - cnt2 >= l_min_C[my_iindx[u + 1] - j][k - d1 - cnt1]) &&
2024-10-11T23:27:33,544         |                                  ^~
2024-10-11T23:27:33,545   src/ViennaRNA/2Dfold.c:2376:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,546    2376 |                   (l - d2 - cnt2 <= l_max_C[my_iindx[u + 1] - j][k - d1 - cnt1])) {
2024-10-11T23:27:33,546         |                                  ^~
2024-10-11T23:27:33,548   src/ViennaRNA/2Dfold.c: In function ‘backtrack_m1’:
2024-10-11T23:27:33,549   src/ViennaRNA/2Dfold.c:2496:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,549    2496 |     if (d1 <= k && d2 <= l) {
2024-10-11T23:27:33,550         |            ^~
2024-10-11T23:27:33,551   src/ViennaRNA/2Dfold.c:2496:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,551    2496 |     if (d1 <= k && d2 <= l) {
2024-10-11T23:27:33,551         |                       ^~
2024-10-11T23:27:33,552   src/ViennaRNA/2Dfold.c:2497:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,552    2497 |       if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) {
2024-10-11T23:27:33,552         |                   ^~
2024-10-11T23:27:33,553   src/ViennaRNA/2Dfold.c:2497:51: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,553    2497 |       if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) {
2024-10-11T23:27:33,554         |                                                   ^~
2024-10-11T23:27:33,555   src/ViennaRNA/2Dfold.c:2498:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,555    2498 |         if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) {
2024-10-11T23:27:33,555         |                     ^~
2024-10-11T23:27:33,556   src/ViennaRNA/2Dfold.c:2498:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,556    2498 |         if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) {
2024-10-11T23:27:33,556         |                                                             ^~
2024-10-11T23:27:33,559   src/ViennaRNA/2Dfold.c: In function ‘backtrack_fc’:
2024-10-11T23:27:33,560   src/ViennaRNA/2Dfold.c:2618:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,560    2618 |           if (u < turn)
2024-10-11T23:27:33,560         |                 ^
2024-10-11T23:27:33,564   src/ViennaRNA/2Dfold.c:2672:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,564    2672 |           if (u < turn)
2024-10-11T23:27:33,564         |                 ^
2024-10-11T23:27:33,571   src/ViennaRNA/2Dfold.c:2782:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,571    2782 |       if (seq_length > 2 * turn) {
2024-10-11T23:27:33,571         |                      ^
2024-10-11T23:27:33,575   src/ViennaRNA/2Dfold.c:2867:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,575    2867 |       if ((k == referenceBPs1[my_iindx[1] - seq_length]) &&
2024-10-11T23:27:33,575         |              ^~
2024-10-11T23:27:33,576   src/ViennaRNA/2Dfold.c:2868:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,577    2868 |           (l == referenceBPs2[my_iindx[1] - seq_length]))
2024-10-11T23:27:33,577         |              ^~
2024-10-11T23:27:33,580   src/ViennaRNA/2Dfold.c:2885:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,580    2885 |               if (u < turn)
2024-10-11T23:27:33,580         |                     ^
2024-10-11T23:27:33,583   src/ViennaRNA/2Dfold.c:2908:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,583    2908 |               if ((k >= d1) && (l >= d2)) {
2024-10-11T23:27:33,583         |                      ^~
2024-10-11T23:27:33,585   src/ViennaRNA/2Dfold.c:2908:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,585    2908 |               if ((k >= d1) && (l >= d2)) {
2024-10-11T23:27:33,585         |                                   ^~
2024-10-11T23:27:33,586   src/ViennaRNA/2Dfold.c:2909:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,586    2909 |                 if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) {
2024-10-11T23:27:33,587         |                             ^~
2024-10-11T23:27:33,588   src/ViennaRNA/2Dfold.c:2909:56: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,588    2909 |                 if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) {
2024-10-11T23:27:33,588         |                                                        ^~
2024-10-11T23:27:33,589   src/ViennaRNA/2Dfold.c:2910:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,590    2910 |                   if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) {
2024-10-11T23:27:33,590         |                               ^~
2024-10-11T23:27:33,591   src/ViennaRNA/2Dfold.c:2910:66: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,591    2910 |                   if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) {
2024-10-11T23:27:33,591         |                                                                  ^~
2024-10-11T23:27:33,594   src/ViennaRNA/2Dfold.c:2936:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,594    2936 |               if (u < turn)
2024-10-11T23:27:33,594         |                     ^
2024-10-11T23:27:33,600   src/ViennaRNA/2Dfold.c:2979:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,600    2979 |                   if ((k >= d1) && (l >= d2)) {
2024-10-11T23:27:33,600         |                          ^~
2024-10-11T23:27:33,601   src/ViennaRNA/2Dfold.c:2979:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,601    2979 |                   if ((k >= d1) && (l >= d2)) {
2024-10-11T23:27:33,602         |                                       ^~
2024-10-11T23:27:33,603   In file included from src/ViennaRNA/2Dfold.c:17:
2024-10-11T23:27:33,603   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,603     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,603         |                              ^
2024-10-11T23:27:33,603   src/ViennaRNA/2Dfold.c:2980:54: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,604    2980 |                     for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++)
2024-10-11T23:27:33,604         |                                                      ^~~~
2024-10-11T23:27:33,605   src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:33,605     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,605         |                                      ^~~
2024-10-11T23:27:33,605   src/ViennaRNA/2Dfold.c:2980:54: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,605    2980 |                     for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++)
2024-10-11T23:27:33,605         |                                                      ^~~~
2024-10-11T23:27:33,606   src/ViennaRNA/2Dfold.c:2980:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,607    2980 |                     for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++)
2024-10-11T23:27:33,607         |                                                   ^~
2024-10-11T23:27:33,608   In file included from src/ViennaRNA/2Dfold.c:17:
2024-10-11T23:27:33,608   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,608     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,608         |                              ^
2024-10-11T23:27:33,608   src/ViennaRNA/2Dfold.c:2981:62: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,609    2981 |                       for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2);
2024-10-11T23:27:33,609         |                                                              ^~~~
2024-10-11T23:27:33,610   src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:33,610     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,610         |                                      ^~~
2024-10-11T23:27:33,610   src/ViennaRNA/2Dfold.c:2981:62: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,610    2981 |                       for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2);
2024-10-11T23:27:33,610         |                                                              ^~~~
2024-10-11T23:27:33,611   src/ViennaRNA/2Dfold.c:2981:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,612    2981 |                       for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2);
2024-10-11T23:27:33,612         |                                                           ^~
2024-10-11T23:27:33,613   src/ViennaRNA/2Dfold.c:2983:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,613    2983 |                         if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) {
2024-10-11T23:27:33,613         |                                            ^~
2024-10-11T23:27:33,615   src/ViennaRNA/2Dfold.c:2983:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,615    2983 |                         if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) {
2024-10-11T23:27:33,615         |                                                                              ^~
2024-10-11T23:27:33,616   src/ViennaRNA/2Dfold.c:2984:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,617    2984 |                           if ((l - d2 - cnt2 >= l_min_C[pq][k - d1 - cnt1]) &&
2024-10-11T23:27:33,617         |                                              ^~
2024-10-11T23:27:33,618   src/ViennaRNA/2Dfold.c:2985:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,618    2985 |                               (l - d2 - cnt2 <= l_max_C[pq][k - d1 - cnt1])) {
2024-10-11T23:27:33,618         |                                              ^~
2024-10-11T23:27:33,620   src/ViennaRNA/2Dfold.c:3006:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,620    3006 |           if (seq_length > 2 * turn) {
2024-10-11T23:27:33,621         |                          ^
2024-10-11T23:27:33,624   src/ViennaRNA/2Dfold.c:3022:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,624    3022 |               if ((k >= d1) && (l >= d2)) {
2024-10-11T23:27:33,624         |                      ^~
2024-10-11T23:27:33,625   src/ViennaRNA/2Dfold.c:3022:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,626    3022 |               if ((k >= d1) && (l >= d2)) {
2024-10-11T23:27:33,626         |                                   ^~
2024-10-11T23:27:33,627   In file included from src/ViennaRNA/2Dfold.c:17:
2024-10-11T23:27:33,627   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,627     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,627         |                              ^
2024-10-11T23:27:33,628   src/ViennaRNA/2Dfold.c:3024:58: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,628    3024 |                        k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1);
2024-10-11T23:27:33,628         |                                                          ^~~~
2024-10-11T23:27:33,629   src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:33,629     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,629         |                                      ^~~
2024-10-11T23:27:33,629   src/ViennaRNA/2Dfold.c:3024:58: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,629    3024 |                        k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1);
2024-10-11T23:27:33,629         |                                                          ^~~~
2024-10-11T23:27:33,631   src/ViennaRNA/2Dfold.c:3024:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,631    3024 |                        k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1);
2024-10-11T23:27:33,631         |                                                       ^~
2024-10-11T23:27:33,632   In file included from src/ViennaRNA/2Dfold.c:17:
2024-10-11T23:27:33,632   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,632     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,633         |                              ^
2024-10-11T23:27:33,633   src/ViennaRNA/2Dfold.c:3027:32: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,633    3027 |                        cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2)
2024-10-11T23:27:33,633         |                                ^~~~
2024-10-11T23:27:33,634   src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:33,634     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,634         |                                      ^~~
2024-10-11T23:27:33,634   src/ViennaRNA/2Dfold.c:3027:32: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,635    3027 |                        cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2)
2024-10-11T23:27:33,635         |                                ^~~~
2024-10-11T23:27:33,636   src/ViennaRNA/2Dfold.c:3027:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,636    3027 |                        cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2)
2024-10-11T23:27:33,636         |                             ^~
2024-10-11T23:27:33,637   src/ViennaRNA/2Dfold.c:3028:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,637    3028 |                     if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) {
2024-10-11T23:27:33,638         |                                        ^~
2024-10-11T23:27:33,639   src/ViennaRNA/2Dfold.c:3028:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,639    3028 |                     if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) {
2024-10-11T23:27:33,639         |                                                                              ^~
2024-10-11T23:27:33,641   src/ViennaRNA/2Dfold.c:3029:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,641    3029 |                       if ((l - d2 - cnt2 >= l_min_M2[i + 1][k - d1 - cnt1]) &&
2024-10-11T23:27:33,641         |                                          ^~
2024-10-11T23:27:33,642   src/ViennaRNA/2Dfold.c:3030:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,642    3030 |                           (l - d2 - cnt2 <= l_max_M2[i + 1][k - d1 - cnt1])) {
2024-10-11T23:27:33,642         |                                          ^~
2024-10-11T23:27:33,649   In file included from src/ViennaRNA/2Dfold.c:17:
2024-10-11T23:27:33,649   src/ViennaRNA/2Dfold.c: In function ‘backtrack_m2’:
2024-10-11T23:27:33,650   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,651     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,651         |                              ^
2024-10-11T23:27:33,651   src/ViennaRNA/2Dfold.c:3177:41: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,651    3177 |       for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++)
2024-10-11T23:27:33,651         |                                         ^~~~
2024-10-11T23:27:33,652   src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:33,652     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,652         |                                      ^~~
2024-10-11T23:27:33,653   src/ViennaRNA/2Dfold.c:3177:41: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,653    3177 |       for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++)
2024-10-11T23:27:33,653         |                                         ^~~~
2024-10-11T23:27:33,654   src/ViennaRNA/2Dfold.c:3177:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,654    3177 |       for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++)
2024-10-11T23:27:33,654         |                                      ^~
2024-10-11T23:27:33,656   In file included from src/ViennaRNA/2Dfold.c:17:
2024-10-11T23:27:33,656   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,656     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,657         |                              ^
2024-10-11T23:27:33,657   src/ViennaRNA/2Dfold.c:3178:49: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,657    3178 |         for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2)
2024-10-11T23:27:33,657         |                                                 ^~~~
2024-10-11T23:27:33,658   src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:33,658     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:33,659         |                                      ^~~
2024-10-11T23:27:33,659   src/ViennaRNA/2Dfold.c:3178:49: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:33,659    3178 |         for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2)
2024-10-11T23:27:33,659         |                                                 ^~~~
2024-10-11T23:27:33,660   src/ViennaRNA/2Dfold.c:3178:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:33,660    3178 |         for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2)
2024-10-11T23:27:33,660         |                                              ^~
2024-10-11T23:27:33,662   src/ViennaRNA/2Dfold.c:3179:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,662    3179 |           if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) {
2024-10-11T23:27:33,662         |                              ^~
2024-10-11T23:27:33,664   src/ViennaRNA/2Dfold.c:3179:65: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,664    3179 |           if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) {
2024-10-11T23:27:33,665         |                                                                 ^~
2024-10-11T23:27:33,666   src/ViennaRNA/2Dfold.c:3180:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,666    3180 |             if ((l - d2 - cnt2 >= l_min_M1[j3][k - d1 - cnt1]) &&
2024-10-11T23:27:33,666         |                                ^~
2024-10-11T23:27:33,668   src/ViennaRNA/2Dfold.c:3181:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,668    3181 |                 (l - d2 - cnt2 <= l_max_M1[j3][k - d1 - cnt1])) {
2024-10-11T23:27:33,668         |                                ^~
2024-10-11T23:27:33,675   src/ViennaRNA/2Dfold.c: In function ‘mfe_circ’:
2024-10-11T23:27:33,676   src/ViennaRNA/2Dfold.c:3561:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,676    3561 |       if (u < turn)
2024-10-11T23:27:33,677         |             ^
2024-10-11T23:27:33,683   src/ViennaRNA/2Dfold.c:3635:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,684    3635 |       if (u < turn)
2024-10-11T23:27:33,684         |             ^
2024-10-11T23:27:33,697   src/ViennaRNA/2Dfold.c:3800:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:33,698    3800 |   if (seq_length > 2 * turn) {
2024-10-11T23:27:33,698         |                  ^
2024-10-11T23:27:41,657   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/2Dpfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/2Dpfold.o -fopenmp
2024-10-11T23:27:41,890   src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear’:
2024-10-11T23:27:41,891   src/ViennaRNA/2Dpfold.c:435:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:41,891     435 |     for (i = (j > turn ? (j - turn) : 1); i <= j; i++) {
2024-10-11T23:27:41,891         |                 ^
2024-10-11T23:27:41,894   src/ViennaRNA/2Dpfold.c:587:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,894     587 |                 if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) {
2024-10-11T23:27:41,894         |                                  ^~
2024-10-11T23:27:41,895   src/ViennaRNA/2Dpfold.c:587:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,895     587 |                 if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) {
2024-10-11T23:27:41,895         |                                                            ^~
2024-10-11T23:27:41,898   src/ViennaRNA/2Dpfold.c:670:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,898     670 |                     if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) {
2024-10-11T23:27:41,898         |                                             ^~
2024-10-11T23:27:41,898   src/ViennaRNA/2Dpfold.c:670:78: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,898     670 |                     if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) {
2024-10-11T23:27:41,898         |                                                                              ^~
2024-10-11T23:27:41,901   src/ViennaRNA/2Dpfold.c:800:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,901     800 |             if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) {
2024-10-11T23:27:41,901         |                              ^~
2024-10-11T23:27:41,901   src/ViennaRNA/2Dpfold.c:800:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,901     800 |             if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) {
2024-10-11T23:27:41,902         |                                                        ^~
2024-10-11T23:27:41,903   src/ViennaRNA/2Dpfold.c:832:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,903     832 |             if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) {
2024-10-11T23:27:41,903         |                              ^~
2024-10-11T23:27:41,903   src/ViennaRNA/2Dpfold.c:832:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,903     832 |             if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) {
2024-10-11T23:27:41,903         |                                                        ^~
2024-10-11T23:27:41,907   src/ViennaRNA/2Dpfold.c:956:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,907     956 |             if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) {
2024-10-11T23:27:41,907         |                              ^~
2024-10-11T23:27:41,907   src/ViennaRNA/2Dpfold.c:956:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,907     956 |             if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) {
2024-10-11T23:27:41,907         |                                                        ^~
2024-10-11T23:27:41,909   src/ViennaRNA/2Dpfold.c:995:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,909     995 |                 if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) {
2024-10-11T23:27:41,909         |                                         ^~
2024-10-11T23:27:41,909   src/ViennaRNA/2Dpfold.c:995:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,910     995 |                 if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) {
2024-10-11T23:27:41,910         |                                                                          ^~
2024-10-11T23:27:41,913   src/ViennaRNA/2Dpfold.c:1125:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,913    1125 |             if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) {
2024-10-11T23:27:41,913         |                              ^~
2024-10-11T23:27:41,913   src/ViennaRNA/2Dpfold.c:1125:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,913    1125 |             if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) {
2024-10-11T23:27:41,913         |                                                        ^~
2024-10-11T23:27:41,916   src/ViennaRNA/2Dpfold.c:1207:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,917    1207 |                 if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) {
2024-10-11T23:27:41,917         |                                         ^~
2024-10-11T23:27:41,917   src/ViennaRNA/2Dpfold.c:1207:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,917    1207 |                 if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) {
2024-10-11T23:27:41,917         |                                                                          ^~
2024-10-11T23:27:41,923   src/ViennaRNA/2Dpfold.c: In function ‘pf2D_circ’:
2024-10-11T23:27:41,924   src/ViennaRNA/2Dpfold.c:1636:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:41,924    1636 |       if (u < turn)
2024-10-11T23:27:41,924         |             ^
2024-10-11T23:27:41,933   src/ViennaRNA/2Dpfold.c:1854:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:41,933    1854 |   if (seq_length > 2 * turn - 3) {
2024-10-11T23:27:41,934         |                  ^
2024-10-11T23:27:41,945   src/ViennaRNA/2Dpfold.c: In function ‘vrna_pbacktrack5_TwoD’:
2024-10-11T23:27:41,946   src/ViennaRNA/2Dpfold.c:2312:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,946    2312 |       if ((d1 == referenceBPs1[sn])
2024-10-11T23:27:41,947         |               ^~
2024-10-11T23:27:41,947   src/ViennaRNA/2Dpfold.c:2313:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,948    2313 |           && (d2 == referenceBPs2[sn])) {
2024-10-11T23:27:41,948         |                  ^~
2024-10-11T23:27:41,949   src/ViennaRNA/2Dpfold.c:2324:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,949    2324 |         if (d1 >= da && d2 >= db) {
2024-10-11T23:27:41,949         |                ^~
2024-10-11T23:27:41,950   src/ViennaRNA/2Dpfold.c:2324:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,950    2324 |         if (d1 >= da && d2 >= db) {
2024-10-11T23:27:41,951         |                            ^~
2024-10-11T23:27:41,952   src/ViennaRNA/2Dpfold.c:2326:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:41,952    2326 |             (d1 - da >= k_min_Q[my_iindx[i + 1] - length])
2024-10-11T23:27:41,952         |                      ^~
2024-10-11T23:27:41,953   src/ViennaRNA/2Dpfold.c:2327:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:41,953    2327 |             && (d1 - da <= k_max_Q[my_iindx[i + 1] - length])) {
2024-10-11T23:27:41,953         |                         ^~
2024-10-11T23:27:41,954   src/ViennaRNA/2Dpfold.c:2329:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:41,954    2329 |               (d2 - db >= l_min_Q[my_iindx[i + 1] - length][d1 - da])
2024-10-11T23:27:41,954         |                        ^~
2024-10-11T23:27:41,955   src/ViennaRNA/2Dpfold.c:2330:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:41,955    2330 |               && (d2 - db <= l_max_Q[my_iindx[i + 1] - length][d1 - da]))
2024-10-11T23:27:41,955         |                           ^~
2024-10-11T23:27:41,958   src/ViennaRNA/2Dpfold.c:2358:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,958    2358 |           if ((d1 >= da)
2024-10-11T23:27:41,958         |                   ^~
2024-10-11T23:27:41,959   src/ViennaRNA/2Dpfold.c:2359:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,959    2359 |               && (d2 >= db)
2024-10-11T23:27:41,959         |                      ^~
2024-10-11T23:27:41,961   In file included from src/ViennaRNA/2Dpfold.c:18:
2024-10-11T23:27:41,961   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,961     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:41,961         |                              ^
2024-10-11T23:27:41,961   src/ViennaRNA/2Dpfold.c:2363:26: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:41,961    2363 |                  cnt1 <= MIN2(k_max_Q_B[ij], d1 - da);
2024-10-11T23:27:41,962         |                          ^~~~
2024-10-11T23:27:41,962   src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:41,962     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:41,963         |                                      ^~~
2024-10-11T23:27:41,963   src/ViennaRNA/2Dpfold.c:2363:26: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:41,963    2363 |                  cnt1 <= MIN2(k_max_Q_B[ij], d1 - da);
2024-10-11T23:27:41,963         |                          ^~~~
2024-10-11T23:27:41,964   src/ViennaRNA/2Dpfold.c:2363:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,964    2363 |                  cnt1 <= MIN2(k_max_Q_B[ij], d1 - da);
2024-10-11T23:27:41,964         |                       ^~
2024-10-11T23:27:41,965   In file included from src/ViennaRNA/2Dpfold.c:18:
2024-10-11T23:27:41,965   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,965     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:41,965         |                              ^
2024-10-11T23:27:41,965   src/ViennaRNA/2Dpfold.c:2366:28: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:41,966    2366 |                    cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db);
2024-10-11T23:27:41,966         |                            ^~~~
2024-10-11T23:27:41,966   src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:41,967     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:41,967         |                                      ^~~
2024-10-11T23:27:41,967   src/ViennaRNA/2Dpfold.c:2366:28: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:41,967    2366 |                    cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db);
2024-10-11T23:27:41,967         |                            ^~~~
2024-10-11T23:27:41,968   src/ViennaRNA/2Dpfold.c:2366:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,968    2366 |                    cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db);
2024-10-11T23:27:41,968         |                         ^~
2024-10-11T23:27:41,969   src/ViennaRNA/2Dpfold.c:2368:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:41,969    2368 |                 if ((d1 - da - cnt1 >= k_min_Q[my_iindx[j + 1] - length])
2024-10-11T23:27:41,969         |                                     ^~
2024-10-11T23:27:41,970   src/ViennaRNA/2Dpfold.c:2369:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:41,970    2369 |                     && (d1 - da - cnt1 <= k_max_Q[my_iindx[j + 1] - length])) {
2024-10-11T23:27:41,971         |                                        ^~
2024-10-11T23:27:41,971   src/ViennaRNA/2Dpfold.c:2370:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:41,972    2370 |                   if ((d2 - db - cnt2 >= l_min_Q[my_iindx[j + 1] - length][d1 - da - cnt1])
2024-10-11T23:27:41,972         |                                       ^~
2024-10-11T23:27:41,973   src/ViennaRNA/2Dpfold.c:2371:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:41,973    2371 |                       && (d2 - db - cnt2 <= l_max_Q[my_iindx[j + 1] - length][d1 - da - cnt1])) {
2024-10-11T23:27:41,973         |                                          ^~
2024-10-11T23:27:41,975   src/ViennaRNA/2Dpfold.c:2395:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,975    2395 |         if (d1 >= da && d2 >= db) {
2024-10-11T23:27:41,975         |                ^~
2024-10-11T23:27:41,976   src/ViennaRNA/2Dpfold.c:2395:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:41,976    2395 |         if (d1 >= da && d2 >= db) {
2024-10-11T23:27:41,976         |                            ^~
2024-10-11T23:27:41,979   src/ViennaRNA/2Dpfold.c: In function ‘pbacktrack_circ’:
2024-10-11T23:27:41,980   src/ViennaRNA/2Dpfold.c:2559:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:41,980    2559 |     if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) {
2024-10-11T23:27:41,980         |                                         ^~
2024-10-11T23:27:41,982   src/ViennaRNA/2Dpfold.c:2559:83: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:41,982    2559 |     if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) {
2024-10-11T23:27:41,982         |                                                                                   ^~
2024-10-11T23:27:41,988   src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcH’:
2024-10-11T23:27:41,990   src/ViennaRNA/2Dpfold.c:2763:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:41,990    2763 |             if (((cnt1 + da) == d1)
2024-10-11T23:27:41,990         |                              ^~
2024-10-11T23:27:41,991   src/ViennaRNA/2Dpfold.c:2764:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:41,991    2764 |                 && ((cnt2 + db) == d2)) {
2024-10-11T23:27:41,991         |                                 ^~
2024-10-11T23:27:42,004   src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcI’:
2024-10-11T23:27:42,006   src/ViennaRNA/2Dpfold.c:3042:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,006    3042 |                     if (((cnt1 + cnt3 + da) == d1)
2024-10-11T23:27:42,006         |                                             ^~
2024-10-11T23:27:42,007   src/ViennaRNA/2Dpfold.c:3043:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,007    3043 |                         && ((cnt2 + cnt4 + db) == d2)) {
2024-10-11T23:27:42,007         |                                                ^~
2024-10-11T23:27:42,010   src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcM’:
2024-10-11T23:27:42,012   src/ViennaRNA/2Dpfold.c:3228:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,012    3228 |                 if (((cnt1 + cnt3 + da) == d1)
2024-10-11T23:27:42,012         |                                         ^~
2024-10-11T23:27:42,013   src/ViennaRNA/2Dpfold.c:3229:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,014    3229 |                     && ((cnt2 + cnt4 + db) == d2)) {
2024-10-11T23:27:42,014         |                                            ^~
2024-10-11T23:27:42,020   src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm2’:
2024-10-11T23:27:42,021   src/ViennaRNA/2Dpfold.c:3400:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,021    3400 |               if (((cnt1 + cnt3 + da) == d1)
2024-10-11T23:27:42,021         |                                       ^~
2024-10-11T23:27:42,023   src/ViennaRNA/2Dpfold.c:3401:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,023    3401 |                   && ((cnt2 + cnt4 + db) == d2)) {
2024-10-11T23:27:42,023         |                                          ^~
2024-10-11T23:27:42,030   src/ViennaRNA/2Dpfold.c: In function ‘backtrack’:
2024-10-11T23:27:42,032   src/ViennaRNA/2Dpfold.c:3599:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,032    3599 |       if ((da == d1) && (db == d2))
2024-10-11T23:27:42,032         |               ^~
2024-10-11T23:27:42,034   src/ViennaRNA/2Dpfold.c:3599:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,034    3599 |       if ((da == d1) && (db == d2))
2024-10-11T23:27:42,035         |                             ^~
2024-10-11T23:27:42,040   src/ViennaRNA/2Dpfold.c:3634:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,040    3634 |             if (d1 >= da && d2 >= db) {
2024-10-11T23:27:42,040         |                    ^~
2024-10-11T23:27:42,042   src/ViennaRNA/2Dpfold.c:3634:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,042    3634 |             if (d1 >= da && d2 >= db) {
2024-10-11T23:27:42,042         |                                ^~
2024-10-11T23:27:42,044   src/ViennaRNA/2Dpfold.c:3635:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,044    3635 |               if ((d1 - da >= k_min_Q_B[my_iindx[k] - l]) &&
2024-10-11T23:27:42,044         |                            ^~
2024-10-11T23:27:42,046   src/ViennaRNA/2Dpfold.c:3636:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,046    3636 |                   (d1 - da <= k_max_Q_B[my_iindx[k] - l])) {
2024-10-11T23:27:42,046         |                            ^~
2024-10-11T23:27:42,047   src/ViennaRNA/2Dpfold.c:3637:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,048    3637 |                 if ((d2 - db >= l_min_Q_B[my_iindx[k] - l][d1 - da]) &&
2024-10-11T23:27:42,048         |                              ^~
2024-10-11T23:27:42,049   src/ViennaRNA/2Dpfold.c:3638:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,050    3638 |                     (d2 - db <= l_max_Q_B[my_iindx[k] - l][d1 - da])) {
2024-10-11T23:27:42,050         |                              ^~
2024-10-11T23:27:42,058   src/ViennaRNA/2Dpfold.c:3810:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,058    3810 |         if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) {
2024-10-11T23:27:42,058         |                ^~
2024-10-11T23:27:42,060   src/ViennaRNA/2Dpfold.c:3810:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,060    3810 |         if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) {
2024-10-11T23:27:42,060         |                            ^~
2024-10-11T23:27:42,062   In file included from src/ViennaRNA/2Dpfold.c:18:
2024-10-11T23:27:42,062   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,063     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:42,063         |                              ^
2024-10-11T23:27:42,063   src/ViennaRNA/2Dpfold.c:3811:54: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:42,063    3811 |           for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++)
2024-10-11T23:27:42,063         |                                                      ^~~~
2024-10-11T23:27:42,065   src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:42,065     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:42,065         |                                      ^~~
2024-10-11T23:27:42,065   src/ViennaRNA/2Dpfold.c:3811:54: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:42,065    3811 |           for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++)
2024-10-11T23:27:42,065         |                                                      ^~~~
2024-10-11T23:27:42,067   src/ViennaRNA/2Dpfold.c:3811:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,067    3811 |           for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++)
2024-10-11T23:27:42,067         |                                                   ^~
2024-10-11T23:27:42,069   In file included from src/ViennaRNA/2Dpfold.c:18:
2024-10-11T23:27:42,069   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,069     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:42,069         |                              ^
2024-10-11T23:27:42,070   src/ViennaRNA/2Dpfold.c:3813:26: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:42,070    3813 |                  cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2)
2024-10-11T23:27:42,070         |                          ^~~~
2024-10-11T23:27:42,071   src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:42,071     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:42,072         |                                      ^~~
2024-10-11T23:27:42,072   src/ViennaRNA/2Dpfold.c:3813:26: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:42,072    3813 |                  cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2)
2024-10-11T23:27:42,072         |                          ^~~~
2024-10-11T23:27:42,074   src/ViennaRNA/2Dpfold.c:3813:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,074    3813 |                  cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2)
2024-10-11T23:27:42,074         |                       ^~
2024-10-11T23:27:42,076   src/ViennaRNA/2Dpfold.c:3814:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,076    3814 |               if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k]))
2024-10-11T23:27:42,076         |                                   ^~
2024-10-11T23:27:42,078   src/ViennaRNA/2Dpfold.c:3814:77: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,078    3814 |               if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k]))
2024-10-11T23:27:42,078         |                                                                             ^~
2024-10-11T23:27:42,080   src/ViennaRNA/2Dpfold.c:3815:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,080    3815 |                 if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) &&
2024-10-11T23:27:42,080         |                                     ^~
2024-10-11T23:27:42,082   src/ViennaRNA/2Dpfold.c:3816:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,082    3816 |                     (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da]))
2024-10-11T23:27:42,082         |                                     ^~
2024-10-11T23:27:42,084   src/ViennaRNA/2Dpfold.c:3827:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,084    3827 |         if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) {
2024-10-11T23:27:42,084         |                ^~
2024-10-11T23:27:42,086   src/ViennaRNA/2Dpfold.c:3827:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,087    3827 |         if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) {
2024-10-11T23:27:42,087         |                            ^~
2024-10-11T23:27:42,089   In file included from src/ViennaRNA/2Dpfold.c:18:
2024-10-11T23:27:42,089   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,089     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:42,089         |                              ^
2024-10-11T23:27:42,089   src/ViennaRNA/2Dpfold.c:3828:54: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:42,089    3828 |           for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++)
2024-10-11T23:27:42,089         |                                                      ^~~~
2024-10-11T23:27:42,091   src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:42,091     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:42,091         |                                      ^~~
2024-10-11T23:27:42,091   src/ViennaRNA/2Dpfold.c:3828:54: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:42,091    3828 |           for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++)
2024-10-11T23:27:42,091         |                                                      ^~~~
2024-10-11T23:27:42,093   src/ViennaRNA/2Dpfold.c:3828:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,093    3828 |           for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++)
2024-10-11T23:27:42,093         |                                                   ^~
2024-10-11T23:27:42,095   In file included from src/ViennaRNA/2Dpfold.c:18:
2024-10-11T23:27:42,095   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,096     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:42,096         |                              ^
2024-10-11T23:27:42,096   src/ViennaRNA/2Dpfold.c:3830:26: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:42,096    3830 |                  cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2)
2024-10-11T23:27:42,096         |                          ^~~~
2024-10-11T23:27:42,098   src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:42,098     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:42,098         |                                      ^~~
2024-10-11T23:27:42,098   src/ViennaRNA/2Dpfold.c:3830:26: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:42,098    3830 |                  cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2)
2024-10-11T23:27:42,098         |                          ^~~~
2024-10-11T23:27:42,100   src/ViennaRNA/2Dpfold.c:3830:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,100    3830 |                  cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2)
2024-10-11T23:27:42,100         |                       ^~
2024-10-11T23:27:42,102   src/ViennaRNA/2Dpfold.c:3831:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,102    3831 |               if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) &&
2024-10-11T23:27:42,102         |                                   ^~
2024-10-11T23:27:42,104   src/ViennaRNA/2Dpfold.c:3832:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,104    3832 |                   (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) {
2024-10-11T23:27:42,104         |                                   ^~
2024-10-11T23:27:42,106   src/ViennaRNA/2Dpfold.c:3833:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,106    3833 |                 if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) &&
2024-10-11T23:27:42,106         |                                     ^~
2024-10-11T23:27:42,108   src/ViennaRNA/2Dpfold.c:3834:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,108    3834 |                     (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) {
2024-10-11T23:27:42,108         |                                     ^~
2024-10-11T23:27:42,111   src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm1’:
2024-10-11T23:27:42,113   src/ViennaRNA/2Dpfold.c:3965:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,113    3965 |         if (d1 >= da && d2 >= db) {
2024-10-11T23:27:42,113         |                ^~
2024-10-11T23:27:42,115   src/ViennaRNA/2Dpfold.c:3965:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,115    3965 |         if (d1 >= da && d2 >= db) {
2024-10-11T23:27:42,116         |                            ^~
2024-10-11T23:27:42,117   src/ViennaRNA/2Dpfold.c:3966:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,117    3966 |           if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) {
2024-10-11T23:27:42,118         |                        ^~
2024-10-11T23:27:42,120   src/ViennaRNA/2Dpfold.c:3966:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,120    3966 |           if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) {
2024-10-11T23:27:42,120         |                                                          ^~
2024-10-11T23:27:42,122   src/ViennaRNA/2Dpfold.c:3967:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,122    3967 |             if ((d2 - db >= l_min_Q_B[ii - l][d1 - da]) &&
2024-10-11T23:27:42,122         |                          ^~
2024-10-11T23:27:42,124   src/ViennaRNA/2Dpfold.c:3968:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,124    3968 |                 (d2 - db <= l_max_Q_B[ii - l][d1 - da])) {
2024-10-11T23:27:42,124         |                          ^~
2024-10-11T23:27:42,130   src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm’:
2024-10-11T23:27:42,132   src/ViennaRNA/2Dpfold.c:4186:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,132    4186 |           if (d1 >= da2 && d2 >= db2) {
2024-10-11T23:27:42,132         |                  ^~
2024-10-11T23:27:42,134   src/ViennaRNA/2Dpfold.c:4186:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,134    4186 |           if (d1 >= da2 && d2 >= db2) {
2024-10-11T23:27:42,134         |                               ^~
2024-10-11T23:27:42,136   src/ViennaRNA/2Dpfold.c:4187:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,136    4187 |             if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) {
2024-10-11T23:27:42,136         |                           ^~
2024-10-11T23:27:42,139   src/ViennaRNA/2Dpfold.c:4187:69: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,139    4187 |             if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) {
2024-10-11T23:27:42,139         |                                                                     ^~
2024-10-11T23:27:42,141   src/ViennaRNA/2Dpfold.c:4188:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,141    4188 |               if ((d2 - db2 >= l_min_Q_M1[jindx[j] + k][d1 - da2]) &&
2024-10-11T23:27:42,141         |                             ^~
2024-10-11T23:27:42,143   src/ViennaRNA/2Dpfold.c:4189:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,143    4189 |                   (d2 - db2 <= l_max_Q_M1[jindx[j] + k][d1 - da2])) {
2024-10-11T23:27:42,143         |                             ^~
2024-10-11T23:27:42,145   src/ViennaRNA/2Dpfold.c:4202:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,145    4202 |           if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) {
2024-10-11T23:27:42,145         |                  ^~
2024-10-11T23:27:42,148   src/ViennaRNA/2Dpfold.c:4202:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,148    4202 |           if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) {
2024-10-11T23:27:42,148         |                              ^~
2024-10-11T23:27:42,150   In file included from src/ViennaRNA/2Dpfold.c:18:
2024-10-11T23:27:42,150   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,150     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:42,150         |                              ^
2024-10-11T23:27:42,151   src/ViennaRNA/2Dpfold.c:4204:26: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:42,151    4204 |                  cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++)
2024-10-11T23:27:42,151         |                          ^~~~
2024-10-11T23:27:42,153   src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:42,153     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:42,153         |                                      ^~~
2024-10-11T23:27:42,153   src/ViennaRNA/2Dpfold.c:4204:26: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:42,153    4204 |                  cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++)
2024-10-11T23:27:42,153         |                          ^~~~
2024-10-11T23:27:42,155   src/ViennaRNA/2Dpfold.c:4204:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,155    4204 |                  cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++)
2024-10-11T23:27:42,155         |                       ^~
2024-10-11T23:27:42,157   In file included from src/ViennaRNA/2Dpfold.c:18:
2024-10-11T23:27:42,158   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,158     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:42,158         |                              ^
2024-10-11T23:27:42,158   src/ViennaRNA/2Dpfold.c:4206:28: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:42,158    4206 |                    cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2)
2024-10-11T23:27:42,158         |                            ^~~~
2024-10-11T23:27:42,160   src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:27:42,160     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:27:42,160         |                                      ^~~
2024-10-11T23:27:42,160   src/ViennaRNA/2Dpfold.c:4206:28: note: in expansion of macro ‘MIN2’
2024-10-11T23:27:42,160    4206 |                    cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2)
2024-10-11T23:27:42,161         |                            ^~~~
2024-10-11T23:27:42,162   src/ViennaRNA/2Dpfold.c:4206:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,163    4206 |                    cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2)
2024-10-11T23:27:42,163         |                         ^~
2024-10-11T23:27:42,165   src/ViennaRNA/2Dpfold.c:4207:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,165    4207 |                 if ((d1 - da - cnt1 >= k_min_Q_M1[jindx[j] + k]) &&
2024-10-11T23:27:42,165         |                                     ^~
2024-10-11T23:27:42,167   src/ViennaRNA/2Dpfold.c:4208:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,167    4208 |                     (d1 - da - cnt1 <= k_max_Q_M1[jindx[j] + k])) {
2024-10-11T23:27:42,167         |                                     ^~
2024-10-11T23:27:42,169   src/ViennaRNA/2Dpfold.c:4209:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,169    4209 |                   if ((d2 - db - cnt2 >= l_min_Q_M1[jindx[j] + k][d1 - da - cnt1]) &&
2024-10-11T23:27:42,169         |                                       ^~
2024-10-11T23:27:42,171   src/ViennaRNA/2Dpfold.c:4210:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:27:42,171    4210 |                       (d2 - db - cnt2 <= l_max_Q_M1[jindx[j] + k][d1 - da - cnt1])) {
2024-10-11T23:27:42,171         |                                       ^~
2024-10-11T23:27:42,175   src/ViennaRNA/2Dpfold.c:4243:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,175    4243 |     if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) {
2024-10-11T23:27:42,175         |            ^~
2024-10-11T23:27:42,177   src/ViennaRNA/2Dpfold.c:4243:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:27:42,177    4243 |     if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) {
2024-10-11T23:27:42,177         |                                                        ^~
2024-10-11T23:27:47,574   src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’:
2024-10-11T23:27:47,575   src/ViennaRNA/2Dpfold.c:4392:17: warning: ‘l_max_post_b’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:27:47,575    4392 |   (*max_l)[d1]  = MAX2((*max_l)[d1], d2);
2024-10-11T23:27:47,576   src/ViennaRNA/2Dpfold.c:471:57: note: ‘l_max_post_b’ was declared here
2024-10-11T23:27:47,576     471 |         int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b;
2024-10-11T23:27:47,576         |                                                         ^~~~~~~~~~~~
2024-10-11T23:27:47,577   src/ViennaRNA/2Dpfold.c:4391:17: warning: ‘l_min_post_b’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:27:47,577    4391 |   (*min_l)[d1]  = MIN2((*min_l)[d1], d2);
2024-10-11T23:27:47,577   src/ViennaRNA/2Dpfold.c:471:42: note: ‘l_min_post_b’ was declared here
2024-10-11T23:27:47,577     471 |         int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b;
2024-10-11T23:27:47,577         |                                          ^~~~~~~~~~~~
2024-10-11T23:27:47,578   src/ViennaRNA/2Dpfold.c:4392:17: warning: ‘l_max_post’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:27:47,578    4392 |   (*max_l)[d1]  = MAX2((*max_l)[d1], d2);
2024-10-11T23:27:47,579   src/ViennaRNA/2Dpfold.c:1045:49: note: ‘l_max_post’ was declared here
2024-10-11T23:27:47,579    1045 |       int k_min_post, k_max_post, *l_min_post, *l_max_post;
2024-10-11T23:27:47,579         |                                                 ^~~~~~~~~~
2024-10-11T23:27:47,580   src/ViennaRNA/2Dpfold.c:4391:17: warning: ‘l_min_post’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:27:47,580    4391 |   (*min_l)[d1]  = MIN2((*min_l)[d1], d2);
2024-10-11T23:27:47,580   src/ViennaRNA/2Dpfold.c:1045:36: note: ‘l_min_post’ was declared here
2024-10-11T23:27:47,581    1045 |       int k_min_post, k_max_post, *l_min_post, *l_max_post;
2024-10-11T23:27:47,581         |                                    ^~~~~~~~~~
2024-10-11T23:27:47,581   src/ViennaRNA/2Dpfold.c:718:58: warning: ‘l_max_post_m1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:27:47,581     718 |       int k_min_post_m1, k_max_post_m1, *l_min_post_m1, *l_max_post_m1;
2024-10-11T23:27:47,581         |                                                          ^~~~~~~~~~~~~
2024-10-11T23:27:47,581   src/ViennaRNA/2Dpfold.c:718:42: warning: ‘l_min_post_m1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:27:47,581     718 |       int k_min_post_m1, k_max_post_m1, *l_min_post_m1, *l_max_post_m1;
2024-10-11T23:27:47,581         |                                          ^~~~~~~~~~~~~
2024-10-11T23:27:47,582   src/ViennaRNA/2Dpfold.c:4392:17: warning: ‘l_max_post_m’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:27:47,583    4392 |   (*max_l)[d1]  = MAX2((*max_l)[d1], d2);
2024-10-11T23:27:47,583   src/ViennaRNA/2Dpfold.c:715:55: note: ‘l_max_post_m’ was declared here
2024-10-11T23:27:47,583     715 |       int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m;
2024-10-11T23:27:47,583         |                                                       ^~~~~~~~~~~~
2024-10-11T23:27:47,584   src/ViennaRNA/2Dpfold.c:4391:17: warning: ‘l_min_post_m’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:27:47,584    4391 |   (*min_l)[d1]  = MIN2((*min_l)[d1], d2);
2024-10-11T23:27:47,584   src/ViennaRNA/2Dpfold.c:715:40: note: ‘l_min_post_m’ was declared here
2024-10-11T23:27:47,585     715 |       int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m;
2024-10-11T23:27:47,585         |                                        ^~~~~~~~~~~~
2024-10-11T23:27:51,079   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/ProfileAln.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ProfileAln.o -fopenmp
2024-10-11T23:27:51,767   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/ProfileDist.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ProfileDist.o -fopenmp
2024-10-11T23:27:52,010   src/ViennaRNA/ProfileDist.c: In function ‘PrfEditCost’:
2024-10-11T23:27:52,010   src/ViennaRNA/ProfileDist.c:181:11: warning: ‘dist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:27:52,011     181 |   double  dist;
2024-10-11T23:27:52,011         |           ^~~~
2024-10-11T23:27:52,332   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/RNAstruct.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/RNAstruct.o -fopenmp
2024-10-11T23:27:52,462   src/ViennaRNA/RNAstruct.c: In function ‘b2Shapiro’:
2024-10-11T23:27:52,462   src/ViennaRNA/RNAstruct.c:306:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:27:52,463     306 |         for (k = 0; k < strlen(tt); k++)
2024-10-11T23:27:52,463         |                       ^
2024-10-11T23:27:52,463   src/ViennaRNA/RNAstruct.c:309:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:27:52,463     309 |         for (k = 0; k < strlen(tt); k++)
2024-10-11T23:27:52,464         |                       ^
2024-10-11T23:27:52,466   src/ViennaRNA/RNAstruct.c: In function ‘expand_Shapiro’:
2024-10-11T23:27:52,466   src/ViennaRNA/RNAstruct.c:449:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:27:52,466     449 |   while (i < strlen(structure) - 1) {
2024-10-11T23:27:52,466         |            ^
2024-10-11T23:27:52,469   src/ViennaRNA/RNAstruct.c: In function ‘unexpand_aligned_F’:
2024-10-11T23:27:52,469   src/ViennaRNA/RNAstruct.c:603:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:27:52,469     603 |   for (i = 0, l = 0; i < strlen(align[0]); i++) {
2024-10-11T23:27:52,469         |                        ^
2024-10-11T23:27:53,171   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/ali_plex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ali_plex.o -fopenmp
2024-10-11T23:27:53,377   src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold’:
2024-10-11T23:27:53,377   src/ViennaRNA/ali_plex.c:244:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-10-11T23:27:53,377     244 |     if (strlen(s1[s]) != n3) {
2024-10-11T23:27:53,377         |                       ^~
2024-10-11T23:27:53,377   src/ViennaRNA/ali_plex.c:251:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-10-11T23:27:53,378     251 |     if (strlen(s2[s]) != n4) {
2024-10-11T23:27:53,378         |                       ^~
2024-10-11T23:27:53,384   src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’:
2024-10-11T23:27:53,384   src/ViennaRNA/ali_plex.c:540:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-10-11T23:27:53,384     540 |     if (strlen(s1[s]) != n1) {
2024-10-11T23:27:53,384         |                       ^~
2024-10-11T23:27:53,385   src/ViennaRNA/ali_plex.c:549:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-10-11T23:27:53,385     549 |     if (strlen(s2[s]) != n2) {
2024-10-11T23:27:53,385         |                       ^~
2024-10-11T23:27:54,718   src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold_XS’:
2024-10-11T23:27:54,718   src/ViennaRNA/ali_plex.c:1099:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-10-11T23:27:54,718    1099 |     if (strlen(s1[s]) != n3) {
2024-10-11T23:27:54,718         |                       ^~
2024-10-11T23:27:54,719   src/ViennaRNA/ali_plex.c:1105:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-10-11T23:27:54,719    1105 |     if (strlen(s2[s]) != n4) {
2024-10-11T23:27:54,719         |                       ^~
2024-10-11T23:27:54,731   src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’:
2024-10-11T23:27:54,732   src/ViennaRNA/ali_plex.c:1436:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-10-11T23:27:54,732    1436 |     if (strlen(s1[s]) != n1)
2024-10-11T23:27:54,732         |                       ^~
2024-10-11T23:27:54,733   src/ViennaRNA/ali_plex.c:1439:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-10-11T23:27:54,733    1439 |     if (strlen(s2[s]) != n2)
2024-10-11T23:27:54,733         |                       ^~
2024-10-11T23:27:56,828   src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold’:
2024-10-11T23:27:56,828   src/ViennaRNA/ali_plex.c:436:9: warning: ‘struc’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:27:56,828     436 |         free(struc);
2024-10-11T23:27:56,829         |         ^~~~~~~~~~~
2024-10-11T23:27:56,829   src/ViennaRNA/ali_plex.c:366:22: note: ‘struc’ was declared here
2024-10-11T23:27:56,829     366 |   char  *st1, *st2, *struc;
2024-10-11T23:27:56,829         |                      ^~~~~
2024-10-11T23:27:58,113   src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’:
2024-10-11T23:27:58,113   src/ViennaRNA/ali_plex.c:1004:5: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:27:58,113    1004 |     printf("target upper bound %d: query lower bound %d (%5.2f)\n",
2024-10-11T23:27:58,114         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:27:58,114    1005 |            max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq));
2024-10-11T23:27:58,114         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:27:58,114   src/ViennaRNA/ali_plex.c:497:9: note: ‘max_pos_j’ was declared here
2024-10-11T23:27:58,114     497 |   int   max_pos_j;
2024-10-11T23:27:58,114         |         ^~~~~~~~~
2024-10-11T23:27:58,114   src/ViennaRNA/ali_plex.c:1004:5: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:27:58,115    1004 |     printf("target upper bound %d: query lower bound %d (%5.2f)\n",
2024-10-11T23:27:58,115         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:27:58,115    1005 |            max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq));
2024-10-11T23:27:58,115         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:27:58,115   src/ViennaRNA/ali_plex.c:496:9: note: ‘max_pos’ was declared here
2024-10-11T23:27:58,115     496 |   int   max_pos;                                    /* get position of the best hit */
2024-10-11T23:27:58,115         |         ^~~~~~~
2024-10-11T23:27:58,116   src/ViennaRNA/ali_plex.c:847:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:27:58,116     847 |     position_j[i + delta] = min_j_colonne;
2024-10-11T23:27:58,116         |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2024-10-11T23:27:59,216   src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’:
2024-10-11T23:27:59,217   src/ViennaRNA/ali_plex.c:1901:5: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:27:59,217    1901 |     printf("target upper bound %d: query lower bound %d (%5.2f)\n",
2024-10-11T23:27:59,217         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:27:59,217    1902 |            max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq));
2024-10-11T23:27:59,217         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:27:59,217   src/ViennaRNA/ali_plex.c:1369:9: note: ‘max_pos_j’ was declared here
2024-10-11T23:27:59,217    1369 |   int   max_pos_j;
2024-10-11T23:27:59,217         |         ^~~~~~~~~
2024-10-11T23:27:59,218   src/ViennaRNA/ali_plex.c:1901:5: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:27:59,218    1901 |     printf("target upper bound %d: query lower bound %d (%5.2f)\n",
2024-10-11T23:27:59,218         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:27:59,218    1902 |            max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq));
2024-10-11T23:27:59,218         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:27:59,219   src/ViennaRNA/ali_plex.c:1368:9: note: ‘max_pos’ was declared here
2024-10-11T23:27:59,219    1368 |   int   max_pos;                  /* get position of the best hit */
2024-10-11T23:27:59,219         |         ^~~~~~~
2024-10-11T23:27:59,220   src/ViennaRNA/ali_plex.c:1725:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:27:59,220    1725 |     position_j[i + delta] = min_j_colonne;
2024-10-11T23:27:59,220         |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2024-10-11T23:28:00,279   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/backtrack/bt_exterior.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/backtrack/bt_exterior.o -fopenmp
2024-10-11T23:28:00,485   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/backtrack/bt_exterior_f3.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/backtrack/bt_exterior_f3.o -fopenmp
2024-10-11T23:28:01,978   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/backtrack/bt_exterior_f5.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/backtrack/bt_exterior_f5.o -fopenmp
2024-10-11T23:28:03,147   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/backtrack/bt_gquad.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/backtrack/bt_gquad.o -fopenmp
2024-10-11T23:28:04,275   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/backtrack/bt_hairpin.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/backtrack/bt_hairpin.o -fopenmp
2024-10-11T23:28:04,580   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/backtrack/bt_internal.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/backtrack/bt_internal.o -fopenmp
2024-10-11T23:28:07,281   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/backtrack/bt_multibranch.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/backtrack/bt_multibranch.o -fopenmp
2024-10-11T23:28:11,114   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/c_plex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/c_plex.o -fopenmp
2024-10-11T23:28:11,323   src/ViennaRNA/c_plex.c: In function ‘duplexfold_CXS’:
2024-10-11T23:28:11,323   src/ViennaRNA/c_plex.c:368:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:28:11,323     368 |   int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x;
2024-10-11T23:28:11,323         |                                         ^~~~~~~
2024-10-11T23:28:11,341   src/ViennaRNA/c_plex.c: In function ‘find_max_CXS’:
2024-10-11T23:28:11,341   src/ViennaRNA/c_plex.c:960:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:28:11,341     960 |           if (dL <= strlen(test.structure) - l1 - 1) {
2024-10-11T23:28:11,341         |                  ^~
2024-10-11T23:28:11,342   src/ViennaRNA/c_plex.c: In function ‘plot_max_CXS’:
2024-10-11T23:28:11,343   src/ViennaRNA/c_plex.c:1011:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:28:11,343    1011 |     if (dL <= strlen(test.structure) - l1 - 1)
2024-10-11T23:28:11,343         |            ^~
2024-10-11T23:28:11,348   src/ViennaRNA/c_plex.c: In function ‘duplexfold_C’:
2024-10-11T23:28:11,349   src/ViennaRNA/c_plex.c:1032:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:28:11,349    1032 |   int       i, j, l1, Emin = INF, i_min = 0, j_min = 0;
2024-10-11T23:28:11,349         |                   ^~
2024-10-11T23:28:11,369   src/ViennaRNA/c_plex.c: In function ‘find_max_C’:
2024-10-11T23:28:11,369   src/ViennaRNA/c_plex.c:1662:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:28:11,370    1662 |           if (dL <= strlen(test.structure) - l1 - 1) {
2024-10-11T23:28:11,370         |                  ^~
2024-10-11T23:28:11,371   src/ViennaRNA/c_plex.c: In function ‘plot_max_C’:
2024-10-11T23:28:11,372   src/ViennaRNA/c_plex.c:1716:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:28:11,372    1716 |     if (dL <= strlen(test.structure) - l1 - 1) {
2024-10-11T23:28:11,372         |            ^~
2024-10-11T23:28:13,250   src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’:
2024-10-11T23:28:13,250   src/ViennaRNA/c_plex.c:996:73: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:28:13,250     996 |     int   end_q             = MIN2(n2 - 9, max_pos_j + alignment_length - 2);
2024-10-11T23:28:13,250         |                                                                         ^
2024-10-11T23:28:13,250   src/ViennaRNA/c_plex.c:543:13: note: ‘max_pos_j’ was declared here
2024-10-11T23:28:13,251     543 |   int       max_pos_j;
2024-10-11T23:28:13,251         |             ^~~~~~~~~
2024-10-11T23:28:13,251   src/ViennaRNA/c_plex.c:997:72: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:28:13,251     997 |     char  *s3               = (char *)vrna_alloc(sizeof(char) * (end_t - begin_t + 2));
2024-10-11T23:28:13,251         |                                                                  ~~~~~~^~~~~~~~~
2024-10-11T23:28:13,251   src/ViennaRNA/c_plex.c:542:13: note: ‘max_pos’ was declared here
2024-10-11T23:28:13,251     542 |   int       max_pos;                  /* get position of the best hit */
2024-10-11T23:28:13,252         |             ^~~~~~~
2024-10-11T23:28:13,252   src/ViennaRNA/c_plex.c:819:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:28:13,252     819 |     position_j[i + delta] = min_j_colonne;
2024-10-11T23:28:13,252         |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2024-10-11T23:28:14,478   src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_C’:
2024-10-11T23:28:14,478   src/ViennaRNA/c_plex.c:1700:55: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:28:14,479    1700 |     int     end_t             = MIN2(n1 - 10, max_pos + 1);
2024-10-11T23:28:14,479         |                                                       ^
2024-10-11T23:28:14,479   src/ViennaRNA/c_plex.c:1296:7: note: ‘max_pos’ was declared here
2024-10-11T23:28:14,479    1296 |   int max_pos;                                    /* get position of the best hit */
2024-10-11T23:28:14,480         |       ^~~~~~~
2024-10-11T23:28:15,433   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/combinatorics/combinatorics.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/combinatorics/combinatorics.o -fopenmp
2024-10-11T23:28:16,119   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/concentrations.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/concentrations.o -fopenmp
2024-10-11T23:28:16,443   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/constraints.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/constraints.o -fopenmp
2024-10-11T23:28:16,680   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/hard.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/hard.o -fopenmp
2024-10-11T23:28:19,281   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/ligand.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/ligand.o -fopenmp
2024-10-11T23:28:20,104   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/sc_cb_mod.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/sc_cb_mod.o -fopenmp
2024-10-11T23:28:20,266   src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_stacks’:
2024-10-11T23:28:20,266   src/ViennaRNA/constraints/sc_cb_mod.c:761:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:28:20,266     761 |   char          nt[MAX_ALPHABET] = {
2024-10-11T23:28:20,266         |                 ^~
2024-10-11T23:28:20,268   src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_mismatches’:
2024-10-11T23:28:20,268   src/ViennaRNA/constraints/sc_cb_mod.c:858:17: warning: variable ‘bp’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:28:20,268     858 |   char          bp[3] = {
2024-10-11T23:28:20,268         |                 ^~
2024-10-11T23:28:20,270   src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_dangles’:
2024-10-11T23:28:20,270   src/ViennaRNA/constraints/sc_cb_mod.c:963:17: warning: variable ‘bp’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:28:20,270     963 |   char          bp[3] = {
2024-10-11T23:28:20,270         |                 ^~
2024-10-11T23:28:20,271   src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_terminal’:
2024-10-11T23:28:20,271   src/ViennaRNA/constraints/sc_cb_mod.c:1072:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:28:20,272    1072 |   char          nt[MAX_ALPHABET] = {
2024-10-11T23:28:20,272         |                 ^~
2024-10-11T23:28:22,108   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/sc_cb_mod_parser.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/sc_cb_mod_parser.o -fopenmp
2024-10-11T23:28:22,744   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/sc_cb_mod_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/sc_cb_mod_wrappers.o -fopenmp
2024-10-11T23:28:29,324   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/soft.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/soft.o -fopenmp
2024-10-11T23:28:31,696   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/soft_cb_multi.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/soft_cb_multi.o -fopenmp
2024-10-11T23:28:32,499   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/array.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/array.o -fopenmp
2024-10-11T23:28:32,672   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/basic_datastructures.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/basic_datastructures.o -fopenmp
2024-10-11T23:28:32,972   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/char_stream.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/char_stream.o -fopenmp
2024-10-11T23:28:33,517   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/dp_matrices.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/dp_matrices.o -fopenmp
2024-10-11T23:28:35,110   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/hash_tables.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/hash_tables.o -fopenmp
2024-10-11T23:28:35,532   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/heap.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/heap.o -fopenmp
2024-10-11T23:28:35,963   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/lists.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/lists.o -fopenmp
2024-10-11T23:28:36,231   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/sparse_mx.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/sparse_mx.o -fopenmp
2024-10-11T23:28:36,844   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/stream_output.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/stream_output.o -fopenmp
2024-10-11T23:28:37,135   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/string.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/string.o -fopenmp
2024-10-11T23:28:37,399   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/dist_vars.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/dist_vars.o -fopenmp
2024-10-11T23:28:37,464   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/duplex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/duplex.o -fopenmp
2024-10-11T23:28:37,680   src/ViennaRNA/duplex.c: In function ‘aliduplexfold_cu’:
2024-10-11T23:28:37,680   src/ViennaRNA/duplex.c:460:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-10-11T23:28:37,680     460 |     if (strlen(s1[s]) != n1) {
2024-10-11T23:28:37,680         |                       ^~
2024-10-11T23:28:37,681   src/ViennaRNA/duplex.c:467:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-10-11T23:28:37,681     467 |     if (strlen(s2[s]) != n2) {
2024-10-11T23:28:37,681         |                       ^~
2024-10-11T23:28:37,684   src/ViennaRNA/duplex.c: In function ‘aliduplex_subopt’:
2024-10-11T23:28:37,684   src/ViennaRNA/duplex.c:589:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-10-11T23:28:37,684     589 |     if (strlen(s1[s]) != n1) {
2024-10-11T23:28:37,684         |                       ^~
2024-10-11T23:28:37,685   src/ViennaRNA/duplex.c:596:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-10-11T23:28:37,685     596 |     if (strlen(s2[s]) != n2) {
2024-10-11T23:28:37,685         |                       ^~
2024-10-11T23:28:38,080   src/ViennaRNA/duplex.c: In function ‘alibacktrack’:
2024-10-11T23:28:38,080   src/ViennaRNA/duplex.c:756:9: warning: ‘struc’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:28:38,080     756 |         free(struc);
2024-10-11T23:28:38,080         |         ^~~~~~~~~~~
2024-10-11T23:28:39,674   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/eval/eval_covariance.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval/eval_covariance.o -fopenmp
2024-10-11T23:28:40,033   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/eval/eval_exterior.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval/eval_exterior.o -fopenmp
2024-10-11T23:28:40,752   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/eval/eval_gquad.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval/eval_gquad.o -fopenmp
2024-10-11T23:28:41,403   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/eval/eval_hairpin.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval/eval_hairpin.o -fopenmp
2024-10-11T23:28:42,656   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/eval/eval_internal.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval/eval_internal.o -fopenmp
2024-10-11T23:28:45,427   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/eval/eval_multibranch.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval/eval_multibranch.o -fopenmp
2024-10-11T23:28:45,704   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/eval/eval_structures.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval/eval_structures.o -fopenmp
2024-10-11T23:28:49,228   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/eval/eval_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval/eval_wrappers.o -fopenmp
2024-10-11T23:28:49,921   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/eval/exp_eval_exterior.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval/exp_eval_exterior.o -fopenmp
2024-10-11T23:28:50,202   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/eval/exp_eval_hairpin.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval/exp_eval_hairpin.o -fopenmp
2024-10-11T23:28:51,480   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/eval/exp_eval_internal.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval/exp_eval_internal.o -fopenmp
2024-10-11T23:28:54,079   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/eval/exp_eval_multibranch.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval/exp_eval_multibranch.o -fopenmp
2024-10-11T23:28:54,324   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/fold_compound.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/fold_compound.o -fopenmp
2024-10-11T23:28:55,190   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/grammar/gr_extension_mfe.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/grammar/gr_extension_mfe.o -fopenmp
2024-10-11T23:28:55,508   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/grammar/gr_extension_pf.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/grammar/gr_extension_pf.o -fopenmp
2024-10-11T23:28:55,819   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/grammar/grammar.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/grammar/grammar.o -fopenmp
2024-10-11T23:28:56,373   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/heat_capacity.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/heat_capacity.o -fopenmp
2024-10-11T23:28:56,703   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/inverse/inverse.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/inverse/inverse.o -fopenmp
2024-10-11T23:28:56,920   src/ViennaRNA/inverse/inverse.c: In function ‘adaptive_walk’:
2024-10-11T23:28:56,920   src/ViennaRNA/inverse/inverse.c:118:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-10-11T23:28:56,920     118 |   if (strlen(target) != len) {
2024-10-11T23:28:56,921         |                      ^~
2024-10-11T23:28:56,925   src/ViennaRNA/inverse/inverse.c: In function ‘make_ptable’:
2024-10-11T23:28:56,925   src/ViennaRNA/inverse/inverse.c:346:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:28:56,925     346 |   for (i = 0; i < strlen(structure); i++) {
2024-10-11T23:28:56,925         |                 ^
2024-10-11T23:28:56,925   src/ViennaRNA/inverse/inverse.c: In function ‘inverse_fold’:
2024-10-11T23:28:56,926   src/ViennaRNA/inverse/inverse.c:401:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-10-11T23:28:56,926     401 |   if (strlen(start) != len) {
2024-10-11T23:28:56,926         |                     ^~
2024-10-11T23:28:56,929   src/ViennaRNA/inverse/inverse.c: In function ‘make_start’:
2024-10-11T23:28:56,929   src/ViennaRNA/inverse/inverse.c:525:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:28:56,930     525 |   for (i = 0; i < strlen(start); i++)
2024-10-11T23:28:56,930         |                 ^
2024-10-11T23:28:56,930   src/ViennaRNA/inverse/inverse.c:527:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:28:56,930     527 |   for (i = 0; i < strlen(symbolset); i++)
2024-10-11T23:28:56,930         |                 ^
2024-10-11T23:28:57,679   src/ViennaRNA/inverse/inverse.c: In function ‘inverse_fold’:
2024-10-11T23:28:57,679   src/ViennaRNA/inverse/inverse.c:378:5: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
2024-10-11T23:28:57,679     378 |     strncpy(wstruct, structure + i, j - i + 1); \
2024-10-11T23:28:57,680         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:28:57,680   src/ViennaRNA/inverse/inverse.c:434:7: note: in expansion of macro ‘WALK’
2024-10-11T23:28:57,680     434 |       WALK(0, len - 1);
2024-10-11T23:28:57,680         |       ^~~~
2024-10-11T23:28:57,680   src/ViennaRNA/inverse/inverse.c:400:9: note: length computed here
2024-10-11T23:28:57,680     400 |   len = strlen(structure);
2024-10-11T23:28:57,680         |         ^~~~~~~~~~~~~~~~~
2024-10-11T23:28:57,924   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/io/commands.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io/commands.o -fopenmp
2024-10-11T23:28:58,108   src/ViennaRNA/io/commands.c: In function ‘parse_constraints_line’:
2024-10-11T23:28:58,109   src/ViennaRNA/io/commands.c:818:37: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=]
2024-10-11T23:28:58,109     818 |          (sscanf(line + pos, "%15s%ln", &buf[0], &pp) == 1)) {
2024-10-11T23:28:58,109         |                                   ~~^            ~~~
2024-10-11T23:28:58,109         |                                     |            |
2024-10-11T23:28:58,109         |                                     long int *   size_t * {aka unsigned int *}
2024-10-11T23:28:58,110         |                                   %n
2024-10-11T23:28:58,110   src/ViennaRNA/io/commands.c:822:33: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 5 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=]
2024-10-11T23:28:58,110     822 |         if (sscanf(buf, "%d-%d%ln", &v1, &v2, &pp) == 2) {
2024-10-11T23:28:58,110         |                               ~~^             ~~~
2024-10-11T23:28:58,110         |                                 |             |
2024-10-11T23:28:58,110         |                                 long int *    size_t * {aka unsigned int *}
2024-10-11T23:28:58,110         |                               %n
2024-10-11T23:28:58,111   src/ViennaRNA/io/commands.c:830:37: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=]
2024-10-11T23:28:58,111     830 |         } else if (sscanf(buf, "%d%ln", &v1, &pp) == 1) {
2024-10-11T23:28:58,111         |                                   ~~^        ~~~
2024-10-11T23:28:58,111         |                                     |        |
2024-10-11T23:28:58,111         |                                     |        size_t * {aka unsigned int *}
2024-10-11T23:28:58,111         |                                     long int *
2024-10-11T23:28:58,111         |                                   %n
2024-10-11T23:28:58,112   src/ViennaRNA/io/commands.c:840:33: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 5 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=]
2024-10-11T23:28:58,112     840 |         if (sscanf(buf, "%d-%d%ln", &v1, &v2, &pp) == 2) {
2024-10-11T23:28:58,112         |                               ~~^             ~~~
2024-10-11T23:28:58,112         |                                 |             |
2024-10-11T23:28:58,112         |                                 long int *    size_t * {aka unsigned int *}
2024-10-11T23:28:58,112         |                               %n
2024-10-11T23:28:58,113   src/ViennaRNA/io/commands.c:851:32: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=]
2024-10-11T23:28:58,113     851 |           if (sscanf(buf, "%d%ln", &v1, &pp) == 1) {
2024-10-11T23:28:58,113         |                              ~~^        ~~~
2024-10-11T23:28:58,113         |                                |        |
2024-10-11T23:28:58,113         |                                |        size_t * {aka unsigned int *}
2024-10-11T23:28:58,113         |                                long int *
2024-10-11T23:28:58,113         |                              %n
2024-10-11T23:28:58,114   src/ViennaRNA/io/commands.c:857:37: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=]
2024-10-11T23:28:58,114     857 |         } else if (sscanf(buf, "%d%ln", &v1, &pp) == 1) {
2024-10-11T23:28:58,114         |                                   ~~^        ~~~
2024-10-11T23:28:58,114         |                                     |        |
2024-10-11T23:28:58,114         |                                     |        size_t * {aka unsigned int *}
2024-10-11T23:28:58,114         |                                     long int *
2024-10-11T23:28:58,114         |                                   %n
2024-10-11T23:28:58,115   src/ViennaRNA/io/commands.c:869:32: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=]
2024-10-11T23:28:58,115     869 |           if (sscanf(buf, "%d%ln", &v1, &pp) == 1) {
2024-10-11T23:28:58,116         |                              ~~^        ~~~
2024-10-11T23:28:58,116         |                                |        |
2024-10-11T23:28:58,116         |                                |        size_t * {aka unsigned int *}
2024-10-11T23:28:58,116         |                                long int *
2024-10-11T23:28:58,116         |                              %n
2024-10-11T23:28:58,116   src/ViennaRNA/io/commands.c:886:32: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=]
2024-10-11T23:28:58,116     886 |           if (sscanf(buf, "%g%ln", &energy, &pp) == 1) {
2024-10-11T23:28:58,117         |                              ~~^            ~~~
2024-10-11T23:28:58,117         |                                |            |
2024-10-11T23:28:58,117         |                                long int *   size_t * {aka unsigned int *}
2024-10-11T23:28:58,117         |                              %n
2024-10-11T23:28:58,117   src/ViennaRNA/io/commands.c:894:33: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=]
2024-10-11T23:28:58,117     894 |           if (sscanf(buf, "%8s%ln", &buf2[0], &pp) == 1) {
2024-10-11T23:28:58,118         |                               ~~^             ~~~
2024-10-11T23:28:58,118         |                                 |             |
2024-10-11T23:28:58,118         |                                 long int *    size_t * {aka unsigned int *}
2024-10-11T23:28:58,118         |                               %n
2024-10-11T23:28:58,754   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/io/file_formats.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io/file_formats.o -fopenmp
2024-10-11T23:28:58,945   src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect’:
2024-10-11T23:28:58,945   src/ViennaRNA/io/file_formats.c:202:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:28:58,945     202 |   for (i = 0; i < strlen(seq) - 1; i++) {
2024-10-11T23:28:58,945         |                 ^
2024-10-11T23:28:58,950   src/ViennaRNA/io/file_formats.c: In function ‘vrna_extract_record_rest_structure’:
2024-10-11T23:28:58,951   src/ViennaRNA/io/file_formats.c:600:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:28:58,951     600 |       if ((length > 0) && (r - 1 == length))
2024-10-11T23:28:58,951         |                                  ^~
2024-10-11T23:28:58,960   src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’:
2024-10-11T23:28:58,960   src/ViennaRNA/io/file_formats.c:919:29: warning: variable ‘tok4’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:28:58,961     919 |   long          tok1, tok3, tok4, tok5, tok6;
2024-10-11T23:28:58,961         |                             ^~~~
2024-10-11T23:28:59,829   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/io/file_formats_msa.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io/file_formats_msa.o -fopenmp
2024-10-11T23:29:00,013   src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_stockholm_alignment’:
2024-10-11T23:29:00,014   src/ViennaRNA/io/file_formats_msa.c:654:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:29:00,014     654 |             for (i = 0; i < strlen(tmp_seq); i++)
2024-10-11T23:29:00,014         |                           ^
2024-10-11T23:29:00,018   src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_clustal_alignment’:
2024-10-11T23:29:00,018   src/ViennaRNA/io/file_formats_msa.c:903:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:29:00,018     903 |       for (i = 0; i < strlen(seq); i++)
2024-10-11T23:29:00,018         |                     ^
2024-10-11T23:29:00,764   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/io/io_utils.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io/io_utils.o -fopenmp
2024-10-11T23:29:01,099   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/io/sanitize.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io/sanitize.o -fopenmp
2024-10-11T23:29:01,279   src/ViennaRNA/io/sanitize.c: In function ‘sanitize_input’:
2024-10-11T23:29:01,279   src/ViennaRNA/io/sanitize.c:570:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:01,279     570 |             if ((j == 0) && (i >= hpos) && (i < (hpos + injector_len))) {
2024-10-11T23:29:01,279         |                                               ^
2024-10-11T23:29:01,281   src/ViennaRNA/io/sanitize.c:706:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:01,281     706 |                     if (hpos < (79 - injector_len))
2024-10-11T23:29:01,281         |                              ^
2024-10-11T23:29:04,324   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/findpath.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/findpath.o -fopenmp
2024-10-11T23:29:05,053   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/local_neighbors.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/local_neighbors.o -fopenmp
2024-10-11T23:29:05,176   src/ViennaRNA/landscape/local_neighbors.c: In function ‘insertions’:
2024-10-11T23:29:05,177   src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:05,177      25 |       if (ptable[idx] > idx) { \
2024-10-11T23:29:05,177         |                       ^
2024-10-11T23:29:05,177   src/ViennaRNA/landscape/local_neighbors.c:351:5: note: in expansion of macro ‘FOR_UNPAIRED’
2024-10-11T23:29:05,177     351 |     FOR_UNPAIRED(pt, i, i = first_i, i <= last_i, i++, {
2024-10-11T23:29:05,177         |     ^~~~~~~~~~~~
2024-10-11T23:29:05,177   src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:05,178      25 |       if (ptable[idx] > idx) { \
2024-10-11T23:29:05,178         |                       ^
2024-10-11T23:29:05,178   src/ViennaRNA/landscape/local_neighbors.c:27:16: note: in definition of macro ‘FOR_UNPAIRED’
2024-10-11T23:29:05,178      27 |       } else { code } \
2024-10-11T23:29:05,178         |                ^~~~
2024-10-11T23:29:05,178   src/ViennaRNA/landscape/local_neighbors.c:352:7: note: in expansion of macro ‘FOR_UNPAIRED’
2024-10-11T23:29:05,178     352 |       FOR_UNPAIRED(pt, j, j = i + 1, j <= last_j, j++, {
2024-10-11T23:29:05,179         |       ^~~~~~~~~~~~
2024-10-11T23:29:05,179   src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:05,179      25 |       if (ptable[idx] > idx) { \
2024-10-11T23:29:05,179         |                       ^
2024-10-11T23:29:05,179   src/ViennaRNA/landscape/local_neighbors.c:358:5: note: in expansion of macro ‘FOR_UNPAIRED’
2024-10-11T23:29:05,179     358 |     FOR_UNPAIRED(pt, i, i = first_i, i <= last_i, i++, {
2024-10-11T23:29:05,179         |     ^~~~~~~~~~~~
2024-10-11T23:29:05,180   src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:05,180      25 |       if (ptable[idx] > idx) { \
2024-10-11T23:29:05,180         |                       ^
2024-10-11T23:29:05,180   src/ViennaRNA/landscape/local_neighbors.c:27:16: note: in definition of macro ‘FOR_UNPAIRED’
2024-10-11T23:29:05,180      27 |       } else { code } \
2024-10-11T23:29:05,180         |                ^~~~
2024-10-11T23:29:05,180   src/ViennaRNA/landscape/local_neighbors.c:359:7: note: in expansion of macro ‘FOR_UNPAIRED’
2024-10-11T23:29:05,180     359 |       FOR_UNPAIRED(pt, j, j = first_j, j <= last_j, j++, {
2024-10-11T23:29:05,181         |       ^~~~~~~~~~~~
2024-10-11T23:29:05,181   src/ViennaRNA/landscape/local_neighbors.c: In function ‘deletion_range’:
2024-10-11T23:29:05,181   src/ViennaRNA/landscape/local_neighbors.c:32:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:05,181      32 |       if (ptable[idx] > idx) { \
2024-10-11T23:29:05,181         |                       ^
2024-10-11T23:29:05,181   src/ViennaRNA/landscape/local_neighbors.c:379:3: note: in expansion of macro ‘FOR_PAIRED’
2024-10-11T23:29:05,181     379 |   FOR_PAIRED(pt, i, i = start, i <= stop, i++, {
2024-10-11T23:29:05,182         |   ^~~~~~~~~~
2024-10-11T23:29:05,182   src/ViennaRNA/landscape/local_neighbors.c: In function ‘shift_pos’:
2024-10-11T23:29:05,182   src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:05,182      25 |       if (ptable[idx] > idx) { \
2024-10-11T23:29:05,182         |                       ^
2024-10-11T23:29:05,182   src/ViennaRNA/landscape/local_neighbors.c:398:5: note: in expansion of macro ‘FOR_UNPAIRED’
2024-10-11T23:29:05,182     398 |     FOR_UNPAIRED(pt, k, k = start, k <= end, k++, {
2024-10-11T23:29:05,182         |     ^~~~~~~~~~~~
2024-10-11T23:29:05,182   src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:05,183      25 |       if (ptable[idx] > idx) { \
2024-10-11T23:29:05,183         |                       ^
2024-10-11T23:29:05,183   src/ViennaRNA/landscape/local_neighbors.c:403:5: note: in expansion of macro ‘FOR_UNPAIRED’
2024-10-11T23:29:05,183     403 |     FOR_UNPAIRED(pt, k, k = start, k <= end, k++, {
2024-10-11T23:29:05,183         |     ^~~~~~~~~~~~
2024-10-11T23:29:05,183   src/ViennaRNA/landscape/local_neighbors.c: In function ‘shift_both’:
2024-10-11T23:29:05,183   src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:05,183      25 |       if (ptable[idx] > idx) { \
2024-10-11T23:29:05,184         |                       ^
2024-10-11T23:29:05,184   src/ViennaRNA/landscape/local_neighbors.c:425:5: note: in expansion of macro ‘FOR_UNPAIRED’
2024-10-11T23:29:05,184     425 |     FOR_UNPAIRED(pt, k, k = start, k <= end, k++, {
2024-10-11T23:29:05,184         |     ^~~~~~~~~~~~
2024-10-11T23:29:05,184   src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:05,184      25 |       if (ptable[idx] > idx) { \
2024-10-11T23:29:05,184         |                       ^
2024-10-11T23:29:05,185   src/ViennaRNA/landscape/local_neighbors.c:433:5: note: in expansion of macro ‘FOR_UNPAIRED’
2024-10-11T23:29:05,185     433 |     FOR_UNPAIRED(pt, k, k = start, k <= end, k++, {
2024-10-11T23:29:05,185         |     ^~~~~~~~~~~~
2024-10-11T23:29:05,185   src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:05,185      25 |       if (ptable[idx] > idx) { \
2024-10-11T23:29:05,185         |                       ^
2024-10-11T23:29:05,185   src/ViennaRNA/landscape/local_neighbors.c:441:5: note: in expansion of macro ‘FOR_UNPAIRED’
2024-10-11T23:29:05,185     441 |     FOR_UNPAIRED(pt, k, k = start, k <= end, k++, {
2024-10-11T23:29:05,186         |     ^~~~~~~~~~~~
2024-10-11T23:29:05,186   src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_local_nb_insertion’:
2024-10-11T23:29:05,186   src/ViennaRNA/landscape/local_neighbors.c:463:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable]
2024-10-11T23:29:05,186     463 |   int           min_loop_size = fc->params->model_details.min_loop_size;
2024-10-11T23:29:05,186         |                 ^~~~~~~~~~~~~
2024-10-11T23:29:05,186   src/ViennaRNA/landscape/local_neighbors.c:462:23: warning: unused variable ‘k’ [-Wunused-variable]
2024-10-11T23:29:05,186     462 |   int           i, j, k, mi, mj, enc5, enc3;
2024-10-11T23:29:05,186         |                       ^
2024-10-11T23:29:05,187   src/ViennaRNA/landscape/local_neighbors.c:462:20: warning: unused variable ‘j’ [-Wunused-variable]
2024-10-11T23:29:05,187     462 |   int           i, j, k, mi, mj, enc5, enc3;
2024-10-11T23:29:05,187         |                    ^
2024-10-11T23:29:05,187   src/ViennaRNA/landscape/local_neighbors.c:461:17: warning: unused variable ‘n’ [-Wunused-variable]
2024-10-11T23:29:05,187     461 |   unsigned int  n = fc->length;
2024-10-11T23:29:05,187         |                 ^
2024-10-11T23:29:05,187   src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_local_nb_deletion’:
2024-10-11T23:29:05,187   src/ViennaRNA/landscape/local_neighbors.c:578:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable]
2024-10-11T23:29:05,188     578 |   int           min_loop_size = fc->params->model_details.min_loop_size;
2024-10-11T23:29:05,188         |                 ^~~~~~~~~~~~~
2024-10-11T23:29:05,188   src/ViennaRNA/landscape/local_neighbors.c:577:23: warning: unused variable ‘k’ [-Wunused-variable]
2024-10-11T23:29:05,188     577 |   int           i, j, k, enc5, enc3;
2024-10-11T23:29:05,188         |                       ^
2024-10-11T23:29:05,188   src/ViennaRNA/landscape/local_neighbors.c:577:20: warning: unused variable ‘j’ [-Wunused-variable]
2024-10-11T23:29:05,188     577 |   int           i, j, k, enc5, enc3;
2024-10-11T23:29:05,188         |                    ^
2024-10-11T23:29:05,189   src/ViennaRNA/landscape/local_neighbors.c:576:17: warning: unused variable ‘n’ [-Wunused-variable]
2024-10-11T23:29:05,189     576 |   unsigned int  n = fc->length;
2024-10-11T23:29:05,189         |                 ^
2024-10-11T23:29:05,194   src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_conflicts_local_nb_insertion’:
2024-10-11T23:29:05,195   src/ViennaRNA/landscape/local_neighbors.c:970:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable]
2024-10-11T23:29:05,195     970 |   int           min_loop_size = fc->params->model_details.min_loop_size;
2024-10-11T23:29:05,195         |                 ^~~~~~~~~~~~~
2024-10-11T23:29:05,195   src/ViennaRNA/landscape/local_neighbors.c:968:17: warning: unused variable ‘n’ [-Wunused-variable]
2024-10-11T23:29:05,195     968 |   unsigned int  n = fc->length;
2024-10-11T23:29:05,195         |                 ^
2024-10-11T23:29:05,196   src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_conflicts_local_nb_deletion’:
2024-10-11T23:29:05,196   src/ViennaRNA/landscape/local_neighbors.c:1073:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable]
2024-10-11T23:29:05,196    1073 |   int           min_loop_size = fc->params->model_details.min_loop_size;
2024-10-11T23:29:05,196         |                 ^~~~~~~~~~~~~
2024-10-11T23:29:05,197   src/ViennaRNA/landscape/local_neighbors.c:1072:20: warning: unused variable ‘j’ [-Wunused-variable]
2024-10-11T23:29:05,197    1072 |   int           i, j, enc5, enc3;
2024-10-11T23:29:05,197         |                    ^
2024-10-11T23:29:05,197   src/ViennaRNA/landscape/local_neighbors.c:1072:17: warning: unused variable ‘i’ [-Wunused-variable]
2024-10-11T23:29:05,197    1072 |   int           i, j, enc5, enc3;
2024-10-11T23:29:05,197         |                 ^
2024-10-11T23:29:05,198   src/ViennaRNA/landscape/local_neighbors.c:1071:17: warning: unused variable ‘n’ [-Wunused-variable]
2024-10-11T23:29:05,198    1071 |   unsigned int  n = fc->length;
2024-10-11T23:29:05,198         |                 ^
2024-10-11T23:29:05,203   src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_conflicts_local_nb_shift’:
2024-10-11T23:29:05,203   src/ViennaRNA/landscape/local_neighbors.c:1100:17: warning: unused variable ‘n’ [-Wunused-variable]
2024-10-11T23:29:05,204    1100 |   unsigned int  n = fc->length;
2024-10-11T23:29:05,204         |                 ^
2024-10-11T23:29:07,783   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/move.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/move.o -fopenmp
2024-10-11T23:29:08,070   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/neighbor.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/neighbor.o -fopenmp
2024-10-11T23:29:08,223   In file included from src/ViennaRNA/pair_mat.h:5,
2024-10-11T23:29:08,223                    from src/ViennaRNA/landscape/neighbor.c:6:
2024-10-11T23:29:08,223   src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_right’:
2024-10-11T23:29:08,223   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:29:08,224     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:29:08,224         |                              ^
2024-10-11T23:29:08,224   src/ViennaRNA/landscape/neighbor.c:373:17: note: in expansion of macro ‘MIN2’
2024-10-11T23:29:08,224     373 |   int length  = MIN2(vc->length + 1, end);
2024-10-11T23:29:08,224         |                 ^~~~
2024-10-11T23:29:08,224   src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:29:08,224     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:29:08,225         |                                            ^~~
2024-10-11T23:29:08,225   src/ViennaRNA/landscape/neighbor.c:373:17: note: in expansion of macro ‘MIN2’
2024-10-11T23:29:08,225     373 |   int length  = MIN2(vc->length + 1, end);
2024-10-11T23:29:08,225         |                 ^~~~
2024-10-11T23:29:08,225   src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_i_from_right’:
2024-10-11T23:29:08,225   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:29:08,225     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:29:08,226         |                              ^
2024-10-11T23:29:08,226   src/ViennaRNA/landscape/neighbor.c:501:17: note: in expansion of macro ‘MIN2’
2024-10-11T23:29:08,226     501 |   int length  = MIN2(vc->length, end);
2024-10-11T23:29:08,226         |                 ^~~~
2024-10-11T23:29:08,226   src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:29:08,226     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:29:08,226         |                                            ^~~
2024-10-11T23:29:08,227   src/ViennaRNA/landscape/neighbor.c:501:17: note: in expansion of macro ‘MIN2’
2024-10-11T23:29:08,227     501 |   int length  = MIN2(vc->length, end);
2024-10-11T23:29:08,227         |                 ^~~~
2024-10-11T23:29:08,241   src/ViennaRNA/landscape/neighbor.c: In function ‘move_nxt_val_bp_right’:
2024-10-11T23:29:08,241   src/ViennaRNA/landscape/neighbor.c:1720:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:29:08,242    1720 |     while (j <= length && pt[j] > j)              // '('
2024-10-11T23:29:08,242         |              ^~
2024-10-11T23:29:08,243   src/ViennaRNA/landscape/neighbor.c:1722:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:29:08,243    1722 |     if (j > length || (pt[j] <= j && pt[j] > 0))  // ')'  /* here, the current loop ends */
2024-10-11T23:29:08,243         |           ^
2024-10-11T23:29:08,243   src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpins’:
2024-10-11T23:29:08,244   src/ViennaRNA/landscape/neighbor.c:1750:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:08,244    1750 |   for (i = 1; i <= vc->length; i++)
2024-10-11T23:29:08,244         |                 ^~
2024-10-11T23:29:08,246   src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpdel’:
2024-10-11T23:29:08,247   src/ViennaRNA/landscape/neighbor.c:1835:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:08,247    1835 |   for (i = 1; i <= vc->length; i++)
2024-10-11T23:29:08,247         |                 ^~
2024-10-11T23:29:08,248   src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpshift’:
2024-10-11T23:29:08,249   src/ViennaRNA/landscape/neighbor.c:1916:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:08,249    1916 |   for (i = 1; i <= vc->length; i++)
2024-10-11T23:29:08,249         |                 ^~
2024-10-11T23:29:08,250   src/ViennaRNA/landscape/neighbor.c:1928:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:08,250    1928 |         if (j < vc->length) {
2024-10-11T23:29:08,250         |               ^
2024-10-11T23:29:08,251   src/ViennaRNA/landscape/neighbor.c:1930:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:08,251    1930 |           if (k >= 1 && k < vc->length && k != i - 1 && pt_tmp[k + 1] == 0 &&
2024-10-11T23:29:08,251         |                           ^
2024-10-11T23:29:09,984   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/walk.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/walk.o -fopenmp
2024-10-11T23:29:10,139   src/ViennaRNA/landscape/walk.c:141:1: warning: ‘isShift’ defined but not used [-Wunused-function]
2024-10-11T23:29:10,139     141 | isShift(vrna_move_t *m)
2024-10-11T23:29:10,139         | ^~~~~~~
2024-10-11T23:29:10,139   In file included from src/ViennaRNA/landscape/walk.c:25:
2024-10-11T23:29:10,139   src/ViennaRNA/landscape/local_neighbors.inc:70:1: warning: ‘free_incremental_movelist’ defined but not used [-Wunused-function]
2024-10-11T23:29:10,140      70 | free_incremental_movelist(struct movelist *m)
2024-10-11T23:29:10,140         | ^~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:29:10,140   src/ViennaRNA/landscape/local_neighbors.inc:52:1: warning: ‘init_incremental_movelist’ defined but not used [-Wunused-function]
2024-10-11T23:29:10,140      52 | init_incremental_movelist(unsigned int n)
2024-10-11T23:29:10,140         | ^~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:29:10,140   src/ViennaRNA/landscape/local_neighbors.inc:17:1: warning: ‘add_to_incremental_move_list’ defined but not used [-Wunused-function]
2024-10-11T23:29:10,141      17 | add_to_incremental_move_list(vrna_fold_compound_t *fc,
2024-10-11T23:29:10,141         | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:29:10,526   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/mfe/Lfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe/Lfold.o -fopenmp
2024-10-11T23:29:10,748   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/mfe/alifold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe/alifold.o -fopenmp
2024-10-11T23:29:11,121   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/mfe/cofold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe/cofold.o -fopenmp
2024-10-11T23:29:11,494   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/mfe/fold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe/fold.o -fopenmp
2024-10-11T23:29:12,146   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/mfe/mfe.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe/mfe.o -fopenmp
2024-10-11T23:29:12,405   src/ViennaRNA/mfe/mfe.c: In function ‘fill_arrays’:
2024-10-11T23:29:12,405   src/ViennaRNA/mfe/mfe.c:428:35: warning: variable ‘uniq_ML’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:29:12,406     428 |   unsigned int      i, j, length, uniq_ML;
2024-10-11T23:29:12,406         |                                   ^~~~~~~
2024-10-11T23:29:23,421   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/mfe/mfe_exterior.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe/mfe_exterior.o -fopenmp
2024-10-11T23:29:25,987   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/mfe/mfe_exterior_window.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe/mfe_exterior_window.o -fopenmp
2024-10-11T23:29:28,401   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/mfe/mfe_gquad.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe/mfe_gquad.o -fopenmp
2024-10-11T23:29:29,826   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/mfe/mfe_internal.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe/mfe_internal.o -fopenmp
2024-10-11T23:29:33,127   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/mfe/mfe_multibranch.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe/mfe_multibranch.o -fopenmp
2024-10-11T23:29:37,143   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/mfe/mfe_window.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe/mfe_window.o -fopenmp
2024-10-11T23:29:37,380   src/ViennaRNA/mfe/mfe_window.c: In function ‘print_block_list’:
2024-10-11T23:29:37,382   src/ViennaRNA/mfe/mfe_window.c:1636:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2024-10-11T23:29:37,382    1636 |     printf("block %lu: en=%d, start: %lu, end: %lu, shift: %lu\n",
2024-10-11T23:29:37,382         |                   ~~^
2024-10-11T23:29:37,382         |                     |
2024-10-11T23:29:37,382         |                     long unsigned int
2024-10-11T23:29:37,382         |                   %u
2024-10-11T23:29:37,383    1637 |            cnt,
2024-10-11T23:29:37,383         |            ~~~
2024-10-11T23:29:37,383         |            |
2024-10-11T23:29:37,383         |            size_t {aka unsigned int}
2024-10-11T23:29:37,384   src/ViennaRNA/mfe/mfe_window.c:1642:13: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2024-10-11T23:29:37,384    1642 |   printf("%lu blocks remaining\n", cnt);
2024-10-11T23:29:37,385         |           ~~^                      ~~~
2024-10-11T23:29:37,385         |             |                      |
2024-10-11T23:29:37,385         |             long unsigned int      size_t {aka unsigned int}
2024-10-11T23:29:37,385         |           %u
2024-10-11T23:29:38,945   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/mfe/mfe_window_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe/mfe_window_wrappers.o -fopenmp
2024-10-11T23:29:39,184   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/mfe/mfe_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe/mfe_wrappers.o -fopenmp
2024-10-11T23:29:39,427   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/mm.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mm.o -fopenmp
2024-10-11T23:29:39,611   src/ViennaRNA/mm.c: In function ‘maximumMatching2Constraint’:
2024-10-11T23:29:39,611   src/ViennaRNA/mm.c:187:58: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:29:39,612     187 |           if ((unsigned int)ptable[l] != j && ptable2[l] != j)
2024-10-11T23:29:39,612         |                                                          ^~
2024-10-11T23:29:40,177   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/model.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/model.o -fopenmp
2024-10-11T23:29:41,055   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/move_set.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/move_set.o -fopenmp
2024-10-11T23:29:42,776   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/params/convert.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/convert.o -fopenmp
2024-10-11T23:29:43,308   In file included from src/ViennaRNA/params/convert.c:28:
2024-10-11T23:29:43,308   src/ViennaRNA/params/1.8.4_epars.h:100:13: warning: ‘oldinternal_loop37_184’ defined but not used [-Wunused-variable]
2024-10-11T23:29:43,308     100 | PRIVATE int oldinternal_loop37_184[31] = {
2024-10-11T23:29:43,308         |             ^~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:29:43,309   src/ViennaRNA/params/1.8.4_epars.h:90:13: warning: ‘oldbulge37_184’ defined but not used [-Wunused-variable]
2024-10-11T23:29:43,309      90 | PRIVATE int oldbulge37_184[31] = {
2024-10-11T23:29:43,309         |             ^~~~~~~~~~~~~~
2024-10-11T23:29:43,309   src/ViennaRNA/params/1.8.4_epars.h:80:13: warning: ‘oldhairpin37_184’ defined but not used [-Wunused-variable]
2024-10-11T23:29:43,309      80 | PRIVATE int oldhairpin37_184[31] = { /* from ViennaRNA 1.3 */
2024-10-11T23:29:43,310         |             ^~~~~~~~~~~~~~~~
2024-10-11T23:29:43,310   src/ViennaRNA/params/1.8.4_epars.h:50:16: warning: ‘Tmeasure_184’ defined but not used [-Wunused-variable]
2024-10-11T23:29:43,310      50 | PRIVATE double Tmeasure_184 = 37 + K0;  /* temperature of param measurements */
2024-10-11T23:29:43,310         |                ^~~~~~~~~~~~
2024-10-11T23:29:44,053   In function ‘write_new_parameter_file’,
2024-10-11T23:29:44,054       inlined from ‘convert_parameter_file’ at src/ViennaRNA/params/convert.c:173:3:
2024-10-11T23:29:44,054   src/ViennaRNA/params/convert.c:1168:9: warning: ‘strncpy’ specified bound 6 equals destination size [-Wstringop-truncation]
2024-10-11T23:29:44,054    1168 |         strncpy(bla, Tetraloops_184 + c * 7, 6);
2024-10-11T23:29:44,054         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:29:44,055   src/ViennaRNA/params/convert.c:1147:9: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 240 [-Wstringop-truncation]
2024-10-11T23:29:44,056    1147 |         strncpy(bla, Triloops_184 + c * 6, 5);
2024-10-11T23:29:44,056         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:29:45,371   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/params/default.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/default.o -fopenmp
2024-10-11T23:29:46,035   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/params/io.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/io.o -fopenmp
2024-10-11T23:29:55,198   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/params/params.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/params.o -fopenmp
2024-10-11T23:29:57,907   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/params/ribosum.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/ribosum.o -fopenmp
2024-10-11T23:29:59,774   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/params/salt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/salt.o -fopenmp
2024-10-11T23:30:00,131   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/params/special_const.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/special_const.o -fopenmp
2024-10-11T23:30:00,217   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/partfunc/alipfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/partfunc/alipfold.o -fopenmp
2024-10-11T23:30:00,687   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/partfunc/part_func_co.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/partfunc/part_func_co.o -fopenmp
2024-10-11T23:30:01,154   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/partfunc/part_func_up.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/partfunc/part_func_up.o -fopenmp
2024-10-11T23:30:01,371   src/ViennaRNA/partfunc/part_func_up.c: In function ‘free_pu_contrib_struct’:
2024-10-11T23:30:01,372   src/ViennaRNA/partfunc/part_func_up.c:236:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:01,373     236 |     for (i = 0; i <= pu->length; i++) {
2024-10-11T23:30:01,373         |                   ^~
2024-10-11T23:30:01,373   src/ViennaRNA/partfunc/part_func_up.c: In function ‘pf_unstru’:
2024-10-11T23:30:01,374   src/ViennaRNA/partfunc/part_func_up.c:284:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:01,374     284 |   for (i = 0; i < size; i++)
2024-10-11T23:30:01,374         |                 ^
2024-10-11T23:30:03,407   src/ViennaRNA/partfunc/part_func_up.c: In function ‘pf_interact’:
2024-10-11T23:30:03,408   src/ViennaRNA/partfunc/part_func_up.c:943:69: warning: ‘p_c2_S’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:30:03,408     943 |             tt = qint_4[i][j][a][b] * p_c_S[add_i5][add_i3] * p_c2_S[j][b] * scalew * rev_d;
2024-10-11T23:30:03,408         |                                                                     ^
2024-10-11T23:30:04,439   src/ViennaRNA/partfunc/part_func_up.c: In function ‘Up_plot’:
2024-10-11T23:30:04,439   src/ViennaRNA/partfunc/part_func_up.c:1665:10: warning: ‘ret’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:30:04,440    1665 |   return ret;
2024-10-11T23:30:04,440         |          ^~~
2024-10-11T23:30:04,584   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/partfunc/partfunc.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/partfunc/partfunc.o -fopenmp
2024-10-11T23:30:10,254   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/partfunc/pf_exterior.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/partfunc/pf_exterior.o -fopenmp
2024-10-11T23:30:11,687   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/partfunc/pf_fold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/partfunc/pf_fold.o -fopenmp
2024-10-11T23:30:12,348   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/partfunc/pf_gquad.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/partfunc/pf_gquad.o -fopenmp
2024-10-11T23:30:12,532   src/ViennaRNA/partfunc/pf_gquad.c: In function ‘get_plist_gquad_from_pr_max’:
2024-10-11T23:30:12,532   src/ViennaRNA/partfunc/pf_gquad.c:640:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:12,532     640 |   for (i = gi; i < gj; i++) {
2024-10-11T23:30:12,533         |                  ^
2024-10-11T23:30:12,533   src/ViennaRNA/partfunc/pf_gquad.c:641:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:12,533     641 |     for (j = i; j <= gj; j++) {
2024-10-11T23:30:12,533         |                   ^~
2024-10-11T23:30:12,535   src/ViennaRNA/partfunc/pf_gquad.c: In function ‘vrna_plist_gquad_from_pr_max’:
2024-10-11T23:30:12,535   src/ViennaRNA/partfunc/pf_gquad.c:793:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:12,535     793 |   for (i = gi; i < gj; i++) {
2024-10-11T23:30:12,535         |                  ^
2024-10-11T23:30:12,535   src/ViennaRNA/partfunc/pf_gquad.c:794:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:12,535     794 |     for (j = i; j <= gj; j++) {
2024-10-11T23:30:12,536         |                   ^~
2024-10-11T23:30:13,743   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/partfunc/pf_internal.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/partfunc/pf_internal.o -fopenmp
2024-10-11T23:30:17,062   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/partfunc/pf_multibranch.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/partfunc/pf_multibranch.o -fopenmp
2024-10-11T23:30:18,883   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/partfunc/pf_multifold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/partfunc/pf_multifold.o -fopenmp
2024-10-11T23:30:19,307   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/partfunc/pf_window.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/partfunc/pf_window.o -fopenmp
2024-10-11T23:30:19,528   src/ViennaRNA/partfunc/pf_window.c: In function ‘compute_probs’:
2024-10-11T23:30:19,528   src/ViennaRNA/partfunc/pf_window.c:1170:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:19,528    1170 |         if (max_m > l + MAXLOOP - u1 + 1)
2024-10-11T23:30:19,528         |                   ^
2024-10-11T23:30:19,536   src/ViennaRNA/partfunc/pf_window.c: In function ‘compute_pU’:
2024-10-11T23:30:19,537   src/ViennaRNA/partfunc/pf_window.c:1622:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:19,537    1622 |         if ((hc->up_ml[k + 1] >= j3 - k - 1) && (i5 < k)) {
2024-10-11T23:30:19,537         |                               ^~
2024-10-11T23:30:19,538   src/ViennaRNA/partfunc/pf_window.c:1637:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:19,538    1637 |         if ((hc->up_ml[i5 + 1] >= k + ulength - i5) && (j3 - 1 > k + ulength)) {
2024-10-11T23:30:19,539         |                                ^~
2024-10-11T23:30:19,539   src/ViennaRNA/partfunc/pf_window.c:1653:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:19,540    1653 |         if ((hc->up_ml[k + 1] >= ulength) && (i5 < k) && (j3 - 1 > k + ulength)) {
2024-10-11T23:30:19,540         |                               ^~
2024-10-11T23:30:19,543   src/ViennaRNA/partfunc/pf_window.c:1738:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:19,543    1738 |       if (hc->up_ml[k + 1] >= len) {
2024-10-11T23:30:19,543         |                            ^~
2024-10-11T23:30:19,544   src/ViennaRNA/partfunc/pf_window.c:1745:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:19,544    1745 |       if (hc->up_ml[k + 1] >= len) {
2024-10-11T23:30:19,545         |                            ^~
2024-10-11T23:30:19,545   src/ViennaRNA/partfunc/pf_window.c:1756:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:19,545    1756 |       if (hc->up_ml[k + 1] >= len)
2024-10-11T23:30:19,545         |                            ^~
2024-10-11T23:30:19,546   src/ViennaRNA/partfunc/pf_window.c:1761:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:19,547    1761 |       if (hc->up_ml[k + 1] >= len)
2024-10-11T23:30:19,547         |                            ^~
2024-10-11T23:30:19,548   src/ViennaRNA/partfunc/pf_window.c:1772:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:19,548    1772 |     if (hc->up_ml[k + 1] >= len) {
2024-10-11T23:30:19,548         |                          ^~
2024-10-11T23:30:19,549   src/ViennaRNA/partfunc/pf_window.c:1790:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:19,550    1790 |     if (hc->up_ml[k + 1] >= len) {
2024-10-11T23:30:19,550         |                          ^~
2024-10-11T23:30:19,552   src/ViennaRNA/partfunc/pf_window.c:1836:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:19,553    1836 |         (hc->up_ext[k - winSize + 1] >= winSize))
2024-10-11T23:30:19,553         |                                      ^~
2024-10-11T23:30:19,554   src/ViennaRNA/partfunc/pf_window.c:1843:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:19,554    1843 |       (hc->up_ext[k - winSize + 1] >= winSize)) {
2024-10-11T23:30:19,554         |                                    ^~
2024-10-11T23:30:19,556   src/ViennaRNA/partfunc/pf_window.c:1865:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:19,556    1865 |       if (hc->up_ext[k - startu + 1] >= startu) {
2024-10-11T23:30:19,556         |                                      ^~
2024-10-11T23:30:19,557   src/ViennaRNA/partfunc/pf_window.c:1890:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:19,558    1890 |       if (hc->up_ext[k - startu + 1] >= startu) {
2024-10-11T23:30:19,558         |                                      ^~
2024-10-11T23:30:22,287   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/partfunc/pf_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/partfunc/pf_wrappers.o -fopenmp
2024-10-11T23:30:22,564   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/perturbation_fold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/perturbation_fold.o -fopenmp
2024-10-11T23:30:23,163   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/plex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plex.o -fopenmp
2024-10-11T23:30:23,369   src/ViennaRNA/plex.c: In function ‘duplexfold_XS’:
2024-10-11T23:30:23,370   src/ViennaRNA/plex.c:441:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:23,370     441 |   int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x;
2024-10-11T23:30:23,370         |                                         ^~~~~~~
2024-10-11T23:30:23,384   src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’:
2024-10-11T23:30:23,385   src/ViennaRNA/plex.c:784:11: warning: unused variable ‘jdiff’ [-Wunused-variable]
2024-10-11T23:30:23,385     784 |       int jdiff = j_pos + j - 11;
2024-10-11T23:30:23,385         |           ^~~~~
2024-10-11T23:30:23,388   src/ViennaRNA/plex.c:1035:7: warning: variable ‘endy’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:23,388    1035 |   int endy;
2024-10-11T23:30:23,388         |       ^~~~
2024-10-11T23:30:23,389   src/ViennaRNA/plex.c:1033:7: warning: variable ‘endx’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:23,389    1033 |   int endx;
2024-10-11T23:30:23,389         |       ^~~~
2024-10-11T23:30:23,390   src/ViennaRNA/plex.c:642:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:23,390     642 |   int       maxPenalty[4];
2024-10-11T23:30:23,390         |             ^~~~~~~~~~
2024-10-11T23:30:23,409   src/ViennaRNA/plex.c: In function ‘fbacktrack_XS’:
2024-10-11T23:30:23,409   src/ViennaRNA/plex.c:1132:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:23,410    1132 |   int       maxPenalty[4];
2024-10-11T23:30:23,410         |             ^~~~~~~~~~
2024-10-11T23:30:23,424   src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’:
2024-10-11T23:30:23,425   src/ViennaRNA/plex.c:1979:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:23,425    1979 |   int       maxPenalty[4];
2024-10-11T23:30:23,425         |             ^~~~~~~~~~
2024-10-11T23:30:23,440   src/ViennaRNA/plex.c: In function ‘duplexfold’:
2024-10-11T23:30:23,441   src/ViennaRNA/plex.c:2710:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:23,442    2710 |   int       i, j, l1, Emin = INF, i_min = 0, j_min = 0;
2024-10-11T23:30:23,442         |                   ^~
2024-10-11T23:30:23,460   src/ViennaRNA/plex.c: In function ‘fduplexfold’:
2024-10-11T23:30:23,462   src/ViennaRNA/plex.c:2913:39: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:23,462    2913 |   int       i, j, Emin, i_min, j_min, l1;
2024-10-11T23:30:23,462         |                                       ^~
2024-10-11T23:30:24,767   src/ViennaRNA/plex.c:3246:16: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:30:24,768    3246 |   j0  = MAX2(j - 1, 11);
2024-10-11T23:30:24,768         |                ^
2024-10-11T23:30:24,769   src/ViennaRNA/plex.c:2924:13: note: ‘max_pos_j’ was declared here
2024-10-11T23:30:24,770    2924 |   int       max_pos_j;
2024-10-11T23:30:24,770         |             ^~~~~~~~~
2024-10-11T23:30:24,771   src/ViennaRNA/plex.c:3258:20: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:30:24,772    3258 |   type    = pair[S1[i]][S2[j]];
2024-10-11T23:30:24,772         |                    ^
2024-10-11T23:30:24,773   src/ViennaRNA/plex.c:2923:13: note: ‘max_pos’ was declared here
2024-10-11T23:30:24,773    2923 |   int       max_pos;                                    /* get position of the best hit */
2024-10-11T23:30:24,774         |             ^~~~~~~
2024-10-11T23:30:27,402   src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’:
2024-10-11T23:30:27,403   src/ViennaRNA/plex.c:1048:6: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:30:27,403    1048 |   if (j_min > 11)
2024-10-11T23:30:27,403         |      ^
2024-10-11T23:30:27,404   src/ViennaRNA/plex.c:1159:20: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:30:27,404    1159 |   type    = pair[S1[i]][S2[j]];
2024-10-11T23:30:27,404         |                    ^
2024-10-11T23:30:27,405   src/ViennaRNA/plex.c:636:13: note: ‘max_pos’ was declared here
2024-10-11T23:30:27,405     636 |   int       max_pos;                  /* get position of the best hit */
2024-10-11T23:30:27,405         |             ^~~~~~~
2024-10-11T23:30:30,052   src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’:
2024-10-11T23:30:30,053   src/ViennaRNA/plex.c:2364:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:30:30,054    2364 |     position_j[i + delta] = min_j_colonne;
2024-10-11T23:30:30,054         |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2024-10-11T23:30:31,102   src/ViennaRNA/plex.c: In function ‘Lduplexfold’:
2024-10-11T23:30:31,104   src/ViennaRNA/plex.c:4170:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:30:31,104    4170 |     position_j[i + delta] = min_j_colonne;
2024-10-11T23:30:31,104         |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2024-10-11T23:30:32,112   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/plex_functions.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plex_functions.o -fopenmp
2024-10-11T23:30:32,317   src/ViennaRNA/plex_functions.c: In function ‘vrna_pk_plex’:
2024-10-11T23:30:32,318   src/ViennaRNA/plex_functions.c:276:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:32,318     276 |           for (i = hit_ptr->start_5; i <= hit_ptr->end_5; i++)
2024-10-11T23:30:32,319         |                                        ^~
2024-10-11T23:30:32,319   src/ViennaRNA/plex_functions.c:278:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:32,319     278 |           for (i = hit_ptr->start_3; i <= hit_ptr->end_3; i++)
2024-10-11T23:30:32,319         |                                        ^~
2024-10-11T23:30:32,319   src/ViennaRNA/plex_functions.c:310:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:32,319     310 |             for (i = hit_ptr->start_5 - 1; i < hit_ptr->end_5; i++)
2024-10-11T23:30:32,320         |                                              ^
2024-10-11T23:30:32,320   src/ViennaRNA/plex_functions.c:314:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:32,320     314 |             for (i = hit_ptr->start_3 - 1; i < hit_ptr->end_3; i++)
2024-10-11T23:30:32,320         |                                              ^
2024-10-11T23:30:32,321   src/ViennaRNA/plex_functions.c: In function ‘vrna_pk_plex_accessibility’:
2024-10-11T23:30:32,322   src/ViennaRNA/plex_functions.c:409:26: warning: unused variable ‘dpp’ [-Wunused-variable]
2024-10-11T23:30:32,322     409 |   plist                 *dpp = NULL;
2024-10-11T23:30:32,322         |                          ^~~
2024-10-11T23:30:32,322   src/ViennaRNA/plex_functions.c:408:32: warning: unused variable ‘kT’ [-Wunused-variable]
2024-10-11T23:30:32,322     408 |   double                **pup, kT;
2024-10-11T23:30:32,322         |                                ^~
2024-10-11T23:30:32,323   src/ViennaRNA/plex_functions.c:408:27: warning: unused variable ‘pup’ [-Wunused-variable]
2024-10-11T23:30:32,323     408 |   double                **pup, kT;
2024-10-11T23:30:32,323         |                           ^~~
2024-10-11T23:30:32,323   src/ViennaRNA/plex_functions.c:407:37: warning: variable ‘r’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:32,323     407 |   int                   **a = NULL, r;
2024-10-11T23:30:32,323         |                                     ^
2024-10-11T23:30:32,323   src/ViennaRNA/plex_functions.c:407:27: warning: unused variable ‘a’ [-Wunused-variable]
2024-10-11T23:30:32,324     407 |   int                   **a = NULL, r;
2024-10-11T23:30:32,324         |                           ^
2024-10-11T23:30:32,324   src/ViennaRNA/plex_functions.c: In function ‘duplexfold_XS’:
2024-10-11T23:30:32,324   src/ViennaRNA/plex_functions.c:595:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:32,324     595 |   if (n > turn + 1) {
2024-10-11T23:30:32,324         |         ^
2024-10-11T23:30:32,325   src/ViennaRNA/plex_functions.c:607:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:32,325     607 |       for (j = i + turn + 1; j <= n; j++) {
2024-10-11T23:30:32,325         |                                ^~
2024-10-11T23:30:32,325   src/ViennaRNA/plex_functions.c:623:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:32,325     623 |         for (l = i + turn + 1; l <= n; l++) {
2024-10-11T23:30:32,325         |                                  ^~
2024-10-11T23:30:32,327   src/ViennaRNA/plex_functions.c:672:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:32,327     672 |         for (j = i + turn + 1; j <= n; j++) {
2024-10-11T23:30:32,327         |                                  ^~
2024-10-11T23:30:32,328   In file included from src/ViennaRNA/plex_functions.c:25:
2024-10-11T23:30:32,328   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:30:32,328     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:30:32,328         |                              ^
2024-10-11T23:30:32,328   src/ViennaRNA/plex_functions.c:674:25: note: in expansion of macro ‘MIN2’
2024-10-11T23:30:32,328     674 |             j_pos_end = MIN2(n + 1, j + max_interaction_length);
2024-10-11T23:30:32,328         |                         ^~~~
2024-10-11T23:30:32,329   src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:30:32,329     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:30:32,329         |                                            ^~~
2024-10-11T23:30:32,329   src/ViennaRNA/plex_functions.c:674:25: note: in expansion of macro ‘MIN2’
2024-10-11T23:30:32,329     674 |             j_pos_end = MIN2(n + 1, j + max_interaction_length);
2024-10-11T23:30:32,329         |                         ^~~~
2024-10-11T23:30:32,330   src/ViennaRNA/plex_functions.c:683:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:32,330     683 |                 sl    = (l < n) ? S1[l + 1] : -1;
2024-10-11T23:30:32,330         |                            ^
2024-10-11T23:30:33,487   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.o -fopenmp
2024-10-11T23:30:33,641   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12,
2024-10-11T23:30:33,641                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13:
2024-10-11T23:30:33,641   src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’:
2024-10-11T23:30:33,642   src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:799:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:33,642     799 |   double alpha[3];
2024-10-11T23:30:33,642         |          ^~~~~
2024-10-11T23:30:33,687   In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:19:
2024-10-11T23:30:33,687   src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectLineArc’:
2024-10-11T23:30:33,687   src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:285:12: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,687     285 |   char    *fnName = "intersectLineArc";
2024-10-11T23:30:33,687         |            ^~~~~~
2024-10-11T23:30:33,688   src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectArcArc’:
2024-10-11T23:30:33,688   src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:341:12: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,688     341 |   char    *fnName = "intersectArcArc";
2024-10-11T23:30:33,688         |            ^~~~~~
2024-10-11T23:30:33,693   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:19,
2024-10-11T23:30:33,693                    from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21,
2024-10-11T23:30:33,694                    from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12,
2024-10-11T23:30:33,694                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20:
2024-10-11T23:30:33,694   src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc: In function ‘ClosestPtPointBulge’:
2024-10-11T23:30:33,694   src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:151:9: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,694     151 |   char *fnName = "CLOSEST ON BULGE";
2024-10-11T23:30:33,695         |         ^~~~~~
2024-10-11T23:30:33,703   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21,
2024-10-11T23:30:33,703                    from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12,
2024-10-11T23:30:33,704                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20:
2024-10-11T23:30:33,704   src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodesBoundingBoxes’:
2024-10-11T23:30:33,704   src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:142:16: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,704     142 |   const char  *fnName       = "intersectNodesBoundingBoxes";
2024-10-11T23:30:33,704         |                ^~~~~~
2024-10-11T23:30:33,705   src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodeNode’:
2024-10-11T23:30:33,705   src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:179:16: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,705     179 |   const char  *fnName = "intersectNodeNode";
2024-10-11T23:30:33,705         |                ^~~~~~
2024-10-11T23:30:33,710   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:23,
2024-10-11T23:30:33,711                    from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12,
2024-10-11T23:30:33,711                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20:
2024-10-11T23:30:33,711   src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc: In function ‘checkAndApplyConfigChanges’:
2024-10-11T23:30:33,711   src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:109:13: warning: unused variable ‘newRadius’ [-Wunused-variable]
2024-10-11T23:30:33,711     109 |     double  newRadius = cfg->radius;
2024-10-11T23:30:33,711         |             ^~~~~~~~~
2024-10-11T23:30:33,712   src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:104:13: warning: unused variable ‘oldRadius’ [-Wunused-variable]
2024-10-11T23:30:33,712     104 |     double  oldRadius = cfg->radius;
2024-10-11T23:30:33,712         |             ^~~~~~~~~
2024-10-11T23:30:33,712   src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:100:9: warning: unused variable ‘logTag’ [-Wunused-variable]
2024-10-11T23:30:33,712     100 |   char *logTag = intersectionTypeToString(it);
2024-10-11T23:30:33,712         |         ^~~~~~
2024-10-11T23:30:33,712   src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:61:12: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,713      61 |   char    *fnName = "checkAndApplyConfigChanges";
2024-10-11T23:30:33,713         |            ^~~~~~
2024-10-11T23:30:33,713   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12,
2024-10-11T23:30:33,713                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20:
2024-10-11T23:30:33,713   src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusLinearSearch’:
2024-10-11T23:30:33,713   src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:84:18: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,714      84 |   char          *fnName = "shrinkLoopRadiusLinearSearch";
2024-10-11T23:30:33,714         |                  ^~~~~~
2024-10-11T23:30:33,714   src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusBinarySearch’:
2024-10-11T23:30:33,714   src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:162:18: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,714     162 |   char          *fnName = "shrinkLoopRadiusBinarySearch";
2024-10-11T23:30:33,714         |                  ^~~~~~
2024-10-11T23:30:33,720   src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeNode’:
2024-10-11T23:30:33,720   src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:694:9: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,720     694 |   char *fnName = "optimizeNode";
2024-10-11T23:30:33,720         |         ^~~~~~
2024-10-11T23:30:33,721   src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTreeRecursive’:
2024-10-11T23:30:33,721   src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:889:12: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,722     889 |   char    *fnName         = "optimizeTreeRecursive";
2024-10-11T23:30:33,722         |            ^~~~~~
2024-10-11T23:30:33,722   src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTree’:
2024-10-11T23:30:33,723   src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:943:9: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,723     943 |   char *fnName = "optimizeTree";
2024-10-11T23:30:33,723         |         ^~~~~~
2024-10-11T23:30:33,724   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:22,
2024-10-11T23:30:33,724                    from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:14,
2024-10-11T23:30:33,725                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20:
2024-10-11T23:30:33,725   src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasEquidistantIncrease’:
2024-10-11T23:30:33,725   src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:53:12: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,725      53 |   char    *fnName     = "CALC DELTAS EQUIDISTANT INCREASE";
2024-10-11T23:30:33,725         |            ^~~~~~
2024-10-11T23:30:33,726   src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasMaximumFirstDecrease’:
2024-10-11T23:30:33,726   src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:82:12: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,727      82 |   char    *fnName     = "CALC DELTAS MAXIMUM FIRST DECREASE";
2024-10-11T23:30:33,727         |            ^~~~~~
2024-10-11T23:30:33,728   src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasNearestNeighborsFirstDecrease’:
2024-10-11T23:30:33,728   src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:191:12: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,728     191 |   char    *fnName     = "CALC DELTAS NEAREST NEIGHBOR FIRST DECREASE";
2024-10-11T23:30:33,728         |            ^~~~~~
2024-10-11T23:30:33,731   src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltas’:
2024-10-11T23:30:33,731   src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:310:9: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,731     310 |   char *fnName = "CALC DELTAS";
2024-10-11T23:30:33,732         |         ^~~~~~
2024-10-11T23:30:33,732   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:14,
2024-10-11T23:30:33,732                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20:
2024-10-11T23:30:33,732   src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘fixIntersectionOfSiblings’:
2024-10-11T23:30:33,732   src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:76:18: warning: unused variable ‘rightNode’ [-Wunused-variable]
2024-10-11T23:30:33,732      76 |       treeNode  *rightNode  = getChild(tree, right);
2024-10-11T23:30:33,733         |                  ^~~~~~~~~
2024-10-11T23:30:33,733   src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:75:18: warning: unused variable ‘leftNode’ [-Wunused-variable]
2024-10-11T23:30:33,733      75 |       treeNode  *leftNode   = getChild(tree, left);
2024-10-11T23:30:33,733         |                  ^~~~~~~~
2024-10-11T23:30:33,733   src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘handleIntersectionOfSiblings’:
2024-10-11T23:30:33,733   src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:103:9: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,733     103 |   char *fnName = "FIX INTERSECTION OF SIBLINGS";
2024-10-11T23:30:33,734         |         ^~~~~~
2024-10-11T23:30:33,734   src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘checkSiblings’:
2024-10-11T23:30:33,734   src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:153:10: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,734     153 |   char  *fnName = "CHECK SIBLINGS";
2024-10-11T23:30:33,734         |          ^~~~~~
2024-10-11T23:30:33,742   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:23,
2024-10-11T23:30:33,743                    from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15,
2024-10-11T23:30:33,743                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20:
2024-10-11T23:30:33,743   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘pointToAngle’:
2024-10-11T23:30:33,743   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:31:12: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,743      31 |   char    *fnName = "POINT TO ANGLE";
2024-10-11T23:30:33,744         |            ^~~~~~
2024-10-11T23:30:33,745   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfRectangleAndCircle’:
2024-10-11T23:30:33,745   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:169:14: warning: unused variable ‘staticRectExt’ [-Wunused-variable]
2024-10-11T23:30:33,745     169 |       double staticRectExt[2] = {
2024-10-11T23:30:33,745         |              ^~~~~~~~~~~~~
2024-10-11T23:30:33,745   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:74:9: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,745      74 |   char *fnName = "fixIntersectionOfCircleAndRectangle";
2024-10-11T23:30:33,746         |         ^~~~~~
2024-10-11T23:30:33,747   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:23,
2024-10-11T23:30:33,747                    from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15,
2024-10-11T23:30:33,747                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20:
2024-10-11T23:30:33,747   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfCircles’:
2024-10-11T23:30:33,747   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:204:9: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,747     204 |   char *fnName = "fixIntersectionOfCircles";
2024-10-11T23:30:33,748         |         ^~~~~~
2024-10-11T23:30:33,748   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxL’:
2024-10-11T23:30:33,748   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:310:12: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,748     310 |   char    *fnName = "getRotationAngleLxL";
2024-10-11T23:30:33,748         |            ^~~~~~
2024-10-11T23:30:33,748   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxS’:
2024-10-11T23:30:33,748   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:349:12: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,749     349 |   char    *fnName = "getRotationAngleLxS";
2024-10-11T23:30:33,749         |            ^~~~~~
2024-10-11T23:30:33,749   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxL’:
2024-10-11T23:30:33,749   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:382:12: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,749     382 |   char    *fnName = "getRotationAngleSxL";
2024-10-11T23:30:33,749         |            ^~~~~~
2024-10-11T23:30:33,749   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxB’:
2024-10-11T23:30:33,749   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:434:11: warning: unused variable ‘intersect’ [-Wunused-variable]
2024-10-11T23:30:33,750     434 |   short   intersect         = intersectLoopBulges(staticLoop, mobileStem, &mobileBulgeIndex);
2024-10-11T23:30:33,750         |           ^~~~~~~~~
2024-10-11T23:30:33,750   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:413:12: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,750     413 |   char    *fnName = "getRotationAngleLxB";
2024-10-11T23:30:33,750         |            ^~~~~~
2024-10-11T23:30:33,750   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxL’:
2024-10-11T23:30:33,750   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:489:11: warning: unused variable ‘intersect’ [-Wunused-variable]
2024-10-11T23:30:33,750     489 |   short   intersect         = intersectLoopBulges(mobileLoop, staticStem, &staticBulgeIndex);
2024-10-11T23:30:33,751         |           ^~~~~~~~~
2024-10-11T23:30:33,751   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:477:12: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,751     477 |   char    *fnName = "getRotationAngleBxL";
2024-10-11T23:30:33,751         |            ^~~~~~
2024-10-11T23:30:33,751   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxS’:
2024-10-11T23:30:33,751   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:541:12: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,751     541 |   char    *fnName = "getRotationAngleSxS";
2024-10-11T23:30:33,752         |            ^~~~~~
2024-10-11T23:30:33,752   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxB’:
2024-10-11T23:30:33,752   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:567:11: warning: unused variable ‘intersect’ [-Wunused-variable]
2024-10-11T23:30:33,752     567 |   short   intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex);
2024-10-11T23:30:33,752         |           ^~~~~~~~~
2024-10-11T23:30:33,752   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:560:12: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,752     560 |   char    *fnName = "getRotationAngleSxB";
2024-10-11T23:30:33,752         |            ^~~~~~
2024-10-11T23:30:33,753   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxS’:
2024-10-11T23:30:33,753   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:612:11: warning: unused variable ‘intersect’ [-Wunused-variable]
2024-10-11T23:30:33,753     612 |   short   intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex);
2024-10-11T23:30:33,753         |           ^~~~~~~~~
2024-10-11T23:30:33,753   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:605:12: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,753     605 |   char    *fnName = "getRotationAngleBxS";
2024-10-11T23:30:33,753         |            ^~~~~~
2024-10-11T23:30:33,754   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxB’:
2024-10-11T23:30:33,754   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:660:11: warning: unused variable ‘intersect’ [-Wunused-variable]
2024-10-11T23:30:33,754     660 |   short   intersect         = intersectBulgesBulges(staticStem,
2024-10-11T23:30:33,754         |           ^~~~~~~~~
2024-10-11T23:30:33,754   src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:650:12: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,754     650 |   char    *fnName = "getRotationAngleBxB";
2024-10-11T23:30:33,755         |            ^~~~~~
2024-10-11T23:30:33,756   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15,
2024-10-11T23:30:33,756                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20:
2024-10-11T23:30:33,757   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_getRotationSign’:
2024-10-11T23:30:33,757   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘noIntersection’ not handled in switch [-Wswitch]
2024-10-11T23:30:33,757      64 |   switch (it) {
2024-10-11T23:30:33,757         |   ^~~~~~
2024-10-11T23:30:33,757   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxL’ not handled in switch [-Wswitch]
2024-10-11T23:30:33,757   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxS’ not handled in switch [-Wswitch]
2024-10-11T23:30:33,758   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxL’ not handled in switch [-Wswitch]
2024-10-11T23:30:33,758   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxS’ not handled in switch [-Wswitch]
2024-10-11T23:30:33,758   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxB’ not handled in switch [-Wswitch]
2024-10-11T23:30:33,758   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxS’ not handled in switch [-Wswitch]
2024-10-11T23:30:33,758   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxB’ not handled in switch [-Wswitch]
2024-10-11T23:30:33,758   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘siblings’ not handled in switch [-Wswitch]
2024-10-11T23:30:33,758   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘exterior’ not handled in switch [-Wswitch]
2024-10-11T23:30:33,759   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:44:10: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,759      44 |   char  *fnName = "getRotationSign";
2024-10-11T23:30:33,759         |          ^~~~~~
2024-10-11T23:30:33,759   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_getRotationSign’:
2024-10-11T23:30:33,759   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:105:10: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,759     105 |   char  *fnName = "getRotationSign";
2024-10-11T23:30:33,759         |          ^~~~~~
2024-10-11T23:30:33,760   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘getRotationSign’:
2024-10-11T23:30:33,760   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:145:10: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,760     145 |   char  *fnName = "getRotationSign";
2024-10-11T23:30:33,760         |          ^~~~~~
2024-10-11T23:30:33,760   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’:
2024-10-11T23:30:33,760   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:222:9: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,760     222 |   char *fnName = "fixIntersectionWithAncestor";
2024-10-11T23:30:33,761         |         ^~~~~~
2024-10-11T23:30:33,761   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘handleIntersectionWithAncestor’:
2024-10-11T23:30:33,761   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:366:22: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,762     366 |   char              *fnName = "handleIntersectionWithAncestor";
2024-10-11T23:30:33,762         |                      ^~~~~~
2024-10-11T23:30:33,763   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_setupExteriorBoundingBoxes’:
2024-10-11T23:30:33,763   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:498:15: warning: unused variable ‘stemSouthX’ [-Wunused-variable]
2024-10-11T23:30:33,763     498 |   double      stemSouthX  = loopX;
2024-10-11T23:30:33,763         |               ^~~~~~~~~~
2024-10-11T23:30:33,763   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:497:15: warning: unused variable ‘stemNorthX’ [-Wunused-variable]
2024-10-11T23:30:33,763     497 |   double      stemNorthX  = loopX;
2024-10-11T23:30:33,764         |               ^~~~~~~~~~
2024-10-11T23:30:33,764   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:482:16: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,764     482 |   char        *fnName = "setupExteriorBoundingBoxes";
2024-10-11T23:30:33,764         |                ^~~~~~
2024-10-11T23:30:33,765   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_setupExteriorBoundingBoxes’:
2024-10-11T23:30:33,765   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:625:22: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,765     625 |   char              *fnName = "setupExteriorBoundingBoxes";
2024-10-11T23:30:33,765         |                      ^~~~~~
2024-10-11T23:30:33,766   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE_setupExteriorBoundingBoxes’:
2024-10-11T23:30:33,767   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:715:21: warning: unused variable ‘it’ [-Wunused-variable]
2024-10-11T23:30:33,767     715 |   intersectionType  it                = noIntersection;
2024-10-11T23:30:33,767         |                     ^~
2024-10-11T23:30:33,767   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:695:22: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,767     695 |   char              *fnName = "setupExteriorBoundingBoxes";
2024-10-11T23:30:33,767         |                      ^~~~~~
2024-10-11T23:30:33,770   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘setupExteriorBoundingBoxes’:
2024-10-11T23:30:33,770   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:759:14: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,770     759 |   char      *fnName = "setupExteriorBoundingBoxes";
2024-10-11T23:30:33,770         |              ^~~~~~
2024-10-11T23:30:33,771   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘checkNodeAgainstAncestors’:
2024-10-11T23:30:33,771   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:950:14: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,771     950 |   char      *fnName = "checkNodeAgainstAncestors";
2024-10-11T23:30:33,771         |              ^~~~~~
2024-10-11T23:30:33,772   In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20:
2024-10-11T23:30:33,773   src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc: In function ‘checkAndFixIntersections’:
2024-10-11T23:30:33,773   src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:29:9: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,773      29 |   char *fnName = "checkAndFixIntersections";
2024-10-11T23:30:33,773         |         ^~~~~~
2024-10-11T23:30:33,785   src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘checkRemainingIntersections’:
2024-10-11T23:30:33,785   src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:75:16: warning: unused variable ‘fnName’ [-Wunused-variable]
2024-10-11T23:30:33,786      75 |   char        *fnName       = "checkRemainingIntersections";
2024-10-11T23:30:33,786         |                ^~~~~~
2024-10-11T23:30:33,790   src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘vrna_plot_coords_puzzler_pt’:
2024-10-11T23:30:33,790   src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:505:13: warning: unused variable ‘intersect’ [-Wunused-variable]
2024-10-11T23:30:33,791     505 |       short intersect     = checkRemainingIntersections(myX,
2024-10-11T23:30:33,791         |             ^~~~~~~~~
2024-10-11T23:30:33,792   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13,
2024-10-11T23:30:33,792                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13:
2024-10-11T23:30:33,793   src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: At top level:
2024-10-11T23:30:33,793   src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function]
2024-10-11T23:30:33,793     126 | intToMotiv(const int _int);
2024-10-11T23:30:33,793         | ^~~~~~~~~~
2024-10-11T23:30:33,794   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:16,
2024-10-11T23:30:33,794                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18:
2024-10-11T23:30:33,794   src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:135:1: warning: ‘printLBox’ declared ‘static’ but never defined [-Wunused-function]
2024-10-11T23:30:33,794     135 | printLBox(const loopBox *loop);
2024-10-11T23:30:33,794         | ^~~~~~~~~
2024-10-11T23:30:33,794   src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:139:1: warning: ‘printSBox’ declared ‘static’ but never defined [-Wunused-function]
2024-10-11T23:30:33,795     139 | printSBox(const stemBox *stem);
2024-10-11T23:30:33,795         | ^~~~~~~~~
2024-10-11T23:30:33,795   In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18:
2024-10-11T23:30:33,795   src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:224:1: warning: ‘printTree’ declared ‘static’ but never defined [-Wunused-function]
2024-10-11T23:30:33,795     224 | printTree(const treeNode  *node,
2024-10-11T23:30:33,795         | ^~~~~~~~~
2024-10-11T23:30:33,855   In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:21:
2024-10-11T23:30:33,855   src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:482:1: warning: ‘resolveExteriorChildIntersections’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,855     482 | resolveExteriorChildIntersections(treeNode                *exteriorNode,
2024-10-11T23:30:33,856         | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:30:33,856   src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:305:1: warning: ‘resolveExteriorChildrenIntersectionAffin’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,856     305 | resolveExteriorChildrenIntersectionAffin(treeNode                 *exteriorNode,
2024-10-11T23:30:33,856         | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:30:33,856   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15,
2024-10-11T23:30:33,856                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20:
2024-10-11T23:30:33,856   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:754:1: warning: ‘setupExteriorBoundingBoxes’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,856     754 | setupExteriorBoundingBoxes(treeNode                           *exterior,
2024-10-11T23:30:33,857         | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:30:33,857   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:690:1: warning: ‘TENTATIVE_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,857     690 | TENTATIVE_setupExteriorBoundingBoxes(treeNode                           *exterior,
2024-10-11T23:30:33,857         | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:30:33,857   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:620:1: warning: ‘TENTATIVE2_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,857     620 | TENTATIVE2_setupExteriorBoundingBoxes(treeNode                          *exterior,
2024-10-11T23:30:33,857         | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:30:33,857   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:142:1: warning: ‘getRotationSign’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,858     142 | getRotationSign(const treeNode **const  path,
2024-10-11T23:30:33,858         | ^~~~~~~~~~~~~~~
2024-10-11T23:30:33,858   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:40:1: warning: ‘TENTATIVE3_getRotationSign’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,858      40 | TENTATIVE3_getRotationSign(treeNode **const       path,
2024-10-11T23:30:33,858         | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:30:33,858   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21,
2024-10-11T23:30:33,858                    from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12,
2024-10-11T23:30:33,858                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20:
2024-10-11T23:30:33,859   src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:111:1: warning: ‘checkBounds’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,859     111 | checkBounds(const double  l1,
2024-10-11T23:30:33,859         | ^~~~~~~~~~~
2024-10-11T23:30:33,859   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:19,
2024-10-11T23:30:33,859                    from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21,
2024-10-11T23:30:33,859                    from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12,
2024-10-11T23:30:33,859                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20:
2024-10-11T23:30:33,859   src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:471:1: warning: ‘TestLoopBulge’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,860     471 | TestLoopBulge(const double  c[2],
2024-10-11T23:30:33,860         | ^~~~~~~~~~~~~
2024-10-11T23:30:33,860   src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:207:1: warning: ‘ClosestPtPointTriangle’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,860     207 | ClosestPtPointTriangle(const double p[2],
2024-10-11T23:30:33,860         | ^~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:30:33,860   In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18:
2024-10-11T23:30:33,860   src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1056:1: warning: ‘getChildNode’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,861    1056 | getChildNode(treeNode   *tree,
2024-10-11T23:30:33,861         | ^~~~~~~~~~~~
2024-10-11T23:30:33,861   src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1038:1: warning: ‘getStemCenter’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,861    1038 | getStemCenter(const treeNode  *node,
2024-10-11T23:30:33,861         | ^~~~~~~~~~~~~
2024-10-11T23:30:33,861   src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:569:1: warning: ‘getExterior’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,861     569 | getExterior(treeNode *node)
2024-10-11T23:30:33,861         | ^~~~~~~~~~~
2024-10-11T23:30:33,862   src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:537:1: warning: ‘getPairedAngle’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,862     537 | getPairedAngle(const treeNode *node)
2024-10-11T23:30:33,862         | ^~~~~~~~~~~~~~
2024-10-11T23:30:33,862   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:16,
2024-10-11T23:30:33,862                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18:
2024-10-11T23:30:33,862   src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:235:1: warning: ‘rotateStemBox’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,862     235 | rotateStemBox(stemBox       *box,
2024-10-11T23:30:33,862         | ^~~~~~~~~~~~~
2024-10-11T23:30:33,862   src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:203:1: warning: ‘rotateLoopBox’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,863     203 | rotateLoopBox(loopBox       *box,
2024-10-11T23:30:33,863         | ^~~~~~~~~~~~~
2024-10-11T23:30:33,863   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13,
2024-10-11T23:30:33,863                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13:
2024-10-11T23:30:33,863   src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,863     243 | getArcAngleDegree(const config  *cfg,
2024-10-11T23:30:33,863         | ^~~~~~~~~~~~~~~~~
2024-10-11T23:30:33,863   src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,864     216 | cfgPrintConfig(config *cfg)
2024-10-11T23:30:33,864         | ^~~~~~~~~~~~~~
2024-10-11T23:30:33,864   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12,
2024-10-11T23:30:33,864                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13:
2024-10-11T23:30:33,864   src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:506:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,864     506 | normalizeAngle(const double angle,
2024-10-11T23:30:33,864         | ^~~~~~~~~~~~~~
2024-10-11T23:30:33,865   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14,
2024-10-11T23:30:33,865                    from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12,
2024-10-11T23:30:33,865                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13:
2024-10-11T23:30:33,865   src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function]
2024-10-11T23:30:33,866     116 | angleToDistance(const double  radius,
2024-10-11T23:30:33,866         | ^~~~~~~~~~~~~~~
2024-10-11T23:30:37,365   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15,
2024-10-11T23:30:37,365                    from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20:
2024-10-11T23:30:37,365   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’:
2024-10-11T23:30:37,365   src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:255:12: warning: ‘internalChildAngle’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:30:37,365     255 |     double diffToStraight = MATH_PI - internalChildAngle;
2024-10-11T23:30:37,366         |            ^~~~~~~~~~~~~~
2024-10-11T23:30:38,834   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/RNApuzzler/RNAturtle.o -fopenmp
2024-10-11T23:30:38,984   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12,
2024-10-11T23:30:38,984                    from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15:
2024-10-11T23:30:38,984   src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’:
2024-10-11T23:30:38,985   src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:799:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:38,985     799 |   double alpha[3];
2024-10-11T23:30:38,985         |          ^~~~~
2024-10-11T23:30:39,007   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13,
2024-10-11T23:30:39,008                    from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15:
2024-10-11T23:30:39,008   src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c: At top level:
2024-10-11T23:30:39,008   src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function]
2024-10-11T23:30:39,008     126 | intToMotiv(const int _int);
2024-10-11T23:30:39,009         | ^~~~~~~~~~
2024-10-11T23:30:39,021   src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:705:1: warning: ‘cfgIsValid’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,021     705 | cfgIsValid(config       *cfg,
2024-10-11T23:30:39,022         | ^~~~~~~~~~
2024-10-11T23:30:39,022   src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:648:1: warning: ‘cfgApplyChanges’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,022     648 | cfgApplyChanges(config                            *cfg,
2024-10-11T23:30:39,022         | ^~~~~~~~~~~~~~~
2024-10-11T23:30:39,022   src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,022     243 | getArcAngleDegree(const config  *cfg,
2024-10-11T23:30:39,022         | ^~~~~~~~~~~~~~~~~
2024-10-11T23:30:39,022   src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,023     216 | cfgPrintConfig(config *cfg)
2024-10-11T23:30:39,023         | ^~~~~~~~~~~~~~
2024-10-11T23:30:39,023   src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:207:1: warning: ‘cfgFreeConfig’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,023     207 | cfgFreeConfig(config *cfg)
2024-10-11T23:30:39,023         | ^~~~~~~~~~~~~
2024-10-11T23:30:39,023   src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:184:1: warning: ‘cfgCloneConfig’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,023     184 | cfgCloneConfig(const config *cfg)
2024-10-11T23:30:39,024         | ^~~~~~~~~~~~~~
2024-10-11T23:30:39,024   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12,
2024-10-11T23:30:39,024                    from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15:
2024-10-11T23:30:39,024   src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:764:1: warning: ‘normal’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,024     764 | normal(const double v[2],
2024-10-11T23:30:39,024         | ^~~~~~
2024-10-11T23:30:39,025   src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:723:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,025     723 | getCutPointsOfCircleAndLine(const double  *center,
2024-10-11T23:30:39,025         | ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:30:39,025   src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:608:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,025     608 | getCutPointsOfCircles(const double  *c1,
2024-10-11T23:30:39,025         | ^~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:30:39,025   src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:568:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,025     568 | translatePointByVector(const double *point,
2024-10-11T23:30:39,026         | ^~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:30:39,026   src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:555:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,026     555 | rotateVectorByAngle(const double  *vector,
2024-10-11T23:30:39,026         | ^~~~~~~~~~~~~~~~~~~
2024-10-11T23:30:39,026   src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:506:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,026     506 | normalizeAngle(const double angle,
2024-10-11T23:30:39,026         | ^~~~~~~~~~~~~~
2024-10-11T23:30:39,026   src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:490:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,027     490 | anglePtPtPt2D(const double  *p1,
2024-10-11T23:30:39,027         | ^~~~~~~~~~~~~
2024-10-11T23:30:39,027   src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:446:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,027     446 | isToTheRightPointVector(const double  *lineStart,
2024-10-11T23:30:39,027         | ^~~~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:30:39,027   src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:359:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,027     359 | vectorLength2DSquared(const double vector[2])
2024-10-11T23:30:39,027         | ^~~~~~~~~~~~~~~~~~~~~
2024-10-11T23:30:39,028   src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:342:1: warning: ‘toRad’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,028     342 | toRad(double angle)
2024-10-11T23:30:39,028         | ^~~~~
2024-10-11T23:30:39,028   In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14,
2024-10-11T23:30:39,028                    from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12,
2024-10-11T23:30:39,028                    from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15:
2024-10-11T23:30:39,028   src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,028     116 | angleToDistance(const double  radius,
2024-10-11T23:30:39,029         | ^~~~~~~~~~~~~~~
2024-10-11T23:30:39,029   src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,029     108 | distanceToAngle(const double  radius,
2024-10-11T23:30:39,029         | ^~~~~~~~~~~~~~~
2024-10-11T23:30:39,029   src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function]
2024-10-11T23:30:39,029      62 | bubblesort(const int            numValues,
2024-10-11T23:30:39,029         | ^~~~~~~~~~
2024-10-11T23:30:39,873   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/alignments.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/alignments.o -fopenmp
2024-10-11T23:30:40,136   src/ViennaRNA/plotting/alignments.c: In function ‘vrna_file_PS_aln_opt’:
2024-10-11T23:30:40,137   src/ViennaRNA/plotting/alignments.c:176:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:30:40,137     176 |   columnWidth = (options.columns == 0) ? length : options.columns;
2024-10-11T23:30:40,137         |                                          ^~~~~~
2024-10-11T23:30:40,138   src/ViennaRNA/plotting/alignments.c:300:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:40,138     300 |   for (i = options.start; i <= options.end; i++) {
2024-10-11T23:30:40,138         |                             ^~
2024-10-11T23:30:40,139   src/ViennaRNA/plotting/alignments.c:302:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:40,139     302 |     if ((j > i) && (j <= options.end)) {
2024-10-11T23:30:40,139         |                       ^~
2024-10-11T23:30:40,140   src/ViennaRNA/plotting/alignments.c:387:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:40,140     387 |       if (length - currPos < max_len)
2024-10-11T23:30:40,140         |                            ^
2024-10-11T23:30:40,141   src/ViennaRNA/plotting/alignments.c:394:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:30:40,141     394 |       for (j = 0; j < (currPos + strlen(tmpBuffer)); j++)
2024-10-11T23:30:40,141         |                     ^
2024-10-11T23:30:40,152   In file included from src/ViennaRNA/plotting/alignments.c:27:
2024-10-11T23:30:40,152   At top level:
2024-10-11T23:30:40,152   src/ViennaRNA/plotting/ps_helpers.inc:151:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function]
2024-10-11T23:30:40,152     151 | print_PS_coords(FILE          *fh,
2024-10-11T23:30:40,152         | ^~~~~~~~~~~~~~~
2024-10-11T23:30:40,153   src/ViennaRNA/plotting/ps_helpers.inc:131:1: warning: ‘print_PS_sequence’ defined but not used [-Wunused-function]
2024-10-11T23:30:40,153     131 | print_PS_sequence(FILE    *fh,
2024-10-11T23:30:40,153         | ^~~~~~~~~~~~~~~~~
2024-10-11T23:30:40,662   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/eps.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/eps.o -fopenmp
2024-10-11T23:30:40,937   src/ViennaRNA/plotting/eps.c: In function ‘rnaplot_EPS’:
2024-10-11T23:30:40,938   src/ViennaRNA/plotting/eps.c:266:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:40,938     266 |     for (i = 0; i < length; i++) {
2024-10-11T23:30:40,938         |                   ^
2024-10-11T23:30:40,938   src/ViennaRNA/plotting/eps.c:282:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:40,938     282 |     for (i = 0; i < length; i++)
2024-10-11T23:30:40,938         |                   ^
2024-10-11T23:30:40,939   src/ViennaRNA/plotting/eps.c:294:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:40,939     294 |   for (i = 1; i <= length; i++)
2024-10-11T23:30:40,939         |                 ^~
2024-10-11T23:30:40,939   src/ViennaRNA/plotting/eps.c:310:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:40,939     310 |     for (k = 0; k < Lg; k++) {
2024-10-11T23:30:40,939         |                   ^
2024-10-11T23:30:40,940   src/ViennaRNA/plotting/eps.c:210:18: warning: unused variable ‘Y’ [-Wunused-variable]
2024-10-11T23:30:40,940     210 |   float     *X, *Y;
2024-10-11T23:30:40,940         |                  ^
2024-10-11T23:30:40,940   src/ViennaRNA/plotting/eps.c:210:14: warning: unused variable ‘X’ [-Wunused-variable]
2024-10-11T23:30:40,940     210 |   float     *X, *Y;
2024-10-11T23:30:40,940         |              ^
2024-10-11T23:30:40,941   src/ViennaRNA/plotting/eps.c:206:31: warning: unused variable ‘ymax’ [-Wunused-variable]
2024-10-11T23:30:40,941     206 |   float     xmin, xmax, ymin, ymax;
2024-10-11T23:30:40,941         |                               ^~~~
2024-10-11T23:30:40,941   src/ViennaRNA/plotting/eps.c:206:25: warning: unused variable ‘ymin’ [-Wunused-variable]
2024-10-11T23:30:40,941     206 |   float     xmin, xmax, ymin, ymax;
2024-10-11T23:30:40,941         |                         ^~~~
2024-10-11T23:30:40,941   src/ViennaRNA/plotting/eps.c:206:19: warning: unused variable ‘xmax’ [-Wunused-variable]
2024-10-11T23:30:40,941     206 |   float     xmin, xmax, ymin, ymax;
2024-10-11T23:30:40,942         |                   ^~~~
2024-10-11T23:30:40,942   src/ViennaRNA/plotting/eps.c:206:13: warning: unused variable ‘xmin’ [-Wunused-variable]
2024-10-11T23:30:40,942     206 |   float     xmin, xmax, ymin, ymax;
2024-10-11T23:30:40,942         |             ^~~~
2024-10-11T23:30:40,948   src/ViennaRNA/plotting/eps.c: In function ‘PS_rna_plot_snoop_a’:
2024-10-11T23:30:40,948   src/ViennaRNA/plotting/eps.c:604:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:30:40,949     604 |   if (cut_point > 0 && cut_point <= strlen(string))
2024-10-11T23:30:40,949         |                                  ^~
2024-10-11T23:30:41,660   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/gml.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/gml.o -fopenmp
2024-10-11T23:30:41,842   src/ViennaRNA/plotting/gml.c: In function ‘rnaplot_gml’:
2024-10-11T23:30:41,842   src/ViennaRNA/plotting/gml.c:162:15: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:41,843     162 |     if (pt[i] > i)
2024-10-11T23:30:41,844         |               ^
2024-10-11T23:30:41,978   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/layouts.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/layouts.o -fopenmp
2024-10-11T23:30:42,196   src/ViennaRNA/plotting/layouts.c: In function ‘simple_xy_coordinates’:
2024-10-11T23:30:42,197   src/ViennaRNA/plotting/layouts.c:557:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:42,197     557 |     int   ret, n;
2024-10-11T23:30:42,197         |           ^~~
2024-10-11T23:30:42,198   src/ViennaRNA/plotting/layouts.c: In function ‘simple_circplot_coordinates’:
2024-10-11T23:30:42,198   src/ViennaRNA/plotting/layouts.c:580:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:42,198     580 |     int   ret, n;
2024-10-11T23:30:42,198         |           ^~~
2024-10-11T23:30:42,629   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/naview/naview.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/naview/naview.o -fopenmp
2024-10-11T23:30:43,177   src/ViennaRNA/plotting/naview/naview.c: In function ‘construct_circle_segment’:
2024-10-11T23:30:43,177   src/ViennaRNA/plotting/naview/naview.c:1112:36: warning: ‘angleinc’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:30:43,177    1112 |       bases[i].x = nrx + rr*cos(a+j*angleinc);
2024-10-11T23:30:43,178         |                                   ~^~~~~~~~~
2024-10-11T23:30:43,178   src/ViennaRNA/plotting/naview/naview.c:1103:19: warning: ‘h’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:30:43,178    1103 |     nrx = midx + h*xn;
2024-10-11T23:30:43,178         |                  ~^~~
2024-10-11T23:30:43,463   src/ViennaRNA/plotting/naview/naview.c: In function ‘traverse_loop’:
2024-10-11T23:30:43,463   src/ViennaRNA/plotting/naview/naview.c:966:22: warning: ‘imindit’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:30:43,463     966 |       lp->connections[imindit]->extruded = true;
2024-10-11T23:30:43,463         |                      ^
2024-10-11T23:30:43,464   src/ViennaRNA/plotting/naview/naview.c:931:21: note: ‘imindit’ was declared here
2024-10-11T23:30:43,464     931 |   int i,j,end,start,imindit;
2024-10-11T23:30:43,464         |                     ^~~~~~~
2024-10-11T23:30:43,464   src/ViennaRNA/plotting/naview/naview.c:630:15: warning: ‘imaxloop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:30:43,464     630 |       icstart = imaxloop + 1;
2024-10-11T23:30:43,464         |       ~~~~~~~~^~~~~~~~~~~~~~
2024-10-11T23:30:44,171   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/plot_utils.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/plot_utils.o -fopenmp
2024-10-11T23:30:44,351   src/ViennaRNA/plotting/plot_utils.c: In function ‘vrna_annotate_covar_pairs’:
2024-10-11T23:30:44,351   src/ViennaRNA/plotting/plot_utils.c:280:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:44,351     280 |       for (s = 0; s < n_seq; s++) {
2024-10-11T23:30:44,351         |                     ^
2024-10-11T23:30:44,694   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/probabilities.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/probabilities.o -fopenmp
2024-10-11T23:30:44,959   src/ViennaRNA/plotting/probabilities.c: In function ‘vrna_plot_dp_EPS’:
2024-10-11T23:30:44,959   src/ViennaRNA/plotting/probabilities.c:311:62: warning: variable ‘linright_num’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:44,959     311 |                   linbottom_size, linleft_num, linleft_size, linright_num,
2024-10-11T23:30:44,959         |                                                              ^~~~~~~~~~~~
2024-10-11T23:30:44,959   src/ViennaRNA/plotting/probabilities.c:311:35: warning: variable ‘linleft_num’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:44,960     311 |                   linbottom_size, linleft_num, linleft_size, linright_num,
2024-10-11T23:30:44,960         |                                   ^~~~~~~~~~~
2024-10-11T23:30:44,960   src/ViennaRNA/plotting/probabilities.c:310:47: warning: variable ‘linbottom_num’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:44,960     310 |   int             i, lintop_num, lintop_size, linbottom_num,
2024-10-11T23:30:44,960         |                                               ^~~~~~~~~~~~~
2024-10-11T23:30:44,960   src/ViennaRNA/plotting/probabilities.c:310:22: warning: variable ‘lintop_num’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:44,960     310 |   int             i, lintop_num, lintop_size, linbottom_num,
2024-10-11T23:30:44,961         |                      ^~~~~~~~~~
2024-10-11T23:30:44,969   src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_accessibility’:
2024-10-11T23:30:44,969   src/ViennaRNA/plotting/probabilities.c:880:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:44,969     880 |   for(i = 0; i < length; i++){
2024-10-11T23:30:44,970         |                ^
2024-10-11T23:30:44,970   src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_ud_motif_prob’:
2024-10-11T23:30:44,970   src/ViennaRNA/plotting/probabilities.c:913:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:44,971     913 |   for(i = 0; i < actual_length; i++, actual_pos++){
2024-10-11T23:30:44,971         |                ^
2024-10-11T23:30:44,991   In file included from src/ViennaRNA/plotting/probabilities.c:28:
2024-10-11T23:30:44,991   At top level:
2024-10-11T23:30:44,991   src/ViennaRNA/plotting/ps_helpers.inc:151:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function]
2024-10-11T23:30:44,991     151 | print_PS_coords(FILE          *fh,
2024-10-11T23:30:44,991         | ^~~~~~~~~~~~~~~
2024-10-11T23:30:46,104   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/ssv.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/ssv.o -fopenmp
2024-10-11T23:30:46,287   src/ViennaRNA/plotting/ssv.c: In function ‘rnaplot_ssv’:
2024-10-11T23:30:46,287   src/ViennaRNA/plotting/ssv.c:188:15: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:46,287     188 |     if (pt[i] > i)
2024-10-11T23:30:46,288         |               ^
2024-10-11T23:30:46,288   src/ViennaRNA/plotting/ssv.c:112:35: warning: variable ‘ymax’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:46,288     112 |   float         xmin, xmax, ymin, ymax;
2024-10-11T23:30:46,288         |                                   ^~~~
2024-10-11T23:30:46,289   src/ViennaRNA/plotting/ssv.c:112:23: warning: variable ‘xmax’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:46,289     112 |   float         xmin, xmax, ymin, ymax;
2024-10-11T23:30:46,289         |                       ^~~~
2024-10-11T23:30:46,436   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/structures.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/structures.o -fopenmp
2024-10-11T23:30:46,618   src/ViennaRNA/plotting/structures.c: In function ‘vrna_plot_structure’:
2024-10-11T23:30:46,619   src/ViennaRNA/plotting/structures.c:68:7: warning: unused variable ‘no_aux_data’ [-Wunused-variable]
2024-10-11T23:30:46,619      68 |   int no_aux_data     = 0;
2024-10-11T23:30:46,620         |       ^~~~~~~~~~~
2024-10-11T23:30:46,683   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/svg.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/svg.o -fopenmp
2024-10-11T23:30:46,873   src/ViennaRNA/plotting/svg.c: In function ‘rnaplot_SVG’:
2024-10-11T23:30:46,874   src/ViennaRNA/plotting/svg.c:231:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘short int’ [-Wsign-compare]
2024-10-11T23:30:46,874     231 |           if (i + 1 < pt[i + 1]) {
2024-10-11T23:30:46,874         |                     ^
2024-10-11T23:30:46,875   src/ViennaRNA/plotting/svg.c:294:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:46,875     294 |         for (int j = 0; j < n - 1; j++) {
2024-10-11T23:30:46,875         |                           ^
2024-10-11T23:30:46,876   src/ViennaRNA/plotting/svg.c: In function ‘print_SVG_footer_data’:
2024-10-11T23:30:46,876   src/ViennaRNA/plotting/svg.c:387:15: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:46,876     387 |     if (pt[i] > i) {
2024-10-11T23:30:46,877         |               ^
2024-10-11T23:30:46,877   src/ViennaRNA/plotting/svg.c:394:15: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:30:46,877     394 |     if (pt[i] > i)
2024-10-11T23:30:46,877         |               ^
2024-10-11T23:30:46,885   At top level:
2024-10-11T23:30:46,885   src/ViennaRNA/plotting/svg.c:356:1: warning: ‘print_SVG_footer’ defined but not used [-Wunused-function]
2024-10-11T23:30:46,886     356 | print_SVG_footer(FILE *fh)
2024-10-11T23:30:46,886         | ^~~~~~~~~~~~~~~~
2024-10-11T23:30:47,267   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/xrna.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/xrna.o -fopenmp
2024-10-11T23:30:47,554   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/probabilities/equilibrium_probs.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/probabilities/equilibrium_probs.o -fopenmp
2024-10-11T23:30:47,899   src/ViennaRNA/probabilities/equilibrium_probs.c: In function ‘multistrand_contrib’:
2024-10-11T23:30:47,901   src/ViennaRNA/probabilities/equilibrium_probs.c:2364:27: warning: variable ‘sc_split’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:30:47,902    2364 |   sc_ext_exp_split        sc_split;
2024-10-11T23:30:47,902         |                           ^~~~~~~~
2024-10-11T23:30:58,524   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/probabilities/probs_structures.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/probabilities/probs_structures.o -fopenmp
2024-10-11T23:30:59,009   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/probing/SHAPE.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/probing/SHAPE.o -fopenmp
2024-10-11T23:30:59,430   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/probing/probing.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/probing/probing.o -fopenmp
2024-10-11T23:31:00,834   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/sampling/boltzmann_sampling.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/sampling/boltzmann_sampling.o -fopenmp
2024-10-11T23:31:01,062   In file included from src/ViennaRNA/sampling/boltzmann_sampling.c:37:
2024-10-11T23:31:01,062   src/ViennaRNA/sampling/data_structures_nonred.inc: In function ‘free_all_nrll’:
2024-10-11T23:31:01,063   src/ViennaRNA/sampling/data_structures_nonred.inc:1159:7: warning: unused variable ‘i’ [-Wunused-variable]
2024-10-11T23:31:01,063    1159 |   int i;
2024-10-11T23:31:01,063         |       ^
2024-10-11T23:31:06,283   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/sampling/bs_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/sampling/bs_wrappers.o -fopenmp
2024-10-11T23:31:06,663   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/search/BoyerMoore.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/search/BoyerMoore.o -fopenmp
2024-10-11T23:31:07,017   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/sequences/alphabet.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/sequences/alphabet.o -fopenmp
2024-10-11T23:31:07,674   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/sequences/msa.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/sequences/msa.o -fopenmp
2024-10-11T23:31:07,865   src/ViennaRNA/sequences/msa.c: In function ‘vrna_pscore’:
2024-10-11T23:31:07,865   src/ViennaRNA/sequences/msa.c:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:31:07,866     222 |     if ((u + 2) <= max_span) {
2024-10-11T23:31:07,866         |                 ^~
2024-10-11T23:31:07,871   src/ViennaRNA/sequences/msa.c: In function ‘vrna_aln_conservation_struct’:
2024-10-11T23:31:07,871   src/ViennaRNA/sequences/msa.c:554:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘short int’ [-Wsign-compare]
2024-10-11T23:31:07,871     554 |         if (i < pt[i]) {
2024-10-11T23:31:07,872         |               ^
2024-10-11T23:31:07,878   src/ViennaRNA/sequences/msa.c: In function ‘read_clustal’:
2024-10-11T23:31:07,878   src/ViennaRNA/sequences/msa.c:896:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:31:07,878     896 |     for (i = 0; i < strlen(seq); i++) {
2024-10-11T23:31:07,878         |                   ^
2024-10-11T23:31:07,880   src/ViennaRNA/sequences/msa.c:946:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-10-11T23:31:07,880     946 |     if (strlen(AlignedSeqs[nn]) != n) {
2024-10-11T23:31:07,880         |                                 ^~
2024-10-11T23:31:09,347   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/sequences/seq_utils.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/sequences/seq_utils.o -fopenmp
2024-10-11T23:31:09,576   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/sequences/sequence.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/sequences/sequence.o -fopenmp
2024-10-11T23:31:10,333   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/snofold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/snofold.o -fopenmp
2024-10-11T23:31:10,535   src/ViennaRNA/snofold.c: In function ‘snofold’:
2024-10-11T23:31:10,535   src/ViennaRNA/snofold.c:369:30: warning: variable ‘bonus_cnt’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:10,535     369 |   int length, energy, bonus, bonus_cnt, s;
2024-10-11T23:31:10,535         |                              ^~~~~~~~~
2024-10-11T23:31:10,535   src/ViennaRNA/snofold.c:369:23: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:10,536     369 |   int length, energy, bonus, bonus_cnt, s;
2024-10-11T23:31:10,536         |                       ^~~~~
2024-10-11T23:31:10,539   src/ViennaRNA/snofold.c: In function ‘alisnofold’:
2024-10-11T23:31:10,540   src/ViennaRNA/snofold.c:593:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-10-11T23:31:10,540     593 |     if (strlen(strings[s]) != length)
2024-10-11T23:31:10,540         |                            ^~
2024-10-11T23:31:10,544   src/ViennaRNA/snofold.c: In function ‘alifill_arrays’:
2024-10-11T23:31:10,545   src/ViennaRNA/snofold.c:625:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:10,545     625 |   int bonus, n_seq, s;
2024-10-11T23:31:10,545         |       ^~~~~
2024-10-11T23:31:10,548   src/ViennaRNA/snofold.c: In function ‘alibacktrack’:
2024-10-11T23:31:10,548   src/ViennaRNA/snofold.c:789:34: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:10,548     789 |     int ml, ss, cij, traced, i1, j1, p, q;
2024-10-11T23:31:10,548         |                                  ^~
2024-10-11T23:31:10,548   src/ViennaRNA/snofold.c:789:30: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:10,549     789 |     int ml, ss, cij, traced, i1, j1, p, q;
2024-10-11T23:31:10,549         |                              ^~
2024-10-11T23:31:10,549   src/ViennaRNA/snofold.c:776:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:10,549     776 |   int bonus, n_seq, *type;
2024-10-11T23:31:10,549         |       ^~~~~
2024-10-11T23:31:10,557   src/ViennaRNA/snofold.c: In function ‘backtrack’:
2024-10-11T23:31:10,558   src/ViennaRNA/snofold.c:1155:26: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:10,558    1155 |     int cij, traced, i1, j1, /*d3, d5, mm,*/ p, q;
2024-10-11T23:31:10,558         |                          ^~
2024-10-11T23:31:10,558   src/ViennaRNA/snofold.c:1155:22: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:10,558    1155 |     int cij, traced, i1, j1, /*d3, d5, mm,*/ p, q;
2024-10-11T23:31:10,559         |                      ^~
2024-10-11T23:31:10,559   src/ViennaRNA/snofold.c: In function ‘alisnobacktrack_fold_from_pair’:
2024-10-11T23:31:10,560   src/ViennaRNA/snofold.c:1313:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-10-11T23:31:10,560    1313 |     if (strlen(strings[s]) != length)
2024-10-11T23:31:10,560         |                            ^~
2024-10-11T23:31:10,587   At top level:
2024-10-11T23:31:10,587   src/ViennaRNA/snofold.c:159:15: warning: ‘alpha’ defined but not used [-Wunused-variable]
2024-10-11T23:31:10,587     159 | PRIVATE char  alpha[] = "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz";
2024-10-11T23:31:10,587         |               ^~~~~
2024-10-11T23:31:12,468   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/snoop.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/snoop.o -fopenmp
2024-10-11T23:31:12,676   src/ViennaRNA/snoop.c: In function ‘alisnoopfold’:
2024-10-11T23:31:12,677   src/ViennaRNA/snoop.c:253:22: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,677     253 |   int       i, j, E, l1, Emin = INF, i_min = 0, j_min = 0;
2024-10-11T23:31:12,677         |                      ^~
2024-10-11T23:31:12,685   src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack’:
2024-10-11T23:31:12,685   src/ViennaRNA/snoop.c:847:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,685     847 |           int     min_k, max_k;
2024-10-11T23:31:12,685         |                          ^~~~~
2024-10-11T23:31:12,685   src/ViennaRNA/snoop.c:847:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,685     847 |           int     min_k, max_k;
2024-10-11T23:31:12,686         |                   ^~~~~
2024-10-11T23:31:12,696   src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt’:
2024-10-11T23:31:12,696   src/ViennaRNA/snoop.c:1152:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,696    1152 |   int       Loop_E;
2024-10-11T23:31:12,696         |             ^~~~~~
2024-10-11T23:31:12,697   src/ViennaRNA/snoop.c:1150:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,697    1150 |   int       Loop_D;
2024-10-11T23:31:12,697         |             ^~~~~~
2024-10-11T23:31:12,697   src/ViennaRNA/snoop.c:1149:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,697    1149 |   int       Duplex_El, Duplex_Er;
2024-10-11T23:31:12,697         |                        ^~~~~~~~~
2024-10-11T23:31:12,698   src/ViennaRNA/snoop.c:1149:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,698    1149 |   int       Duplex_El, Duplex_Er;
2024-10-11T23:31:12,698         |             ^~~~~~~~~
2024-10-11T23:31:12,698   src/ViennaRNA/snoop.c:1123:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,698    1123 |   int max_pos;
2024-10-11T23:31:12,699         |       ^~~~~~~
2024-10-11T23:31:12,702   src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list’:
2024-10-11T23:31:12,702   src/ViennaRNA/snoop.c:1459:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,703    1459 |         int     min_k, max_k;
2024-10-11T23:31:12,703         |                        ^~~~~
2024-10-11T23:31:12,703   src/ViennaRNA/snoop.c:1459:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,703    1459 |         int     min_k, max_k;
2024-10-11T23:31:12,703         |                 ^~~~~
2024-10-11T23:31:12,708   src/ViennaRNA/snoop.c:1395:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,708    1395 |   int       Loop_E;
2024-10-11T23:31:12,708         |             ^~~~~~
2024-10-11T23:31:12,708   src/ViennaRNA/snoop.c:1393:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,708    1393 |   int       Loop_D;
2024-10-11T23:31:12,708         |             ^~~~~~
2024-10-11T23:31:12,709   src/ViennaRNA/snoop.c:1392:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,709    1392 |   int       Duplex_El, Duplex_Er;
2024-10-11T23:31:12,709         |                        ^~~~~~~~~
2024-10-11T23:31:12,709   src/ViennaRNA/snoop.c:1392:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,710    1392 |   int       Duplex_El, Duplex_Er;
2024-10-11T23:31:12,710         |             ^~~~~~~~~
2024-10-11T23:31:12,710   src/ViennaRNA/snoop.c:1366:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,710    1366 |   int max_pos;
2024-10-11T23:31:12,710         |       ^~~~~~~
2024-10-11T23:31:12,716   src/ViennaRNA/snoop.c: In function ‘snoopfold’:
2024-10-11T23:31:12,717   src/ViennaRNA/snoop.c:1851:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,717    1851 |         int     min_k, max_k;
2024-10-11T23:31:12,717         |                        ^~~~~
2024-10-11T23:31:12,718   src/ViennaRNA/snoop.c:1851:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,718    1851 |         int     min_k, max_k;
2024-10-11T23:31:12,718         |                 ^~~~~
2024-10-11T23:31:12,722   src/ViennaRNA/snoop.c:1790:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,722    1790 |   int       i, j, l1, Emin = INF, i_min = 0, j_min = 0;
2024-10-11T23:31:12,722         |                   ^~
2024-10-11T23:31:12,725   src/ViennaRNA/snoop.c: In function ‘snoopfold_XS_fill’:
2024-10-11T23:31:12,726   src/ViennaRNA/snoop.c:2055:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,726    2055 |         int     min_k, max_k;
2024-10-11T23:31:12,727         |                        ^~~~~
2024-10-11T23:31:12,727   src/ViennaRNA/snoop.c:2055:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,727    2055 |         int     min_k, max_k;
2024-10-11T23:31:12,728         |                 ^~~~~
2024-10-11T23:31:12,731   src/ViennaRNA/snoop.c:1992:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,731    1992 |   int       Loop_E;
2024-10-11T23:31:12,731         |             ^~~~~~
2024-10-11T23:31:12,732   src/ViennaRNA/snoop.c:1990:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,732    1990 |   int       Loop_D;
2024-10-11T23:31:12,732         |             ^~~~~~
2024-10-11T23:31:12,733   src/ViennaRNA/snoop.c:1989:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,733    1989 |   int       Duplex_El, Duplex_Er;
2024-10-11T23:31:12,733         |                        ^~~~~~~~~
2024-10-11T23:31:12,734   src/ViennaRNA/snoop.c:1989:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,734    1989 |   int       Duplex_El, Duplex_Er;
2024-10-11T23:31:12,734         |             ^~~~~~~~~
2024-10-11T23:31:12,735   src/ViennaRNA/snoop.c:1980:42: warning: variable ‘j_min’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,735    1980 |   int       i, j, Emin = INF, i_min = 0, j_min = 0;
2024-10-11T23:31:12,735         |                                          ^~~~~
2024-10-11T23:31:12,736   src/ViennaRNA/snoop.c:1980:31: warning: variable ‘i_min’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,736    1980 |   int       i, j, Emin = INF, i_min = 0, j_min = 0;
2024-10-11T23:31:12,736         |                               ^~~~~
2024-10-11T23:31:12,739   src/ViennaRNA/snoop.c: In function ‘snoop_subopt’:
2024-10-11T23:31:12,741   src/ViennaRNA/snoop.c:2142:25: warning: variable ‘E’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,741    2142 |   int     i, j, n1, n2, E, n_subopt = 0, n_max;
2024-10-11T23:31:12,741         |                         ^
2024-10-11T23:31:12,746   src/ViennaRNA/snoop.c: In function ‘snoop_subopt_XS’:
2024-10-11T23:31:12,747   src/ViennaRNA/snoop.c:2477:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,748    2477 |         int   begin_t, end_t, begin_q, end_q, and, pipe, k;
2024-10-11T23:31:12,748         |                                                    ^~~~
2024-10-11T23:31:12,749   src/ViennaRNA/snoop.c:2477:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,749    2477 |         int   begin_t, end_t, begin_q, end_q, and, pipe, k;
2024-10-11T23:31:12,749         |                                               ^~~
2024-10-11T23:31:12,750   src/ViennaRNA/snoop.c:2344:7: warning: variable ‘u’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,750    2344 |   int u;
2024-10-11T23:31:12,750         |       ^
2024-10-11T23:31:12,751   src/ViennaRNA/snoop.c:2338:7: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,752    2338 |   int Loop_D;
2024-10-11T23:31:12,752         |       ^~~~~~
2024-10-11T23:31:12,753   src/ViennaRNA/snoop.c:2337:29: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,753    2337 |   int Duplex_El, Duplex_Er, Loop_E;
2024-10-11T23:31:12,753         |                             ^~~~~~
2024-10-11T23:31:12,754   src/ViennaRNA/snoop.c:2337:18: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,754    2337 |   int Duplex_El, Duplex_Er, Loop_E;
2024-10-11T23:31:12,754         |                  ^~~~~~~~~
2024-10-11T23:31:12,755   src/ViennaRNA/snoop.c:2337:7: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,755    2337 |   int Duplex_El, Duplex_Er, Loop_E;
2024-10-11T23:31:12,755         |       ^~~~~~~~~
2024-10-11T23:31:12,756   src/ViennaRNA/snoop.c:2329:16: warning: variable ‘n_max’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,757    2329 |   int i, j, E, n_max;
2024-10-11T23:31:12,757         |                ^~~~~
2024-10-11T23:31:12,758   src/ViennaRNA/snoop.c:2329:13: warning: variable ‘E’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,758    2329 |   int i, j, E, n_max;
2024-10-11T23:31:12,758         |             ^
2024-10-11T23:31:12,762   src/ViennaRNA/snoop.c: In function ‘snoop_backtrack’:
2024-10-11T23:31:12,763   src/ViennaRNA/snoop.c:2628:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,763    2628 |           int     min_k, max_k;
2024-10-11T23:31:12,763         |                          ^~~~~
2024-10-11T23:31:12,764   src/ViennaRNA/snoop.c:2628:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,765    2628 |           int     min_k, max_k;
2024-10-11T23:31:12,765         |                   ^~~~~
2024-10-11T23:31:12,775   src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’:
2024-10-11T23:31:12,776   src/ViennaRNA/snoop.c:2954:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,776    2954 |         int     min_k, max_k;
2024-10-11T23:31:12,776         |                        ^~~~~
2024-10-11T23:31:12,778   src/ViennaRNA/snoop.c:2954:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,778    2954 |         int     min_k, max_k;
2024-10-11T23:31:12,778         |                 ^~~~~
2024-10-11T23:31:12,783   src/ViennaRNA/snoop.c:2882:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,783    2882 |   int       Loop_E;
2024-10-11T23:31:12,783         |             ^~~~~~
2024-10-11T23:31:12,784   src/ViennaRNA/snoop.c:2880:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,784    2880 |   int       Loop_D;
2024-10-11T23:31:12,785         |             ^~~~~~
2024-10-11T23:31:12,786   src/ViennaRNA/snoop.c:2879:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,786    2879 |   int       Duplex_El, Duplex_Er;
2024-10-11T23:31:12,786         |                        ^~~~~~~~~
2024-10-11T23:31:12,787   src/ViennaRNA/snoop.c:2879:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,787    2879 |   int       Duplex_El, Duplex_Er;
2024-10-11T23:31:12,788         |             ^~~~~~~~~
2024-10-11T23:31:12,789   src/ViennaRNA/snoop.c:2864:7: warning: variable ‘max_pos_j’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,789    2864 |   int max_pos_j = INF;
2024-10-11T23:31:12,789         |       ^~~~~~~~~
2024-10-11T23:31:12,790   src/ViennaRNA/snoop.c:2850:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,791    2850 |   int max_pos;
2024-10-11T23:31:12,791         |       ^~~~~~~
2024-10-11T23:31:12,795   src/ViennaRNA/snoop.c: In function ‘find_max_snoop_XS’:
2024-10-11T23:31:12,797   src/ViennaRNA/snoop.c:3202:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,797    3202 |         int   begin_t, end_t, begin_q, end_q, and, pipe, i;
2024-10-11T23:31:12,797         |                                                    ^~~~
2024-10-11T23:31:12,799   src/ViennaRNA/snoop.c:3202:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:12,799    3202 |         int   begin_t, end_t, begin_q, end_q, and, pipe, i;
2024-10-11T23:31:12,799         |                                               ^~~
2024-10-11T23:31:13,509   src/ViennaRNA/snoop.c: In function ‘snoop_backtrack.constprop’:
2024-10-11T23:31:13,510   src/ViennaRNA/snoop.c:2564:12: warning: ‘struc_loop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:31:13,510    2564 |   char    *struc_loop;
2024-10-11T23:31:13,510         |            ^~~~~~~~~~
2024-10-11T23:31:14,011   src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack.constprop’:
2024-10-11T23:31:14,011   src/ViennaRNA/snoop.c:747:10: warning: ‘struc_loop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:31:14,011     747 |   char  *struc_loop;
2024-10-11T23:31:14,011         |          ^~~~~~~~~~
2024-10-11T23:31:17,402   src/ViennaRNA/snoop.c: In function ‘snoopfold_XS’:
2024-10-11T23:31:17,404   src/ViennaRNA/snoop.c:3472:10: warning: ‘u’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:31:17,404    3472 |   return mfe;
2024-10-11T23:31:17,404         |          ^~~
2024-10-11T23:31:17,406   src/ViennaRNA/snoop.c:3505:12: warning: ‘struc_loop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:31:17,406    3505 |   char    *struc_loop;
2024-10-11T23:31:17,406         |            ^~~~~~~~~~
2024-10-11T23:31:18,403   src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’:
2024-10-11T23:31:18,404   src/ViennaRNA/snoop.c:3042:19: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-10-11T23:31:18,404    3042 |     position_j[i] = min_j_colonne;
2024-10-11T23:31:18,405         |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2024-10-11T23:31:19,131   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/stringdist.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/stringdist.o -fopenmp
2024-10-11T23:31:20,014   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/structures/centroid.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/structures/centroid.o -fopenmp
2024-10-11T23:31:20,408   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/structures/mea.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/structures/mea.o -fopenmp
2024-10-11T23:31:20,588   src/ViennaRNA/structures/mea.c: In function ‘compute_MEA’:
2024-10-11T23:31:20,589   src/ViennaRNA/structures/mea.c:252:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:20,589     252 |         if (pp->j > jmax_gq)
2024-10-11T23:31:20,589         |                   ^
2024-10-11T23:31:20,589   src/ViennaRNA/structures/mea.c:255:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:20,590     255 |         if (pp->i < gq_circ_imin[pp->j])
2024-10-11T23:31:20,590         |                   ^
2024-10-11T23:31:20,590   src/ViennaRNA/structures/mea.c:258:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:20,590     258 |         if (pp->i > gq_circ_imax[pp->j])
2024-10-11T23:31:20,590         |                   ^
2024-10-11T23:31:20,591   src/ViennaRNA/structures/mea.c:278:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:20,591     278 |     if ((pp->i == i) &&
2024-10-11T23:31:20,591         |                ^~
2024-10-11T23:31:20,594   src/ViennaRNA/structures/mea.c: In function ‘prune_plist’:
2024-10-11T23:31:20,595   src/ViennaRNA/structures/mea.c:457:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:31:20,595     457 |           for (i = pc->i; i <= pc->j; i++)
2024-10-11T23:31:20,595         |                             ^~
2024-10-11T23:31:20,595   src/ViennaRNA/structures/mea.c:462:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:31:20,596     462 |           for (i = 1; i <= pc->j; i++)
2024-10-11T23:31:20,596         |                         ^~
2024-10-11T23:31:20,596   src/ViennaRNA/structures/mea.c:485:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:31:20,597     485 |       for (i = pc->i; i <= pc->j; i++)
2024-10-11T23:31:20,597         |                         ^~
2024-10-11T23:31:20,597   src/ViennaRNA/structures/mea.c:496:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:20,598     496 |     if (pc->i > n) {
2024-10-11T23:31:20,598         |               ^
2024-10-11T23:31:20,598   src/ViennaRNA/structures/mea.c:508:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:31:20,599     508 |           for (i = pc->i; i <= pc->j; i++)
2024-10-11T23:31:20,599         |                             ^~
2024-10-11T23:31:20,599   src/ViennaRNA/structures/mea.c:514:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:31:20,600     514 |           for (i = 1; i <= pc->j; i++)
2024-10-11T23:31:20,600         |                         ^~
2024-10-11T23:31:21,260   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/structures/structure_benchmark.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/structures/structure_benchmark.o -fopenmp
2024-10-11T23:31:21,562   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/structures/structure_dotbracket.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/structures/structure_dotbracket.o -fopenmp
2024-10-11T23:31:21,738   src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_db_from_ptable’:
2024-10-11T23:31:21,739   src/ViennaRNA/structures/structure_dotbracket.c:193:21: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:21,739     193 |           if (pt[i] > i) {
2024-10-11T23:31:21,739         |                     ^
2024-10-11T23:31:21,739   src/ViennaRNA/structures/structure_dotbracket.c:196:24: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:21,739     196 |                 (pt[i] > stack[stack_cnt - 1])) {
2024-10-11T23:31:21,739         |                        ^
2024-10-11T23:31:21,742   src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_db_from_probs’:
2024-10-11T23:31:21,743   src/ViennaRNA/structures/structure_dotbracket.c:408:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:21,743     408 |     for (j = 1; j <= length; j++) {
2024-10-11T23:31:21,743         |                   ^~
2024-10-11T23:31:21,743   src/ViennaRNA/structures/structure_dotbracket.c:415:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:21,743     415 |       for (i = j + 1; i <= length; i++) {
2024-10-11T23:31:21,743         |                         ^~
2024-10-11T23:31:21,745   src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_letter_structure’:
2024-10-11T23:31:21,745   src/ViennaRNA/structures/structure_dotbracket.c:517:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:21,745     517 |     for (n = 0, k = 1; k <= bp[0].i; k++) {
2024-10-11T23:31:21,745         |                          ^~
2024-10-11T23:31:21,745   src/ViennaRNA/structures/structure_dotbracket.c:520:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:21,746     520 |       if ((x - 1 > 0) && (y + 1 <= length)) {
2024-10-11T23:31:21,746         |                                 ^~
2024-10-11T23:31:21,746   src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_db_from_bps’:
2024-10-11T23:31:21,747   src/ViennaRNA/structures/structure_dotbracket.c:547:23: warning: unused variable ‘tmp’ [-Wunused-variable]
2024-10-11T23:31:21,747     547 |   unsigned int  i, j, tmp;
2024-10-11T23:31:21,747         |                       ^~~
2024-10-11T23:31:21,747   src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_db_from_bp_stack’:
2024-10-11T23:31:21,747   src/ViennaRNA/structures/structure_dotbracket.c:614:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:21,747     614 |     for (k = 1; k <= bp[0].i; k++) {
2024-10-11T23:31:21,748         |                   ^~
2024-10-11T23:31:21,748   src/ViennaRNA/structures/structure_dotbracket.c:617:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:21,748     617 |       if (i > length)
2024-10-11T23:31:21,748         |             ^
2024-10-11T23:31:21,748   src/ViennaRNA/structures/structure_dotbracket.c:620:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:21,748     620 |       if (j > length)
2024-10-11T23:31:21,748         |             ^
2024-10-11T23:31:21,749   src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_db_from_plist’:
2024-10-11T23:31:21,749   src/ViennaRNA/structures/structure_dotbracket.c:658:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:21,749     658 |       if (((*ptr).i < n) && ((*ptr).j <= n)) {
2024-10-11T23:31:21,749         |                     ^
2024-10-11T23:31:21,749   src/ViennaRNA/structures/structure_dotbracket.c:658:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:21,750     658 |       if (((*ptr).i < n) && ((*ptr).j <= n)) {
2024-10-11T23:31:21,750         |                                       ^~
2024-10-11T23:31:21,753   src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_gq_parse’:
2024-10-11T23:31:21,754   src/ViennaRNA/structures/structure_dotbracket.c:706:53: warning: unused variable ‘stacks’ [-Wunused-variable]
2024-10-11T23:31:21,754     706 |   unsigned int i, n, end, start, stop, pre, tetrad, stacks, LL[4];
2024-10-11T23:31:21,754         |                                                     ^~~~~~
2024-10-11T23:31:22,710   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/structures/structure_helix.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/structures/structure_helix.o -fopenmp
2024-10-11T23:31:22,840   src/ViennaRNA/structures/structure_helix.c: In function ‘vrna_hx_merge’:
2024-10-11T23:31:22,840   src/ViennaRNA/structures/structure_helix.c:94:30: warning: unused variable ‘neighbors’ [-Wunused-variable]
2024-10-11T23:31:22,841      94 |   int       merged, i, j, s, neighbors, n;
2024-10-11T23:31:22,841         |                              ^~~~~~~~~
2024-10-11T23:31:23,089   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/structures/structure_metrics.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/structures/structure_metrics.o -fopenmp
2024-10-11T23:31:23,267   src/ViennaRNA/structures/structure_metrics.c: In function ‘vrna_dist_mountain’:
2024-10-11T23:31:23,267   src/ViennaRNA/structures/structure_metrics.c:122:18: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:23,267     122 |       if (pt1[i] > i)
2024-10-11T23:31:23,267         |                  ^
2024-10-11T23:31:23,267   src/ViennaRNA/structures/structure_metrics.c:134:18: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:23,268     134 |       if (pt2[i] > i)
2024-10-11T23:31:23,269         |                  ^
2024-10-11T23:31:23,401   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/structures/structure_pairtable.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/structures/structure_pairtable.o -fopenmp
2024-10-11T23:31:23,578   src/ViennaRNA/structures/structure_pairtable.c: In function ‘vrna_pt_pk_remove’:
2024-10-11T23:31:23,579   src/ViennaRNA/structures/structure_pairtable.c:153:21: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:23,579     153 |       if (ptable[i] > i) {
2024-10-11T23:31:23,579         |                     ^
2024-10-11T23:31:23,936   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/structures/structure_problist.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/structures/structure_problist.o -fopenmp
2024-10-11T23:31:24,122   src/ViennaRNA/structures/structure_problist.c: In function ‘wrap_plist’:
2024-10-11T23:31:24,122   src/ViennaRNA/structures/structure_problist.c:470:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-10-11T23:31:24,123     470 |         for (m = 0; m < domains_up->motif_count; m++) {
2024-10-11T23:31:24,123         |                       ^
2024-10-11T23:31:24,719   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/structures/structure_shapes.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/structures/structure_shapes.o -fopenmp
2024-10-11T23:31:24,844   src/ViennaRNA/structures/structure_shapes.c: In function ‘get_shrep’:
2024-10-11T23:31:24,844   src/ViennaRNA/structures/structure_shapes.c:251:11: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘short int’ [-Wsign-compare]
2024-10-11T23:31:24,844     251 |     if (i < pt[i]) {
2024-10-11T23:31:24,844         |           ^
2024-10-11T23:31:24,845   src/ViennaRNA/structures/structure_shapes.c:261:15: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:24,845     261 |     if (pt[i] > end) {
2024-10-11T23:31:24,845         |               ^
2024-10-11T23:31:24,845   src/ViennaRNA/structures/structure_shapes.c:268:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘short int’ [-Wsign-compare]
2024-10-11T23:31:24,845     268 |     if (start < pt[start]) {
2024-10-11T23:31:24,845         |               ^
2024-10-11T23:31:24,845   src/ViennaRNA/structures/structure_shapes.c:289:21: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:24,846     289 |           if (pt[k] != l) {
2024-10-11T23:31:24,846         |                     ^~
2024-10-11T23:31:25,344   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/structures/structure_tree.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/structures/structure_tree.o -fopenmp
2024-10-11T23:31:25,838   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/structures/structure_utils.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/structures/structure_utils.o -fopenmp
2024-10-11T23:31:26,150   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/subopt/subopt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/subopt/subopt.o -fopenmp
2024-10-11T23:31:26,468   src/ViennaRNA/subopt/subopt.c: In function ‘scan_m2’:
2024-10-11T23:31:26,468   src/ViennaRNA/subopt/subopt.c:1685:49: warning: variable ‘ij’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:26,468    1685 |   int                       fi, cij, ckj, e_gq, ij, kj, element_energy, best_energy,
2024-10-11T23:31:26,469         |                                                 ^~
2024-10-11T23:31:26,469   src/ViennaRNA/subopt/subopt.c:1685:33: warning: unused variable ‘cij’ [-Wunused-variable]
2024-10-11T23:31:26,469    1685 |   int                       fi, cij, ckj, e_gq, ij, kj, element_energy, best_energy,
2024-10-11T23:31:26,469         |                                 ^~~
2024-10-11T23:31:26,481   src/ViennaRNA/subopt/subopt.c: In function ‘scan_circular’:
2024-10-11T23:31:26,482   src/ViennaRNA/subopt/subopt.c:2132:40: warning: variable ‘fM2’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:26,482    2132 |                             FcI, FcM, *fM2, *fM2_real, *fM1_new, *indx, *rtype, kl, tmpE,
2024-10-11T23:31:26,482         |                                        ^~~
2024-10-11T23:31:26,483   src/ViennaRNA/subopt/subopt.c:2131:72: warning: variable ‘fM1’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:26,483    2131 |   int                       e, e_part, tmp_en, best_energy, *c, *fML, *fM1, Fc, FcH,
2024-10-11T23:31:26,483         |                                                                        ^~~
2024-10-11T23:31:26,484   src/ViennaRNA/subopt/subopt.c:2131:66: warning: variable ‘fML’ set but not used [-Wunused-but-set-variable]
2024-10-11T23:31:26,484    2131 |   int                       e, e_part, tmp_en, best_energy, *c, *fML, *fM1, Fc, FcH,
2024-10-11T23:31:26,484         |                                                                  ^~~
2024-10-11T23:31:35,457   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/subopt/subopt_gquad.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/subopt/subopt_gquad.o -fopenmp
2024-10-11T23:31:35,637   In file included from src/ViennaRNA/subopt/subopt_gquad.c:21:
2024-10-11T23:31:35,637   src/ViennaRNA/subopt/subopt_gquad.c: In function ‘vrna_gq_int_loop_subopt’:
2024-10-11T23:31:35,638   src/ViennaRNA/utils/basic.h:117:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:35,638     117 | #define MAX2(A, B)      ((A) > (B) ? (A) : (B))
2024-10-11T23:31:35,638         |                              ^
2024-10-11T23:31:35,638   src/ViennaRNA/subopt/subopt_gquad.c:108:17: note: in expansion of macro ‘MAX2’
2024-10-11T23:31:35,639     108 |         minq  = MAX2(c0, minq);
2024-10-11T23:31:35,639         |                 ^~~~
2024-10-11T23:31:35,639   src/ViennaRNA/utils/basic.h:117:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:31:35,639     117 | #define MAX2(A, B)      ((A) > (B) ? (A) : (B))
2024-10-11T23:31:35,639         |                                      ^~~
2024-10-11T23:31:35,639   src/ViennaRNA/subopt/subopt_gquad.c:108:17: note: in expansion of macro ‘MAX2’
2024-10-11T23:31:35,640     108 |         minq  = MAX2(c0, minq);
2024-10-11T23:31:35,640         |                 ^~~~
2024-10-11T23:31:35,640   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:35,640     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:31:35,640         |                              ^
2024-10-11T23:31:35,640   src/ViennaRNA/subopt/subopt_gquad.c:111:17: note: in expansion of macro ‘MIN2’
2024-10-11T23:31:35,640     111 |         maxq  = MIN2(c0, maxq);
2024-10-11T23:31:35,641         |                 ^~~~
2024-10-11T23:31:35,641   src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:31:35,641     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:31:35,641         |                                      ^~~
2024-10-11T23:31:35,641   src/ViennaRNA/subopt/subopt_gquad.c:111:17: note: in expansion of macro ‘MIN2’
2024-10-11T23:31:35,641     111 |         maxq  = MIN2(c0, maxq);
2024-10-11T23:31:35,641         |                 ^~~~
2024-10-11T23:31:35,642   src/ViennaRNA/utils/basic.h:117:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:35,642     117 | #define MAX2(A, B)      ((A) > (B) ? (A) : (B))
2024-10-11T23:31:35,642         |                              ^
2024-10-11T23:31:35,642   src/ViennaRNA/subopt/subopt_gquad.c:147:15: note: in expansion of macro ‘MAX2’
2024-10-11T23:31:35,642     147 |       minq  = MAX2(c0, minq);
2024-10-11T23:31:35,642         |               ^~~~
2024-10-11T23:31:35,642   src/ViennaRNA/utils/basic.h:117:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:31:35,643     117 | #define MAX2(A, B)      ((A) > (B) ? (A) : (B))
2024-10-11T23:31:35,643         |                                      ^~~
2024-10-11T23:31:35,643   src/ViennaRNA/subopt/subopt_gquad.c:147:15: note: in expansion of macro ‘MAX2’
2024-10-11T23:31:35,643     147 |       minq  = MAX2(c0, minq);
2024-10-11T23:31:35,643         |               ^~~~
2024-10-11T23:31:35,643   src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-10-11T23:31:35,643     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:31:35,644         |                              ^
2024-10-11T23:31:35,644   src/ViennaRNA/subopt/subopt_gquad.c:150:15: note: in expansion of macro ‘MIN2’
2024-10-11T23:31:35,644     150 |       maxq  = MIN2(c0, maxq);
2024-10-11T23:31:35,644         |               ^~~~
2024-10-11T23:31:35,644   src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-10-11T23:31:35,644     112 | #define MIN2(A, B)      ((A) < (B) ? (A) : (B))
2024-10-11T23:31:35,645         |                                      ^~~
2024-10-11T23:31:35,645   src/ViennaRNA/subopt/subopt_gquad.c:150:15: note: in expansion of macro ‘MIN2’
2024-10-11T23:31:35,645     150 |       maxq  = MIN2(c0, maxq);
2024-10-11T23:31:35,645         |               ^~~~
2024-10-11T23:31:36,061   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/subopt/subopt_zuker.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/subopt/subopt_zuker.o -fopenmp
2024-10-11T23:31:38,089   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/treedist.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/treedist.o -fopenmp
2024-10-11T23:31:38,226   src/ViennaRNA/treedist.c: In function ‘sprint_aligned_trees’:
2024-10-11T23:31:38,226   src/ViennaRNA/treedist.c:735:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:31:38,227     735 |         for (k = 0; k < strlen(ll); k++) {
2024-10-11T23:31:38,227         |                       ^
2024-10-11T23:31:38,227   src/ViennaRNA/treedist.c:756:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:31:38,227     756 |         for (k = 0; k < strlen(ll); k++) {
2024-10-11T23:31:38,228         |                       ^
2024-10-11T23:31:38,228   src/ViennaRNA/treedist.c:782:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:31:38,228     782 |         for (k = 0; k < strlen(ll) - strlen(ll1); k++)
2024-10-11T23:31:38,229         |                       ^
2024-10-11T23:31:38,229   src/ViennaRNA/treedist.c:786:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:31:38,229     786 |         for (k = 0; k < strlen(ll1) - strlen(ll); k++)
2024-10-11T23:31:38,229         |                       ^
2024-10-11T23:31:38,230   src/ViennaRNA/treedist.c:789:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:31:38,230     789 |       for (k = 0; k < strlen(ll); k++)
2024-10-11T23:31:38,230         |                     ^
2024-10-11T23:31:38,230   src/ViennaRNA/treedist.c:791:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-10-11T23:31:38,230     791 |       for (k = 0; k < strlen(ll); k++)
2024-10-11T23:31:38,230         |                     ^
2024-10-11T23:31:39,112   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/unstructured_domains.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/unstructured_domains.o -fopenmp
2024-10-11T23:31:41,577   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/utils/cpu.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils/cpu.o -fopenmp
2024-10-11T23:31:41,749   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/utils/higher_order_functions.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils/higher_order_functions.o -fopenmp
2024-10-11T23:31:42,001   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.0\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.9 -c src/ViennaRNA/utils/higher_order_functions_avx512.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils/higher_order_functions_avx512.o -fopenmp -mavx512f
2024-10-11T23:31:42,014   arm-linux-gnueabihf-gcc: error: unrecognized command-line option ‘-mavx512f’
2024-10-11T23:31:42,019   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2024-10-11T23:31:42,127   ERROR: Building wheel for viennarna (pyproject.toml) exited with 1
2024-10-11T23:31:42,145   [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmp9qw5fa73[/]
2024-10-11T23:31:42,145   [bold magenta]cwd[/]: /tmp/pip-wheel-3q5uo923/viennarna_a8fbc41e601a4f2a8f28d2e4b4acaa1a
2024-10-11T23:31:42,145   Building wheel for viennarna (pyproject.toml): finished with status 'error'
2024-10-11T23:31:42,147   ERROR: Failed building wheel for viennarna
2024-10-11T23:31:42,149 Failed to build viennarna
2024-10-11T23:31:42,150 ERROR: Failed to build one or more wheels
2024-10-11T23:31:42,151 Exception information:
2024-10-11T23:31:42,151 Traceback (most recent call last):
2024-10-11T23:31:42,151   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2024-10-11T23:31:42,151     status = _inner_run()
2024-10-11T23:31:42,151   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2024-10-11T23:31:42,151     return self.run(options, args)
2024-10-11T23:31:42,151   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 67, in wrapper
2024-10-11T23:31:42,151     return func(self, options, args)
2024-10-11T23:31:42,151   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2024-10-11T23:31:42,151     raise CommandError("Failed to build one or more wheels")
2024-10-11T23:31:42,151 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2024-10-11T23:31:42,155 Removed build tracker: '/tmp/pip-build-tracker-llen406n'