2024-11-02T16:46:57,443 Disabling truststore because Python version isn't 3.10+ 2024-11-02T16:46:57,916 Created temporary directory: /tmp/pip-build-tracker-5jqbfw9e 2024-11-02T16:46:57,917 Initialized build tracking at /tmp/pip-build-tracker-5jqbfw9e 2024-11-02T16:46:57,917 Created build tracker: /tmp/pip-build-tracker-5jqbfw9e 2024-11-02T16:46:57,917 Entered build tracker: /tmp/pip-build-tracker-5jqbfw9e 2024-11-02T16:46:57,918 Created temporary directory: /tmp/pip-wheel-kr98vvk4 2024-11-02T16:46:57,923 Created temporary directory: /tmp/pip-ephem-wheel-cache-t53jyoyf 2024-11-02T16:46:57,965 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-11-02T16:46:57,968 2 location(s) to search for versions of splam: 2024-11-02T16:46:57,968 * https://pypi.org/simple/splam/ 2024-11-02T16:46:57,968 * https://www.piwheels.org/simple/splam/ 2024-11-02T16:46:57,969 Fetching project page and analyzing links: https://pypi.org/simple/splam/ 2024-11-02T16:46:57,969 Getting page https://pypi.org/simple/splam/ 2024-11-02T16:46:57,971 Found index url https://pypi.org/simple/ 2024-11-02T16:46:58,136 Fetched page https://pypi.org/simple/splam/ as application/vnd.pypi.simple.v1+json 2024-11-02T16:46:58,152 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/57/2a/d68f86c46b3152c9072975cb1c8b3f2345e0f71cea763c0635ca8c5e0261/splam-0.2.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,153 Found link https://files.pythonhosted.org/packages/ba/e8/4cf0f802bf26fd6587829e3688109caef6d26e13d19ce003ac876212da15/splam-0.2.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.9 2024-11-02T16:46:58,154 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f0/97/c31f00ac8a786213c4a50dd993cd04e61af08766e9559f244fb9c3929178/splam-0.2.10-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,154 Found link https://files.pythonhosted.org/packages/72/d1/671663c98d0cfca3218b880633390493fcebf9972175a7c4d2752259f2ea/splam-0.2.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.10 2024-11-02T16:46:58,155 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/ad/36/84239a43f206dfbfe07c6e6f76ef8c54235439210640aeacc8cb20e24c2e/splam-0.2.11-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,156 Found link https://files.pythonhosted.org/packages/c7/b3/96a175c203358d735694d7d5fd9261ef8683af968e14e473e823d159cee1/splam-0.2.11.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.11 2024-11-02T16:46:58,156 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/a5/f5/e15307ccb65ec9c225b7f1af65ee2c8880ba8eb049d386f4c9da459b2e1e/splam-0.2.12-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,156 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ba/88/6cac004352d4aa92aabdfd31f9b96919f8044db486185d3fd3c924583bc8/splam-0.2.12-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,157 Found link https://files.pythonhosted.org/packages/32/fa/a9795e9df88e8ea6c6788ae171702d5f9d8ce2c3472408ab0784f08a7b91/splam-0.2.12.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.12 2024-11-02T16:46:58,158 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/59/88/fefee12f8e44d6879a0970d37b42fc4dc54010f78b1ee91f6db366c1f125/splam-0.2.13-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,158 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/64/13/d601e5e99b31891d95bc0a6201367dab38f12faaadcb6aedbee7725dca71/splam-0.2.13-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,159 Found link https://files.pythonhosted.org/packages/cf/fb/2e5425fcdb2e5fd7ff963b174b1582816154fd0373bbc96edf4e851d272d/splam-0.2.13.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.13 2024-11-02T16:46:58,159 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/da/65/a129eabb1d673da72f1d7dfd3495c01c89da78569b7f2dba2c746a0c0f29/splam-0.2.14-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,159 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/79/2fdaa68664126c8c71bac526b41e1e35e4195879170c8129a8d482f3ae7b/splam-0.2.14-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,160 Found link https://files.pythonhosted.org/packages/9b/3f/d7dd2411528494ed5062665c3b5d5d7d8422fd11fa181d5fc01ea67d7dbf/splam-0.2.14.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.14 2024-11-02T16:46:58,161 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f4/9a/e7d1f5f16d77888ac5d0935e180fa2210e875ff487909519d6871e1301da/splam-0.2.15-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,161 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/40/b6/eda61824794c736e52c09353dfbbd70eea4d0f0ab31896f3688d269ab64b/splam-0.2.15-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,162 Found link https://files.pythonhosted.org/packages/29/d0/5e9ef93e49636308cb56b70a06c8932321cb60a4aae678d8bb1d213b52b5/splam-0.2.15.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.15 2024-11-02T16:46:58,162 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e5/17/caa4b05a6370f2d197ec174fe1968f63acc357db5923efca0860b3a5e141/splam-0.2.16-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,162 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fe/a5/d90a02293e34acf5515a8f435ae90afeb823336d6232a7bedf01436a00f9/splam-0.2.17-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,163 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ef/af/7db5183d8c36a250bb4547c58610624b4d1067ea0eb119addc8986ce6ec1/splam-0.2.17-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,163 Found link https://files.pythonhosted.org/packages/26/3a/0e89dd56f9617853061d7c4ed6a220a414a01bba9f0005e54da52a1ad22e/splam-0.2.17.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.17 2024-11-02T16:46:58,164 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/bd/50/ae02dcd9e7c53df59acc9ad83ac389a886e55254cd6953614d43f0eaac60/splam-0.3.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,164 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/78/0b/8b0b45b16922007f88c9b81357cde8b84f9ea45327104b00724024e722ec/splam-0.3.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,165 Found link https://files.pythonhosted.org/packages/e5/c7/4bf13e849aefc7cfdd94f142e6267e4937c61d7fb9fbfe1119953f6a5e72/splam-0.3.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.3.0 2024-11-02T16:46:58,165 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/55/d8079e937d1f568ac9358237871b9d4d6d28abf1e8e8ec2b8073db7b166a/splam-0.3.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,166 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6d/9f/5e7c396bd04da9866f89f51574bd3fec1e691b279116e4d4de92b75b6538/splam-1.0.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,166 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/56/ae/c9e443ec09db88b2b2aaa18ebc6b12751b321d731ce21964ee188067bb0f/splam-1.0.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,167 Found link https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.0 2024-11-02T16:46:58,167 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/43/45/27c64605655d3127bf6155bc060f98fb565e631553e4f0e0a53d3922ebf3/splam-1.0.1-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,167 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/4d/0b5427df4d5d74ba5a98e28805b45fee4b15d2cad1e9aa91069306c29da7/splam-1.0.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,168 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/da/e1/11ee65eb50a2f628f92249d84cd72eddbc1386afbc82c7410fceb627d995/splam-1.0.1-py3.9-linux-x86_64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,168 Found link https://files.pythonhosted.org/packages/ad/3c/5a2fcc44ca9afa6bc1cb4fe6a30ba6495f9c1359c6b610536cb6c7998ca1/splam-1.0.1.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.1 2024-11-02T16:46:58,169 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6a/e7/e7827b0d637f018ef8d18ea969985ce37ffa520fd1bf6d0e8d43d72b749e/splam-1.0.2-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,169 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f2/ba/94da0985b6db88ba663b4e56a395d74d04283a79d0fdf476763251f5679f/splam-1.0.2-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,170 Found link https://files.pythonhosted.org/packages/b9/a6/9e7a9793d70745961aceeef78942a4e5370d10878fc5e6a132f7441766a8/splam-1.0.2.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.2 2024-11-02T16:46:58,170 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/30/c9/23c10c8ee217996cc58e6f16ffc732657d1cb3011f7cbc41ebb51927bbbb/splam-1.0.3-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,171 Found link https://files.pythonhosted.org/packages/b3/80/1ff08f5e516c2ce233a75e61e8ce3dacc34b00bd2cae4fae0d01b0d758e9/splam-1.0.3.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.3 2024-11-02T16:46:58,171 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/70/bd/3aacba5a589a5a8d4688781f1376a822b1df05526355738a85f10a6f0c86/splam-1.0.4-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,172 Found link https://files.pythonhosted.org/packages/b3/ef/1c49f24a396880a7ac6773041c067d1418ca533df5018de37f1fb49f512a/splam-1.0.4.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.4 2024-11-02T16:46:58,173 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/54/7e/ce14252ed5cbc26ad69ffe8ec6909d91f2bed9f97749fb5ba0f43a935479/splam-1.0.5-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,174 Found link https://files.pythonhosted.org/packages/5f/dd/ac054961585d4e5d71c889e8840dc096a847ac38b04295f38dbe524718e5/splam-1.0.5.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.5 2024-11-02T16:46:58,174 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f7/1e/02d35d67ba3f32f629f40824705e8ef82b6a80914fef3ffa59bcea67c965/splam-1.0.6-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,175 Found link https://files.pythonhosted.org/packages/b2/7d/e8f8b51f071b0bc4e2a1a0cc31db50c9acecb68271cd5bd5e113c7442fed/splam-1.0.6.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.6 2024-11-02T16:46:58,175 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/1d/57/3fbf056633d3332ab938f761553161346599e27c5f5c66f605c08b4fb2b3/splam-1.0.7-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,176 Found link https://files.pythonhosted.org/packages/a5/b6/ffa6c7c753ce7d9989d0e3adcb5310ecf29429dce73ffe51f2b63434c9fc/splam-1.0.7.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.7 2024-11-02T16:46:58,176 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/35/fa/76bf21536e4f60a1caae0132889ab74457d9c75a9476c3d0ec7b578870af/splam-1.0.8-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,177 Found link https://files.pythonhosted.org/packages/a5/ad/6d3495d79895726b6df06f3cd667006e5316fa3235e6919b841057f6e666/splam-1.0.8.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.8 2024-11-02T16:46:58,177 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fc/24/c13538db2c354993494537d33e4138e39d65e83f947f55d6f9d599e12a63/splam-1.0.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,178 Found link https://files.pythonhosted.org/packages/4d/2c/303bafdffb18df8357ea5c7f2bc00f9e4afd9667b9f10b411091c3adc293/splam-1.0.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.9 2024-11-02T16:46:58,178 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/eb/97/6d184eef2d7511274e92d1be778a573a0c3148510a51b031cb2cf646dd8c/splam-1.0.10-cp38-cp38-macosx_14_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,179 Found link https://files.pythonhosted.org/packages/53/d4/4f1f5ed4879f56c7a5ede7cd1f5a3bd555e963abb61c148a8ebb648e5098/splam-1.0.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.10 2024-11-02T16:46:58,180 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/c2/5f/37e24ec88bf57ccda8b24cf6ec8a440dc74d6aeb2863d06466951e345c5e/splam-1.0.11-cp38-cp38-macosx_14_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,180 Found link https://files.pythonhosted.org/packages/bb/fb/2f3de06683e7885a6bde4e344cfa83eeb99f36585d10dd2dbbd645269442/splam-1.0.11.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.11 2024-11-02T16:46:58,181 Found link https://files.pythonhosted.org/packages/ef/90/c29f40e308a3cbc5988a389ff3fb0dc90486f79ee2580010b95a47e836a6/splam-1.0.12.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.12 2024-11-02T16:46:58,182 Fetching project page and analyzing links: https://www.piwheels.org/simple/splam/ 2024-11-02T16:46:58,182 Getting page https://www.piwheels.org/simple/splam/ 2024-11-02T16:46:58,184 Found index url https://www.piwheels.org/simple/ 2024-11-02T16:46:58,236 Fetched page 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https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv7l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,268 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv6l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,268 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv7l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,268 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv6l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,269 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv7l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,269 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp311-cp311-linux_armv6l.whl#sha256=3358137f046748462107e305dd9d042c880d1ac8e4b165f0ba3872db24bc2175 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,269 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp311-cp311-linux_armv7l.whl#sha256=3358137f046748462107e305dd9d042c880d1ac8e4b165f0ba3872db24bc2175 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,269 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv6l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,269 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv7l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,270 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv6l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,270 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv7l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,270 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv6l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,270 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv7l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,270 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv6l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,271 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv7l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2024-11-02T16:46:58,271 Skipping link: not a file: https://www.piwheels.org/simple/splam/ 2024-11-02T16:46:58,271 Skipping link: not a file: https://pypi.org/simple/splam/ 2024-11-02T16:46:58,289 Given no hashes to check 1 links for project 'splam': discarding no candidates 2024-11-02T16:46:58,291 Collecting splam==1.0.12 2024-11-02T16:46:58,293 Created temporary directory: /tmp/pip-unpack-sve6wjkl 2024-11-02T16:46:58,390 Downloading splam-1.0.12.tar.gz (19.9 MB) 2024-11-02T16:47:09,702 Added splam==1.0.12 from https://files.pythonhosted.org/packages/ef/90/c29f40e308a3cbc5988a389ff3fb0dc90486f79ee2580010b95a47e836a6/splam-1.0.12.tar.gz to build tracker '/tmp/pip-build-tracker-5jqbfw9e' 2024-11-02T16:47:09,705 Running setup.py (path:/tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/setup.py) egg_info for package splam 2024-11-02T16:47:09,705 Created temporary directory: /tmp/pip-pip-egg-info-20_h87yw 2024-11-02T16:47:09,706 Preparing metadata (setup.py): started 2024-11-02T16:47:09,707 Running command python setup.py egg_info 2024-11-02T16:47:10,828 running egg_info 2024-11-02T16:47:10,855 creating /tmp/pip-pip-egg-info-20_h87yw/splam.egg-info 2024-11-02T16:47:10,856 writing /tmp/pip-pip-egg-info-20_h87yw/splam.egg-info/PKG-INFO 2024-11-02T16:47:10,860 writing dependency_links to /tmp/pip-pip-egg-info-20_h87yw/splam.egg-info/dependency_links.txt 2024-11-02T16:47:10,862 writing entry points to /tmp/pip-pip-egg-info-20_h87yw/splam.egg-info/entry_points.txt 2024-11-02T16:47:10,864 writing requirements to /tmp/pip-pip-egg-info-20_h87yw/splam.egg-info/requires.txt 2024-11-02T16:47:10,865 writing top-level names to /tmp/pip-pip-egg-info-20_h87yw/splam.egg-info/top_level.txt 2024-11-02T16:47:10,866 writing manifest file '/tmp/pip-pip-egg-info-20_h87yw/splam.egg-info/SOURCES.txt' 2024-11-02T16:47:10,953 reading manifest file '/tmp/pip-pip-egg-info-20_h87yw/splam.egg-info/SOURCES.txt' 2024-11-02T16:47:10,955 reading manifest template 'MANIFEST.in' 2024-11-02T16:47:11,468 adding license file 'LICENSE' 2024-11-02T16:47:11,554 writing manifest file '/tmp/pip-pip-egg-info-20_h87yw/splam.egg-info/SOURCES.txt' 2024-11-02T16:47:11,645 Preparing metadata (setup.py): finished with status 'done' 2024-11-02T16:47:11,650 Source in /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc has version 1.0.12, which satisfies requirement splam==1.0.12 from https://files.pythonhosted.org/packages/ef/90/c29f40e308a3cbc5988a389ff3fb0dc90486f79ee2580010b95a47e836a6/splam-1.0.12.tar.gz 2024-11-02T16:47:11,651 Removed splam==1.0.12 from https://files.pythonhosted.org/packages/ef/90/c29f40e308a3cbc5988a389ff3fb0dc90486f79ee2580010b95a47e836a6/splam-1.0.12.tar.gz from build tracker '/tmp/pip-build-tracker-5jqbfw9e' 2024-11-02T16:47:11,661 Created temporary directory: /tmp/pip-unpack-_pogftkg 2024-11-02T16:47:11,662 Created temporary directory: /tmp/pip-unpack-ewtch9ai 2024-11-02T16:47:11,662 Building wheels for collected packages: splam 2024-11-02T16:47:11,666 Created temporary directory: /tmp/pip-wheel-qo_w7xu5 2024-11-02T16:47:11,667 Building wheel for splam (setup.py): started 2024-11-02T16:47:11,668 Destination directory: /tmp/pip-wheel-qo_w7xu5 2024-11-02T16:47:11,668 Running command python setup.py bdist_wheel 2024-11-02T16:47:12,696 running bdist_wheel 2024-11-02T16:47:12,803 running build 2024-11-02T16:47:12,803 running build_py 2024-11-02T16:47:12,833 creating build/lib.linux-armv7l-cpython-39/splam 2024-11-02T16:47:12,839 copying splam/chr_size.py -> build/lib.linux-armv7l-cpython-39/splam 2024-11-02T16:47:12,842 copying splam/header.py -> build/lib.linux-armv7l-cpython-39/splam 2024-11-02T16:47:12,844 copying splam/extract_gff.py -> build/lib.linux-armv7l-cpython-39/splam 2024-11-02T16:47:12,846 copying splam/parse.py -> build/lib.linux-armv7l-cpython-39/splam 2024-11-02T16:47:12,849 copying splam/__init__.py -> build/lib.linux-armv7l-cpython-39/splam 2024-11-02T16:47:12,851 copying splam/splam.py -> build/lib.linux-armv7l-cpython-39/splam 2024-11-02T16:47:12,852 copying splam/clean_gff.py -> build/lib.linux-armv7l-cpython-39/splam 2024-11-02T16:47:12,855 copying splam/main.py -> build/lib.linux-armv7l-cpython-39/splam 2024-11-02T16:47:12,857 copying splam/prediction.py -> build/lib.linux-armv7l-cpython-39/splam 2024-11-02T16:47:12,860 copying splam/config.py -> build/lib.linux-armv7l-cpython-39/splam 2024-11-02T16:47:12,865 running build_ext 2024-11-02T16:47:13,250 -- The C compiler identification is GNU 10.2.1 2024-11-02T16:47:13,691 -- The CXX compiler identification is GNU 10.2.1 2024-11-02T16:47:13,750 -- Detecting C compiler ABI info 2024-11-02T16:47:14,107 -- Detecting C compiler ABI info - done 2024-11-02T16:47:14,164 -- Check for working C compiler: /usr/bin/cc - skipped 2024-11-02T16:47:14,167 -- Detecting C compile features 2024-11-02T16:47:14,170 -- Detecting C compile features - done 2024-11-02T16:47:14,197 -- Detecting CXX compiler ABI info 2024-11-02T16:47:14,625 -- Detecting CXX compiler ABI info - done 2024-11-02T16:47:14,685 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2024-11-02T16:47:14,687 -- Detecting CXX compile features 2024-11-02T16:47:14,690 -- Detecting CXX compile features - done 2024-11-02T16:47:14,720 -- pybind11 v2.11.0 dev1 2024-11-02T16:47:14,783 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3.6") 2024-11-02T16:47:15,304 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so 2024-11-02T16:47:15,313 -- Performing Test HAS_FLTO 2024-11-02T16:47:15,932 -- Performing Test HAS_FLTO - Success 2024-11-02T16:47:15,987 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 2024-11-02T16:47:15,988 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/include/htslib 2024-11-02T16:47:15,989 LIBRARY_OUTPUT_DIRECTORY: 2024-11-02T16:47:16,127 EXAMPLE_VERSION_INFO: 1.0.12 2024-11-02T16:47:16,128 -- Configuring done 2024-11-02T16:47:16,213 -- Generating done 2024-11-02T16:47:16,227 -- Build files have been written to: /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/build/temp.linux-armv7l-cpython-39/splam_extract 2024-11-02T16:47:16,424 Scanning dependencies of target htslib 2024-11-02T16:47:16,472 [ 2%] Creating directories for 'htslib' 2024-11-02T16:47:16,874 [ 5%] No download step for 'htslib' 2024-11-02T16:47:17,029 [ 8%] No update step for 'htslib' 2024-11-02T16:47:17,184 [ 11%] No patch step for 'htslib' 2024-11-02T16:47:17,341 [ 14%] Performing configure step for 'htslib' 2024-11-02T16:47:22,902 checking for gcc... gcc 2024-11-02T16:47:23,214 checking whether the C compiler works... yes 2024-11-02T16:47:23,215 checking for C compiler default output file name... a.out 2024-11-02T16:47:23,375 checking for suffix of executables... 2024-11-02T16:47:23,559 checking whether we are cross compiling... no 2024-11-02T16:47:23,648 checking for suffix of object files... o 2024-11-02T16:47:23,724 checking whether we are using the GNU C compiler... yes 2024-11-02T16:47:23,801 checking whether gcc accepts -g... yes 2024-11-02T16:47:23,947 checking for gcc option to accept ISO C89... none needed 2024-11-02T16:47:23,949 checking for ranlib... ranlib 2024-11-02T16:47:23,958 checking for grep that handles long lines and -e... /usr/bin/grep 2024-11-02T16:47:24,039 checking for C compiler warning flags... -Wall 2024-11-02T16:47:24,148 checking how to run the C preprocessor... gcc -E 2024-11-02T16:47:24,256 checking for egrep... /usr/bin/grep -E 2024-11-02T16:47:24,729 checking for ANSI C header files... yes 2024-11-02T16:47:24,857 checking for sys/types.h... yes 2024-11-02T16:47:24,994 checking for sys/stat.h... yes 2024-11-02T16:47:25,129 checking for stdlib.h... yes 2024-11-02T16:47:25,272 checking for string.h... yes 2024-11-02T16:47:25,416 checking for memory.h... yes 2024-11-02T16:47:25,587 checking for strings.h... yes 2024-11-02T16:47:25,730 checking for inttypes.h... yes 2024-11-02T16:47:25,872 checking for stdint.h... yes 2024-11-02T16:47:26,028 checking for unistd.h... yes 2024-11-02T16:47:26,200 checking whether _XOPEN_SOURCE is declared... no 2024-11-02T16:47:26,400 checking C compiler flags needed for sse4.1... none 2024-11-02T16:47:26,568 checking C compiler flags needed for avx2... none 2024-11-02T16:47:26,736 checking C compiler flags needed for avx512f... none 2024-11-02T16:47:26,740 checking for pkg-config... /usr/bin/pkg-config 2024-11-02T16:47:26,748 checking pkg-config is at least version 0.9.0... yes 2024-11-02T16:47:26,750 checking for special C compiler options needed for large files... no 2024-11-02T16:47:26,925 checking for _FILE_OFFSET_BITS value needed for large files... 64 2024-11-02T16:47:26,941 checking shared library type for unknown-Linux... plain .so 2024-11-02T16:47:27,124 checking whether the linker supports versioned symbols... yes 2024-11-02T16:47:27,363 checking whether the compiler accepts -fvisibility=hidden... yes 2024-11-02T16:47:27,381 checking for stdlib.h... (cached) yes 2024-11-02T16:47:27,405 checking for unistd.h... (cached) yes 2024-11-02T16:47:27,568 checking for sys/param.h... yes 2024-11-02T16:47:27,759 checking for getpagesize... yes 2024-11-02T16:47:28,072 checking for working mmap... yes 2024-11-02T16:47:28,294 checking for gmtime_r... yes 2024-11-02T16:47:28,500 checking for fsync... yes 2024-11-02T16:47:28,703 checking for drand48... yes 2024-11-02T16:47:28,933 checking for srand48_deterministic... no 2024-11-02T16:47:29,143 checking whether fdatasync is declared... yes 2024-11-02T16:47:29,319 checking for fdatasync... yes 2024-11-02T16:47:29,717 checking for library containing log... -lm 2024-11-02T16:47:29,834 checking for zlib.h... yes 2024-11-02T16:47:30,036 checking for inflate in -lz... yes 2024-11-02T16:47:30,218 checking for library containing recv... none required 2024-11-02T16:47:30,307 checking for bzlib.h... yes 2024-11-02T16:47:30,486 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2024-11-02T16:47:30,501 checking whether htscodecs files are present... yes 2024-11-02T16:47:30,502 configure: WARNING: GCS support not enabled: requires libcurl support 2024-11-02T16:47:30,503 configure: WARNING: S3 support not enabled: requires libcurl support 2024-11-02T16:47:30,713 checking for library containing regcomp... none required 2024-11-02T16:47:30,785 configure: creating ./config.status 2024-11-02T16:47:31,114 config.status: creating config.mk 2024-11-02T16:47:31,158 config.status: creating htslib.pc.tmp 2024-11-02T16:47:31,206 config.status: creating config.h 2024-11-02T16:47:31,241 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2024-11-02T16:47:31,407 [ 17%] Performing build step for 'htslib' 2024-11-02T16:47:34,683 fatal: not a git repository: /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/include/htslib/htscodecs/../.git/modules/htscodecs 2024-11-02T16:47:34,690 Updating htscodecs/htscodecs/version.h : #define HTSCODECS_VERSION_TEXT "" 2024-11-02T16:48:30,301 [ 20%] No install step for 'htslib' 2024-11-02T16:48:30,418 [ 22%] Completed 'htslib' 2024-11-02T16:48:30,579 [ 22%] Built target htslib 2024-11-02T16:48:30,805 Scanning dependencies of target splam_clean 2024-11-02T16:48:30,863 [ 25%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2024-11-02T16:48:36,179 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2024-11-02T16:48:36,179 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,179 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-11-02T16:48:36,179 | ^~~~~~~~~~ 2024-11-02T16:48:36,180 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,180 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-11-02T16:48:36,180 | ^~~~~~ 2024-11-02T16:48:36,180 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,180 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-11-02T16:48:36,180 | ^~~~ 2024-11-02T16:48:36,181 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,181 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-11-02T16:48:36,181 | ^~~~ 2024-11-02T16:48:36,182 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,182 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-11-02T16:48:36,182 | ^~~~~~~~~~ 2024-11-02T16:48:36,183 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,183 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-11-02T16:48:36,183 | ^~~~~~ 2024-11-02T16:48:36,183 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,184 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-11-02T16:48:36,184 | ^~~~ 2024-11-02T16:48:36,184 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,184 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-11-02T16:48:36,184 | ^~~~ 2024-11-02T16:48:36,185 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,185 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-11-02T16:48:36,186 | ^~~~~~~~~~ 2024-11-02T16:48:36,186 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,186 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-11-02T16:48:36,186 | ^~~~~~~ 2024-11-02T16:48:36,186 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,187 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-11-02T16:48:36,187 | ^~~~ 2024-11-02T16:48:36,187 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,187 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-11-02T16:48:36,187 | ^~~~ 2024-11-02T16:48:36,187 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,188 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-11-02T16:48:36,188 | ^~~~ 2024-11-02T16:48:36,189 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,189 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-11-02T16:48:36,189 | ^~~~~~~~~~ 2024-11-02T16:48:36,189 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,190 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-11-02T16:48:36,190 | ^~~~~~~ 2024-11-02T16:48:36,190 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,190 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-11-02T16:48:36,190 | ^~~~ 2024-11-02T16:48:36,191 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,191 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-11-02T16:48:36,191 | ^~~~ 2024-11-02T16:48:36,191 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:48:36,191 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-11-02T16:48:36,191 | ^~~~ 2024-11-02T16:48:41,199 [ 28%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2024-11-02T16:48:49,191 [ 31%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2024-11-02T16:48:49,667 [ 34%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2024-11-02T16:48:50,174 [ 37%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2024-11-02T16:48:50,480 [ 40%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2024-11-02T16:48:52,232 [ 42%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2024-11-02T16:48:54,918 [ 45%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2024-11-02T16:48:58,910 [ 48%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2024-11-02T16:49:03,482 [ 51%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2024-11-02T16:49:07,649 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2024-11-02T16:49:11,691 [ 57%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2024-11-02T16:49:15,175 [ 60%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2024-11-02T16:49:17,354 [ 62%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2024-11-02T16:49:18,430 [ 65%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2024-11-02T16:49:19,249 [ 68%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2024-11-02T16:49:20,221 [ 71%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so 2024-11-02T16:49:41,268 [ 71%] Built target splam_clean 2024-11-02T16:49:41,417 Scanning dependencies of target splam_extract 2024-11-02T16:49:41,470 [ 74%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2024-11-02T16:49:51,679 [ 77%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2024-11-02T16:49:55,656 [ 80%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2024-11-02T16:49:58,623 [ 82%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2024-11-02T16:50:02,669 [ 85%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2024-11-02T16:50:06,168 [ 88%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2024-11-02T16:50:08,366 [ 91%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2024-11-02T16:50:09,442 [ 94%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2024-11-02T16:50:10,254 [ 97%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2024-11-02T16:50:11,199 [100%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so 2024-11-02T16:50:25,361 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/include/gclib/GVec.hh: In member function ‘setCapacity’: 2024-11-02T16:50:25,362 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/include/gclib/GVec.hh:107:14: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2024-11-02T16:50:25,362 107 | fArray=new OBJ[NewCapacity]; 2024-11-02T16:50:25,362 | ^ 2024-11-02T16:50:25,363 /usr/include/c++/10/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2024-11-02T16:50:25,363 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2024-11-02T16:50:25,363 | ^ 2024-11-02T16:50:33,614 [100%] Built target splam_extract 2024-11-02T16:50:33,997 -- The C compiler identification is GNU 10.2.1 2024-11-02T16:50:34,352 -- The CXX compiler identification is GNU 10.2.1 2024-11-02T16:50:34,398 -- Detecting C compiler ABI info 2024-11-02T16:50:34,739 -- Detecting C compiler ABI info - done 2024-11-02T16:50:34,797 -- Check for working C compiler: /usr/bin/cc - skipped 2024-11-02T16:50:34,798 -- Detecting C compile features 2024-11-02T16:50:34,801 -- Detecting C compile features - done 2024-11-02T16:50:34,825 -- Detecting CXX compiler ABI info 2024-11-02T16:50:35,338 -- Detecting CXX compiler ABI info - done 2024-11-02T16:50:35,397 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2024-11-02T16:50:35,399 -- Detecting CXX compile features 2024-11-02T16:50:35,402 -- Detecting CXX compile features - done 2024-11-02T16:50:35,429 -- pybind11 v2.11.0 dev1 2024-11-02T16:50:35,496 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3.6") 2024-11-02T16:50:36,054 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so 2024-11-02T16:50:36,062 -- Performing Test HAS_FLTO 2024-11-02T16:50:36,936 -- Performing Test HAS_FLTO - Success 2024-11-02T16:50:36,976 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 2024-11-02T16:50:36,977 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/include/htslib 2024-11-02T16:50:36,977 LIBRARY_OUTPUT_DIRECTORY: 2024-11-02T16:50:37,113 EXAMPLE_VERSION_INFO: 1.0.12 2024-11-02T16:50:37,115 -- Configuring done 2024-11-02T16:50:37,201 -- Generating done 2024-11-02T16:50:37,214 -- Build files have been written to: /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/build/temp.linux-armv7l-cpython-39/splam_clean 2024-11-02T16:50:37,413 Scanning dependencies of target htslib 2024-11-02T16:50:37,462 [ 2%] Creating directories for 'htslib' 2024-11-02T16:50:37,880 [ 5%] No download step for 'htslib' 2024-11-02T16:50:38,009 [ 8%] No update step for 'htslib' 2024-11-02T16:50:38,127 [ 11%] No patch step for 'htslib' 2024-11-02T16:50:38,240 [ 14%] Performing configure step for 'htslib' 2024-11-02T16:50:42,687 checking for gcc... gcc 2024-11-02T16:50:43,014 checking whether the C compiler works... yes 2024-11-02T16:50:43,015 checking for C compiler default output file name... a.out 2024-11-02T16:50:43,170 checking for suffix of executables... 2024-11-02T16:50:43,345 checking whether we are cross compiling... no 2024-11-02T16:50:43,434 checking for suffix of object files... o 2024-11-02T16:50:43,511 checking whether we are using the GNU C compiler... yes 2024-11-02T16:50:43,598 checking whether gcc accepts -g... yes 2024-11-02T16:50:43,756 checking for gcc option to accept ISO C89... none needed 2024-11-02T16:50:43,758 checking for ranlib... ranlib 2024-11-02T16:50:43,766 checking for grep that handles long lines and -e... /usr/bin/grep 2024-11-02T16:50:43,848 checking for C compiler warning flags... -Wall 2024-11-02T16:50:43,970 checking how to run the C preprocessor... gcc -E 2024-11-02T16:50:44,298 checking for egrep... /usr/bin/grep -E 2024-11-02T16:50:44,815 checking for ANSI C header files... yes 2024-11-02T16:50:44,934 checking for sys/types.h... yes 2024-11-02T16:50:45,068 checking for sys/stat.h... yes 2024-11-02T16:50:45,200 checking for stdlib.h... yes 2024-11-02T16:50:45,345 checking for string.h... yes 2024-11-02T16:50:45,545 checking for memory.h... yes 2024-11-02T16:50:45,685 checking for strings.h... yes 2024-11-02T16:50:45,829 checking for inttypes.h... yes 2024-11-02T16:50:45,973 checking for stdint.h... yes 2024-11-02T16:50:46,128 checking for unistd.h... yes 2024-11-02T16:50:46,298 checking whether _XOPEN_SOURCE is declared... no 2024-11-02T16:50:46,467 checking C compiler flags needed for sse4.1... none 2024-11-02T16:50:46,636 checking C compiler flags needed for avx2... none 2024-11-02T16:50:46,803 checking C compiler flags needed for avx512f... none 2024-11-02T16:50:46,806 checking for pkg-config... /usr/bin/pkg-config 2024-11-02T16:50:46,811 checking pkg-config is at least version 0.9.0... yes 2024-11-02T16:50:46,813 checking for special C compiler options needed for large files... no 2024-11-02T16:50:47,005 checking for _FILE_OFFSET_BITS value needed for large files... 64 2024-11-02T16:50:47,027 checking shared library type for unknown-Linux... plain .so 2024-11-02T16:50:47,236 checking whether the linker supports versioned symbols... yes 2024-11-02T16:50:47,404 checking whether the compiler accepts -fvisibility=hidden... yes 2024-11-02T16:50:47,417 checking for stdlib.h... (cached) yes 2024-11-02T16:50:47,441 checking for unistd.h... (cached) yes 2024-11-02T16:50:47,604 checking for sys/param.h... yes 2024-11-02T16:50:47,798 checking for getpagesize... yes 2024-11-02T16:50:48,136 checking for working mmap... yes 2024-11-02T16:50:48,334 checking for gmtime_r... yes 2024-11-02T16:50:48,535 checking for fsync... yes 2024-11-02T16:50:48,767 checking for drand48... yes 2024-11-02T16:50:48,994 checking for srand48_deterministic... no 2024-11-02T16:50:49,153 checking whether fdatasync is declared... yes 2024-11-02T16:50:49,326 checking for fdatasync... yes 2024-11-02T16:50:49,719 checking for library containing log... -lm 2024-11-02T16:50:49,818 checking for zlib.h... yes 2024-11-02T16:50:50,003 checking for inflate in -lz... yes 2024-11-02T16:50:50,188 checking for library containing recv... none required 2024-11-02T16:50:50,299 checking for bzlib.h... yes 2024-11-02T16:50:50,476 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2024-11-02T16:50:50,486 checking whether htscodecs files are present... yes 2024-11-02T16:50:50,488 configure: WARNING: GCS support not enabled: requires libcurl support 2024-11-02T16:50:50,488 configure: WARNING: S3 support not enabled: requires libcurl support 2024-11-02T16:50:50,669 checking for library containing regcomp... none required 2024-11-02T16:50:50,733 configure: creating ./config.status 2024-11-02T16:50:51,058 config.status: creating config.mk 2024-11-02T16:50:51,119 config.status: creating htslib.pc.tmp 2024-11-02T16:50:51,190 config.status: creating config.h 2024-11-02T16:50:51,219 config.status: config.h is unchanged 2024-11-02T16:50:51,228 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2024-11-02T16:50:51,442 [ 17%] Performing build step for 'htslib' 2024-11-02T16:50:51,494 fatal: not a git repository: /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/include/htslib/htscodecs/../.git/modules/htscodecs 2024-11-02T16:50:51,626 [ 20%] No install step for 'htslib' 2024-11-02T16:50:51,743 [ 22%] Completed 'htslib' 2024-11-02T16:50:51,898 [ 22%] Built target htslib 2024-11-02T16:50:52,071 Scanning dependencies of target splam_clean 2024-11-02T16:50:52,141 [ 25%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2024-11-02T16:50:57,584 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2024-11-02T16:50:57,584 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,584 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-11-02T16:50:57,584 | ^~~~~~~~~~ 2024-11-02T16:50:57,585 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,585 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-11-02T16:50:57,585 | ^~~~~~ 2024-11-02T16:50:57,585 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,585 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-11-02T16:50:57,585 | ^~~~ 2024-11-02T16:50:57,586 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,586 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2024-11-02T16:50:57,586 | ^~~~ 2024-11-02T16:50:57,587 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,587 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-11-02T16:50:57,587 | ^~~~~~~~~~ 2024-11-02T16:50:57,588 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,588 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-11-02T16:50:57,588 | ^~~~~~ 2024-11-02T16:50:57,588 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,588 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-11-02T16:50:57,589 | ^~~~ 2024-11-02T16:50:57,589 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,589 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2024-11-02T16:50:57,589 | ^~~~ 2024-11-02T16:50:57,590 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,590 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-11-02T16:50:57,591 | ^~~~~~~~~~ 2024-11-02T16:50:57,591 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,591 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-11-02T16:50:57,591 | ^~~~~~~ 2024-11-02T16:50:57,591 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,592 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-11-02T16:50:57,592 | ^~~~ 2024-11-02T16:50:57,592 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,592 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-11-02T16:50:57,592 | ^~~~ 2024-11-02T16:50:57,593 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,593 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2024-11-02T16:50:57,593 | ^~~~ 2024-11-02T16:50:57,594 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,594 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-11-02T16:50:57,594 | ^~~~~~~~~~ 2024-11-02T16:50:57,594 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,595 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-11-02T16:50:57,595 | ^~~~~~~ 2024-11-02T16:50:57,595 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,595 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-11-02T16:50:57,595 | ^~~~ 2024-11-02T16:50:57,596 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,596 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-11-02T16:50:57,596 | ^~~~ 2024-11-02T16:50:57,596 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2024-11-02T16:50:57,596 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2024-11-02T16:50:57,596 | ^~~~ 2024-11-02T16:51:02,568 [ 28%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2024-11-02T16:51:10,622 [ 31%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2024-11-02T16:51:11,108 [ 34%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2024-11-02T16:51:11,618 [ 37%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2024-11-02T16:51:11,929 [ 40%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2024-11-02T16:51:13,902 [ 42%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2024-11-02T16:51:16,607 [ 45%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2024-11-02T16:51:20,818 [ 48%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2024-11-02T16:51:25,375 [ 51%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2024-11-02T16:51:29,584 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2024-11-02T16:51:33,614 [ 57%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2024-11-02T16:51:37,112 [ 60%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2024-11-02T16:51:39,318 [ 62%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2024-11-02T16:51:40,388 [ 65%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2024-11-02T16:51:41,170 [ 68%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2024-11-02T16:51:42,119 [ 71%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so 2024-11-02T16:52:03,094 [ 71%] Built target splam_clean 2024-11-02T16:52:03,243 Scanning dependencies of target splam_extract 2024-11-02T16:52:03,299 [ 74%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2024-11-02T16:52:13,467 [ 77%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2024-11-02T16:52:17,433 [ 80%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2024-11-02T16:52:20,128 [ 82%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2024-11-02T16:52:24,167 [ 85%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2024-11-02T16:52:27,672 [ 88%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2024-11-02T16:52:29,866 [ 91%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2024-11-02T16:52:30,945 [ 94%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2024-11-02T16:52:31,729 [ 97%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2024-11-02T16:52:32,684 [100%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so 2024-11-02T16:52:46,989 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/include/gclib/GVec.hh: In member function ‘setCapacity’: 2024-11-02T16:52:46,990 /tmp/pip-wheel-kr98vvk4/splam_b199e1cd8cb343e98f97bf883c0cedfc/include/gclib/GVec.hh:107:14: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2024-11-02T16:52:46,990 107 | fArray=new OBJ[NewCapacity]; 2024-11-02T16:52:46,990 | ^ 2024-11-02T16:52:46,990 /usr/include/c++/10/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2024-11-02T16:52:46,990 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2024-11-02T16:52:46,990 | ^ 2024-11-02T16:52:55,240 [100%] Built target splam_extract 2024-11-02T16:52:55,353 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-11-02T16:52:55,353 !! 2024-11-02T16:52:55,354 ******************************************************************************** 2024-11-02T16:52:55,354 Please avoid running ``setup.py`` directly. 2024-11-02T16:52:55,354 Instead, use pypa/build, pypa/installer or other 2024-11-02T16:52:55,354 standards-based tools. 2024-11-02T16:52:55,355 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-11-02T16:52:55,355 ******************************************************************************** 2024-11-02T16:52:55,355 !! 2024-11-02T16:52:55,355 self.initialize_options() 2024-11-02T16:52:55,391 installing to build/bdist.linux-armv7l/wheel 2024-11-02T16:52:55,392 running install 2024-11-02T16:52:55,419 running install_lib 2024-11-02T16:52:55,446 creating build/bdist.linux-armv7l/wheel 2024-11-02T16:52:55,447 copying build/lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2024-11-02T16:52:55,469 creating build/bdist.linux-armv7l/wheel/splam 2024-11-02T16:52:55,470 copying build/lib.linux-armv7l-cpython-39/splam/chr_size.py -> build/bdist.linux-armv7l/wheel/./splam 2024-11-02T16:52:55,474 copying build/lib.linux-armv7l-cpython-39/splam/header.py -> build/bdist.linux-armv7l/wheel/./splam 2024-11-02T16:52:55,475 copying build/lib.linux-armv7l-cpython-39/splam/extract_gff.py -> build/bdist.linux-armv7l/wheel/./splam 2024-11-02T16:52:55,477 copying build/lib.linux-armv7l-cpython-39/splam/parse.py -> build/bdist.linux-armv7l/wheel/./splam 2024-11-02T16:52:55,479 copying build/lib.linux-armv7l-cpython-39/splam/__init__.py -> build/bdist.linux-armv7l/wheel/./splam 2024-11-02T16:52:55,481 copying build/lib.linux-armv7l-cpython-39/splam/splam.py -> build/bdist.linux-armv7l/wheel/./splam 2024-11-02T16:52:55,483 copying build/lib.linux-armv7l-cpython-39/splam/clean_gff.py -> build/bdist.linux-armv7l/wheel/./splam 2024-11-02T16:52:55,485 copying build/lib.linux-armv7l-cpython-39/splam/main.py -> build/bdist.linux-armv7l/wheel/./splam 2024-11-02T16:52:55,487 copying build/lib.linux-armv7l-cpython-39/splam/prediction.py -> build/bdist.linux-armv7l/wheel/./splam 2024-11-02T16:52:55,489 copying build/lib.linux-armv7l-cpython-39/splam/config.py -> build/bdist.linux-armv7l/wheel/./splam 2024-11-02T16:52:55,491 copying build/lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2024-11-02T16:52:55,520 running install_egg_info 2024-11-02T16:52:55,553 running egg_info 2024-11-02T16:52:55,580 writing splam.egg-info/PKG-INFO 2024-11-02T16:52:55,586 writing dependency_links to splam.egg-info/dependency_links.txt 2024-11-02T16:52:55,587 writing entry points to splam.egg-info/entry_points.txt 2024-11-02T16:52:55,589 writing requirements to splam.egg-info/requires.txt 2024-11-02T16:52:55,590 writing top-level names to splam.egg-info/top_level.txt 2024-11-02T16:52:55,622 reading manifest file 'splam.egg-info/SOURCES.txt' 2024-11-02T16:52:56,058 reading manifest template 'MANIFEST.in' 2024-11-02T16:52:56,501 adding license file 'LICENSE' 2024-11-02T16:52:56,637 writing manifest file 'splam.egg-info/SOURCES.txt' 2024-11-02T16:52:56,641 Copying splam.egg-info to build/bdist.linux-armv7l/wheel/./splam-1.0.12-py3.9.egg-info 2024-11-02T16:52:56,657 running install_scripts 2024-11-02T16:52:56,715 creating build/bdist.linux-armv7l/wheel/splam-1.0.12.dist-info/WHEEL 2024-11-02T16:52:56,718 creating '/tmp/pip-wheel-qo_w7xu5/splam-1.0.12-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-11-02T16:52:57,007 adding 'splam_clean.cpython-39-arm-linux-gnueabihf.so' 2024-11-02T16:52:57,278 adding 'splam_extract.cpython-39-arm-linux-gnueabihf.so' 2024-11-02T16:52:57,289 adding 'splam/__init__.py' 2024-11-02T16:52:57,295 adding 'splam/chr_size.py' 2024-11-02T16:52:57,297 adding 'splam/clean_gff.py' 2024-11-02T16:52:57,298 adding 'splam/config.py' 2024-11-02T16:52:57,299 adding 'splam/extract_gff.py' 2024-11-02T16:52:57,300 adding 'splam/header.py' 2024-11-02T16:52:57,302 adding 'splam/main.py' 2024-11-02T16:52:57,304 adding 'splam/parse.py' 2024-11-02T16:52:57,306 adding 'splam/prediction.py' 2024-11-02T16:52:57,308 adding 'splam/splam.py' 2024-11-02T16:52:57,310 adding 'splam-1.0.12.dist-info/LICENSE' 2024-11-02T16:52:57,312 adding 'splam-1.0.12.dist-info/METADATA' 2024-11-02T16:52:57,313 adding 'splam-1.0.12.dist-info/WHEEL' 2024-11-02T16:52:57,314 adding 'splam-1.0.12.dist-info/entry_points.txt' 2024-11-02T16:52:57,315 adding 'splam-1.0.12.dist-info/top_level.txt' 2024-11-02T16:52:57,316 adding 'splam-1.0.12.dist-info/RECORD' 2024-11-02T16:52:57,334 removing build/bdist.linux-armv7l/wheel 2024-11-02T16:52:57,438 Building wheel for splam (setup.py): finished with status 'done' 2024-11-02T16:52:57,450 Created wheel for splam: filename=splam-1.0.12-cp39-cp39-linux_armv7l.whl size=927933 sha256=e25b74b7bad16990e348746c64d20dce34669ddec84a189c0a78bddf1b0ad549 2024-11-02T16:52:57,451 Stored in directory: /tmp/pip-ephem-wheel-cache-t53jyoyf/wheels/de/a2/af/5517c2cf25b4f0aea0e4f960e5023451c6986bdf1a691371f1 2024-11-02T16:52:57,464 Successfully built splam 2024-11-02T16:52:57,487 Removed build tracker: '/tmp/pip-build-tracker-5jqbfw9e'