2024-11-03T19:02:10,267 Created temporary directory: /tmp/pip-build-tracker-8ie9bnt1
2024-11-03T19:02:10,268 Initialized build tracking at /tmp/pip-build-tracker-8ie9bnt1
2024-11-03T19:02:10,268 Created build tracker: /tmp/pip-build-tracker-8ie9bnt1
2024-11-03T19:02:10,269 Entered build tracker: /tmp/pip-build-tracker-8ie9bnt1
2024-11-03T19:02:10,270 Created temporary directory: /tmp/pip-wheel-rxbkvnm3
2024-11-03T19:02:10,275 Created temporary directory: /tmp/pip-ephem-wheel-cache-ynv984q0
2024-11-03T19:02:10,322 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-11-03T19:02:10,325 2 location(s) to search for versions of proteomedataprep:
2024-11-03T19:02:10,325 * https://pypi.org/simple/proteomedataprep/
2024-11-03T19:02:10,325 * https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T19:02:10,326 Fetching project page and analyzing links: https://pypi.org/simple/proteomedataprep/
2024-11-03T19:02:10,326 Getting page https://pypi.org/simple/proteomedataprep/
2024-11-03T19:02:10,328 Found index url https://pypi.org/simple/
2024-11-03T19:02:10,614 Fetched page https://pypi.org/simple/proteomedataprep/ as application/vnd.pypi.simple.v1+json
2024-11-03T19:02:10,617   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/43/6b/4e39e06e38aaf068629784a7295f5a051bf2f045fda0d161ac781e77fed8/ProteomeDataPrep-0.1.0-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T19:02:10,618   Found link https://files.pythonhosted.org/packages/c5/aa/27a6f70896dfb99a924f00c909a438019868aec0e1e7d48696edd83ec7c3/proteomedataprep-0.1.0.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.1.0
2024-11-03T19:02:10,619   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/c4/44/e6d782cb71a9efd4b62a6db38610962ba23731e2b1de6e03c3247a74db5a/ProteomeDataPrep-0.2.0-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T19:02:10,620   Found link https://files.pythonhosted.org/packages/af/e3/f1d00196524835d572126c422fcf300df4947749200d430492580037c55a/proteomedataprep-0.2.0.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.0
2024-11-03T19:02:10,620   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/71/4d/1a0a049752b2614e34d3b027a66853f242586403db0ae623c789716c34bc/ProteomeDataPrep-0.2.1-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T19:02:10,621   Found link https://files.pythonhosted.org/packages/d0/e3/995cdf9ab27398225e07fe4874f79bf81a27a13e52d59a55f222a94ac518/proteomedataprep-0.2.1.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.1
2024-11-03T19:02:10,622   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/ac/64/a3abb82026c082f787dfc15ba35271a8ec9f8a092e368226f5912dda8450/ProteomeDataPrep-0.2.2-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T19:02:10,623   Found link https://files.pythonhosted.org/packages/89/e2/d0d864b83e71e2c0551230b154fb8c1898c0553927e494888be78644ba86/proteomedataprep-0.2.2.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.2
2024-11-03T19:02:10,624   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/2f/4f/34eb6fb5ef8ad1fd3183d5b9d2721dc619c7b5cd28dcb724dcdb58c0a8b7/ProteomeDataPrep-0.2.3-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T19:02:10,624   Found link https://files.pythonhosted.org/packages/ae/d0/c6aaf2bb351ef8754e19916365ee7728d91a89627591eba8d7c1f3b0f0fd/proteomedataprep-0.2.3.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.3
2024-11-03T19:02:10,625   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/ad/04/1e3763d8b16ec3a5aed7213b2fc58f08f3fc8b6972a121b47c2405f6be47/ProteomeDataPrep-0.2.4-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T19:02:10,626   Found link https://files.pythonhosted.org/packages/46/c2/4b16b50011de85d52c84928a3c2632c169252f9aebefb9e9629ec57c163f/proteomedataprep-0.2.4.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.4
2024-11-03T19:02:10,627 Fetching project page and analyzing links: https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T19:02:10,628 Getting page https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T19:02:10,629 Found index url https://www.piwheels.org/simple/
2024-11-03T19:02:10,797 Fetched page https://www.piwheels.org/simple/proteomedataprep/ as text/html
2024-11-03T19:02:10,799   Skipping link: No binaries permitted for proteomedataprep: https://www.piwheels.org/simple/proteomedataprep/ProteomeDataPrep-0.1.0-py3-none-any.whl#sha256=d8ad9f89b3d8739e9e7779cafe89fe7ecb1dd70716a6a1141b2f2aec90b7af6d (from https://www.piwheels.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T19:02:10,799 Skipping link: not a file: https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T19:02:10,800 Skipping link: not a file: https://pypi.org/simple/proteomedataprep/
2024-11-03T19:02:10,818 Given no hashes to check 1 links for project 'proteomedataprep': discarding no candidates
2024-11-03T19:02:10,820 Collecting proteomedataprep==0.2.0
2024-11-03T19:02:10,822   Created temporary directory: /tmp/pip-unpack-6nva6krm
2024-11-03T19:02:11,410   Downloading proteomedataprep-0.2.0.tar.gz (836 kB)
2024-11-03T19:02:11,711   Added proteomedataprep==0.2.0 from https://files.pythonhosted.org/packages/af/e3/f1d00196524835d572126c422fcf300df4947749200d430492580037c55a/proteomedataprep-0.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-8ie9bnt1'
2024-11-03T19:02:11,713   Running setup.py (path:/tmp/pip-wheel-rxbkvnm3/proteomedataprep_fcee73a348c14828acdd52e9b5be2ee3/setup.py) egg_info for package proteomedataprep
2024-11-03T19:02:11,714   Created temporary directory: /tmp/pip-pip-egg-info-fxrmn_4t
2024-11-03T19:02:11,714   Preparing metadata (setup.py): started
2024-11-03T19:02:11,716   Running command python setup.py egg_info
2024-11-03T19:02:12,815   running egg_info
2024-11-03T19:02:12,842   creating /tmp/pip-pip-egg-info-fxrmn_4t/ProteomeDataPrep.egg-info
2024-11-03T19:02:12,844   writing /tmp/pip-pip-egg-info-fxrmn_4t/ProteomeDataPrep.egg-info/PKG-INFO
2024-11-03T19:02:12,847   writing dependency_links to /tmp/pip-pip-egg-info-fxrmn_4t/ProteomeDataPrep.egg-info/dependency_links.txt
2024-11-03T19:02:12,848   writing requirements to /tmp/pip-pip-egg-info-fxrmn_4t/ProteomeDataPrep.egg-info/requires.txt
2024-11-03T19:02:12,850   writing top-level names to /tmp/pip-pip-egg-info-fxrmn_4t/ProteomeDataPrep.egg-info/top_level.txt
2024-11-03T19:02:12,851   writing manifest file '/tmp/pip-pip-egg-info-fxrmn_4t/ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T19:02:12,939   reading manifest file '/tmp/pip-pip-egg-info-fxrmn_4t/ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T19:02:12,943   writing manifest file '/tmp/pip-pip-egg-info-fxrmn_4t/ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T19:02:13,050   Preparing metadata (setup.py): finished with status 'done'
2024-11-03T19:02:13,055   Source in /tmp/pip-wheel-rxbkvnm3/proteomedataprep_fcee73a348c14828acdd52e9b5be2ee3 has version 0.2.0, which satisfies requirement proteomedataprep==0.2.0 from https://files.pythonhosted.org/packages/af/e3/f1d00196524835d572126c422fcf300df4947749200d430492580037c55a/proteomedataprep-0.2.0.tar.gz
2024-11-03T19:02:13,055   Removed proteomedataprep==0.2.0 from https://files.pythonhosted.org/packages/af/e3/f1d00196524835d572126c422fcf300df4947749200d430492580037c55a/proteomedataprep-0.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-8ie9bnt1'
2024-11-03T19:02:13,062 Created temporary directory: /tmp/pip-unpack-dgy9nwuk
2024-11-03T19:02:13,063 Created temporary directory: /tmp/pip-unpack-4joqen3n
2024-11-03T19:02:13,063 Building wheels for collected packages: proteomedataprep
2024-11-03T19:02:13,068   Created temporary directory: /tmp/pip-wheel-58mvb1cx
2024-11-03T19:02:13,068   Building wheel for proteomedataprep (setup.py): started
2024-11-03T19:02:13,070   Destination directory: /tmp/pip-wheel-58mvb1cx
2024-11-03T19:02:13,070   Running command python setup.py bdist_wheel
2024-11-03T19:02:14,094   running bdist_wheel
2024-11-03T19:02:14,230   running build
2024-11-03T19:02:14,230   running build_py
2024-11-03T19:02:14,261   creating build/lib/proteome_data_prep
2024-11-03T19:02:14,263   copying proteome_data_prep/data_container.py -> build/lib/proteome_data_prep
2024-11-03T19:02:14,266   copying proteome_data_prep/process_utils.py -> build/lib/proteome_data_prep
2024-11-03T19:02:14,268   copying proteome_data_prep/data_loader.py -> build/lib/proteome_data_prep
2024-11-03T19:02:14,271   copying proteome_data_prep/data_utils.py -> build/lib/proteome_data_prep
2024-11-03T19:02:14,273   copying proteome_data_prep/__init__.py -> build/lib/proteome_data_prep
2024-11-03T19:02:14,275   running egg_info
2024-11-03T19:02:14,305   writing ProteomeDataPrep.egg-info/PKG-INFO
2024-11-03T19:02:14,308   writing dependency_links to ProteomeDataPrep.egg-info/dependency_links.txt
2024-11-03T19:02:14,311   writing requirements to ProteomeDataPrep.egg-info/requires.txt
2024-11-03T19:02:14,312   writing top-level names to ProteomeDataPrep.egg-info/top_level.txt
2024-11-03T19:02:14,343   reading manifest file 'ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T19:02:14,348   writing manifest file 'ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T19:02:14,351   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'proteome_data_prep.data' is absent from the `packages` configuration.
2024-11-03T19:02:14,351   !!

2024-11-03T19:02:14,353           ********************************************************************************
2024-11-03T19:02:14,353           ############################
2024-11-03T19:02:14,354           # Package would be ignored #
2024-11-03T19:02:14,354           ############################
2024-11-03T19:02:14,355           Python recognizes 'proteome_data_prep.data' as an importable package[^1],
2024-11-03T19:02:14,356           but it is absent from setuptools' `packages` configuration.

2024-11-03T19:02:14,357           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-03T19:02:14,358           package, please make sure that 'proteome_data_prep.data' is explicitly added
2024-11-03T19:02:14,359           to the `packages` configuration field.

2024-11-03T19:02:14,359           Alternatively, you can also rely on setuptools' discovery methods
2024-11-03T19:02:14,360           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-03T19:02:14,361           instead of `find_packages(...)`/`find:`).

2024-11-03T19:02:14,362           You can read more about "package discovery" on setuptools documentation page:

2024-11-03T19:02:14,364           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-03T19:02:14,366           If you don't want 'proteome_data_prep.data' to be distributed and are
2024-11-03T19:02:14,366           already explicitly excluding 'proteome_data_prep.data' via
2024-11-03T19:02:14,367           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-03T19:02:14,367           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-03T19:02:14,368           combination with a more fine grained `package-data` configuration.

2024-11-03T19:02:14,369           You can read more about "package data files" on setuptools documentation page:

2024-11-03T19:02:14,370           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-03T19:02:14,372           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-03T19:02:14,372                 even if it does not contain any `.py` files.
2024-11-03T19:02:14,373                 On the other hand, currently there is no concept of package data
2024-11-03T19:02:14,374                 directory, all directories are treated like packages.
2024-11-03T19:02:14,374           ********************************************************************************

2024-11-03T19:02:14,375   !!
2024-11-03T19:02:14,376     check.warn(importable)
2024-11-03T19:02:14,376   creating build/lib/proteome_data_prep/data
2024-11-03T19:02:14,377   copying proteome_data_prep/data/acc_by_tf_gene.json -> build/lib/proteome_data_prep/data
2024-11-03T19:02:14,377   copying proteome_data_prep/data/bad_batches.txt -> build/lib/proteome_data_prep/data
2024-11-03T19:02:14,378   copying proteome_data_prep/data/gene_info_by_acc.json -> build/lib/proteome_data_prep/data
2024-11-03T19:02:14,438   copying proteome_data_prep/data/tf_proteins.txt -> build/lib/proteome_data_prep/data
2024-11-03T19:02:14,469   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-11-03T19:02:14,470   !!

2024-11-03T19:02:14,471           ********************************************************************************
2024-11-03T19:02:14,471           Please avoid running ``setup.py`` directly.
2024-11-03T19:02:14,472           Instead, use pypa/build, pypa/installer or other
2024-11-03T19:02:14,472           standards-based tools.

2024-11-03T19:02:14,473           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-11-03T19:02:14,474           ********************************************************************************

2024-11-03T19:02:14,475   !!
2024-11-03T19:02:14,475     self.initialize_options()
2024-11-03T19:02:14,496   installing to build/bdist.linux-armv7l/wheel
2024-11-03T19:02:14,497   running install
2024-11-03T19:02:14,522   running install_lib
2024-11-03T19:02:14,551   creating build/bdist.linux-armv7l/wheel
2024-11-03T19:02:14,554   creating build/bdist.linux-armv7l/wheel/proteome_data_prep
2024-11-03T19:02:14,555   copying build/lib/proteome_data_prep/data_container.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T19:02:14,557   copying build/lib/proteome_data_prep/process_utils.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T19:02:14,560   copying build/lib/proteome_data_prep/data_loader.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T19:02:14,563   creating build/bdist.linux-armv7l/wheel/proteome_data_prep/data
2024-11-03T19:02:14,564   copying build/lib/proteome_data_prep/data/tf_proteins.txt -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T19:02:14,568   copying build/lib/proteome_data_prep/data/acc_by_tf_gene.json -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T19:02:14,571   copying build/lib/proteome_data_prep/data/bad_batches.txt -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T19:02:14,573   copying build/lib/proteome_data_prep/data/gene_info_by_acc.json -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T19:02:14,670   copying build/lib/proteome_data_prep/data_utils.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T19:02:14,672   copying build/lib/proteome_data_prep/__init__.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T19:02:14,674   running install_egg_info
2024-11-03T19:02:14,707   Copying ProteomeDataPrep.egg-info to build/bdist.linux-armv7l/wheel/./ProteomeDataPrep-0.2.0-py3.11.egg-info
2024-11-03T19:02:14,719   running install_scripts
2024-11-03T19:02:14,732   creating build/bdist.linux-armv7l/wheel/ProteomeDataPrep-0.2.0.dist-info/WHEEL
2024-11-03T19:02:14,734   creating '/tmp/pip-wheel-58mvb1cx/ProteomeDataPrep-0.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-11-03T19:02:14,737   adding 'proteome_data_prep/__init__.py'
2024-11-03T19:02:14,738   adding 'proteome_data_prep/data_container.py'
2024-11-03T19:02:14,741   adding 'proteome_data_prep/data_loader.py'
2024-11-03T19:02:14,742   adding 'proteome_data_prep/data_utils.py'
2024-11-03T19:02:14,744   adding 'proteome_data_prep/process_utils.py'
2024-11-03T19:02:14,750   adding 'proteome_data_prep/data/acc_by_tf_gene.json'
2024-11-03T19:02:14,752   adding 'proteome_data_prep/data/bad_batches.txt'
2024-11-03T19:02:15,111   adding 'proteome_data_prep/data/gene_info_by_acc.json'
2024-11-03T19:02:15,153   adding 'proteome_data_prep/data/tf_proteins.txt'
2024-11-03T19:02:15,154   adding 'ProteomeDataPrep-0.2.0.dist-info/METADATA'
2024-11-03T19:02:15,155   adding 'ProteomeDataPrep-0.2.0.dist-info/WHEEL'
2024-11-03T19:02:15,156   adding 'ProteomeDataPrep-0.2.0.dist-info/top_level.txt'
2024-11-03T19:02:15,157   adding 'ProteomeDataPrep-0.2.0.dist-info/RECORD'
2024-11-03T19:02:15,169   removing build/bdist.linux-armv7l/wheel
2024-11-03T19:02:15,285   Building wheel for proteomedataprep (setup.py): finished with status 'done'
2024-11-03T19:02:15,296   Created wheel for proteomedataprep: filename=ProteomeDataPrep-0.2.0-py3-none-any.whl size=857985 sha256=3431642206fad994e0fd46d920b2e061cc50dfbdb50747b9d04cbdb22213f981
2024-11-03T19:02:15,298   Stored in directory: /tmp/pip-ephem-wheel-cache-ynv984q0/wheels/a1/9d/f0/c9c25025e6ca177a56cf5f7b4c3ad2e4b0efc96b31b4994595
2024-11-03T19:02:15,307 Successfully built proteomedataprep
2024-11-03T19:02:15,346 Removed build tracker: '/tmp/pip-build-tracker-8ie9bnt1'