2024-11-03T19:13:56,683 Created temporary directory: /tmp/pip-build-tracker-9dqud85c
2024-11-03T19:13:56,684 Initialized build tracking at /tmp/pip-build-tracker-9dqud85c
2024-11-03T19:13:56,685 Created build tracker: /tmp/pip-build-tracker-9dqud85c
2024-11-03T19:13:56,685 Entered build tracker: /tmp/pip-build-tracker-9dqud85c
2024-11-03T19:13:56,686 Created temporary directory: /tmp/pip-wheel-dbm7z7pm
2024-11-03T19:13:56,690 Created temporary directory: /tmp/pip-ephem-wheel-cache-eeyd0x52
2024-11-03T19:13:56,733 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-11-03T19:13:56,736 2 location(s) to search for versions of proteomedataprep:
2024-11-03T19:13:56,736 * https://pypi.org/simple/proteomedataprep/
2024-11-03T19:13:56,736 * https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T19:13:56,737 Fetching project page and analyzing links: https://pypi.org/simple/proteomedataprep/
2024-11-03T19:13:56,737 Getting page https://pypi.org/simple/proteomedataprep/
2024-11-03T19:13:56,739 Found index url https://pypi.org/simple/
2024-11-03T19:13:56,893 Fetched page https://pypi.org/simple/proteomedataprep/ as application/vnd.pypi.simple.v1+json
2024-11-03T19:13:56,896   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/43/6b/4e39e06e38aaf068629784a7295f5a051bf2f045fda0d161ac781e77fed8/ProteomeDataPrep-0.1.0-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T19:13:56,897   Found link https://files.pythonhosted.org/packages/c5/aa/27a6f70896dfb99a924f00c909a438019868aec0e1e7d48696edd83ec7c3/proteomedataprep-0.1.0.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.1.0
2024-11-03T19:13:56,898   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/c4/44/e6d782cb71a9efd4b62a6db38610962ba23731e2b1de6e03c3247a74db5a/ProteomeDataPrep-0.2.0-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T19:13:56,899   Found link https://files.pythonhosted.org/packages/af/e3/f1d00196524835d572126c422fcf300df4947749200d430492580037c55a/proteomedataprep-0.2.0.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.0
2024-11-03T19:13:56,900   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/71/4d/1a0a049752b2614e34d3b027a66853f242586403db0ae623c789716c34bc/ProteomeDataPrep-0.2.1-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T19:13:56,901   Found link https://files.pythonhosted.org/packages/d0/e3/995cdf9ab27398225e07fe4874f79bf81a27a13e52d59a55f222a94ac518/proteomedataprep-0.2.1.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.1
2024-11-03T19:13:56,902   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/ac/64/a3abb82026c082f787dfc15ba35271a8ec9f8a092e368226f5912dda8450/ProteomeDataPrep-0.2.2-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T19:13:56,902   Found link https://files.pythonhosted.org/packages/89/e2/d0d864b83e71e2c0551230b154fb8c1898c0553927e494888be78644ba86/proteomedataprep-0.2.2.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.2
2024-11-03T19:13:56,903   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/2f/4f/34eb6fb5ef8ad1fd3183d5b9d2721dc619c7b5cd28dcb724dcdb58c0a8b7/ProteomeDataPrep-0.2.3-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T19:13:56,904   Found link https://files.pythonhosted.org/packages/ae/d0/c6aaf2bb351ef8754e19916365ee7728d91a89627591eba8d7c1f3b0f0fd/proteomedataprep-0.2.3.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.3
2024-11-03T19:13:56,905   Skipping link: No binaries permitted for proteomedataprep: https://files.pythonhosted.org/packages/ad/04/1e3763d8b16ec3a5aed7213b2fc58f08f3fc8b6972a121b47c2405f6be47/ProteomeDataPrep-0.2.4-py3-none-any.whl (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T19:13:56,906   Found link https://files.pythonhosted.org/packages/46/c2/4b16b50011de85d52c84928a3c2632c169252f9aebefb9e9629ec57c163f/proteomedataprep-0.2.4.tar.gz (from https://pypi.org/simple/proteomedataprep/) (requires-python:>=3.6), version: 0.2.4
2024-11-03T19:13:56,907 Fetching project page and analyzing links: https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T19:13:56,907 Getting page https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T19:13:56,908 Found index url https://www.piwheels.org/simple/
2024-11-03T19:13:57,073 Fetched page https://www.piwheels.org/simple/proteomedataprep/ as text/html
2024-11-03T19:13:57,075   Skipping link: No binaries permitted for proteomedataprep: https://www.piwheels.org/simple/proteomedataprep/ProteomeDataPrep-0.2.0-py3-none-any.whl#sha256=3431642206fad994e0fd46d920b2e061cc50dfbdb50747b9d04cbdb22213f981 (from https://www.piwheels.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T19:13:57,075   Skipping link: No binaries permitted for proteomedataprep: https://www.piwheels.org/simple/proteomedataprep/ProteomeDataPrep-0.1.0-py3-none-any.whl#sha256=d8ad9f89b3d8739e9e7779cafe89fe7ecb1dd70716a6a1141b2f2aec90b7af6d (from https://www.piwheels.org/simple/proteomedataprep/) (requires-python:>=3.6)
2024-11-03T19:13:57,076 Skipping link: not a file: https://www.piwheels.org/simple/proteomedataprep/
2024-11-03T19:13:57,076 Skipping link: not a file: https://pypi.org/simple/proteomedataprep/
2024-11-03T19:13:57,095 Given no hashes to check 1 links for project 'proteomedataprep': discarding no candidates
2024-11-03T19:13:57,097 Collecting proteomedataprep==0.2.1
2024-11-03T19:13:57,100   Created temporary directory: /tmp/pip-unpack-n_tgdzge
2024-11-03T19:13:57,320   Downloading proteomedataprep-0.2.1.tar.gz (838 kB)
2024-11-03T19:13:57,629   Added proteomedataprep==0.2.1 from https://files.pythonhosted.org/packages/d0/e3/995cdf9ab27398225e07fe4874f79bf81a27a13e52d59a55f222a94ac518/proteomedataprep-0.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-9dqud85c'
2024-11-03T19:13:57,631   Running setup.py (path:/tmp/pip-wheel-dbm7z7pm/proteomedataprep_d61fdec592bc490b9df4a23cc5fc57ed/setup.py) egg_info for package proteomedataprep
2024-11-03T19:13:57,632   Created temporary directory: /tmp/pip-pip-egg-info-_c2rv_ix
2024-11-03T19:13:57,632   Preparing metadata (setup.py): started
2024-11-03T19:13:57,634   Running command python setup.py egg_info
2024-11-03T19:13:58,823   running egg_info
2024-11-03T19:13:58,852   creating /tmp/pip-pip-egg-info-_c2rv_ix/ProteomeDataPrep.egg-info
2024-11-03T19:13:58,853   writing /tmp/pip-pip-egg-info-_c2rv_ix/ProteomeDataPrep.egg-info/PKG-INFO
2024-11-03T19:13:58,857   writing dependency_links to /tmp/pip-pip-egg-info-_c2rv_ix/ProteomeDataPrep.egg-info/dependency_links.txt
2024-11-03T19:13:58,860   writing requirements to /tmp/pip-pip-egg-info-_c2rv_ix/ProteomeDataPrep.egg-info/requires.txt
2024-11-03T19:13:58,861   writing top-level names to /tmp/pip-pip-egg-info-_c2rv_ix/ProteomeDataPrep.egg-info/top_level.txt
2024-11-03T19:13:58,864   writing manifest file '/tmp/pip-pip-egg-info-_c2rv_ix/ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T19:13:58,953   reading manifest file '/tmp/pip-pip-egg-info-_c2rv_ix/ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T19:13:58,957   writing manifest file '/tmp/pip-pip-egg-info-_c2rv_ix/ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T19:13:59,064   Preparing metadata (setup.py): finished with status 'done'
2024-11-03T19:13:59,068   Source in /tmp/pip-wheel-dbm7z7pm/proteomedataprep_d61fdec592bc490b9df4a23cc5fc57ed has version 0.2.1, which satisfies requirement proteomedataprep==0.2.1 from https://files.pythonhosted.org/packages/d0/e3/995cdf9ab27398225e07fe4874f79bf81a27a13e52d59a55f222a94ac518/proteomedataprep-0.2.1.tar.gz
2024-11-03T19:13:59,069   Removed proteomedataprep==0.2.1 from https://files.pythonhosted.org/packages/d0/e3/995cdf9ab27398225e07fe4874f79bf81a27a13e52d59a55f222a94ac518/proteomedataprep-0.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-9dqud85c'
2024-11-03T19:13:59,075 Created temporary directory: /tmp/pip-unpack-uk4vb2lq
2024-11-03T19:13:59,076 Created temporary directory: /tmp/pip-unpack-fof3snys
2024-11-03T19:13:59,077 Building wheels for collected packages: proteomedataprep
2024-11-03T19:13:59,081   Created temporary directory: /tmp/pip-wheel-heg_1279
2024-11-03T19:13:59,081   Building wheel for proteomedataprep (setup.py): started
2024-11-03T19:13:59,082   Destination directory: /tmp/pip-wheel-heg_1279
2024-11-03T19:13:59,083   Running command python setup.py bdist_wheel
2024-11-03T19:14:00,151   running bdist_wheel
2024-11-03T19:14:00,282   running build
2024-11-03T19:14:00,282   running build_py
2024-11-03T19:14:00,312   creating build/lib/proteome_data_prep
2024-11-03T19:14:00,314   copying proteome_data_prep/data_loader.py -> build/lib/proteome_data_prep
2024-11-03T19:14:00,317   copying proteome_data_prep/__init__.py -> build/lib/proteome_data_prep
2024-11-03T19:14:00,319   copying proteome_data_prep/process_utils.py -> build/lib/proteome_data_prep
2024-11-03T19:14:00,322   copying proteome_data_prep/data_utils.py -> build/lib/proteome_data_prep
2024-11-03T19:14:00,323   copying proteome_data_prep/data_container.py -> build/lib/proteome_data_prep
2024-11-03T19:14:00,325   running egg_info
2024-11-03T19:14:00,352   writing ProteomeDataPrep.egg-info/PKG-INFO
2024-11-03T19:14:00,355   writing dependency_links to ProteomeDataPrep.egg-info/dependency_links.txt
2024-11-03T19:14:00,356   writing requirements to ProteomeDataPrep.egg-info/requires.txt
2024-11-03T19:14:00,357   writing top-level names to ProteomeDataPrep.egg-info/top_level.txt
2024-11-03T19:14:00,388   reading manifest file 'ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T19:14:00,393   writing manifest file 'ProteomeDataPrep.egg-info/SOURCES.txt'
2024-11-03T19:14:00,395   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'proteome_data_prep.data' is absent from the `packages` configuration.
2024-11-03T19:14:00,396   !!

2024-11-03T19:14:00,397           ********************************************************************************
2024-11-03T19:14:00,397           ############################
2024-11-03T19:14:00,398           # Package would be ignored #
2024-11-03T19:14:00,398           ############################
2024-11-03T19:14:00,399           Python recognizes 'proteome_data_prep.data' as an importable package[^1],
2024-11-03T19:14:00,399           but it is absent from setuptools' `packages` configuration.

2024-11-03T19:14:00,401           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-03T19:14:00,402           package, please make sure that 'proteome_data_prep.data' is explicitly added
2024-11-03T19:14:00,402           to the `packages` configuration field.

2024-11-03T19:14:00,403           Alternatively, you can also rely on setuptools' discovery methods
2024-11-03T19:14:00,404           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-03T19:14:00,404           instead of `find_packages(...)`/`find:`).

2024-11-03T19:14:00,406           You can read more about "package discovery" on setuptools documentation page:

2024-11-03T19:14:00,407           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-03T19:14:00,408           If you don't want 'proteome_data_prep.data' to be distributed and are
2024-11-03T19:14:00,409           already explicitly excluding 'proteome_data_prep.data' via
2024-11-03T19:14:00,409           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-03T19:14:00,410           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-03T19:14:00,411           combination with a more fine grained `package-data` configuration.

2024-11-03T19:14:00,412           You can read more about "package data files" on setuptools documentation page:

2024-11-03T19:14:00,414           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-03T19:14:00,415           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-03T19:14:00,416                 even if it does not contain any `.py` files.
2024-11-03T19:14:00,416                 On the other hand, currently there is no concept of package data
2024-11-03T19:14:00,416                 directory, all directories are treated like packages.
2024-11-03T19:14:00,417           ********************************************************************************

2024-11-03T19:14:00,418   !!
2024-11-03T19:14:00,418     check.warn(importable)
2024-11-03T19:14:00,419   creating build/lib/proteome_data_prep/data
2024-11-03T19:14:00,419   copying proteome_data_prep/data/acc_by_tf_gene.json -> build/lib/proteome_data_prep/data
2024-11-03T19:14:00,420   copying proteome_data_prep/data/bad_batches.txt -> build/lib/proteome_data_prep/data
2024-11-03T19:14:00,420   copying proteome_data_prep/data/gene_info_by_acc.json -> build/lib/proteome_data_prep/data
2024-11-03T19:14:00,476   copying proteome_data_prep/data/tf_proteins.txt -> build/lib/proteome_data_prep/data
2024-11-03T19:14:00,507   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-11-03T19:14:00,508   !!

2024-11-03T19:14:00,509           ********************************************************************************
2024-11-03T19:14:00,509           Please avoid running ``setup.py`` directly.
2024-11-03T19:14:00,510           Instead, use pypa/build, pypa/installer or other
2024-11-03T19:14:00,511           standards-based tools.

2024-11-03T19:14:00,512           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-11-03T19:14:00,512           ********************************************************************************

2024-11-03T19:14:00,513   !!
2024-11-03T19:14:00,514     self.initialize_options()
2024-11-03T19:14:00,538   installing to build/bdist.linux-armv7l/wheel
2024-11-03T19:14:00,539   running install
2024-11-03T19:14:00,564   running install_lib
2024-11-03T19:14:00,594   creating build/bdist.linux-armv7l/wheel
2024-11-03T19:14:00,596   creating build/bdist.linux-armv7l/wheel/proteome_data_prep
2024-11-03T19:14:00,598   creating build/bdist.linux-armv7l/wheel/proteome_data_prep/data
2024-11-03T19:14:00,600   copying build/lib/proteome_data_prep/data/tf_proteins.txt -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T19:14:00,604   copying build/lib/proteome_data_prep/data/acc_by_tf_gene.json -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T19:14:00,607   copying build/lib/proteome_data_prep/data/gene_info_by_acc.json -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T19:14:00,683   copying build/lib/proteome_data_prep/data/bad_batches.txt -> build/bdist.linux-armv7l/wheel/./proteome_data_prep/data
2024-11-03T19:14:00,685   copying build/lib/proteome_data_prep/data_loader.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T19:14:00,687   copying build/lib/proteome_data_prep/__init__.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T19:14:00,689   copying build/lib/proteome_data_prep/process_utils.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T19:14:00,692   copying build/lib/proteome_data_prep/data_utils.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T19:14:00,694   copying build/lib/proteome_data_prep/data_container.py -> build/bdist.linux-armv7l/wheel/./proteome_data_prep
2024-11-03T19:14:00,695   running install_egg_info
2024-11-03T19:14:00,729   Copying ProteomeDataPrep.egg-info to build/bdist.linux-armv7l/wheel/./ProteomeDataPrep-0.2.1-py3.11.egg-info
2024-11-03T19:14:00,738   running install_scripts
2024-11-03T19:14:00,750   creating build/bdist.linux-armv7l/wheel/ProteomeDataPrep-0.2.1.dist-info/WHEEL
2024-11-03T19:14:00,752   creating '/tmp/pip-wheel-heg_1279/ProteomeDataPrep-0.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-11-03T19:14:00,755   adding 'proteome_data_prep/__init__.py'
2024-11-03T19:14:00,756   adding 'proteome_data_prep/data_container.py'
2024-11-03T19:14:00,758   adding 'proteome_data_prep/data_loader.py'
2024-11-03T19:14:00,759   adding 'proteome_data_prep/data_utils.py'
2024-11-03T19:14:00,762   adding 'proteome_data_prep/process_utils.py'
2024-11-03T19:14:00,768   adding 'proteome_data_prep/data/acc_by_tf_gene.json'
2024-11-03T19:14:00,770   adding 'proteome_data_prep/data/bad_batches.txt'
2024-11-03T19:14:01,145   adding 'proteome_data_prep/data/gene_info_by_acc.json'
2024-11-03T19:14:01,184   adding 'proteome_data_prep/data/tf_proteins.txt'
2024-11-03T19:14:01,186   adding 'ProteomeDataPrep-0.2.1.dist-info/METADATA'
2024-11-03T19:14:01,187   adding 'ProteomeDataPrep-0.2.1.dist-info/WHEEL'
2024-11-03T19:14:01,187   adding 'ProteomeDataPrep-0.2.1.dist-info/top_level.txt'
2024-11-03T19:14:01,188   adding 'ProteomeDataPrep-0.2.1.dist-info/RECORD'
2024-11-03T19:14:01,198   removing build/bdist.linux-armv7l/wheel
2024-11-03T19:14:01,313   Building wheel for proteomedataprep (setup.py): finished with status 'done'
2024-11-03T19:14:01,324   Created wheel for proteomedataprep: filename=ProteomeDataPrep-0.2.1-py3-none-any.whl size=860772 sha256=f601afca63d23535b72b4a262681f6cf42814a62958523d20286d1f5ace4395b
2024-11-03T19:14:01,325   Stored in directory: /tmp/pip-ephem-wheel-cache-eeyd0x52/wheels/f8/6f/8b/996de741e9277ab71d385350abc5fd2734a3baa8f390207bf2
2024-11-03T19:14:01,334 Successfully built proteomedataprep
2024-11-03T19:14:01,363 Removed build tracker: '/tmp/pip-build-tracker-9dqud85c'